Multiple sequence alignment - TraesCS2B01G573900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G573900 chr2B 100.000 6779 0 0 465 7243 763497751 763504529 0.000000e+00 12519.0
1 TraesCS2B01G573900 chr2B 100.000 83 0 0 1 83 763497287 763497369 3.500000e-33 154.0
2 TraesCS2B01G573900 chr2B 97.333 75 2 0 595 669 65491348 65491422 2.120000e-25 128.0
3 TraesCS2B01G573900 chr1B 97.536 2232 46 6 1670 3893 681929583 681931813 0.000000e+00 3808.0
4 TraesCS2B01G573900 chr1B 97.222 1260 29 4 3979 5233 681931832 681933090 0.000000e+00 2128.0
5 TraesCS2B01G573900 chr1B 78.922 1262 206 49 2559 3787 664614728 664613494 0.000000e+00 802.0
6 TraesCS2B01G573900 chr7A 91.248 2845 158 38 2411 5235 47347910 47350683 0.000000e+00 3790.0
7 TraesCS2B01G573900 chr7A 91.645 754 39 14 1669 2415 47346818 47347554 0.000000e+00 1022.0
8 TraesCS2B01G573900 chr7A 93.478 46 3 0 1670 1715 41783844 41783799 1.300000e-07 69.4
9 TraesCS2B01G573900 chr7D 93.961 2517 129 16 2727 5233 88023090 88020587 0.000000e+00 3784.0
10 TraesCS2B01G573900 chr7D 93.199 1294 73 11 1670 2959 88024388 88023106 0.000000e+00 1888.0
11 TraesCS2B01G573900 chr7D 87.444 223 8 3 465 667 22918605 22918383 9.390000e-59 239.0
12 TraesCS2B01G573900 chr7D 94.161 137 7 1 465 600 631840475 631840339 2.650000e-49 207.0
13 TraesCS2B01G573900 chr3D 94.243 2484 123 15 2758 5233 505994320 505991849 0.000000e+00 3777.0
14 TraesCS2B01G573900 chr3D 94.025 887 43 8 1669 2551 505995368 505994488 0.000000e+00 1336.0
15 TraesCS2B01G573900 chr3D 86.364 352 43 3 925 1275 109739838 109739491 5.300000e-101 379.0
16 TraesCS2B01G573900 chr3D 88.841 233 20 4 6131 6359 109738791 109738561 1.540000e-71 281.0
17 TraesCS2B01G573900 chr3D 87.081 209 7 1 484 672 586879919 586880127 1.220000e-52 219.0
18 TraesCS2B01G573900 chr3D 95.588 68 2 1 5612 5678 411617811 411617744 2.760000e-19 108.0
19 TraesCS2B01G573900 chr3D 100.000 28 0 0 5651 5678 411617807 411617834 1.300000e-02 52.8
20 TraesCS2B01G573900 chr6D 94.323 2325 119 11 1670 3987 17138893 17141211 0.000000e+00 3550.0
21 TraesCS2B01G573900 chr6D 94.169 1149 50 12 4087 5233 17141622 17142755 0.000000e+00 1735.0
22 TraesCS2B01G573900 chr6D 85.556 720 77 12 923 1623 1561743 1561032 0.000000e+00 728.0
23 TraesCS2B01G573900 chr6D 80.430 884 116 28 5714 6554 1560739 1559870 7.980000e-174 621.0
24 TraesCS2B01G573900 chr6D 93.382 136 9 0 465 600 464794282 464794147 1.230000e-47 202.0
25 TraesCS2B01G573900 chr6B 97.965 1720 31 4 3518 5235 504135512 504137229 0.000000e+00 2979.0
26 TraesCS2B01G573900 chr6B 97.436 1053 22 3 1660 2707 504133676 504134728 0.000000e+00 1790.0
27 TraesCS2B01G573900 chr6B 86.425 221 10 1 467 667 716905626 716905846 2.630000e-54 224.0
28 TraesCS2B01G573900 chr2A 89.785 2095 160 32 2927 5005 511098788 511096732 0.000000e+00 2634.0
29 TraesCS2B01G573900 chr2A 97.490 956 21 3 716 1669 753439168 753440122 0.000000e+00 1629.0
30 TraesCS2B01G573900 chr2A 94.747 1009 29 7 5689 6684 753440534 753441531 0.000000e+00 1548.0
31 TraesCS2B01G573900 chr2A 91.581 974 61 16 1969 2938 511109640 511108684 0.000000e+00 1325.0
32 TraesCS2B01G573900 chr2A 97.625 421 8 2 5233 5652 753440113 753440532 0.000000e+00 721.0
33 TraesCS2B01G573900 chr2A 91.603 393 21 3 6850 7241 753462011 753462392 3.850000e-147 532.0
34 TraesCS2B01G573900 chr2A 87.697 317 29 5 1234 1543 753475314 753475627 1.920000e-95 361.0
35 TraesCS2B01G573900 chr2A 91.818 220 10 1 5022 5233 511096745 511096526 4.250000e-77 300.0
36 TraesCS2B01G573900 chr2A 91.358 162 12 1 6698 6857 753461028 753461189 3.400000e-53 220.0
37 TraesCS2B01G573900 chr2A 100.000 28 0 0 1440 1467 753475318 753475291 1.300000e-02 52.8
38 TraesCS2B01G573900 chr5D 93.775 1719 86 17 1665 3375 563693075 563694780 0.000000e+00 2562.0
39 TraesCS2B01G573900 chr5D 93.514 370 19 3 4865 5233 563695901 563696266 4.940000e-151 545.0
40 TraesCS2B01G573900 chr5D 86.344 227 11 1 465 671 50997578 50997804 5.650000e-56 230.0
41 TraesCS2B01G573900 chr5A 90.130 1925 150 31 1876 3787 26582260 26580363 0.000000e+00 2466.0
42 TraesCS2B01G573900 chr5A 89.733 1198 89 25 3816 5005 26579997 26578826 0.000000e+00 1500.0
43 TraesCS2B01G573900 chr5A 91.667 228 9 2 5024 5241 26578837 26578610 2.540000e-79 307.0
44 TraesCS2B01G573900 chr5A 87.281 228 9 1 465 672 531651672 531651899 7.260000e-60 243.0
45 TraesCS2B01G573900 chr2D 95.703 1466 40 8 5233 6684 621751022 621752478 0.000000e+00 2337.0
46 TraesCS2B01G573900 chr2D 93.634 864 37 6 810 1667 621750177 621751028 0.000000e+00 1275.0
47 TraesCS2B01G573900 chr2D 94.333 547 30 1 6698 7243 621753149 621753695 0.000000e+00 837.0
48 TraesCS2B01G573900 chr2D 92.661 109 4 4 717 822 621748697 621748804 3.500000e-33 154.0
49 TraesCS2B01G573900 chr2D 97.826 46 1 0 7197 7242 621753908 621753953 6.020000e-11 80.5
50 TraesCS2B01G573900 chr1A 93.286 1564 94 8 1943 3501 369701931 369700374 0.000000e+00 2296.0
51 TraesCS2B01G573900 chr1A 89.124 1039 70 16 4088 5123 369699527 369698529 0.000000e+00 1253.0
52 TraesCS2B01G573900 chr1A 91.844 282 17 6 1666 1944 369702333 369702055 8.810000e-104 388.0
53 TraesCS2B01G573900 chr1A 87.143 70 5 3 1667 1732 131254236 131254167 7.790000e-10 76.8
54 TraesCS2B01G573900 chrUn 95.051 1273 59 3 2758 4028 256704769 256706039 0.000000e+00 1999.0
55 TraesCS2B01G573900 chrUn 97.590 83 2 0 1 83 50097360 50097278 7.570000e-30 143.0
56 TraesCS2B01G573900 chrUn 97.561 82 2 0 2 83 88797486 88797405 2.720000e-29 141.0
57 TraesCS2B01G573900 chr6A 84.070 747 83 20 883 1624 1090499 1091214 0.000000e+00 688.0
58 TraesCS2B01G573900 chr6A 85.022 227 12 6 465 669 602632211 602631985 2.050000e-50 211.0
59 TraesCS2B01G573900 chr6A 96.386 83 3 0 1 83 88813906 88813824 3.520000e-28 137.0
60 TraesCS2B01G573900 chr3B 84.419 706 76 20 925 1624 160824652 160823975 0.000000e+00 664.0
61 TraesCS2B01G573900 chr3B 85.612 278 36 3 5806 6081 160823651 160823376 9.190000e-74 289.0
62 TraesCS2B01G573900 chr3B 92.903 155 9 1 6134 6286 160823144 160822990 2.630000e-54 224.0
63 TraesCS2B01G573900 chr3B 97.403 77 2 0 595 671 226002339 226002415 1.640000e-26 132.0
64 TraesCS2B01G573900 chr3B 82.278 79 13 1 6994 7071 784927500 784927422 4.690000e-07 67.6
65 TraesCS2B01G573900 chr3A 84.425 687 93 9 941 1626 120692109 120692782 0.000000e+00 664.0
66 TraesCS2B01G573900 chr3A 88.106 227 21 4 6133 6355 120693712 120693936 1.550000e-66 265.0
67 TraesCS2B01G573900 chr3A 97.531 81 2 0 3 83 9949397 9949317 9.800000e-29 139.0
68 TraesCS2B01G573900 chr3A 95.000 80 3 1 595 674 603241471 603241393 2.740000e-24 124.0
69 TraesCS2B01G573900 chr5B 87.719 228 8 1 467 674 243769433 243769206 1.560000e-61 248.0
70 TraesCS2B01G573900 chr5B 97.590 83 2 0 1 83 318282395 318282313 7.570000e-30 143.0
71 TraesCS2B01G573900 chr7B 87.391 230 9 1 465 674 697060287 697060058 5.610000e-61 246.0
72 TraesCS2B01G573900 chr7B 98.780 82 1 0 2 83 680267116 680267035 5.860000e-31 147.0
73 TraesCS2B01G573900 chr1D 86.026 229 10 3 465 672 109570009 109570236 7.310000e-55 226.0
74 TraesCS2B01G573900 chr4D 85.500 200 10 8 492 674 84989315 84989118 2.670000e-44 191.0
75 TraesCS2B01G573900 chr4D 96.386 83 3 0 1 83 84989432 84989350 3.520000e-28 137.0
76 TraesCS2B01G573900 chr4B 98.795 83 1 0 1 83 326091026 326091108 1.630000e-31 148.0
77 TraesCS2B01G573900 chr4A 96.386 83 3 0 1 83 642948796 642948878 3.520000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G573900 chr2B 763497287 763504529 7242 False 6336.500000 12519 100.000000 1 7243 2 chr2B.!!$F2 7242
1 TraesCS2B01G573900 chr1B 681929583 681933090 3507 False 2968.000000 3808 97.379000 1670 5233 2 chr1B.!!$F1 3563
2 TraesCS2B01G573900 chr1B 664613494 664614728 1234 True 802.000000 802 78.922000 2559 3787 1 chr1B.!!$R1 1228
3 TraesCS2B01G573900 chr7A 47346818 47350683 3865 False 2406.000000 3790 91.446500 1669 5235 2 chr7A.!!$F1 3566
4 TraesCS2B01G573900 chr7D 88020587 88024388 3801 True 2836.000000 3784 93.580000 1670 5233 2 chr7D.!!$R3 3563
5 TraesCS2B01G573900 chr3D 505991849 505995368 3519 True 2556.500000 3777 94.134000 1669 5233 2 chr3D.!!$R3 3564
6 TraesCS2B01G573900 chr3D 109738561 109739838 1277 True 330.000000 379 87.602500 925 6359 2 chr3D.!!$R2 5434
7 TraesCS2B01G573900 chr6D 17138893 17142755 3862 False 2642.500000 3550 94.246000 1670 5233 2 chr6D.!!$F1 3563
8 TraesCS2B01G573900 chr6D 1559870 1561743 1873 True 674.500000 728 82.993000 923 6554 2 chr6D.!!$R2 5631
9 TraesCS2B01G573900 chr6B 504133676 504137229 3553 False 2384.500000 2979 97.700500 1660 5235 2 chr6B.!!$F2 3575
10 TraesCS2B01G573900 chr2A 511096526 511098788 2262 True 1467.000000 2634 90.801500 2927 5233 2 chr2A.!!$R3 2306
11 TraesCS2B01G573900 chr2A 511108684 511109640 956 True 1325.000000 1325 91.581000 1969 2938 1 chr2A.!!$R1 969
12 TraesCS2B01G573900 chr2A 753439168 753441531 2363 False 1299.333333 1629 96.620667 716 6684 3 chr2A.!!$F2 5968
13 TraesCS2B01G573900 chr2A 753461028 753462392 1364 False 376.000000 532 91.480500 6698 7241 2 chr2A.!!$F3 543
14 TraesCS2B01G573900 chr5D 563693075 563696266 3191 False 1553.500000 2562 93.644500 1665 5233 2 chr5D.!!$F2 3568
15 TraesCS2B01G573900 chr5A 26578610 26582260 3650 True 1424.333333 2466 90.510000 1876 5241 3 chr5A.!!$R1 3365
16 TraesCS2B01G573900 chr2D 621748697 621753953 5256 False 936.700000 2337 94.831400 717 7243 5 chr2D.!!$F1 6526
17 TraesCS2B01G573900 chr1A 369698529 369702333 3804 True 1312.333333 2296 91.418000 1666 5123 3 chr1A.!!$R2 3457
18 TraesCS2B01G573900 chrUn 256704769 256706039 1270 False 1999.000000 1999 95.051000 2758 4028 1 chrUn.!!$F1 1270
19 TraesCS2B01G573900 chr6A 1090499 1091214 715 False 688.000000 688 84.070000 883 1624 1 chr6A.!!$F1 741
20 TraesCS2B01G573900 chr3B 160822990 160824652 1662 True 392.333333 664 87.644667 925 6286 3 chr3B.!!$R2 5361
21 TraesCS2B01G573900 chr3A 120692109 120693936 1827 False 464.500000 664 86.265500 941 6355 2 chr3A.!!$F1 5414

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
676 677 0.101939 GGGAGACGTACGGGATGTTC 59.898 60.0 21.06 6.71 0.00 3.18 F
1160 2551 0.040067 GGCAACTTTGTCAAGCTCGG 60.040 55.0 0.00 0.00 32.57 4.63 F
2538 4474 0.673333 TGGCCAGACATGTAGTTGCG 60.673 55.0 0.00 0.00 0.00 4.85 F
3882 6810 0.700564 ACAGACATGCAACTCCCCAT 59.299 50.0 0.00 0.00 0.00 4.00 F
4005 6934 0.530744 TAGGCACTAGGTTGCAGTCG 59.469 55.0 7.55 0.00 44.94 4.18 F
5912 9308 0.736325 CAAGAAGCACTACGACCCCG 60.736 60.0 0.00 0.00 42.50 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2538 4474 0.106708 TGCAATCATAGCCCTCGACC 59.893 55.000 0.00 0.00 0.0 4.79 R
2747 4956 1.973281 CTGCATGTCCACCCACCAC 60.973 63.158 0.00 0.00 0.0 4.16 R
4005 6934 0.246635 ATGTGATATCTACCCCGCGC 59.753 55.000 0.00 0.00 0.0 6.86 R
5029 8389 0.333993 ACTCTGGGCCTTAGGTACGA 59.666 55.000 4.53 0.00 0.0 3.43 R
5959 9356 0.320374 CGGCTTCCACCAACACTCTA 59.680 55.000 0.00 0.00 0.0 2.43 R
7173 12398 1.274167 CCTGTAAGTTGGCCTACGTGA 59.726 52.381 15.30 0.76 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 4.166011 GCCGCAACGCACCAGATC 62.166 66.667 0.00 0.00 0.00 2.75
54 55 3.853330 CCGCAACGCACCAGATCG 61.853 66.667 0.00 0.00 0.00 3.69
55 56 4.505217 CGCAACGCACCAGATCGC 62.505 66.667 0.00 0.00 0.00 4.58
56 57 3.422303 GCAACGCACCAGATCGCA 61.422 61.111 0.00 0.00 0.00 5.10
57 58 2.965147 GCAACGCACCAGATCGCAA 61.965 57.895 0.00 0.00 0.00 4.85
58 59 1.133253 CAACGCACCAGATCGCAAG 59.867 57.895 0.00 0.00 0.00 4.01
59 60 2.034879 AACGCACCAGATCGCAAGG 61.035 57.895 0.00 0.00 38.47 3.61
60 61 3.869272 CGCACCAGATCGCAAGGC 61.869 66.667 0.00 0.00 38.47 4.35
61 62 3.512516 GCACCAGATCGCAAGGCC 61.513 66.667 0.00 0.00 38.47 5.19
62 63 2.270205 CACCAGATCGCAAGGCCT 59.730 61.111 0.00 0.00 38.47 5.19
63 64 1.817099 CACCAGATCGCAAGGCCTC 60.817 63.158 5.23 0.00 38.47 4.70
64 65 2.203126 CCAGATCGCAAGGCCTCC 60.203 66.667 5.23 0.00 38.47 4.30
65 66 2.739996 CCAGATCGCAAGGCCTCCT 61.740 63.158 5.23 0.00 33.87 3.69
66 67 1.523258 CAGATCGCAAGGCCTCCTG 60.523 63.158 5.23 1.88 32.13 3.86
67 68 2.899339 GATCGCAAGGCCTCCTGC 60.899 66.667 17.98 17.98 40.16 4.85
78 79 4.918201 CTCCTGCCGCGGGGAATC 62.918 72.222 29.38 10.37 34.06 2.52
524 525 4.760047 CAACCCCACCCGAGCGAG 62.760 72.222 0.00 0.00 0.00 5.03
564 565 4.148825 CTGGCGACGGCTAGGCTT 62.149 66.667 22.70 4.55 43.43 4.35
565 566 4.143333 TGGCGACGGCTAGGCTTC 62.143 66.667 22.70 13.61 39.81 3.86
616 617 4.910585 GTTCGGCGGCGATGGGAT 62.911 66.667 35.04 0.00 0.00 3.85
617 618 4.602259 TTCGGCGGCGATGGGATC 62.602 66.667 35.04 0.00 0.00 3.36
620 621 4.996434 GGCGGCGATGGGATCTGG 62.996 72.222 12.98 0.00 0.00 3.86
621 622 4.996434 GCGGCGATGGGATCTGGG 62.996 72.222 12.98 0.00 0.00 4.45
622 623 4.320456 CGGCGATGGGATCTGGGG 62.320 72.222 0.00 0.00 0.00 4.96
623 624 4.650377 GGCGATGGGATCTGGGGC 62.650 72.222 0.00 0.00 0.00 5.80
624 625 4.650377 GCGATGGGATCTGGGGCC 62.650 72.222 0.00 0.00 0.00 5.80
625 626 2.851102 CGATGGGATCTGGGGCCT 60.851 66.667 0.84 0.00 0.00 5.19
626 627 2.888447 CGATGGGATCTGGGGCCTC 61.888 68.421 0.84 0.00 0.00 4.70
627 628 2.451294 ATGGGATCTGGGGCCTCC 60.451 66.667 0.00 0.00 0.00 4.30
663 664 3.844090 GCAGCTCGGGAGGGAGAC 61.844 72.222 0.00 0.00 36.08 3.36
664 665 3.522731 CAGCTCGGGAGGGAGACG 61.523 72.222 0.00 0.00 36.08 4.18
665 666 4.049817 AGCTCGGGAGGGAGACGT 62.050 66.667 0.00 0.00 36.08 4.34
666 667 2.124403 GCTCGGGAGGGAGACGTA 60.124 66.667 0.00 0.00 36.08 3.57
667 668 2.479750 GCTCGGGAGGGAGACGTAC 61.480 68.421 0.00 0.00 36.08 3.67
668 669 2.124983 TCGGGAGGGAGACGTACG 60.125 66.667 15.01 15.01 0.00 3.67
669 670 3.207669 CGGGAGGGAGACGTACGG 61.208 72.222 21.06 1.43 0.00 4.02
670 671 2.832201 GGGAGGGAGACGTACGGG 60.832 72.222 21.06 0.00 0.00 5.28
671 672 2.273449 GGAGGGAGACGTACGGGA 59.727 66.667 21.06 0.00 0.00 5.14
672 673 1.152798 GGAGGGAGACGTACGGGAT 60.153 63.158 21.06 4.38 0.00 3.85
673 674 1.453762 GGAGGGAGACGTACGGGATG 61.454 65.000 21.06 0.00 0.00 3.51
674 675 0.750911 GAGGGAGACGTACGGGATGT 60.751 60.000 21.06 0.00 0.00 3.06
675 676 0.324091 AGGGAGACGTACGGGATGTT 60.324 55.000 21.06 0.00 0.00 2.71
676 677 0.101939 GGGAGACGTACGGGATGTTC 59.898 60.000 21.06 6.71 0.00 3.18
677 678 0.101939 GGAGACGTACGGGATGTTCC 59.898 60.000 21.06 12.23 35.23 3.62
678 679 1.101331 GAGACGTACGGGATGTTCCT 58.899 55.000 21.06 3.14 36.57 3.36
679 680 1.475682 GAGACGTACGGGATGTTCCTT 59.524 52.381 21.06 0.00 36.57 3.36
680 681 1.203994 AGACGTACGGGATGTTCCTTG 59.796 52.381 21.06 0.00 36.57 3.61
681 682 0.390735 ACGTACGGGATGTTCCTTGC 60.391 55.000 21.06 0.00 36.57 4.01
682 683 1.418342 CGTACGGGATGTTCCTTGCG 61.418 60.000 7.57 0.00 36.57 4.85
683 684 0.390735 GTACGGGATGTTCCTTGCGT 60.391 55.000 0.00 0.00 36.29 5.24
684 685 0.322322 TACGGGATGTTCCTTGCGTT 59.678 50.000 0.00 0.00 34.61 4.84
685 686 0.322322 ACGGGATGTTCCTTGCGTTA 59.678 50.000 0.00 0.00 36.57 3.18
686 687 1.065709 ACGGGATGTTCCTTGCGTTAT 60.066 47.619 0.00 0.00 36.57 1.89
687 688 1.597663 CGGGATGTTCCTTGCGTTATC 59.402 52.381 0.00 0.00 36.57 1.75
688 689 2.741878 CGGGATGTTCCTTGCGTTATCT 60.742 50.000 0.00 0.00 36.57 1.98
689 690 2.872858 GGGATGTTCCTTGCGTTATCTC 59.127 50.000 0.00 0.00 36.57 2.75
690 691 2.872858 GGATGTTCCTTGCGTTATCTCC 59.127 50.000 0.00 0.00 32.53 3.71
691 692 2.396590 TGTTCCTTGCGTTATCTCCC 57.603 50.000 0.00 0.00 0.00 4.30
692 693 1.626321 TGTTCCTTGCGTTATCTCCCA 59.374 47.619 0.00 0.00 0.00 4.37
693 694 2.238646 TGTTCCTTGCGTTATCTCCCAT 59.761 45.455 0.00 0.00 0.00 4.00
694 695 3.452990 TGTTCCTTGCGTTATCTCCCATA 59.547 43.478 0.00 0.00 0.00 2.74
695 696 4.058817 GTTCCTTGCGTTATCTCCCATAG 58.941 47.826 0.00 0.00 0.00 2.23
696 697 2.632996 TCCTTGCGTTATCTCCCATAGG 59.367 50.000 0.00 0.00 0.00 2.57
697 698 2.289694 CCTTGCGTTATCTCCCATAGGG 60.290 54.545 0.00 0.00 46.11 3.53
712 713 3.573967 CCATAGGGGGAAAACATACATGC 59.426 47.826 0.00 0.00 0.00 4.06
713 714 2.917713 AGGGGGAAAACATACATGCA 57.082 45.000 0.00 0.00 0.00 3.96
714 715 3.182887 AGGGGGAAAACATACATGCAA 57.817 42.857 0.00 0.00 0.00 4.08
808 2194 9.241317 GTTGAATCATAAACTCATATGGCTTTG 57.759 33.333 2.13 0.00 34.66 2.77
824 2210 3.621268 GGCTTTGTCGCTACATGATTACA 59.379 43.478 0.00 0.00 34.97 2.41
851 2237 5.634020 AGATACTTACAGACAAAGCACGAAC 59.366 40.000 0.00 0.00 0.00 3.95
1120 2511 2.259917 TCCACTCCATCTTCAGCTTCA 58.740 47.619 0.00 0.00 0.00 3.02
1133 2524 0.388649 AGCTTCAGCAACTCGTACGG 60.389 55.000 16.52 8.79 45.16 4.02
1160 2551 0.040067 GGCAACTTTGTCAAGCTCGG 60.040 55.000 0.00 0.00 32.57 4.63
1286 2677 7.201812 GGACTTCATTGGTATTTATGCACATGA 60.202 37.037 0.00 0.00 0.00 3.07
1316 2707 7.149307 GTCCTTTATCTCGAATTAGCTAGCTT 58.851 38.462 24.88 4.46 0.00 3.74
1525 2938 8.975663 TTGATCTATCCTACTTCTACGAGAAA 57.024 34.615 0.00 0.00 33.19 2.52
1539 2952 2.221055 ACGAGAAAAACATCACGAGTGC 59.779 45.455 0.00 0.00 36.97 4.40
1675 3092 7.769970 CCACTCGGTTATAAGTTTATGGGTTTA 59.230 37.037 0.00 0.00 0.00 2.01
1760 3179 2.693591 TGGATGTTACGACTGATCCTCC 59.306 50.000 0.00 0.00 36.17 4.30
2485 4421 1.825641 GCCACACCCCCATAAAACACT 60.826 52.381 0.00 0.00 0.00 3.55
2538 4474 0.673333 TGGCCAGACATGTAGTTGCG 60.673 55.000 0.00 0.00 0.00 4.85
2694 4632 2.945008 GCAGTTGCATGCCTAGTATCAA 59.055 45.455 16.68 0.00 40.43 2.57
2747 4956 5.637387 ACAAAAACAAAGGTTAGTTGCAGTG 59.363 36.000 0.00 0.00 36.41 3.66
3315 5901 2.935481 CCCCTTCTCCCACTGCCA 60.935 66.667 0.00 0.00 0.00 4.92
3364 5950 6.512578 CGGTCGTGATGGAAAATATGCAATTA 60.513 38.462 0.00 0.00 30.96 1.40
3432 6019 1.908637 TTGCCCCTCCCTCTCCCATA 61.909 60.000 0.00 0.00 0.00 2.74
3677 6265 3.635373 CAGTTGCATGGCTATTGGAAGAT 59.365 43.478 0.00 0.00 0.00 2.40
3882 6810 0.700564 ACAGACATGCAACTCCCCAT 59.299 50.000 0.00 0.00 0.00 4.00
4005 6934 0.530744 TAGGCACTAGGTTGCAGTCG 59.469 55.000 7.55 0.00 44.94 4.18
4367 7694 8.082242 CGACAGAATCTAAAAACCAGGAAAAAT 58.918 33.333 0.00 0.00 0.00 1.82
4541 7875 4.917906 AGAAGGACAAAAGAGCATAGGT 57.082 40.909 0.00 0.00 0.00 3.08
4690 8029 2.183478 TGACTACCGAGTACCGAACA 57.817 50.000 5.46 0.00 41.76 3.18
4909 8253 2.892852 TGGAACAGAAATGGCAAGAAGG 59.107 45.455 0.00 0.00 0.00 3.46
5011 8370 5.333111 GCAGAGACCAACACGTACTTTTTAG 60.333 44.000 0.00 0.00 0.00 1.85
5029 8389 7.829706 ACTTTTTAGTTTGAGAGAAGACCAACT 59.170 33.333 0.00 0.00 0.00 3.16
5235 8615 1.925185 GAGTTTTAGCGCCTCCGTAAG 59.075 52.381 2.29 0.00 36.67 2.34
5630 9015 1.954382 GACCGAAAAAGCTTGTCCCTT 59.046 47.619 0.00 0.00 0.00 3.95
5679 9064 6.112058 GCTAGATACATCCATTTGAGGGATC 58.888 44.000 0.00 0.00 43.99 3.36
5771 9156 6.302269 CCCAAGCTAATCAATAAGGAGATGT 58.698 40.000 0.00 0.00 0.00 3.06
5912 9308 0.736325 CAAGAAGCACTACGACCCCG 60.736 60.000 0.00 0.00 42.50 5.73
5959 9356 2.885644 CTCGCGCGCTACCACAAT 60.886 61.111 30.48 0.00 0.00 2.71
6026 9423 0.527817 CACCAAGATCGTCTACGCCC 60.528 60.000 0.00 0.00 39.60 6.13
6432 10144 2.131776 ACGCTAGCTCCTGAGTAGTT 57.868 50.000 13.93 0.00 0.00 2.24
6451 10163 1.182667 TCTAGCTAGCTGCAACGGAA 58.817 50.000 27.68 3.26 45.94 4.30
6506 10225 2.411806 GCAACCTTTCATTTTGCATGCG 60.412 45.455 14.09 0.00 44.17 4.73
6507 10226 2.801679 CAACCTTTCATTTTGCATGCGT 59.198 40.909 14.09 0.00 0.00 5.24
6508 10227 2.406130 ACCTTTCATTTTGCATGCGTG 58.594 42.857 14.09 9.33 0.00 5.34
6610 10335 1.263217 GGCTCACGGCGGTATAAATTG 59.737 52.381 13.24 0.00 42.94 2.32
6641 10377 6.732154 CATAGTACTCAAAATTCATGGCTGG 58.268 40.000 0.00 0.00 0.00 4.85
6660 10396 0.318699 GTGTTTCCCTTCCTTTGCGC 60.319 55.000 0.00 0.00 0.00 6.09
6665 10401 4.404654 CCTTCCTTTGCGCGTGGC 62.405 66.667 8.43 0.00 43.96 5.01
6687 10423 5.978934 CGGCTATTTTTACCGTAGAACAT 57.021 39.130 0.00 0.00 42.01 2.71
6689 10425 7.101993 CGGCTATTTTTACCGTAGAACATAG 57.898 40.000 0.00 0.00 42.01 2.23
6690 10426 6.919662 CGGCTATTTTTACCGTAGAACATAGA 59.080 38.462 0.00 0.00 42.01 1.98
6691 10427 7.597743 CGGCTATTTTTACCGTAGAACATAGAT 59.402 37.037 0.00 0.00 42.01 1.98
6739 11132 2.803492 CGCCCAAAATTTTCGGAAACCA 60.803 45.455 17.64 0.00 0.00 3.67
6767 11162 0.394352 CTGGCTTTTCCGCTACCCAT 60.394 55.000 0.00 0.00 37.80 4.00
6768 11163 0.039035 TGGCTTTTCCGCTACCCATT 59.961 50.000 0.00 0.00 37.80 3.16
6771 11166 1.816224 GCTTTTCCGCTACCCATTGAA 59.184 47.619 0.00 0.00 0.00 2.69
6804 11199 8.536407 CGATACCGAACAAACTTTTTGAAAAAT 58.464 29.630 3.28 0.00 38.22 1.82
7096 12321 3.129813 CCCCTACCAAAAATAAAGCGGTC 59.870 47.826 0.00 0.00 0.00 4.79
7134 12359 7.949468 ACTTAATCCCTACTAATAAAGCCCT 57.051 36.000 0.00 0.00 0.00 5.19
7173 12398 6.630203 AAAAACCTAAAGGAAACCCTTGTT 57.370 33.333 2.23 0.00 42.99 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.166011 GATCTGGTGCGTTGCGGC 62.166 66.667 0.00 0.00 0.00 6.53
37 38 3.853330 CGATCTGGTGCGTTGCGG 61.853 66.667 0.00 0.00 0.00 5.69
38 39 4.505217 GCGATCTGGTGCGTTGCG 62.505 66.667 0.00 0.00 0.00 4.85
39 40 2.839324 CTTGCGATCTGGTGCGTTGC 62.839 60.000 0.00 0.00 0.00 4.17
40 41 1.133253 CTTGCGATCTGGTGCGTTG 59.867 57.895 0.00 0.00 0.00 4.10
41 42 2.034879 CCTTGCGATCTGGTGCGTT 61.035 57.895 0.00 0.00 0.00 4.84
42 43 2.434884 CCTTGCGATCTGGTGCGT 60.435 61.111 0.00 0.00 0.00 5.24
43 44 3.869272 GCCTTGCGATCTGGTGCG 61.869 66.667 0.00 0.00 0.00 5.34
44 45 3.512516 GGCCTTGCGATCTGGTGC 61.513 66.667 0.00 0.00 0.00 5.01
45 46 1.817099 GAGGCCTTGCGATCTGGTG 60.817 63.158 6.77 0.00 0.00 4.17
46 47 2.586792 GAGGCCTTGCGATCTGGT 59.413 61.111 6.77 0.00 0.00 4.00
47 48 2.203126 GGAGGCCTTGCGATCTGG 60.203 66.667 6.77 0.00 0.00 3.86
48 49 1.523258 CAGGAGGCCTTGCGATCTG 60.523 63.158 6.77 4.82 0.00 2.90
49 50 2.906458 CAGGAGGCCTTGCGATCT 59.094 61.111 6.77 0.00 0.00 2.75
50 51 2.899339 GCAGGAGGCCTTGCGATC 60.899 66.667 13.53 0.00 36.11 3.69
61 62 4.918201 GATTCCCCGCGGCAGGAG 62.918 72.222 22.85 5.30 32.57 3.69
507 508 4.760047 CTCGCTCGGGTGGGGTTG 62.760 72.222 0.00 0.00 0.00 3.77
547 548 4.148825 AAGCCTAGCCGTCGCCAG 62.149 66.667 0.00 0.00 34.57 4.85
548 549 4.143333 GAAGCCTAGCCGTCGCCA 62.143 66.667 0.00 0.00 34.57 5.69
603 604 4.996434 CCAGATCCCATCGCCGCC 62.996 72.222 0.00 0.00 0.00 6.13
604 605 4.996434 CCCAGATCCCATCGCCGC 62.996 72.222 0.00 0.00 0.00 6.53
605 606 4.320456 CCCCAGATCCCATCGCCG 62.320 72.222 0.00 0.00 0.00 6.46
606 607 4.650377 GCCCCAGATCCCATCGCC 62.650 72.222 0.00 0.00 0.00 5.54
607 608 4.650377 GGCCCCAGATCCCATCGC 62.650 72.222 0.00 0.00 0.00 4.58
608 609 2.851102 AGGCCCCAGATCCCATCG 60.851 66.667 0.00 0.00 0.00 3.84
609 610 2.533463 GGAGGCCCCAGATCCCATC 61.533 68.421 0.00 0.00 34.14 3.51
610 611 2.451294 GGAGGCCCCAGATCCCAT 60.451 66.667 0.00 0.00 34.14 4.00
646 647 3.844090 GTCTCCCTCCCGAGCTGC 61.844 72.222 0.00 0.00 0.00 5.25
647 648 2.888464 TACGTCTCCCTCCCGAGCTG 62.888 65.000 0.00 0.00 0.00 4.24
648 649 2.677289 TACGTCTCCCTCCCGAGCT 61.677 63.158 0.00 0.00 0.00 4.09
649 650 2.124403 TACGTCTCCCTCCCGAGC 60.124 66.667 0.00 0.00 0.00 5.03
650 651 2.178890 CGTACGTCTCCCTCCCGAG 61.179 68.421 7.22 0.00 0.00 4.63
651 652 2.124983 CGTACGTCTCCCTCCCGA 60.125 66.667 7.22 0.00 0.00 5.14
652 653 3.207669 CCGTACGTCTCCCTCCCG 61.208 72.222 15.21 0.00 0.00 5.14
653 654 2.637383 ATCCCGTACGTCTCCCTCCC 62.637 65.000 15.21 0.00 0.00 4.30
654 655 1.152798 ATCCCGTACGTCTCCCTCC 60.153 63.158 15.21 0.00 0.00 4.30
655 656 0.750911 ACATCCCGTACGTCTCCCTC 60.751 60.000 15.21 0.00 0.00 4.30
656 657 0.324091 AACATCCCGTACGTCTCCCT 60.324 55.000 15.21 0.00 0.00 4.20
657 658 0.101939 GAACATCCCGTACGTCTCCC 59.898 60.000 15.21 0.00 0.00 4.30
658 659 0.101939 GGAACATCCCGTACGTCTCC 59.898 60.000 15.21 6.64 0.00 3.71
659 660 1.101331 AGGAACATCCCGTACGTCTC 58.899 55.000 15.21 1.21 37.19 3.36
660 661 1.203994 CAAGGAACATCCCGTACGTCT 59.796 52.381 15.21 0.00 37.19 4.18
661 662 1.636988 CAAGGAACATCCCGTACGTC 58.363 55.000 15.21 3.56 37.19 4.34
662 663 0.390735 GCAAGGAACATCCCGTACGT 60.391 55.000 15.21 0.00 37.19 3.57
663 664 1.418342 CGCAAGGAACATCCCGTACG 61.418 60.000 8.69 8.69 37.19 3.67
664 665 0.390735 ACGCAAGGAACATCCCGTAC 60.391 55.000 0.00 0.00 46.39 3.67
665 666 0.322322 AACGCAAGGAACATCCCGTA 59.678 50.000 0.73 0.00 46.39 4.02
666 667 0.322322 TAACGCAAGGAACATCCCGT 59.678 50.000 0.00 0.00 46.39 5.28
667 668 1.597663 GATAACGCAAGGAACATCCCG 59.402 52.381 0.00 0.00 46.39 5.14
668 669 2.872858 GAGATAACGCAAGGAACATCCC 59.127 50.000 0.00 0.00 46.39 3.85
669 670 2.872858 GGAGATAACGCAAGGAACATCC 59.127 50.000 0.00 0.00 46.39 3.51
670 671 2.872858 GGGAGATAACGCAAGGAACATC 59.127 50.000 0.00 0.00 46.39 3.06
671 672 2.238646 TGGGAGATAACGCAAGGAACAT 59.761 45.455 0.00 0.00 46.39 2.71
672 673 1.626321 TGGGAGATAACGCAAGGAACA 59.374 47.619 0.00 0.00 46.39 3.18
673 674 2.396590 TGGGAGATAACGCAAGGAAC 57.603 50.000 0.00 0.00 46.39 3.62
674 675 3.071023 CCTATGGGAGATAACGCAAGGAA 59.929 47.826 0.00 0.00 35.42 3.36
675 676 2.632996 CCTATGGGAGATAACGCAAGGA 59.367 50.000 0.00 0.00 35.42 3.36
676 677 3.045601 CCTATGGGAGATAACGCAAGG 57.954 52.381 0.00 0.00 36.63 3.61
690 691 3.573967 GCATGTATGTTTTCCCCCTATGG 59.426 47.826 0.00 0.00 0.00 2.74
691 692 4.214310 TGCATGTATGTTTTCCCCCTATG 58.786 43.478 0.00 0.00 0.00 2.23
692 693 4.534647 TGCATGTATGTTTTCCCCCTAT 57.465 40.909 0.00 0.00 0.00 2.57
693 694 4.017958 TCTTGCATGTATGTTTTCCCCCTA 60.018 41.667 0.00 0.00 0.00 3.53
694 695 2.917713 TGCATGTATGTTTTCCCCCT 57.082 45.000 0.00 0.00 0.00 4.79
695 696 3.096092 TCTTGCATGTATGTTTTCCCCC 58.904 45.455 0.00 0.00 0.00 5.40
696 697 4.016444 TCTCTTGCATGTATGTTTTCCCC 58.984 43.478 0.00 0.00 0.00 4.81
697 698 5.357878 TCATCTCTTGCATGTATGTTTTCCC 59.642 40.000 13.35 0.00 0.00 3.97
698 699 6.441093 TCATCTCTTGCATGTATGTTTTCC 57.559 37.500 13.35 0.00 0.00 3.13
699 700 8.239314 TCTTTCATCTCTTGCATGTATGTTTTC 58.761 33.333 13.35 0.00 0.00 2.29
700 701 8.114331 TCTTTCATCTCTTGCATGTATGTTTT 57.886 30.769 13.35 0.00 0.00 2.43
701 702 7.692460 TCTTTCATCTCTTGCATGTATGTTT 57.308 32.000 13.35 0.00 0.00 2.83
702 703 7.692460 TTCTTTCATCTCTTGCATGTATGTT 57.308 32.000 13.35 0.00 0.00 2.71
703 704 7.876936 ATTCTTTCATCTCTTGCATGTATGT 57.123 32.000 13.35 0.00 0.00 2.29
704 705 9.053840 AGTATTCTTTCATCTCTTGCATGTATG 57.946 33.333 0.00 5.63 0.00 2.39
705 706 9.624373 AAGTATTCTTTCATCTCTTGCATGTAT 57.376 29.630 0.00 0.00 0.00 2.29
706 707 8.886719 CAAGTATTCTTTCATCTCTTGCATGTA 58.113 33.333 0.00 0.00 0.00 2.29
707 708 7.392673 ACAAGTATTCTTTCATCTCTTGCATGT 59.607 33.333 0.00 0.00 35.64 3.21
708 709 7.759465 ACAAGTATTCTTTCATCTCTTGCATG 58.241 34.615 0.00 0.00 35.64 4.06
709 710 7.934855 ACAAGTATTCTTTCATCTCTTGCAT 57.065 32.000 0.00 0.00 35.64 3.96
710 711 8.886719 CATACAAGTATTCTTTCATCTCTTGCA 58.113 33.333 0.00 0.00 35.64 4.08
711 712 9.102757 TCATACAAGTATTCTTTCATCTCTTGC 57.897 33.333 0.00 0.00 35.64 4.01
741 742 6.753913 TGTAGAGATAAAGCCATCCTGAAT 57.246 37.500 0.00 0.00 0.00 2.57
742 743 6.753913 ATGTAGAGATAAAGCCATCCTGAA 57.246 37.500 0.00 0.00 0.00 3.02
743 744 8.441311 AATATGTAGAGATAAAGCCATCCTGA 57.559 34.615 0.00 0.00 0.00 3.86
744 745 9.512588 AAAATATGTAGAGATAAAGCCATCCTG 57.487 33.333 0.00 0.00 0.00 3.86
808 2194 7.364200 AGTATCTTCTGTAATCATGTAGCGAC 58.636 38.462 0.00 0.00 0.00 5.19
824 2210 5.864474 CGTGCTTTGTCTGTAAGTATCTTCT 59.136 40.000 0.00 0.00 33.76 2.85
851 2237 2.538437 CATCGCTCAAGTTCTCTGAGG 58.462 52.381 4.59 0.00 0.00 3.86
1133 2524 2.051345 CAAAGTTGCCGGTGTCGC 60.051 61.111 1.90 0.00 34.56 5.19
1168 2559 2.026356 TGAAAGGGATGATCGGAAGCAA 60.026 45.455 0.00 0.00 0.00 3.91
1286 2677 5.927115 GCTAATTCGAGATAAAGGACGGAAT 59.073 40.000 0.00 0.00 0.00 3.01
1316 2707 6.119536 TCTCTCTAACAAAAACCTGAAAGCA 58.880 36.000 0.00 0.00 0.00 3.91
1525 2938 2.325082 GGGCGCACTCGTGATGTTT 61.325 57.895 10.83 0.00 38.14 2.83
1539 2952 2.282462 AGCTGTTGAAAGGGGGCG 60.282 61.111 0.00 0.00 0.00 6.13
1675 3092 5.362263 GTCTAAGTCGACTGAGACCTAGAT 58.638 45.833 37.98 16.05 45.01 1.98
1760 3179 3.186001 CGATGCAGTAGTACTACCTACGG 59.814 52.174 25.97 13.52 41.76 4.02
2485 4421 1.403647 CGTCCGTATTGCAACTCTGGA 60.404 52.381 0.00 4.22 0.00 3.86
2538 4474 0.106708 TGCAATCATAGCCCTCGACC 59.893 55.000 0.00 0.00 0.00 4.79
2747 4956 1.973281 CTGCATGTCCACCCACCAC 60.973 63.158 0.00 0.00 0.00 4.16
3296 5882 2.610859 GCAGTGGGAGAAGGGGGA 60.611 66.667 0.00 0.00 0.00 4.81
3315 5901 6.035542 CGCAACTAAACTTTGTTTTGTTGGAT 59.964 34.615 30.58 10.82 33.18 3.41
3432 6019 5.887214 AAACTTTGTTTTATTGGAGGGCT 57.113 34.783 0.00 0.00 0.00 5.19
3677 6265 1.052124 CGGGGGAGGGTAGTTGCATA 61.052 60.000 0.00 0.00 0.00 3.14
3882 6810 3.107601 TGTTTTGTTGGGTGATTGGGAA 58.892 40.909 0.00 0.00 0.00 3.97
4005 6934 0.246635 ATGTGATATCTACCCCGCGC 59.753 55.000 0.00 0.00 0.00 6.86
4259 7581 9.868277 TTATTATGCATTACCCTTTTGTTTCAG 57.132 29.630 3.54 0.00 0.00 3.02
4541 7875 1.776063 TGATCAATATGCCAGGCCTGA 59.224 47.619 34.91 16.18 0.00 3.86
4581 7917 3.462982 TGCCGTACACAATGGATGATAC 58.537 45.455 0.00 0.00 36.17 2.24
4690 8029 7.118390 CGAATGAGGATTTGTCAAGTCTTAGTT 59.882 37.037 7.88 0.15 0.00 2.24
5011 8370 3.718815 ACGAGTTGGTCTTCTCTCAAAC 58.281 45.455 0.00 0.00 0.00 2.93
5029 8389 0.333993 ACTCTGGGCCTTAGGTACGA 59.666 55.000 4.53 0.00 0.00 3.43
5476 8861 6.982141 TGATTGAGCGTTAACTAATTCCGTAT 59.018 34.615 3.71 0.00 0.00 3.06
5525 8910 7.342284 GTGCTAAATATATACTAGCTCCCTCCA 59.658 40.741 19.79 3.87 39.06 3.86
5630 9015 4.040829 CCTGGTGCTAGATACATCCATTGA 59.959 45.833 0.00 0.00 0.00 2.57
5658 9043 6.504634 AGATGATCCCTCAAATGGATGTATCT 59.495 38.462 0.00 3.78 42.69 1.98
5771 9156 5.278512 GCAAAACCCAACAACAAAGGAAAAA 60.279 36.000 0.00 0.00 0.00 1.94
5959 9356 0.320374 CGGCTTCCACCAACACTCTA 59.680 55.000 0.00 0.00 0.00 2.43
6026 9423 0.241749 TTCACCGGCGTGTAGTAGTG 59.758 55.000 6.01 4.93 41.09 2.74
6045 9442 1.363246 GGGTTCCCTGAGAAACTCCT 58.637 55.000 0.00 0.00 42.30 3.69
6432 10144 1.135139 CTTCCGTTGCAGCTAGCTAGA 59.865 52.381 25.15 3.55 45.94 2.43
6451 10163 0.952984 GCTTCAAGAGACTTGCGCCT 60.953 55.000 4.18 0.00 0.00 5.52
6506 10225 7.998580 AGTTATTGAAGGAGTAGTACTAGCAC 58.001 38.462 1.87 0.00 0.00 4.40
6507 10226 7.284944 GGAGTTATTGAAGGAGTAGTACTAGCA 59.715 40.741 1.87 0.00 0.00 3.49
6508 10227 7.284944 TGGAGTTATTGAAGGAGTAGTACTAGC 59.715 40.741 1.87 0.00 0.00 3.42
6509 10228 8.623030 GTGGAGTTATTGAAGGAGTAGTACTAG 58.377 40.741 1.87 0.00 0.00 2.57
6510 10229 8.111545 TGTGGAGTTATTGAAGGAGTAGTACTA 58.888 37.037 1.88 0.00 0.00 1.82
6511 10230 6.952358 TGTGGAGTTATTGAAGGAGTAGTACT 59.048 38.462 1.37 1.37 0.00 2.73
6610 10335 7.076842 TGAATTTTGAGTACTATGCTGCTTC 57.923 36.000 0.00 0.00 0.00 3.86
6641 10377 0.318699 GCGCAAAGGAAGGGAAACAC 60.319 55.000 0.30 0.00 0.00 3.32
6660 10396 0.027063 CGGTAAAAATAGCCGCCACG 59.973 55.000 0.00 0.00 38.99 4.94
6739 11132 2.481276 GCGGAAAAGCCAGTTTTTGACT 60.481 45.455 0.00 0.00 38.54 3.41
6804 11199 7.093354 TCACAGTTTGCACAGTTCAAATTAAA 58.907 30.769 1.50 0.00 36.06 1.52
6859 12083 4.822350 GGCCACCTATATTTCTTGAGGTTC 59.178 45.833 0.00 0.00 40.41 3.62
6934 12158 4.708868 TTGCAAATTAGTATCTAGCGCG 57.291 40.909 0.00 0.00 0.00 6.86
7173 12398 1.274167 CCTGTAAGTTGGCCTACGTGA 59.726 52.381 15.30 0.76 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.