Multiple sequence alignment - TraesCS2B01G573600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G573600 chr2B 100.000 2984 0 0 1 2984 763450644 763447661 0.000000e+00 5511.0
1 TraesCS2B01G573600 chr2B 82.391 1079 152 23 1015 2087 763506286 763505240 0.000000e+00 905.0
2 TraesCS2B01G573600 chr2B 80.373 1019 157 24 1015 2016 763493314 763492322 0.000000e+00 734.0
3 TraesCS2B01G573600 chr2B 96.633 297 10 0 544 840 244999778 245000074 7.430000e-136 494.0
4 TraesCS2B01G573600 chr2B 88.657 335 30 4 2655 2984 763448478 763448147 4.630000e-108 401.0
5 TraesCS2B01G573600 chr2B 77.617 621 103 18 1393 1984 762805680 762805067 7.920000e-91 344.0
6 TraesCS2B01G573600 chr2B 82.597 362 50 7 988 1342 763334904 763334549 1.040000e-79 307.0
7 TraesCS2B01G573600 chr2B 86.598 194 24 2 1020 1212 762811694 762811502 2.330000e-51 213.0
8 TraesCS2B01G573600 chr2B 89.873 79 8 0 473 551 763506567 763506489 5.260000e-18 102.0
9 TraesCS2B01G573600 chr2B 88.889 81 9 0 759 839 732327852 732327772 1.890000e-17 100.0
10 TraesCS2B01G573600 chr2B 95.349 43 2 0 89 131 763506775 763506733 5.340000e-08 69.4
11 TraesCS2B01G573600 chr2D 94.789 1324 42 10 839 2155 621610357 621609054 0.000000e+00 2037.0
12 TraesCS2B01G573600 chr2D 81.314 1081 152 27 1012 2087 621755452 621754417 0.000000e+00 832.0
13 TraesCS2B01G573600 chr2D 92.262 504 37 2 2154 2655 621608985 621608482 0.000000e+00 713.0
14 TraesCS2B01G573600 chr2D 79.349 983 164 23 1020 1977 621590021 621589053 0.000000e+00 654.0
15 TraesCS2B01G573600 chr2D 77.767 1003 160 26 1016 1984 621841425 621842398 2.600000e-155 558.0
16 TraesCS2B01G573600 chr2D 93.333 300 17 3 75 373 621611556 621611259 9.820000e-120 440.0
17 TraesCS2B01G573600 chr2D 89.676 339 27 5 2652 2984 621608975 621608639 2.750000e-115 425.0
18 TraesCS2B01G573600 chr2D 90.148 203 7 2 349 551 621610554 621610365 4.940000e-63 252.0
19 TraesCS2B01G573600 chr2D 78.972 214 29 12 2772 2974 338839140 338838932 6.710000e-27 132.0
20 TraesCS2B01G573600 chr2D 88.679 53 4 2 844 895 621814632 621814581 2.480000e-06 63.9
21 TraesCS2B01G573600 chr2A 80.471 1019 158 23 1015 2016 753434268 753433274 0.000000e+00 741.0
22 TraesCS2B01G573600 chr2A 81.689 912 131 17 1089 1984 753464740 753463849 0.000000e+00 726.0
23 TraesCS2B01G573600 chr2A 75.175 286 34 19 844 1093 753467018 753466734 1.890000e-17 100.0
24 TraesCS2B01G573600 chr5D 96.284 296 11 0 544 839 152777819 152777524 1.240000e-133 486.0
25 TraesCS2B01G573600 chr5D 78.607 201 30 10 2287 2485 290065913 290065724 1.450000e-23 121.0
26 TraesCS2B01G573600 chr3D 96.284 296 11 0 544 839 574824136 574824431 1.240000e-133 486.0
27 TraesCS2B01G573600 chr3D 95.876 291 11 1 544 833 590078060 590077770 1.250000e-128 470.0
28 TraesCS2B01G573600 chr3D 95.082 122 5 1 544 664 9115319 9115198 1.090000e-44 191.0
29 TraesCS2B01G573600 chr3D 76.064 188 36 7 2288 2474 507768586 507768765 4.100000e-14 89.8
30 TraesCS2B01G573600 chr1B 94.932 296 15 0 544 839 356880164 356880459 5.830000e-127 464.0
31 TraesCS2B01G573600 chr5B 92.568 296 12 1 544 839 665796697 665796982 1.650000e-112 416.0
32 TraesCS2B01G573600 chr5B 86.408 103 10 4 2287 2388 400091409 400091310 3.140000e-20 110.0
33 TraesCS2B01G573600 chr7B 90.210 286 27 1 552 836 680464179 680463894 3.630000e-99 372.0
34 TraesCS2B01G573600 chr7B 89.262 298 24 6 544 836 404077630 404077924 1.690000e-97 366.0
35 TraesCS2B01G573600 chr7B 78.636 220 47 0 1039 1258 690904502 690904721 2.400000e-31 147.0
36 TraesCS2B01G573600 chr7B 81.905 105 13 5 2775 2875 641255036 641254934 1.910000e-12 84.2
37 TraesCS2B01G573600 chr3B 83.085 201 27 4 2773 2969 262085831 262085634 3.060000e-40 176.0
38 TraesCS2B01G573600 chr3B 85.034 147 22 0 1034 1180 11469613 11469759 1.850000e-32 150.0
39 TraesCS2B01G573600 chr3B 80.663 181 34 1 2287 2467 13408858 13409037 4.010000e-29 139.0
40 TraesCS2B01G573600 chr3B 80.864 162 30 1 2287 2448 12567599 12567439 3.120000e-25 126.0
41 TraesCS2B01G573600 chr1A 94.286 105 6 0 658 762 589856922 589856818 8.560000e-36 161.0
42 TraesCS2B01G573600 chr4D 82.778 180 29 2 2288 2467 473807021 473806844 3.080000e-35 159.0
43 TraesCS2B01G573600 chr4D 81.529 157 28 1 2317 2473 30397411 30397566 8.680000e-26 128.0
44 TraesCS2B01G573600 chr4B 81.281 203 31 6 2774 2972 596371100 596370901 1.110000e-34 158.0
45 TraesCS2B01G573600 chr4A 80.851 188 30 5 2287 2472 701935818 701935635 3.100000e-30 143.0
46 TraesCS2B01G573600 chr4A 85.294 102 9 6 2287 2385 420554228 420554326 1.890000e-17 100.0
47 TraesCS2B01G573600 chr3A 79.126 206 36 5 2772 2974 435754632 435754431 5.190000e-28 135.0
48 TraesCS2B01G573600 chr3A 83.448 145 17 5 2777 2917 16007800 16007941 8.680000e-26 128.0
49 TraesCS2B01G573600 chr3A 76.214 206 40 6 2773 2974 746127067 746127267 1.890000e-17 100.0
50 TraesCS2B01G573600 chr6B 78.744 207 28 13 2283 2485 655841498 655841692 1.120000e-24 124.0
51 TraesCS2B01G573600 chr5A 77.561 205 38 7 2285 2486 426570307 426570108 1.880000e-22 117.0
52 TraesCS2B01G573600 chr5A 90.411 73 4 3 2774 2845 549047041 549046971 3.170000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G573600 chr2B 763447661 763450644 2983 True 2956.0 5511 94.328500 1 2984 2 chr2B.!!$R6 2983
1 TraesCS2B01G573600 chr2B 763492322 763493314 992 True 734.0 734 80.373000 1015 2016 1 chr2B.!!$R5 1001
2 TraesCS2B01G573600 chr2B 763505240 763506775 1535 True 358.8 905 89.204333 89 2087 3 chr2B.!!$R7 1998
3 TraesCS2B01G573600 chr2B 762805067 762805680 613 True 344.0 344 77.617000 1393 1984 1 chr2B.!!$R2 591
4 TraesCS2B01G573600 chr2D 621754417 621755452 1035 True 832.0 832 81.314000 1012 2087 1 chr2D.!!$R3 1075
5 TraesCS2B01G573600 chr2D 621608482 621611556 3074 True 773.4 2037 92.041600 75 2984 5 chr2D.!!$R5 2909
6 TraesCS2B01G573600 chr2D 621589053 621590021 968 True 654.0 654 79.349000 1020 1977 1 chr2D.!!$R2 957
7 TraesCS2B01G573600 chr2D 621841425 621842398 973 False 558.0 558 77.767000 1016 1984 1 chr2D.!!$F1 968
8 TraesCS2B01G573600 chr2A 753433274 753434268 994 True 741.0 741 80.471000 1015 2016 1 chr2A.!!$R1 1001
9 TraesCS2B01G573600 chr2A 753463849 753467018 3169 True 413.0 726 78.432000 844 1984 2 chr2A.!!$R2 1140

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
736 1562 0.030101 GCACGTAACTGCCAGCAAAA 59.97 50.0 0.0 0.0 0.0 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2671 5706 0.250234 CCGGACTCTGAATCTGGCAA 59.75 55.0 0.37 0.0 35.82 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.605640 ACATTTTTAGCTGCATGGTTGT 57.394 36.364 1.02 0.00 0.00 3.32
22 23 4.309099 ACATTTTTAGCTGCATGGTTGTG 58.691 39.130 1.02 0.00 0.00 3.33
23 24 2.437200 TTTTAGCTGCATGGTTGTGC 57.563 45.000 1.02 0.00 45.25 4.57
24 25 0.602562 TTTAGCTGCATGGTTGTGCC 59.397 50.000 1.02 0.00 44.43 5.01
25 26 1.585267 TTAGCTGCATGGTTGTGCCG 61.585 55.000 1.02 0.00 44.43 5.69
26 27 2.746412 TAGCTGCATGGTTGTGCCGT 62.746 55.000 1.02 0.00 44.43 5.68
59 60 7.979115 TTTTGAACATAGTACAAACACAAGC 57.021 32.000 0.00 0.00 34.09 4.01
60 61 5.337219 TGAACATAGTACAAACACAAGCG 57.663 39.130 0.00 0.00 0.00 4.68
61 62 3.806316 ACATAGTACAAACACAAGCGC 57.194 42.857 0.00 0.00 0.00 5.92
62 63 3.399330 ACATAGTACAAACACAAGCGCT 58.601 40.909 2.64 2.64 0.00 5.92
63 64 3.432252 ACATAGTACAAACACAAGCGCTC 59.568 43.478 12.06 0.00 0.00 5.03
64 65 1.948104 AGTACAAACACAAGCGCTCA 58.052 45.000 12.06 0.00 0.00 4.26
65 66 1.597663 AGTACAAACACAAGCGCTCAC 59.402 47.619 12.06 0.00 0.00 3.51
66 67 0.579630 TACAAACACAAGCGCTCACG 59.420 50.000 12.06 4.93 44.07 4.35
67 68 1.351707 CAAACACAAGCGCTCACGT 59.648 52.632 12.06 5.71 42.83 4.49
68 69 0.654472 CAAACACAAGCGCTCACGTC 60.654 55.000 12.06 0.00 42.83 4.34
69 70 1.772063 AAACACAAGCGCTCACGTCC 61.772 55.000 12.06 0.00 42.83 4.79
70 71 3.767230 CACAAGCGCTCACGTCCG 61.767 66.667 12.06 0.00 42.83 4.79
71 72 4.280494 ACAAGCGCTCACGTCCGT 62.280 61.111 12.06 0.00 42.83 4.69
72 73 2.126618 CAAGCGCTCACGTCCGTA 60.127 61.111 12.06 0.00 42.83 4.02
73 74 2.126580 AAGCGCTCACGTCCGTAC 60.127 61.111 12.06 0.00 42.83 3.67
190 289 3.647771 GGGGGCGAGGGTTGAACT 61.648 66.667 0.00 0.00 0.00 3.01
228 327 1.221414 GGAATTCGCCCTCAGAATCG 58.779 55.000 0.00 0.00 37.34 3.34
234 333 1.480545 TCGCCCTCAGAATCGATCAAA 59.519 47.619 0.00 0.00 0.00 2.69
240 339 5.505324 GCCCTCAGAATCGATCAAATCAAAG 60.505 44.000 0.00 0.00 0.00 2.77
251 350 6.073276 TCGATCAAATCAAAGTTGACGAACAT 60.073 34.615 0.00 0.00 40.49 2.71
252 351 6.031729 CGATCAAATCAAAGTTGACGAACATG 59.968 38.462 0.00 0.00 40.49 3.21
253 352 4.975502 TCAAATCAAAGTTGACGAACATGC 59.024 37.500 0.00 0.00 40.49 4.06
314 413 2.612212 TCTTGTTTTCTTCTCACGCACC 59.388 45.455 0.00 0.00 0.00 5.01
406 1232 5.720371 TTAACCTAAGCCTACACGTACAA 57.280 39.130 0.00 0.00 0.00 2.41
407 1233 3.863142 ACCTAAGCCTACACGTACAAG 57.137 47.619 0.00 0.00 0.00 3.16
423 1249 4.848299 CGTACAAGAAACCTACTACGACAC 59.152 45.833 0.00 0.00 32.22 3.67
424 1250 4.924305 ACAAGAAACCTACTACGACACA 57.076 40.909 0.00 0.00 0.00 3.72
425 1251 5.464030 ACAAGAAACCTACTACGACACAT 57.536 39.130 0.00 0.00 0.00 3.21
426 1252 5.850614 ACAAGAAACCTACTACGACACATT 58.149 37.500 0.00 0.00 0.00 2.71
427 1253 6.985117 ACAAGAAACCTACTACGACACATTA 58.015 36.000 0.00 0.00 0.00 1.90
428 1254 7.609056 ACAAGAAACCTACTACGACACATTAT 58.391 34.615 0.00 0.00 0.00 1.28
429 1255 7.758528 ACAAGAAACCTACTACGACACATTATC 59.241 37.037 0.00 0.00 0.00 1.75
430 1256 7.400599 AGAAACCTACTACGACACATTATCA 57.599 36.000 0.00 0.00 0.00 2.15
431 1257 7.481642 AGAAACCTACTACGACACATTATCAG 58.518 38.462 0.00 0.00 0.00 2.90
432 1258 7.338703 AGAAACCTACTACGACACATTATCAGA 59.661 37.037 0.00 0.00 0.00 3.27
433 1259 7.400599 AACCTACTACGACACATTATCAGAA 57.599 36.000 0.00 0.00 0.00 3.02
434 1260 6.793349 ACCTACTACGACACATTATCAGAAC 58.207 40.000 0.00 0.00 0.00 3.01
435 1261 6.376299 ACCTACTACGACACATTATCAGAACA 59.624 38.462 0.00 0.00 0.00 3.18
436 1262 6.691818 CCTACTACGACACATTATCAGAACAC 59.308 42.308 0.00 0.00 0.00 3.32
512 1338 9.708092 GAATTAATCACCTGGTAGGATTAGTAC 57.292 37.037 15.24 9.59 37.67 2.73
539 1365 3.081133 CGATTCGGTTCGGCACTG 58.919 61.111 0.00 0.00 35.50 3.66
553 1379 3.465403 ACTGGCCAGCCTCGCTAG 61.465 66.667 33.06 7.01 36.40 3.42
554 1380 4.232878 CTGGCCAGCCTCGCTAGG 62.233 72.222 22.33 0.00 46.76 3.02
562 1388 3.622514 CCTCGCTAGGCAAGGACT 58.377 61.111 0.00 0.00 35.64 3.85
563 1389 2.808598 CCTCGCTAGGCAAGGACTA 58.191 57.895 0.00 0.00 35.64 2.59
564 1390 0.671251 CCTCGCTAGGCAAGGACTAG 59.329 60.000 1.66 1.66 43.67 2.57
569 1395 2.674796 CTAGGCAAGGACTAGCGTTT 57.325 50.000 0.00 0.00 34.27 3.60
570 1396 2.271800 CTAGGCAAGGACTAGCGTTTG 58.728 52.381 0.00 0.00 34.27 2.93
571 1397 0.321653 AGGCAAGGACTAGCGTTTGG 60.322 55.000 0.00 0.00 0.00 3.28
572 1398 0.605589 GGCAAGGACTAGCGTTTGGT 60.606 55.000 0.00 0.00 0.00 3.67
573 1399 1.338389 GGCAAGGACTAGCGTTTGGTA 60.338 52.381 0.00 0.00 0.00 3.25
574 1400 1.730612 GCAAGGACTAGCGTTTGGTAC 59.269 52.381 0.00 0.00 0.00 3.34
575 1401 2.344025 CAAGGACTAGCGTTTGGTACC 58.656 52.381 4.43 4.43 0.00 3.34
576 1402 0.529378 AGGACTAGCGTTTGGTACCG 59.471 55.000 7.57 0.00 0.00 4.02
583 1409 2.684754 GCGTTTGGTACCGCTAAAAA 57.315 45.000 7.57 0.00 46.08 1.94
601 1427 1.348064 AAAACCTGGCTTTTAGGGGC 58.652 50.000 0.00 0.00 39.71 5.80
606 1432 2.360585 GGCTTTTAGGGGCCAGCT 59.639 61.111 4.39 0.00 46.84 4.24
607 1433 1.613061 GGCTTTTAGGGGCCAGCTA 59.387 57.895 4.39 0.00 46.84 3.32
608 1434 0.466372 GGCTTTTAGGGGCCAGCTAG 60.466 60.000 4.39 0.00 46.84 3.42
609 1435 1.103987 GCTTTTAGGGGCCAGCTAGC 61.104 60.000 6.62 6.62 0.00 3.42
628 1454 2.226602 CCTCGCTAGGCTAGGAAAAC 57.773 55.000 22.40 4.97 43.08 2.43
629 1455 1.202545 CCTCGCTAGGCTAGGAAAACC 60.203 57.143 22.40 4.27 43.08 3.27
630 1456 1.757699 CTCGCTAGGCTAGGAAAACCT 59.242 52.381 22.40 0.00 37.61 3.50
631 1457 1.755380 TCGCTAGGCTAGGAAAACCTC 59.245 52.381 22.40 2.87 34.92 3.85
632 1458 1.536284 CGCTAGGCTAGGAAAACCTCG 60.536 57.143 22.40 10.96 34.92 4.63
633 1459 1.807000 GCTAGGCTAGGAAAACCTCGC 60.807 57.143 22.40 0.00 35.45 5.03
634 1460 0.828677 TAGGCTAGGAAAACCTCGCC 59.171 55.000 19.59 19.59 45.42 5.54
635 1461 1.451567 GGCTAGGAAAACCTCGCCC 60.452 63.158 17.37 3.19 41.14 6.13
636 1462 1.814169 GCTAGGAAAACCTCGCCCG 60.814 63.158 0.00 0.00 0.00 6.13
637 1463 1.595357 CTAGGAAAACCTCGCCCGT 59.405 57.895 0.00 0.00 0.00 5.28
638 1464 0.459759 CTAGGAAAACCTCGCCCGTC 60.460 60.000 0.00 0.00 0.00 4.79
639 1465 2.216750 TAGGAAAACCTCGCCCGTCG 62.217 60.000 0.00 0.00 40.15 5.12
640 1466 3.785499 GAAAACCTCGCCCGTCGC 61.785 66.667 0.00 0.00 38.27 5.19
664 1490 2.354072 CCGAATCGGCTCGCTCTC 60.354 66.667 9.39 0.00 41.17 3.20
665 1491 2.409243 CGAATCGGCTCGCTCTCA 59.591 61.111 0.00 0.00 31.04 3.27
666 1492 1.226688 CGAATCGGCTCGCTCTCAA 60.227 57.895 0.00 0.00 31.04 3.02
667 1493 1.475441 CGAATCGGCTCGCTCTCAAC 61.475 60.000 0.00 0.00 31.04 3.18
668 1494 1.475441 GAATCGGCTCGCTCTCAACG 61.475 60.000 0.00 0.00 0.00 4.10
669 1495 2.890847 AATCGGCTCGCTCTCAACGG 62.891 60.000 0.00 0.00 0.00 4.44
671 1497 4.742201 GGCTCGCTCTCAACGGCA 62.742 66.667 0.00 0.00 0.00 5.69
672 1498 2.738521 GCTCGCTCTCAACGGCAA 60.739 61.111 0.00 0.00 0.00 4.52
673 1499 2.734673 GCTCGCTCTCAACGGCAAG 61.735 63.158 0.00 0.00 0.00 4.01
674 1500 2.734673 CTCGCTCTCAACGGCAAGC 61.735 63.158 0.00 0.00 0.00 4.01
676 1502 2.738521 GCTCTCAACGGCAAGCGA 60.739 61.111 0.00 0.00 0.00 4.93
677 1503 2.734673 GCTCTCAACGGCAAGCGAG 61.735 63.158 0.00 0.00 0.00 5.03
678 1504 2.734673 CTCTCAACGGCAAGCGAGC 61.735 63.158 0.00 0.00 0.00 5.03
679 1505 3.043713 CTCAACGGCAAGCGAGCA 61.044 61.111 5.80 0.00 35.83 4.26
680 1506 2.358615 TCAACGGCAAGCGAGCAT 60.359 55.556 5.80 0.00 35.83 3.79
681 1507 2.202388 CAACGGCAAGCGAGCATG 60.202 61.111 5.80 0.00 35.83 4.06
682 1508 4.107051 AACGGCAAGCGAGCATGC 62.107 61.111 15.80 15.80 39.58 4.06
684 1510 4.824166 CGGCAAGCGAGCATGCAC 62.824 66.667 23.52 13.43 41.74 4.57
685 1511 3.740397 GGCAAGCGAGCATGCACA 61.740 61.111 23.52 0.00 41.74 4.57
686 1512 2.256158 GCAAGCGAGCATGCACAA 59.744 55.556 21.98 0.00 39.99 3.33
687 1513 1.372004 GCAAGCGAGCATGCACAAA 60.372 52.632 21.98 0.00 39.99 2.83
688 1514 0.940519 GCAAGCGAGCATGCACAAAA 60.941 50.000 21.98 0.00 39.99 2.44
689 1515 1.489574 CAAGCGAGCATGCACAAAAA 58.510 45.000 21.98 0.00 37.31 1.94
710 1536 3.343421 GTCCACGTTGACCCGCAC 61.343 66.667 8.55 0.00 0.00 5.34
711 1537 4.953868 TCCACGTTGACCCGCACG 62.954 66.667 0.00 0.00 0.00 5.34
713 1539 2.354891 CACGTTGACCCGCACGTA 60.355 61.111 0.00 0.00 34.25 3.57
714 1540 2.355009 ACGTTGACCCGCACGTAC 60.355 61.111 0.00 0.00 34.25 3.67
715 1541 2.354891 CGTTGACCCGCACGTACA 60.355 61.111 0.00 0.00 0.00 2.90
716 1542 2.651137 CGTTGACCCGCACGTACAC 61.651 63.158 0.00 0.00 0.00 2.90
717 1543 2.354891 TTGACCCGCACGTACACG 60.355 61.111 0.00 0.00 46.33 4.49
728 1554 1.409579 CGTACACGCACGTAACTGC 59.590 57.895 0.00 0.00 37.16 4.40
729 1555 1.777199 GTACACGCACGTAACTGCC 59.223 57.895 0.00 0.00 33.18 4.85
730 1556 0.940519 GTACACGCACGTAACTGCCA 60.941 55.000 0.00 0.00 33.18 4.92
731 1557 0.665068 TACACGCACGTAACTGCCAG 60.665 55.000 0.00 0.00 33.18 4.85
732 1558 3.041940 ACGCACGTAACTGCCAGC 61.042 61.111 0.00 0.00 33.18 4.85
733 1559 3.041351 CGCACGTAACTGCCAGCA 61.041 61.111 0.00 0.00 33.18 4.41
734 1560 2.603247 CGCACGTAACTGCCAGCAA 61.603 57.895 0.00 0.00 33.18 3.91
735 1561 1.652012 GCACGTAACTGCCAGCAAA 59.348 52.632 0.00 0.00 0.00 3.68
736 1562 0.030101 GCACGTAACTGCCAGCAAAA 59.970 50.000 0.00 0.00 0.00 2.44
737 1563 1.925946 GCACGTAACTGCCAGCAAAAG 60.926 52.381 0.00 0.00 0.00 2.27
738 1564 1.333619 CACGTAACTGCCAGCAAAAGT 59.666 47.619 0.00 0.00 0.00 2.66
739 1565 1.333619 ACGTAACTGCCAGCAAAAGTG 59.666 47.619 0.00 0.00 0.00 3.16
740 1566 1.601903 CGTAACTGCCAGCAAAAGTGA 59.398 47.619 0.00 0.00 0.00 3.41
741 1567 2.226437 CGTAACTGCCAGCAAAAGTGAT 59.774 45.455 0.00 0.00 0.00 3.06
742 1568 2.806608 AACTGCCAGCAAAAGTGATG 57.193 45.000 0.00 0.00 40.98 3.07
743 1569 0.316204 ACTGCCAGCAAAAGTGATGC 59.684 50.000 0.00 0.00 39.93 3.91
744 1570 0.315886 CTGCCAGCAAAAGTGATGCA 59.684 50.000 0.00 0.00 46.22 3.96
745 1571 0.970640 TGCCAGCAAAAGTGATGCAT 59.029 45.000 0.00 0.00 46.22 3.96
746 1572 1.067425 TGCCAGCAAAAGTGATGCATC 60.067 47.619 20.14 20.14 46.22 3.91
747 1573 1.738030 GCCAGCAAAAGTGATGCATCC 60.738 52.381 23.67 14.63 46.22 3.51
748 1574 1.546923 CCAGCAAAAGTGATGCATCCA 59.453 47.619 23.67 9.30 46.22 3.41
749 1575 2.028839 CCAGCAAAAGTGATGCATCCAA 60.029 45.455 23.67 3.18 46.22 3.53
750 1576 3.555377 CCAGCAAAAGTGATGCATCCAAA 60.555 43.478 23.67 2.38 46.22 3.28
751 1577 4.250464 CAGCAAAAGTGATGCATCCAAAT 58.750 39.130 23.67 2.49 46.22 2.32
752 1578 4.092821 CAGCAAAAGTGATGCATCCAAATG 59.907 41.667 23.67 15.96 46.22 2.32
773 1599 1.641577 GTAGCTTACGACAAGGCTGG 58.358 55.000 0.00 0.00 36.40 4.85
774 1600 0.108329 TAGCTTACGACAAGGCTGGC 60.108 55.000 0.00 0.00 36.40 4.85
775 1601 1.671054 GCTTACGACAAGGCTGGCA 60.671 57.895 3.38 0.00 0.00 4.92
776 1602 1.234615 GCTTACGACAAGGCTGGCAA 61.235 55.000 3.38 0.00 0.00 4.52
777 1603 1.234821 CTTACGACAAGGCTGGCAAA 58.765 50.000 3.38 0.00 0.00 3.68
778 1604 1.197721 CTTACGACAAGGCTGGCAAAG 59.802 52.381 3.38 0.00 0.00 2.77
789 1615 1.020437 CTGGCAAAGCTTAGCTAGGC 58.980 55.000 19.53 19.53 38.25 3.93
790 1616 0.620556 TGGCAAAGCTTAGCTAGGCT 59.379 50.000 23.58 23.58 38.25 4.58
791 1617 1.837439 TGGCAAAGCTTAGCTAGGCTA 59.163 47.619 28.39 18.62 38.25 3.93
792 1618 2.158900 TGGCAAAGCTTAGCTAGGCTAG 60.159 50.000 28.39 23.39 42.34 3.42
800 1626 2.600769 GCTAGGCTAGCCGGGCTA 60.601 66.667 32.11 26.26 45.95 3.93
808 1634 3.218974 TAGCCGGGCTAGCTTAAGT 57.781 52.632 24.51 0.36 41.83 2.24
809 1635 2.369983 TAGCCGGGCTAGCTTAAGTA 57.630 50.000 24.51 0.97 41.83 2.24
810 1636 1.718280 AGCCGGGCTAGCTTAAGTAT 58.282 50.000 22.47 0.00 37.24 2.12
811 1637 2.885616 AGCCGGGCTAGCTTAAGTATA 58.114 47.619 22.47 0.00 37.24 1.47
812 1638 2.826725 AGCCGGGCTAGCTTAAGTATAG 59.173 50.000 22.47 8.18 37.24 1.31
813 1639 2.674462 GCCGGGCTAGCTTAAGTATAGC 60.674 54.545 23.19 23.19 40.95 2.97
818 1644 3.927854 GCTAGCTTAAGTATAGCCCACC 58.072 50.000 21.78 4.27 39.47 4.61
819 1645 3.306849 GCTAGCTTAAGTATAGCCCACCC 60.307 52.174 21.78 3.77 39.47 4.61
820 1646 2.771688 AGCTTAAGTATAGCCCACCCA 58.228 47.619 4.02 0.00 39.47 4.51
821 1647 2.706190 AGCTTAAGTATAGCCCACCCAG 59.294 50.000 4.02 0.00 39.47 4.45
822 1648 2.810767 GCTTAAGTATAGCCCACCCAGC 60.811 54.545 4.02 0.00 32.45 4.85
823 1649 2.184088 TAAGTATAGCCCACCCAGCA 57.816 50.000 0.00 0.00 0.00 4.41
824 1650 1.295020 AAGTATAGCCCACCCAGCAA 58.705 50.000 0.00 0.00 0.00 3.91
825 1651 1.522900 AGTATAGCCCACCCAGCAAT 58.477 50.000 0.00 0.00 0.00 3.56
826 1652 1.143684 AGTATAGCCCACCCAGCAATG 59.856 52.381 0.00 0.00 0.00 2.82
827 1653 0.178992 TATAGCCCACCCAGCAATGC 60.179 55.000 0.00 0.00 0.00 3.56
828 1654 2.227494 ATAGCCCACCCAGCAATGCA 62.227 55.000 8.35 0.00 0.00 3.96
829 1655 2.438074 TAGCCCACCCAGCAATGCAA 62.438 55.000 8.35 0.00 0.00 4.08
830 1656 2.658422 CCCACCCAGCAATGCAAC 59.342 61.111 8.35 0.00 0.00 4.17
831 1657 2.658422 CCACCCAGCAATGCAACC 59.342 61.111 8.35 0.00 0.00 3.77
832 1658 2.208619 CCACCCAGCAATGCAACCA 61.209 57.895 8.35 0.00 0.00 3.67
833 1659 1.747145 CACCCAGCAATGCAACCAA 59.253 52.632 8.35 0.00 0.00 3.67
834 1660 0.106335 CACCCAGCAATGCAACCAAA 59.894 50.000 8.35 0.00 0.00 3.28
835 1661 0.106521 ACCCAGCAATGCAACCAAAC 59.893 50.000 8.35 0.00 0.00 2.93
836 1662 0.945265 CCCAGCAATGCAACCAAACG 60.945 55.000 8.35 0.00 0.00 3.60
837 1663 0.249405 CCAGCAATGCAACCAAACGT 60.249 50.000 8.35 0.00 0.00 3.99
1097 3982 1.826385 GGATACAAGCTGCACAAGGT 58.174 50.000 1.02 0.00 38.63 3.50
1180 4069 2.828128 CGCTACTACCCCGACGGAC 61.828 68.421 17.49 0.00 34.64 4.79
1469 4373 1.056660 ATGACCGTTGTCCTCAAGGT 58.943 50.000 0.00 0.00 41.01 3.50
1470 4374 0.391597 TGACCGTTGTCCTCAAGGTC 59.608 55.000 15.56 15.56 43.60 3.85
1471 4375 0.391597 GACCGTTGTCCTCAAGGTCA 59.608 55.000 16.59 1.55 43.26 4.02
1472 4376 0.834612 ACCGTTGTCCTCAAGGTCAA 59.165 50.000 4.85 4.85 40.08 3.18
1473 4377 1.202651 ACCGTTGTCCTCAAGGTCAAG 60.203 52.381 8.67 2.41 42.27 3.02
1474 4378 1.512926 CGTTGTCCTCAAGGTCAAGG 58.487 55.000 8.67 10.57 42.27 3.61
1518 4425 1.632018 CCACAAAGGCCCCGGAGATA 61.632 60.000 0.73 0.00 0.00 1.98
1997 4957 6.104665 TCTTCAACTAGCAGAACAGATGATG 58.895 40.000 0.00 0.00 0.00 3.07
2053 5015 3.249559 GCTTGACTAGAGCATGTATTGGC 59.750 47.826 0.00 0.00 39.89 4.52
2054 5016 4.701765 CTTGACTAGAGCATGTATTGGCT 58.298 43.478 0.00 0.00 44.48 4.75
2121 5083 3.466836 TGATTGCTTCAGAAGAACGTGT 58.533 40.909 14.86 0.00 0.00 4.49
2122 5084 4.627058 TGATTGCTTCAGAAGAACGTGTA 58.373 39.130 14.86 0.00 0.00 2.90
2123 5085 5.053811 TGATTGCTTCAGAAGAACGTGTAA 58.946 37.500 14.86 0.00 0.00 2.41
2174 5207 9.862371 GTTTATAGATGATATGTCGATGAACCT 57.138 33.333 0.00 0.00 0.00 3.50
2206 5239 1.110442 CAGCTTCAGAGTCCGGATCT 58.890 55.000 7.81 9.06 0.00 2.75
2209 5242 1.470632 GCTTCAGAGTCCGGATCTGTG 60.471 57.143 28.10 23.78 43.79 3.66
2355 5389 4.345859 AGTGACCCACGTGAAAAATAGA 57.654 40.909 19.30 0.00 39.64 1.98
2358 5392 5.238650 AGTGACCCACGTGAAAAATAGAAAG 59.761 40.000 19.30 0.00 39.64 2.62
2380 5414 8.991243 AAAGTGGTGGTTTTAAAAGTTTAGTC 57.009 30.769 0.00 0.00 0.00 2.59
2389 5423 6.527570 TTTAAAAGTTTAGTCCCACCCCTA 57.472 37.500 0.00 0.00 0.00 3.53
2393 5427 2.307980 AGTTTAGTCCCACCCCTAAAGC 59.692 50.000 0.00 0.00 34.69 3.51
2404 5438 1.452833 CCTAAAGCTGAGGGGCTGC 60.453 63.158 6.99 0.00 42.24 5.25
2444 5478 2.370849 GGGTTCTCTCCACCACACTAAA 59.629 50.000 0.00 0.00 35.80 1.85
2474 5508 7.895975 TGTTGATGAGAGAAATACAAGACAG 57.104 36.000 0.00 0.00 0.00 3.51
2475 5509 7.670364 TGTTGATGAGAGAAATACAAGACAGA 58.330 34.615 0.00 0.00 0.00 3.41
2476 5510 7.600375 TGTTGATGAGAGAAATACAAGACAGAC 59.400 37.037 0.00 0.00 0.00 3.51
2477 5511 7.232118 TGATGAGAGAAATACAAGACAGACA 57.768 36.000 0.00 0.00 0.00 3.41
2478 5512 7.845037 TGATGAGAGAAATACAAGACAGACAT 58.155 34.615 0.00 0.00 0.00 3.06
2488 5523 2.666190 ACAGACATGCGCGCTTGT 60.666 55.556 41.47 41.47 37.09 3.16
2494 5529 1.510623 CATGCGCGCTTGTCTTGTC 60.511 57.895 31.93 2.52 0.00 3.18
2574 5609 3.416277 CGAAAACATGTGATTACTGGCG 58.584 45.455 0.00 0.00 0.00 5.69
2576 5611 1.819928 AACATGTGATTACTGGCGCA 58.180 45.000 10.83 0.00 0.00 6.09
2594 5629 4.208686 GAGTGGAGGCGCCGGTAG 62.209 72.222 23.20 0.00 40.66 3.18
2601 5636 0.670162 GAGGCGCCGGTAGTATAACA 59.330 55.000 23.20 0.00 0.00 2.41
2626 5661 4.963237 GTGATAAATCTCACTAGCAGCG 57.037 45.455 0.00 0.00 41.87 5.18
2656 5691 2.365635 ACCGCTAGCTGGGTGGAT 60.366 61.111 23.40 8.48 37.73 3.41
2657 5692 2.109799 CCGCTAGCTGGGTGGATG 59.890 66.667 13.93 0.00 36.54 3.51
2658 5693 2.434843 CCGCTAGCTGGGTGGATGA 61.435 63.158 13.93 0.00 36.54 2.92
2659 5694 1.522092 CGCTAGCTGGGTGGATGAA 59.478 57.895 13.93 0.00 0.00 2.57
2660 5695 0.811616 CGCTAGCTGGGTGGATGAAC 60.812 60.000 13.93 0.00 0.00 3.18
2661 5696 0.464554 GCTAGCTGGGTGGATGAACC 60.465 60.000 7.70 0.00 39.71 3.62
2662 5697 1.207791 CTAGCTGGGTGGATGAACCT 58.792 55.000 0.00 0.00 40.35 3.50
2663 5698 2.398588 CTAGCTGGGTGGATGAACCTA 58.601 52.381 0.00 0.00 40.35 3.08
2664 5699 1.668826 AGCTGGGTGGATGAACCTAA 58.331 50.000 0.00 0.00 40.35 2.69
2665 5700 2.208872 AGCTGGGTGGATGAACCTAAT 58.791 47.619 0.00 0.00 40.35 1.73
2666 5701 2.582636 AGCTGGGTGGATGAACCTAATT 59.417 45.455 0.00 0.00 40.35 1.40
2667 5702 3.785887 AGCTGGGTGGATGAACCTAATTA 59.214 43.478 0.00 0.00 40.35 1.40
2668 5703 4.229582 AGCTGGGTGGATGAACCTAATTAA 59.770 41.667 0.00 0.00 40.35 1.40
2669 5704 5.103515 AGCTGGGTGGATGAACCTAATTAAT 60.104 40.000 0.00 0.00 40.35 1.40
2670 5705 5.598417 GCTGGGTGGATGAACCTAATTAATT 59.402 40.000 5.89 5.89 40.35 1.40
2671 5706 6.098266 GCTGGGTGGATGAACCTAATTAATTT 59.902 38.462 5.91 0.00 40.35 1.82
2672 5707 7.364673 GCTGGGTGGATGAACCTAATTAATTTT 60.365 37.037 5.91 0.00 40.35 1.82
2673 5708 7.846066 TGGGTGGATGAACCTAATTAATTTTG 58.154 34.615 5.91 0.81 40.35 2.44
2674 5709 6.761242 GGGTGGATGAACCTAATTAATTTTGC 59.239 38.462 5.91 0.00 40.35 3.68
2675 5710 6.761242 GGTGGATGAACCTAATTAATTTTGCC 59.239 38.462 5.91 0.00 39.86 4.52
2676 5711 7.327214 GTGGATGAACCTAATTAATTTTGCCA 58.673 34.615 5.91 1.49 39.86 4.92
2677 5712 7.492344 GTGGATGAACCTAATTAATTTTGCCAG 59.508 37.037 5.91 0.00 39.86 4.85
2678 5713 7.398618 TGGATGAACCTAATTAATTTTGCCAGA 59.601 33.333 5.91 0.00 39.86 3.86
2679 5714 8.424133 GGATGAACCTAATTAATTTTGCCAGAT 58.576 33.333 5.91 0.00 35.41 2.90
2680 5715 9.822185 GATGAACCTAATTAATTTTGCCAGATT 57.178 29.630 5.91 0.00 0.00 2.40
2681 5716 9.822185 ATGAACCTAATTAATTTTGCCAGATTC 57.178 29.630 5.91 0.89 0.00 2.52
2682 5717 8.811017 TGAACCTAATTAATTTTGCCAGATTCA 58.189 29.630 5.91 3.54 0.00 2.57
2683 5718 9.305925 GAACCTAATTAATTTTGCCAGATTCAG 57.694 33.333 5.91 0.00 0.00 3.02
2684 5719 8.593945 ACCTAATTAATTTTGCCAGATTCAGA 57.406 30.769 5.91 0.00 0.00 3.27
2685 5720 8.689972 ACCTAATTAATTTTGCCAGATTCAGAG 58.310 33.333 5.91 0.00 0.00 3.35
2686 5721 8.689972 CCTAATTAATTTTGCCAGATTCAGAGT 58.310 33.333 5.91 0.00 0.00 3.24
2687 5722 9.727627 CTAATTAATTTTGCCAGATTCAGAGTC 57.272 33.333 5.91 0.00 0.00 3.36
2688 5723 6.515272 TTAATTTTGCCAGATTCAGAGTCC 57.485 37.500 0.00 0.00 0.00 3.85
2689 5724 2.099141 TTTGCCAGATTCAGAGTCCG 57.901 50.000 0.00 0.00 0.00 4.79
2690 5725 0.250234 TTGCCAGATTCAGAGTCCGG 59.750 55.000 0.00 0.00 0.00 5.14
2691 5726 0.614697 TGCCAGATTCAGAGTCCGGA 60.615 55.000 0.00 0.00 0.00 5.14
2692 5727 0.755686 GCCAGATTCAGAGTCCGGAT 59.244 55.000 7.81 0.00 0.00 4.18
2693 5728 1.270041 GCCAGATTCAGAGTCCGGATC 60.270 57.143 7.81 6.61 0.00 3.36
2694 5729 1.342819 CCAGATTCAGAGTCCGGATCC 59.657 57.143 7.81 0.00 0.00 3.36
2695 5730 1.000827 CAGATTCAGAGTCCGGATCCG 60.001 57.143 27.65 27.65 39.44 4.18
2696 5731 1.033574 GATTCAGAGTCCGGATCCGT 58.966 55.000 31.22 14.64 37.81 4.69
2697 5732 0.747255 ATTCAGAGTCCGGATCCGTG 59.253 55.000 31.22 22.15 37.81 4.94
2698 5733 1.320344 TTCAGAGTCCGGATCCGTGG 61.320 60.000 31.22 17.96 37.81 4.94
2699 5734 2.052690 CAGAGTCCGGATCCGTGGT 61.053 63.158 31.22 15.68 37.81 4.16
2700 5735 1.753463 AGAGTCCGGATCCGTGGTC 60.753 63.158 31.22 22.52 37.81 4.02
2701 5736 3.122250 GAGTCCGGATCCGTGGTCG 62.122 68.421 31.22 16.48 37.81 4.79
2702 5737 3.136123 GTCCGGATCCGTGGTCGA 61.136 66.667 31.22 18.54 39.71 4.20
2703 5738 3.136123 TCCGGATCCGTGGTCGAC 61.136 66.667 31.22 7.13 39.71 4.20
2704 5739 3.138798 CCGGATCCGTGGTCGACT 61.139 66.667 31.22 0.00 39.71 4.18
2705 5740 2.707849 CCGGATCCGTGGTCGACTT 61.708 63.158 31.22 0.00 39.71 3.01
2706 5741 1.516386 CGGATCCGTGGTCGACTTG 60.516 63.158 26.35 5.41 39.71 3.16
2707 5742 1.590147 GGATCCGTGGTCGACTTGT 59.410 57.895 16.46 0.00 39.71 3.16
2708 5743 0.813184 GGATCCGTGGTCGACTTGTA 59.187 55.000 16.46 0.00 39.71 2.41
2709 5744 1.203052 GGATCCGTGGTCGACTTGTAA 59.797 52.381 16.46 0.00 39.71 2.41
2710 5745 2.353011 GGATCCGTGGTCGACTTGTAAA 60.353 50.000 16.46 0.00 39.71 2.01
2711 5746 2.138596 TCCGTGGTCGACTTGTAAAC 57.861 50.000 16.46 4.08 39.71 2.01
2712 5747 1.408340 TCCGTGGTCGACTTGTAAACA 59.592 47.619 16.46 0.00 39.71 2.83
2713 5748 2.036217 TCCGTGGTCGACTTGTAAACAT 59.964 45.455 16.46 0.00 39.71 2.71
2714 5749 2.803956 CCGTGGTCGACTTGTAAACATT 59.196 45.455 16.46 0.00 39.71 2.71
2715 5750 3.249080 CCGTGGTCGACTTGTAAACATTT 59.751 43.478 16.46 0.00 39.71 2.32
2716 5751 4.448395 CCGTGGTCGACTTGTAAACATTTA 59.552 41.667 16.46 0.00 39.71 1.40
2717 5752 5.389098 CCGTGGTCGACTTGTAAACATTTAG 60.389 44.000 16.46 0.00 39.71 1.85
2718 5753 5.176223 CGTGGTCGACTTGTAAACATTTAGT 59.824 40.000 16.46 0.00 39.71 2.24
2719 5754 6.292488 CGTGGTCGACTTGTAAACATTTAGTT 60.292 38.462 16.46 0.00 39.97 2.24
2720 5755 7.727378 CGTGGTCGACTTGTAAACATTTAGTTT 60.727 37.037 16.46 0.00 45.09 2.66
2745 5780 8.604640 TTTTCATCATTTGCATTTTGCTTAGA 57.395 26.923 0.75 0.00 45.31 2.10
2746 5781 7.821595 TTCATCATTTGCATTTTGCTTAGAG 57.178 32.000 0.75 0.00 45.31 2.43
2747 5782 6.334989 TCATCATTTGCATTTTGCTTAGAGG 58.665 36.000 0.75 0.00 45.31 3.69
2748 5783 5.075858 TCATTTGCATTTTGCTTAGAGGG 57.924 39.130 0.75 0.00 45.31 4.30
2749 5784 4.771577 TCATTTGCATTTTGCTTAGAGGGA 59.228 37.500 0.75 0.00 45.31 4.20
2750 5785 5.422970 TCATTTGCATTTTGCTTAGAGGGAT 59.577 36.000 0.75 0.00 45.31 3.85
2751 5786 5.743636 TTTGCATTTTGCTTAGAGGGATT 57.256 34.783 0.75 0.00 45.31 3.01
2752 5787 4.724074 TGCATTTTGCTTAGAGGGATTG 57.276 40.909 0.75 0.00 45.31 2.67
2753 5788 4.088634 TGCATTTTGCTTAGAGGGATTGT 58.911 39.130 0.75 0.00 45.31 2.71
2754 5789 4.527816 TGCATTTTGCTTAGAGGGATTGTT 59.472 37.500 0.75 0.00 45.31 2.83
2755 5790 4.866486 GCATTTTGCTTAGAGGGATTGTTG 59.134 41.667 0.00 0.00 40.96 3.33
2756 5791 5.336690 GCATTTTGCTTAGAGGGATTGTTGA 60.337 40.000 0.00 0.00 40.96 3.18
2757 5792 6.628844 GCATTTTGCTTAGAGGGATTGTTGAT 60.629 38.462 0.00 0.00 40.96 2.57
2758 5793 6.916360 TTTTGCTTAGAGGGATTGTTGATT 57.084 33.333 0.00 0.00 0.00 2.57
2759 5794 8.469200 CATTTTGCTTAGAGGGATTGTTGATTA 58.531 33.333 0.00 0.00 0.00 1.75
2760 5795 8.593945 TTTTGCTTAGAGGGATTGTTGATTAT 57.406 30.769 0.00 0.00 0.00 1.28
2761 5796 8.593945 TTTGCTTAGAGGGATTGTTGATTATT 57.406 30.769 0.00 0.00 0.00 1.40
2762 5797 8.593945 TTGCTTAGAGGGATTGTTGATTATTT 57.406 30.769 0.00 0.00 0.00 1.40
2763 5798 8.225603 TGCTTAGAGGGATTGTTGATTATTTC 57.774 34.615 0.00 0.00 0.00 2.17
2764 5799 7.833682 TGCTTAGAGGGATTGTTGATTATTTCA 59.166 33.333 0.00 0.00 0.00 2.69
2765 5800 8.686334 GCTTAGAGGGATTGTTGATTATTTCAA 58.314 33.333 0.00 0.00 42.09 2.69
2795 5830 5.337578 TGTTAGAAATAAATGGGCTTGGC 57.662 39.130 0.00 0.00 0.00 4.52
2808 5843 3.348647 GGCTTGGCCCATTAACAATTT 57.651 42.857 0.00 0.00 44.06 1.82
2809 5844 3.684908 GGCTTGGCCCATTAACAATTTT 58.315 40.909 0.00 0.00 44.06 1.82
2810 5845 4.078537 GGCTTGGCCCATTAACAATTTTT 58.921 39.130 0.00 0.00 44.06 1.94
2811 5846 4.082841 GGCTTGGCCCATTAACAATTTTTG 60.083 41.667 0.00 0.00 44.06 2.44
2812 5847 4.759183 GCTTGGCCCATTAACAATTTTTGA 59.241 37.500 0.00 0.00 0.00 2.69
2813 5848 5.240403 GCTTGGCCCATTAACAATTTTTGAA 59.760 36.000 0.00 0.00 0.00 2.69
2814 5849 6.238869 GCTTGGCCCATTAACAATTTTTGAAA 60.239 34.615 0.00 0.00 0.00 2.69
2815 5850 7.523544 GCTTGGCCCATTAACAATTTTTGAAAT 60.524 33.333 0.00 0.00 0.00 2.17
2816 5851 7.446001 TGGCCCATTAACAATTTTTGAAATC 57.554 32.000 0.00 0.00 0.00 2.17
2817 5852 7.230027 TGGCCCATTAACAATTTTTGAAATCT 58.770 30.769 0.00 0.00 0.00 2.40
2818 5853 7.390162 TGGCCCATTAACAATTTTTGAAATCTC 59.610 33.333 0.00 0.00 0.00 2.75
2819 5854 7.390162 GGCCCATTAACAATTTTTGAAATCTCA 59.610 33.333 0.00 0.00 0.00 3.27
2820 5855 8.782144 GCCCATTAACAATTTTTGAAATCTCAA 58.218 29.630 0.00 0.00 39.87 3.02
2831 5866 5.710513 TTGAAATCTCAAAGTGACCCATG 57.289 39.130 0.00 0.00 38.65 3.66
2832 5867 4.728772 TGAAATCTCAAAGTGACCCATGT 58.271 39.130 0.00 0.00 0.00 3.21
2833 5868 4.520111 TGAAATCTCAAAGTGACCCATGTG 59.480 41.667 0.00 0.00 0.00 3.21
2834 5869 4.371624 AATCTCAAAGTGACCCATGTGA 57.628 40.909 0.00 0.00 0.00 3.58
2835 5870 3.855255 TCTCAAAGTGACCCATGTGAA 57.145 42.857 0.00 0.00 0.00 3.18
2836 5871 3.476552 TCTCAAAGTGACCCATGTGAAC 58.523 45.455 0.00 0.00 0.00 3.18
2837 5872 3.118075 TCTCAAAGTGACCCATGTGAACA 60.118 43.478 0.00 0.00 0.00 3.18
2838 5873 3.625853 TCAAAGTGACCCATGTGAACAA 58.374 40.909 0.00 0.00 0.00 2.83
2839 5874 4.214310 TCAAAGTGACCCATGTGAACAAT 58.786 39.130 0.00 0.00 0.00 2.71
2840 5875 5.380900 TCAAAGTGACCCATGTGAACAATA 58.619 37.500 0.00 0.00 0.00 1.90
2841 5876 5.473162 TCAAAGTGACCCATGTGAACAATAG 59.527 40.000 0.00 0.00 0.00 1.73
2842 5877 3.347216 AGTGACCCATGTGAACAATAGC 58.653 45.455 0.00 0.00 0.00 2.97
2843 5878 2.423538 GTGACCCATGTGAACAATAGCC 59.576 50.000 0.00 0.00 0.00 3.93
2844 5879 2.040947 TGACCCATGTGAACAATAGCCA 59.959 45.455 0.00 0.00 0.00 4.75
2845 5880 2.684881 GACCCATGTGAACAATAGCCAG 59.315 50.000 0.00 0.00 0.00 4.85
2846 5881 2.041620 ACCCATGTGAACAATAGCCAGT 59.958 45.455 0.00 0.00 0.00 4.00
2847 5882 2.424601 CCCATGTGAACAATAGCCAGTG 59.575 50.000 0.00 0.00 0.00 3.66
2848 5883 2.424601 CCATGTGAACAATAGCCAGTGG 59.575 50.000 4.20 4.20 0.00 4.00
2849 5884 2.949177 TGTGAACAATAGCCAGTGGT 57.051 45.000 11.74 0.00 0.00 4.16
2850 5885 2.503331 TGTGAACAATAGCCAGTGGTG 58.497 47.619 11.74 3.28 0.00 4.17
2852 5887 1.423541 TGAACAATAGCCAGTGGTGGT 59.576 47.619 11.74 0.00 46.96 4.16
2853 5888 2.158534 TGAACAATAGCCAGTGGTGGTT 60.159 45.455 11.74 8.22 46.96 3.67
2854 5889 2.200373 ACAATAGCCAGTGGTGGTTC 57.800 50.000 11.74 0.00 46.96 3.62
2855 5890 1.705186 ACAATAGCCAGTGGTGGTTCT 59.295 47.619 11.74 0.93 46.96 3.01
2856 5891 2.910319 ACAATAGCCAGTGGTGGTTCTA 59.090 45.455 11.74 3.42 46.96 2.10
2857 5892 3.329520 ACAATAGCCAGTGGTGGTTCTAA 59.670 43.478 11.74 0.00 46.96 2.10
2858 5893 4.202524 ACAATAGCCAGTGGTGGTTCTAAA 60.203 41.667 11.74 0.00 46.96 1.85
2859 5894 4.862641 ATAGCCAGTGGTGGTTCTAAAT 57.137 40.909 11.74 0.00 46.96 1.40
2860 5895 2.795329 AGCCAGTGGTGGTTCTAAATG 58.205 47.619 11.74 0.00 46.96 2.32
2861 5896 2.108250 AGCCAGTGGTGGTTCTAAATGT 59.892 45.455 11.74 0.00 46.96 2.71
2862 5897 2.890945 GCCAGTGGTGGTTCTAAATGTT 59.109 45.455 11.74 0.00 46.96 2.71
2863 5898 3.320826 GCCAGTGGTGGTTCTAAATGTTT 59.679 43.478 11.74 0.00 46.96 2.83
2864 5899 4.521256 GCCAGTGGTGGTTCTAAATGTTTA 59.479 41.667 11.74 0.00 46.96 2.01
2865 5900 5.335661 GCCAGTGGTGGTTCTAAATGTTTAG 60.336 44.000 11.74 6.24 46.96 1.85
2866 5901 5.768164 CCAGTGGTGGTTCTAAATGTTTAGT 59.232 40.000 0.00 0.00 39.02 2.24
2867 5902 6.072673 CCAGTGGTGGTTCTAAATGTTTAGTC 60.073 42.308 0.00 6.99 39.02 2.59
2868 5903 6.002082 AGTGGTGGTTCTAAATGTTTAGTCC 58.998 40.000 11.18 13.65 40.69 3.85
2869 5904 5.182570 GTGGTGGTTCTAAATGTTTAGTCCC 59.817 44.000 11.18 11.80 40.69 4.46
2870 5905 5.163077 TGGTGGTTCTAAATGTTTAGTCCCA 60.163 40.000 15.40 15.40 40.69 4.37
2871 5906 5.182570 GGTGGTTCTAAATGTTTAGTCCCAC 59.817 44.000 26.46 26.46 46.72 4.61
2872 5907 5.766174 GTGGTTCTAAATGTTTAGTCCCACA 59.234 40.000 27.74 15.20 46.70 4.17
2873 5908 5.766174 TGGTTCTAAATGTTTAGTCCCACAC 59.234 40.000 15.40 5.96 40.69 3.82
2874 5909 5.182570 GGTTCTAAATGTTTAGTCCCACACC 59.817 44.000 11.18 6.67 40.69 4.16
2875 5910 5.836024 TCTAAATGTTTAGTCCCACACCT 57.164 39.130 11.18 0.00 40.69 4.00
2876 5911 5.801380 TCTAAATGTTTAGTCCCACACCTC 58.199 41.667 11.18 0.00 40.69 3.85
2877 5912 3.434940 AATGTTTAGTCCCACACCTCC 57.565 47.619 0.00 0.00 0.00 4.30
2878 5913 1.809133 TGTTTAGTCCCACACCTCCA 58.191 50.000 0.00 0.00 0.00 3.86
2879 5914 2.128535 TGTTTAGTCCCACACCTCCAA 58.871 47.619 0.00 0.00 0.00 3.53
2880 5915 2.510382 TGTTTAGTCCCACACCTCCAAA 59.490 45.455 0.00 0.00 0.00 3.28
2881 5916 3.146847 GTTTAGTCCCACACCTCCAAAG 58.853 50.000 0.00 0.00 0.00 2.77
2882 5917 2.112279 TAGTCCCACACCTCCAAAGT 57.888 50.000 0.00 0.00 0.00 2.66
2883 5918 1.222567 AGTCCCACACCTCCAAAGTT 58.777 50.000 0.00 0.00 0.00 2.66
2884 5919 1.569072 AGTCCCACACCTCCAAAGTTT 59.431 47.619 0.00 0.00 0.00 2.66
2885 5920 2.781174 AGTCCCACACCTCCAAAGTTTA 59.219 45.455 0.00 0.00 0.00 2.01
2886 5921 2.882761 GTCCCACACCTCCAAAGTTTAC 59.117 50.000 0.00 0.00 0.00 2.01
2887 5922 2.781174 TCCCACACCTCCAAAGTTTACT 59.219 45.455 0.00 0.00 0.00 2.24
2888 5923 2.884639 CCCACACCTCCAAAGTTTACTG 59.115 50.000 0.00 0.00 0.00 2.74
2889 5924 3.551846 CCACACCTCCAAAGTTTACTGT 58.448 45.455 0.00 0.00 0.00 3.55
2890 5925 3.315191 CCACACCTCCAAAGTTTACTGTG 59.685 47.826 0.00 0.00 0.00 3.66
2891 5926 4.196193 CACACCTCCAAAGTTTACTGTGA 58.804 43.478 1.55 0.00 32.93 3.58
2892 5927 4.273480 CACACCTCCAAAGTTTACTGTGAG 59.727 45.833 1.55 0.34 32.93 3.51
2893 5928 4.163458 ACACCTCCAAAGTTTACTGTGAGA 59.837 41.667 1.55 0.00 32.93 3.27
2894 5929 4.511826 CACCTCCAAAGTTTACTGTGAGAC 59.488 45.833 1.55 0.00 32.93 3.36
2895 5930 4.409247 ACCTCCAAAGTTTACTGTGAGACT 59.591 41.667 1.55 0.00 32.93 3.24
2896 5931 5.104485 ACCTCCAAAGTTTACTGTGAGACTT 60.104 40.000 1.55 0.00 32.93 3.01
2897 5932 5.823045 CCTCCAAAGTTTACTGTGAGACTTT 59.177 40.000 1.55 10.30 41.55 2.66
2898 5933 6.318900 CCTCCAAAGTTTACTGTGAGACTTTT 59.681 38.462 12.30 0.00 39.55 2.27
2899 5934 7.148069 CCTCCAAAGTTTACTGTGAGACTTTTT 60.148 37.037 12.30 0.00 39.55 1.94
2924 5959 4.985538 ATAGTAGGTTCTCTCAACCACG 57.014 45.455 6.30 0.00 42.69 4.94
2925 5960 1.272769 AGTAGGTTCTCTCAACCACGC 59.727 52.381 6.30 0.00 42.69 5.34
2926 5961 1.272769 GTAGGTTCTCTCAACCACGCT 59.727 52.381 6.30 0.00 42.69 5.07
2927 5962 1.629043 AGGTTCTCTCAACCACGCTA 58.371 50.000 6.30 0.00 42.69 4.26
2928 5963 1.968493 AGGTTCTCTCAACCACGCTAA 59.032 47.619 6.30 0.00 42.69 3.09
2929 5964 2.028930 AGGTTCTCTCAACCACGCTAAG 60.029 50.000 6.30 0.00 42.69 2.18
2930 5965 2.288886 GGTTCTCTCAACCACGCTAAGT 60.289 50.000 0.00 0.00 40.03 2.24
2945 5980 6.149129 ACGCTAAGTGATATGTTGATGAGA 57.851 37.500 0.00 0.00 0.00 3.27
2946 5981 6.212235 ACGCTAAGTGATATGTTGATGAGAG 58.788 40.000 0.00 0.00 0.00 3.20
2947 5982 6.039829 ACGCTAAGTGATATGTTGATGAGAGA 59.960 38.462 0.00 0.00 0.00 3.10
2948 5983 6.920210 CGCTAAGTGATATGTTGATGAGAGAA 59.080 38.462 0.00 0.00 0.00 2.87
2949 5984 7.436376 CGCTAAGTGATATGTTGATGAGAGAAA 59.564 37.037 0.00 0.00 0.00 2.52
2950 5985 9.270640 GCTAAGTGATATGTTGATGAGAGAAAT 57.729 33.333 0.00 0.00 0.00 2.17
2958 5993 9.995003 ATATGTTGATGAGAGAAATAGAAGACC 57.005 33.333 0.00 0.00 0.00 3.85
2959 5994 7.244886 TGTTGATGAGAGAAATAGAAGACCA 57.755 36.000 0.00 0.00 0.00 4.02
2960 5995 7.099764 TGTTGATGAGAGAAATAGAAGACCAC 58.900 38.462 0.00 0.00 0.00 4.16
2961 5996 6.857437 TGATGAGAGAAATAGAAGACCACA 57.143 37.500 0.00 0.00 0.00 4.17
2962 5997 6.634805 TGATGAGAGAAATAGAAGACCACAC 58.365 40.000 0.00 0.00 0.00 3.82
2963 5998 5.060662 TGAGAGAAATAGAAGACCACACG 57.939 43.478 0.00 0.00 0.00 4.49
2964 5999 3.851098 AGAGAAATAGAAGACCACACGC 58.149 45.455 0.00 0.00 0.00 5.34
2965 6000 2.599082 GAGAAATAGAAGACCACACGCG 59.401 50.000 3.53 3.53 0.00 6.01
2966 6001 1.060698 GAAATAGAAGACCACACGCGC 59.939 52.381 5.73 0.00 0.00 6.86
2967 6002 1.076533 AATAGAAGACCACACGCGCG 61.077 55.000 30.96 30.96 0.00 6.86
2983 6018 3.250323 CGCGCTCGTCATGTCCAG 61.250 66.667 5.56 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.309099 CACAACCATGCAGCTAAAAATGT 58.691 39.130 0.00 0.00 0.00 2.71
1 2 3.123959 GCACAACCATGCAGCTAAAAATG 59.876 43.478 0.00 0.00 45.39 2.32
2 3 3.328505 GCACAACCATGCAGCTAAAAAT 58.671 40.909 0.00 0.00 45.39 1.82
3 4 2.753296 GCACAACCATGCAGCTAAAAA 58.247 42.857 0.00 0.00 45.39 1.94
4 5 2.437200 GCACAACCATGCAGCTAAAA 57.563 45.000 0.00 0.00 45.39 1.52
12 13 4.722855 GCCACGGCACAACCATGC 62.723 66.667 2.36 0.00 45.34 4.06
34 35 7.219154 CGCTTGTGTTTGTACTATGTTCAAAAA 59.781 33.333 4.55 0.00 35.35 1.94
35 36 6.689241 CGCTTGTGTTTGTACTATGTTCAAAA 59.311 34.615 4.55 0.00 35.35 2.44
36 37 6.195868 CGCTTGTGTTTGTACTATGTTCAAA 58.804 36.000 0.00 0.00 32.18 2.69
37 38 5.743467 CGCTTGTGTTTGTACTATGTTCAA 58.257 37.500 0.00 0.00 0.00 2.69
38 39 4.319190 GCGCTTGTGTTTGTACTATGTTCA 60.319 41.667 0.00 0.00 0.00 3.18
39 40 4.084013 AGCGCTTGTGTTTGTACTATGTTC 60.084 41.667 2.64 0.00 0.00 3.18
40 41 3.813166 AGCGCTTGTGTTTGTACTATGTT 59.187 39.130 2.64 0.00 0.00 2.71
41 42 3.399330 AGCGCTTGTGTTTGTACTATGT 58.601 40.909 2.64 0.00 0.00 2.29
42 43 3.431912 TGAGCGCTTGTGTTTGTACTATG 59.568 43.478 13.26 0.00 0.00 2.23
43 44 3.432252 GTGAGCGCTTGTGTTTGTACTAT 59.568 43.478 13.26 0.00 0.00 2.12
44 45 2.798283 GTGAGCGCTTGTGTTTGTACTA 59.202 45.455 13.26 0.00 0.00 1.82
45 46 1.597663 GTGAGCGCTTGTGTTTGTACT 59.402 47.619 13.26 0.00 0.00 2.73
46 47 1.656429 CGTGAGCGCTTGTGTTTGTAC 60.656 52.381 13.26 0.00 0.00 2.90
47 48 0.579630 CGTGAGCGCTTGTGTTTGTA 59.420 50.000 13.26 0.00 0.00 2.41
48 49 1.351707 CGTGAGCGCTTGTGTTTGT 59.648 52.632 13.26 0.00 0.00 2.83
49 50 0.654472 GACGTGAGCGCTTGTGTTTG 60.654 55.000 13.26 0.00 42.83 2.93
50 51 1.641677 GACGTGAGCGCTTGTGTTT 59.358 52.632 13.26 0.00 42.83 2.83
51 52 2.244651 GGACGTGAGCGCTTGTGTT 61.245 57.895 13.26 0.00 42.83 3.32
52 53 2.661866 GGACGTGAGCGCTTGTGT 60.662 61.111 13.26 10.53 42.83 3.72
53 54 3.767230 CGGACGTGAGCGCTTGTG 61.767 66.667 13.26 6.78 42.83 3.33
54 55 2.911484 TACGGACGTGAGCGCTTGT 61.911 57.895 13.26 11.37 42.83 3.16
55 56 2.126618 TACGGACGTGAGCGCTTG 60.127 61.111 13.26 7.62 42.83 4.01
56 57 2.126580 GTACGGACGTGAGCGCTT 60.127 61.111 13.26 0.00 42.83 4.68
57 58 3.054503 AGTACGGACGTGAGCGCT 61.055 61.111 11.27 11.27 42.83 5.92
58 59 2.874780 CAGTACGGACGTGAGCGC 60.875 66.667 7.73 0.00 42.83 5.92
59 60 1.796355 CACAGTACGGACGTGAGCG 60.796 63.158 14.95 0.00 44.93 5.03
60 61 2.087009 GCACAGTACGGACGTGAGC 61.087 63.158 21.63 13.27 34.23 4.26
61 62 1.443872 GGCACAGTACGGACGTGAG 60.444 63.158 21.63 8.19 34.23 3.51
62 63 2.646719 GGCACAGTACGGACGTGA 59.353 61.111 21.63 0.00 34.23 4.35
63 64 2.803670 CGGCACAGTACGGACGTG 60.804 66.667 15.53 15.53 34.95 4.49
64 65 3.289834 ACGGCACAGTACGGACGT 61.290 61.111 9.79 9.79 0.00 4.34
65 66 2.803670 CACGGCACAGTACGGACG 60.804 66.667 8.60 8.60 0.00 4.79
66 67 1.731969 GTCACGGCACAGTACGGAC 60.732 63.158 0.00 0.00 0.00 4.79
67 68 1.529152 ATGTCACGGCACAGTACGGA 61.529 55.000 0.00 0.00 0.00 4.69
68 69 0.669318 AATGTCACGGCACAGTACGG 60.669 55.000 2.35 0.00 0.00 4.02
69 70 1.144969 AAATGTCACGGCACAGTACG 58.855 50.000 0.00 0.00 0.00 3.67
70 71 3.619233 AAAAATGTCACGGCACAGTAC 57.381 42.857 0.00 0.00 0.00 2.73
93 94 6.306643 TCCTGATGGTGTGTCAAATACATA 57.693 37.500 0.00 0.00 36.05 2.29
190 289 1.067425 CCCAACATCTAACACGGTCGA 60.067 52.381 0.00 0.00 0.00 4.20
228 327 6.183359 GCATGTTCGTCAACTTTGATTTGATC 60.183 38.462 0.00 0.00 39.73 2.92
234 333 3.314913 TGTGCATGTTCGTCAACTTTGAT 59.685 39.130 0.00 0.00 39.73 2.57
240 339 1.063321 TGTGTGTGCATGTTCGTCAAC 59.937 47.619 0.00 0.00 0.00 3.18
276 375 2.526873 AGCCACGTCCCCTGTCTT 60.527 61.111 0.00 0.00 0.00 3.01
277 376 2.997897 GAGCCACGTCCCCTGTCT 60.998 66.667 0.00 0.00 0.00 3.41
314 413 3.409026 AGACTTGTTTAGCTGGTCCTG 57.591 47.619 0.00 0.00 0.00 3.86
361 1187 1.933853 GCGATCAAGGTTGCTCGTAAT 59.066 47.619 15.16 0.00 45.46 1.89
366 1192 2.927553 AATTGCGATCAAGGTTGCTC 57.072 45.000 0.00 0.00 35.37 4.26
406 1232 7.338703 TCTGATAATGTGTCGTAGTAGGTTTCT 59.661 37.037 0.00 0.00 0.00 2.52
407 1233 7.478322 TCTGATAATGTGTCGTAGTAGGTTTC 58.522 38.462 0.00 0.00 0.00 2.78
423 1249 7.425309 CGTTGGTTATTTCGTGTTCTGATAATG 59.575 37.037 0.00 0.00 0.00 1.90
424 1250 7.461107 CGTTGGTTATTTCGTGTTCTGATAAT 58.539 34.615 0.00 0.00 0.00 1.28
425 1251 6.619018 GCGTTGGTTATTTCGTGTTCTGATAA 60.619 38.462 0.00 0.00 0.00 1.75
426 1252 5.163933 GCGTTGGTTATTTCGTGTTCTGATA 60.164 40.000 0.00 0.00 0.00 2.15
427 1253 4.378046 GCGTTGGTTATTTCGTGTTCTGAT 60.378 41.667 0.00 0.00 0.00 2.90
428 1254 3.059461 GCGTTGGTTATTTCGTGTTCTGA 60.059 43.478 0.00 0.00 0.00 3.27
429 1255 3.059188 AGCGTTGGTTATTTCGTGTTCTG 60.059 43.478 0.00 0.00 0.00 3.02
430 1256 3.059188 CAGCGTTGGTTATTTCGTGTTCT 60.059 43.478 0.00 0.00 0.00 3.01
431 1257 3.059461 TCAGCGTTGGTTATTTCGTGTTC 60.059 43.478 0.00 0.00 0.00 3.18
432 1258 2.873472 TCAGCGTTGGTTATTTCGTGTT 59.127 40.909 0.00 0.00 0.00 3.32
433 1259 2.222445 GTCAGCGTTGGTTATTTCGTGT 59.778 45.455 0.00 0.00 0.00 4.49
434 1260 2.478894 AGTCAGCGTTGGTTATTTCGTG 59.521 45.455 0.00 0.00 0.00 4.35
435 1261 2.762745 AGTCAGCGTTGGTTATTTCGT 58.237 42.857 0.00 0.00 0.00 3.85
436 1262 4.914312 TTAGTCAGCGTTGGTTATTTCG 57.086 40.909 0.00 0.00 0.00 3.46
512 1338 3.736483 CCGAATCGGGGATGCAAG 58.264 61.111 14.91 0.00 44.15 4.01
548 1374 4.740235 GCTAGTCCTTGCCTAGCG 57.260 61.111 3.91 0.00 45.55 4.26
551 1377 1.066430 CCAAACGCTAGTCCTTGCCTA 60.066 52.381 0.00 0.00 0.00 3.93
553 1379 0.605589 ACCAAACGCTAGTCCTTGCC 60.606 55.000 0.00 0.00 0.00 4.52
554 1380 1.730612 GTACCAAACGCTAGTCCTTGC 59.269 52.381 0.00 0.00 0.00 4.01
555 1381 2.344025 GGTACCAAACGCTAGTCCTTG 58.656 52.381 7.15 0.00 0.00 3.61
556 1382 1.067354 CGGTACCAAACGCTAGTCCTT 60.067 52.381 13.54 0.00 0.00 3.36
558 1384 3.040409 CGGTACCAAACGCTAGTCC 57.960 57.895 13.54 0.00 0.00 3.85
581 1407 1.697432 GCCCCTAAAAGCCAGGTTTTT 59.303 47.619 17.28 17.28 31.96 1.94
582 1408 1.348064 GCCCCTAAAAGCCAGGTTTT 58.652 50.000 11.80 11.80 34.07 2.43
583 1409 3.067011 GCCCCTAAAAGCCAGGTTT 57.933 52.632 0.00 0.00 0.00 3.27
584 1410 4.865629 GCCCCTAAAAGCCAGGTT 57.134 55.556 0.00 0.00 0.00 3.50
590 1416 1.103987 GCTAGCTGGCCCCTAAAAGC 61.104 60.000 11.66 0.10 35.86 3.51
591 1417 0.466372 GGCTAGCTGGCCCCTAAAAG 60.466 60.000 29.74 0.00 45.92 2.27
592 1418 1.613061 GGCTAGCTGGCCCCTAAAA 59.387 57.895 29.74 0.00 45.92 1.52
593 1419 3.331293 GGCTAGCTGGCCCCTAAA 58.669 61.111 29.74 0.00 45.92 1.85
610 1436 2.226602 GGTTTTCCTAGCCTAGCGAG 57.773 55.000 0.00 0.00 36.94 5.03
622 1448 3.116531 CGACGGGCGAGGTTTTCC 61.117 66.667 0.00 0.00 44.57 3.13
623 1449 3.785499 GCGACGGGCGAGGTTTTC 61.785 66.667 7.81 0.00 44.57 2.29
648 1474 1.226688 TTGAGAGCGAGCCGATTCG 60.227 57.895 0.00 0.00 43.23 3.34
649 1475 1.475441 CGTTGAGAGCGAGCCGATTC 61.475 60.000 0.00 0.00 0.00 2.52
650 1476 1.517257 CGTTGAGAGCGAGCCGATT 60.517 57.895 0.00 0.00 0.00 3.34
651 1477 2.103143 CGTTGAGAGCGAGCCGAT 59.897 61.111 0.00 0.00 0.00 4.18
652 1478 4.116328 CCGTTGAGAGCGAGCCGA 62.116 66.667 0.00 0.00 0.00 5.54
654 1480 4.742201 TGCCGTTGAGAGCGAGCC 62.742 66.667 0.00 0.00 0.00 4.70
655 1481 2.734673 CTTGCCGTTGAGAGCGAGC 61.735 63.158 0.00 0.00 33.88 5.03
656 1482 2.734673 GCTTGCCGTTGAGAGCGAG 61.735 63.158 0.00 0.00 42.45 5.03
657 1483 2.738521 GCTTGCCGTTGAGAGCGA 60.739 61.111 0.00 0.00 0.00 4.93
659 1485 2.734673 CTCGCTTGCCGTTGAGAGC 61.735 63.158 0.00 0.00 38.35 4.09
660 1486 2.734673 GCTCGCTTGCCGTTGAGAG 61.735 63.158 0.00 0.00 38.35 3.20
661 1487 2.738521 GCTCGCTTGCCGTTGAGA 60.739 61.111 0.00 0.00 38.35 3.27
662 1488 2.393768 ATGCTCGCTTGCCGTTGAG 61.394 57.895 0.00 0.00 38.35 3.02
663 1489 2.358615 ATGCTCGCTTGCCGTTGA 60.359 55.556 0.00 0.00 38.35 3.18
664 1490 2.202388 CATGCTCGCTTGCCGTTG 60.202 61.111 0.00 0.00 38.35 4.10
665 1491 4.107051 GCATGCTCGCTTGCCGTT 62.107 61.111 11.37 0.00 40.02 4.44
667 1493 4.824166 GTGCATGCTCGCTTGCCG 62.824 66.667 20.33 0.00 43.62 5.69
668 1494 2.752322 TTTGTGCATGCTCGCTTGCC 62.752 55.000 20.33 15.29 43.62 4.52
669 1495 0.940519 TTTTGTGCATGCTCGCTTGC 60.941 50.000 20.33 19.18 44.24 4.01
670 1496 1.489574 TTTTTGTGCATGCTCGCTTG 58.510 45.000 20.33 0.87 0.00 4.01
671 1497 3.963676 TTTTTGTGCATGCTCGCTT 57.036 42.105 20.33 0.00 0.00 4.68
693 1519 3.343421 GTGCGGGTCAACGTGGAC 61.343 66.667 15.09 15.09 37.06 4.02
694 1520 4.953868 CGTGCGGGTCAACGTGGA 62.954 66.667 0.00 0.00 35.98 4.02
695 1521 3.844858 TACGTGCGGGTCAACGTGG 62.845 63.158 10.79 0.00 39.27 4.94
696 1522 2.354891 TACGTGCGGGTCAACGTG 60.355 61.111 10.79 0.00 39.27 4.49
697 1523 2.355009 GTACGTGCGGGTCAACGT 60.355 61.111 0.00 6.10 41.82 3.99
698 1524 2.354891 TGTACGTGCGGGTCAACG 60.355 61.111 0.00 0.00 0.00 4.10
699 1525 2.651137 CGTGTACGTGCGGGTCAAC 61.651 63.158 0.00 0.00 34.11 3.18
700 1526 2.354891 CGTGTACGTGCGGGTCAA 60.355 61.111 0.00 0.00 34.11 3.18
711 1537 0.940519 TGGCAGTTACGTGCGTGTAC 60.941 55.000 7.55 5.72 45.00 2.90
712 1538 0.665068 CTGGCAGTTACGTGCGTGTA 60.665 55.000 6.28 0.00 45.00 2.90
713 1539 1.954146 CTGGCAGTTACGTGCGTGT 60.954 57.895 6.28 0.00 45.00 4.49
714 1540 2.853210 CTGGCAGTTACGTGCGTG 59.147 61.111 6.28 0.00 45.00 5.34
715 1541 3.041940 GCTGGCAGTTACGTGCGT 61.042 61.111 17.16 2.05 45.00 5.24
716 1542 2.111932 TTTGCTGGCAGTTACGTGCG 62.112 55.000 17.16 0.00 45.00 5.34
717 1543 0.030101 TTTTGCTGGCAGTTACGTGC 59.970 50.000 17.16 0.46 43.19 5.34
718 1544 1.333619 ACTTTTGCTGGCAGTTACGTG 59.666 47.619 17.16 5.31 0.00 4.49
719 1545 1.333619 CACTTTTGCTGGCAGTTACGT 59.666 47.619 17.16 4.70 0.00 3.57
720 1546 1.601903 TCACTTTTGCTGGCAGTTACG 59.398 47.619 17.16 4.06 0.00 3.18
721 1547 3.568538 CATCACTTTTGCTGGCAGTTAC 58.431 45.455 17.16 0.00 0.00 2.50
722 1548 2.030007 GCATCACTTTTGCTGGCAGTTA 60.030 45.455 17.16 2.72 37.14 2.24
723 1549 1.269936 GCATCACTTTTGCTGGCAGTT 60.270 47.619 17.16 0.00 37.14 3.16
724 1550 0.316204 GCATCACTTTTGCTGGCAGT 59.684 50.000 17.16 0.00 37.14 4.40
725 1551 0.315886 TGCATCACTTTTGCTGGCAG 59.684 50.000 10.94 10.94 40.77 4.85
726 1552 0.970640 ATGCATCACTTTTGCTGGCA 59.029 45.000 0.00 0.00 40.77 4.92
727 1553 1.636988 GATGCATCACTTTTGCTGGC 58.363 50.000 21.92 0.00 40.77 4.85
728 1554 1.546923 TGGATGCATCACTTTTGCTGG 59.453 47.619 27.25 0.00 40.77 4.85
729 1555 3.306917 TTGGATGCATCACTTTTGCTG 57.693 42.857 27.25 0.00 40.77 4.41
730 1556 4.250464 CATTTGGATGCATCACTTTTGCT 58.750 39.130 27.25 1.52 40.77 3.91
731 1557 4.593597 CATTTGGATGCATCACTTTTGC 57.406 40.909 27.25 9.25 40.55 3.68
743 1569 3.238903 CGTAAGCTACGCATTTGGATG 57.761 47.619 0.00 0.00 45.81 3.51
754 1580 1.641577 CCAGCCTTGTCGTAAGCTAC 58.358 55.000 0.00 0.00 33.33 3.58
755 1581 0.108329 GCCAGCCTTGTCGTAAGCTA 60.108 55.000 0.00 0.00 33.33 3.32
756 1582 1.376037 GCCAGCCTTGTCGTAAGCT 60.376 57.895 0.00 0.00 35.52 3.74
757 1583 1.234615 TTGCCAGCCTTGTCGTAAGC 61.235 55.000 0.00 0.00 37.18 3.09
758 1584 1.197721 CTTTGCCAGCCTTGTCGTAAG 59.802 52.381 0.00 0.00 0.00 2.34
759 1585 1.234821 CTTTGCCAGCCTTGTCGTAA 58.765 50.000 0.00 0.00 0.00 3.18
760 1586 1.234615 GCTTTGCCAGCCTTGTCGTA 61.235 55.000 0.00 0.00 43.65 3.43
761 1587 2.555547 GCTTTGCCAGCCTTGTCGT 61.556 57.895 0.00 0.00 43.65 4.34
762 1588 2.256461 GCTTTGCCAGCCTTGTCG 59.744 61.111 0.00 0.00 43.65 4.35
769 1595 5.864600 TAGCCTAGCTAAGCTTTGCCAGC 62.865 52.174 25.93 24.01 44.00 4.85
770 1596 1.020437 GCCTAGCTAAGCTTTGCCAG 58.980 55.000 25.93 21.99 40.44 4.85
771 1597 0.620556 AGCCTAGCTAAGCTTTGCCA 59.379 50.000 25.93 14.31 40.44 4.92
772 1598 2.488952 CTAGCCTAGCTAAGCTTTGCC 58.511 52.381 25.93 12.84 40.82 4.52
790 1616 2.369983 TACTTAAGCTAGCCCGGCTA 57.630 50.000 18.39 18.39 40.44 3.93
791 1617 1.718280 ATACTTAAGCTAGCCCGGCT 58.282 50.000 18.05 18.05 43.41 5.52
792 1618 2.674462 GCTATACTTAAGCTAGCCCGGC 60.674 54.545 19.74 0.00 37.01 6.13
793 1619 3.233684 GCTATACTTAAGCTAGCCCGG 57.766 52.381 19.74 0.00 37.01 5.73
797 1623 3.306849 GGGTGGGCTATACTTAAGCTAGC 60.307 52.174 21.25 21.25 39.97 3.42
798 1624 3.901844 TGGGTGGGCTATACTTAAGCTAG 59.098 47.826 1.29 5.43 39.97 3.42
799 1625 3.901844 CTGGGTGGGCTATACTTAAGCTA 59.098 47.826 1.29 0.00 39.97 3.32
800 1626 2.706190 CTGGGTGGGCTATACTTAAGCT 59.294 50.000 1.29 0.00 39.97 3.74
801 1627 2.810767 GCTGGGTGGGCTATACTTAAGC 60.811 54.545 1.29 0.00 39.33 3.09
802 1628 2.438021 TGCTGGGTGGGCTATACTTAAG 59.562 50.000 0.00 0.00 0.00 1.85
803 1629 2.483547 TGCTGGGTGGGCTATACTTAA 58.516 47.619 0.00 0.00 0.00 1.85
804 1630 2.184088 TGCTGGGTGGGCTATACTTA 57.816 50.000 0.00 0.00 0.00 2.24
805 1631 1.295020 TTGCTGGGTGGGCTATACTT 58.705 50.000 0.00 0.00 0.00 2.24
806 1632 1.143684 CATTGCTGGGTGGGCTATACT 59.856 52.381 0.00 0.00 0.00 2.12
807 1633 1.609208 CATTGCTGGGTGGGCTATAC 58.391 55.000 0.00 0.00 0.00 1.47
808 1634 0.178992 GCATTGCTGGGTGGGCTATA 60.179 55.000 0.16 0.00 0.00 1.31
809 1635 1.456331 GCATTGCTGGGTGGGCTAT 60.456 57.895 0.16 0.00 0.00 2.97
810 1636 2.044053 GCATTGCTGGGTGGGCTA 60.044 61.111 0.16 0.00 0.00 3.93
811 1637 3.831727 TTGCATTGCTGGGTGGGCT 62.832 57.895 10.49 0.00 0.00 5.19
812 1638 3.312718 TTGCATTGCTGGGTGGGC 61.313 61.111 10.49 0.00 0.00 5.36
813 1639 2.658422 GTTGCATTGCTGGGTGGG 59.342 61.111 10.49 0.00 0.00 4.61
814 1640 1.756408 TTGGTTGCATTGCTGGGTGG 61.756 55.000 10.49 0.00 0.00 4.61
815 1641 0.106335 TTTGGTTGCATTGCTGGGTG 59.894 50.000 10.49 0.00 0.00 4.61
816 1642 0.106521 GTTTGGTTGCATTGCTGGGT 59.893 50.000 10.49 0.00 0.00 4.51
817 1643 0.945265 CGTTTGGTTGCATTGCTGGG 60.945 55.000 10.49 0.00 0.00 4.45
818 1644 0.249405 ACGTTTGGTTGCATTGCTGG 60.249 50.000 10.49 0.00 0.00 4.85
819 1645 1.569708 AACGTTTGGTTGCATTGCTG 58.430 45.000 10.49 0.00 37.50 4.41
820 1646 3.658757 ATAACGTTTGGTTGCATTGCT 57.341 38.095 5.91 0.00 39.75 3.91
821 1647 4.089351 GTGTATAACGTTTGGTTGCATTGC 59.911 41.667 5.91 0.46 39.75 3.56
822 1648 5.739237 GTGTATAACGTTTGGTTGCATTG 57.261 39.130 5.91 0.00 39.75 2.82
836 1662 5.002464 AGGTGGTGTACATCGTGTATAAC 57.998 43.478 0.00 3.09 35.05 1.89
837 1663 5.664294 AAGGTGGTGTACATCGTGTATAA 57.336 39.130 0.00 0.00 35.05 0.98
890 1721 2.269241 GTACCCTCCTGCAGGTGC 59.731 66.667 31.58 13.73 41.51 5.01
1085 1972 2.345244 CGAGGACCTTGTGCAGCT 59.655 61.111 0.00 0.00 0.00 4.24
1097 3982 3.599285 AAATTGCCGACGCCGAGGA 62.599 57.895 7.48 0.00 38.22 3.71
1159 4048 2.828128 CGTCGGGGTAGTAGCGGAC 61.828 68.421 10.48 10.48 0.00 4.79
1180 4069 0.813610 TCTTTGGTGTCGGCACTGTG 60.814 55.000 21.13 2.76 44.65 3.66
1373 4277 1.068474 CGTCTTCATGAACCGGTCAC 58.932 55.000 8.04 6.13 39.72 3.67
1375 4279 0.245539 TCCGTCTTCATGAACCGGTC 59.754 55.000 28.04 1.72 39.62 4.79
1469 4373 1.611977 CGACGGCAGGTATATCCTTGA 59.388 52.381 0.00 0.00 45.67 3.02
1470 4374 1.935300 GCGACGGCAGGTATATCCTTG 60.935 57.143 0.00 0.00 45.67 3.61
1471 4375 0.317479 GCGACGGCAGGTATATCCTT 59.683 55.000 0.00 0.00 45.67 3.36
1473 4377 1.080025 GGCGACGGCAGGTATATCC 60.080 63.158 17.49 0.00 42.47 2.59
1474 4378 0.246635 ATGGCGACGGCAGGTATATC 59.753 55.000 28.34 0.00 42.43 1.63
1787 4736 1.674962 GCCTCATCATCTCCTTGTTGC 59.325 52.381 0.00 0.00 0.00 4.17
1888 4837 2.358737 GGCCACGACACTCTTGGG 60.359 66.667 0.00 0.00 36.41 4.12
1985 4942 4.783764 TCACGTACACATCATCTGTTCT 57.216 40.909 0.00 0.00 35.29 3.01
1986 4943 4.268644 CCATCACGTACACATCATCTGTTC 59.731 45.833 0.00 0.00 35.29 3.18
1997 4957 1.361668 CTGCCTGCCATCACGTACAC 61.362 60.000 0.00 0.00 0.00 2.90
2021 4981 4.405036 TGCTCTAGTCAAGCAATCAGAGAT 59.595 41.667 2.27 0.00 46.29 2.75
2081 5043 7.039923 AGCAATCAGACTCTTTCATGTTTCATT 60.040 33.333 0.00 0.00 0.00 2.57
2118 5080 3.009301 AGACAGCAGTACACGTTACAC 57.991 47.619 0.00 0.00 0.00 2.90
2119 5081 3.720949 AAGACAGCAGTACACGTTACA 57.279 42.857 0.00 0.00 0.00 2.41
2120 5082 7.982371 ATATAAAGACAGCAGTACACGTTAC 57.018 36.000 0.00 0.00 0.00 2.50
2122 5084 9.894783 CTATATATAAAGACAGCAGTACACGTT 57.105 33.333 0.00 0.00 0.00 3.99
2123 5085 9.064706 ACTATATATAAAGACAGCAGTACACGT 57.935 33.333 0.00 0.00 0.00 4.49
2165 5198 6.142818 TGGCCAAATTAATTAGGTTCATCG 57.857 37.500 0.61 0.00 0.00 3.84
2174 5207 5.951747 ACTCTGAAGCTGGCCAAATTAATTA 59.048 36.000 7.01 0.00 0.00 1.40
2184 5217 2.125350 CGGACTCTGAAGCTGGCC 60.125 66.667 0.00 0.00 0.00 5.36
2206 5239 7.633193 ACTAAATGTTTACAAGTCAACCACA 57.367 32.000 0.00 0.00 0.00 4.17
2236 5269 9.880157 ATCCCTCTAAACAAAATGAAAATGATG 57.120 29.630 0.00 0.00 0.00 3.07
2244 5277 7.831691 TCAACAATCCCTCTAAACAAAATGA 57.168 32.000 0.00 0.00 0.00 2.57
2252 5285 6.436847 TGCAAATGATCAACAATCCCTCTAAA 59.563 34.615 0.00 0.00 33.01 1.85
2253 5286 5.951148 TGCAAATGATCAACAATCCCTCTAA 59.049 36.000 0.00 0.00 33.01 2.10
2355 5389 8.036575 GGACTAAACTTTTAAAACCACCACTTT 58.963 33.333 0.00 0.00 0.00 2.66
2358 5392 6.127394 TGGGACTAAACTTTTAAAACCACCAC 60.127 38.462 0.00 0.00 0.00 4.16
2380 5414 1.609783 CCTCAGCTTTAGGGGTGGG 59.390 63.158 4.19 0.00 35.67 4.61
2389 5423 3.618780 CTCGCAGCCCCTCAGCTTT 62.619 63.158 0.00 0.00 42.61 3.51
2393 5427 2.249413 AATGTCTCGCAGCCCCTCAG 62.249 60.000 0.00 0.00 0.00 3.35
2404 5438 8.888579 AGAACCCACTATATAAAAATGTCTCG 57.111 34.615 0.00 0.00 0.00 4.04
2467 5501 1.904852 AAGCGCGCATGTCTGTCTTG 61.905 55.000 35.10 0.00 0.00 3.02
2474 5508 1.510623 CAAGACAAGCGCGCATGTC 60.511 57.895 44.87 44.87 42.75 3.06
2475 5509 2.175184 GACAAGACAAGCGCGCATGT 62.175 55.000 38.27 38.27 0.00 3.21
2476 5510 1.510623 GACAAGACAAGCGCGCATG 60.511 57.895 35.10 33.53 0.00 4.06
2477 5511 2.680913 GGACAAGACAAGCGCGCAT 61.681 57.895 35.10 20.88 0.00 4.73
2478 5512 3.345808 GGACAAGACAAGCGCGCA 61.346 61.111 35.10 0.00 0.00 6.09
2505 5540 1.523938 GTGAAGGTAGATGCGCCCC 60.524 63.158 4.18 0.00 0.00 5.80
2549 5584 5.563867 GCCAGTAATCACATGTTTTCGGAAA 60.564 40.000 0.00 0.00 0.00 3.13
2558 5593 1.066215 TCTGCGCCAGTAATCACATGT 60.066 47.619 4.18 0.00 32.61 3.21
2559 5594 1.596260 CTCTGCGCCAGTAATCACATG 59.404 52.381 4.18 0.00 32.61 3.21
2560 5595 1.208052 ACTCTGCGCCAGTAATCACAT 59.792 47.619 4.18 0.00 32.61 3.21
2576 5611 4.753662 TACCGGCGCCTCCACTCT 62.754 66.667 26.68 0.65 34.01 3.24
2589 5624 8.358148 AGATTTATCACTGGTGTTATACTACCG 58.642 37.037 0.53 0.00 39.87 4.02
2639 5674 2.365635 ATCCACCCAGCTAGCGGT 60.366 61.111 19.61 14.76 0.00 5.68
2642 5677 0.464554 GGTTCATCCACCCAGCTAGC 60.465 60.000 6.62 6.62 35.97 3.42
2655 5690 9.822185 GAATCTGGCAAAATTAATTAGGTTCAT 57.178 29.630 12.84 0.00 0.00 2.57
2656 5691 8.811017 TGAATCTGGCAAAATTAATTAGGTTCA 58.189 29.630 15.13 15.13 33.02 3.18
2657 5692 9.305925 CTGAATCTGGCAAAATTAATTAGGTTC 57.694 33.333 11.54 11.54 0.00 3.62
2658 5693 9.034800 TCTGAATCTGGCAAAATTAATTAGGTT 57.965 29.630 0.01 0.00 0.00 3.50
2659 5694 8.593945 TCTGAATCTGGCAAAATTAATTAGGT 57.406 30.769 0.01 0.00 0.00 3.08
2660 5695 8.689972 ACTCTGAATCTGGCAAAATTAATTAGG 58.310 33.333 0.01 0.00 0.00 2.69
2661 5696 9.727627 GACTCTGAATCTGGCAAAATTAATTAG 57.272 33.333 0.01 0.00 0.00 1.73
2662 5697 8.686334 GGACTCTGAATCTGGCAAAATTAATTA 58.314 33.333 0.01 0.00 0.00 1.40
2663 5698 7.550712 GGACTCTGAATCTGGCAAAATTAATT 58.449 34.615 0.00 0.00 0.00 1.40
2664 5699 6.183360 CGGACTCTGAATCTGGCAAAATTAAT 60.183 38.462 0.00 0.00 0.00 1.40
2665 5700 5.123820 CGGACTCTGAATCTGGCAAAATTAA 59.876 40.000 0.00 0.00 0.00 1.40
2666 5701 4.635765 CGGACTCTGAATCTGGCAAAATTA 59.364 41.667 0.00 0.00 0.00 1.40
2667 5702 3.441572 CGGACTCTGAATCTGGCAAAATT 59.558 43.478 0.00 0.00 0.00 1.82
2668 5703 3.012518 CGGACTCTGAATCTGGCAAAAT 58.987 45.455 0.00 0.00 0.00 1.82
2669 5704 2.426522 CGGACTCTGAATCTGGCAAAA 58.573 47.619 0.00 0.00 0.00 2.44
2670 5705 1.339055 CCGGACTCTGAATCTGGCAAA 60.339 52.381 0.37 0.00 35.82 3.68
2671 5706 0.250234 CCGGACTCTGAATCTGGCAA 59.750 55.000 0.37 0.00 35.82 4.52
2672 5707 0.614697 TCCGGACTCTGAATCTGGCA 60.615 55.000 9.09 0.00 41.74 4.92
2673 5708 0.755686 ATCCGGACTCTGAATCTGGC 59.244 55.000 6.12 0.00 41.74 4.85
2674 5709 1.342819 GGATCCGGACTCTGAATCTGG 59.657 57.143 6.12 7.66 43.14 3.86
2675 5710 1.000827 CGGATCCGGACTCTGAATCTG 60.001 57.143 26.95 0.00 35.56 2.90
2676 5711 1.323412 CGGATCCGGACTCTGAATCT 58.677 55.000 26.95 0.00 35.56 2.40
2677 5712 1.033574 ACGGATCCGGACTCTGAATC 58.966 55.000 35.87 9.45 44.69 2.52
2678 5713 0.747255 CACGGATCCGGACTCTGAAT 59.253 55.000 35.87 10.74 44.69 2.57
2679 5714 1.320344 CCACGGATCCGGACTCTGAA 61.320 60.000 35.87 0.00 44.69 3.02
2680 5715 1.753078 CCACGGATCCGGACTCTGA 60.753 63.158 35.87 0.00 44.69 3.27
2681 5716 2.005960 GACCACGGATCCGGACTCTG 62.006 65.000 35.87 24.09 44.69 3.35
2682 5717 1.753463 GACCACGGATCCGGACTCT 60.753 63.158 35.87 13.89 44.69 3.24
2683 5718 2.806237 GACCACGGATCCGGACTC 59.194 66.667 35.87 22.16 44.69 3.36
2684 5719 3.138798 CGACCACGGATCCGGACT 61.139 66.667 35.87 18.31 44.69 3.85
2685 5720 3.136123 TCGACCACGGATCCGGAC 61.136 66.667 35.87 21.72 44.69 4.79
2686 5721 3.136123 GTCGACCACGGATCCGGA 61.136 66.667 35.87 21.00 44.69 5.14
2687 5722 2.707849 AAGTCGACCACGGATCCGG 61.708 63.158 35.87 24.12 44.69 5.14
2688 5723 1.516386 CAAGTCGACCACGGATCCG 60.516 63.158 32.20 32.20 46.03 4.18
2689 5724 0.813184 TACAAGTCGACCACGGATCC 59.187 55.000 13.01 0.00 40.21 3.36
2690 5725 2.642139 TTACAAGTCGACCACGGATC 57.358 50.000 13.01 0.00 40.21 3.36
2691 5726 2.036217 TGTTTACAAGTCGACCACGGAT 59.964 45.455 13.01 0.00 40.21 4.18
2692 5727 1.408340 TGTTTACAAGTCGACCACGGA 59.592 47.619 13.01 0.00 40.21 4.69
2693 5728 1.855513 TGTTTACAAGTCGACCACGG 58.144 50.000 13.01 1.72 40.21 4.94
2694 5729 4.461992 AAATGTTTACAAGTCGACCACG 57.538 40.909 13.01 3.24 41.26 4.94
2695 5730 6.535274 ACTAAATGTTTACAAGTCGACCAC 57.465 37.500 13.01 0.49 0.00 4.16
2696 5731 7.556733 AAACTAAATGTTTACAAGTCGACCA 57.443 32.000 13.01 0.92 46.01 4.02
2732 5767 4.725790 ACAATCCCTCTAAGCAAAATGC 57.274 40.909 0.00 0.00 45.46 3.56
2733 5768 6.271488 TCAACAATCCCTCTAAGCAAAATG 57.729 37.500 0.00 0.00 0.00 2.32
2734 5769 7.486407 AATCAACAATCCCTCTAAGCAAAAT 57.514 32.000 0.00 0.00 0.00 1.82
2735 5770 6.916360 AATCAACAATCCCTCTAAGCAAAA 57.084 33.333 0.00 0.00 0.00 2.44
2736 5771 8.593945 AATAATCAACAATCCCTCTAAGCAAA 57.406 30.769 0.00 0.00 0.00 3.68
2737 5772 8.593945 AAATAATCAACAATCCCTCTAAGCAA 57.406 30.769 0.00 0.00 0.00 3.91
2738 5773 7.833682 TGAAATAATCAACAATCCCTCTAAGCA 59.166 33.333 0.00 0.00 34.30 3.91
2739 5774 8.225603 TGAAATAATCAACAATCCCTCTAAGC 57.774 34.615 0.00 0.00 34.30 3.09
2769 5804 8.150296 GCCAAGCCCATTTATTTCTAACAATAT 58.850 33.333 0.00 0.00 0.00 1.28
2770 5805 7.418483 GGCCAAGCCCATTTATTTCTAACAATA 60.418 37.037 0.00 0.00 44.06 1.90
2771 5806 6.348498 GCCAAGCCCATTTATTTCTAACAAT 58.652 36.000 0.00 0.00 0.00 2.71
2772 5807 5.337975 GGCCAAGCCCATTTATTTCTAACAA 60.338 40.000 0.00 0.00 44.06 2.83
2773 5808 4.161377 GGCCAAGCCCATTTATTTCTAACA 59.839 41.667 0.00 0.00 44.06 2.41
2774 5809 4.693283 GGCCAAGCCCATTTATTTCTAAC 58.307 43.478 0.00 0.00 44.06 2.34
2789 5824 4.759183 TCAAAAATTGTTAATGGGCCAAGC 59.241 37.500 11.89 0.00 0.00 4.01
2790 5825 6.874288 TTCAAAAATTGTTAATGGGCCAAG 57.126 33.333 11.89 0.00 0.00 3.61
2791 5826 7.723172 AGATTTCAAAAATTGTTAATGGGCCAA 59.277 29.630 11.89 0.00 0.00 4.52
2792 5827 7.230027 AGATTTCAAAAATTGTTAATGGGCCA 58.770 30.769 9.61 9.61 0.00 5.36
2793 5828 7.390162 TGAGATTTCAAAAATTGTTAATGGGCC 59.610 33.333 0.00 0.00 0.00 5.80
2794 5829 8.321650 TGAGATTTCAAAAATTGTTAATGGGC 57.678 30.769 0.00 0.00 0.00 5.36
2809 5844 5.009911 CACATGGGTCACTTTGAGATTTCAA 59.990 40.000 0.00 0.00 41.44 2.69
2810 5845 4.520111 CACATGGGTCACTTTGAGATTTCA 59.480 41.667 0.00 0.00 0.00 2.69
2811 5846 4.761739 TCACATGGGTCACTTTGAGATTTC 59.238 41.667 0.00 0.00 0.00 2.17
2812 5847 4.728772 TCACATGGGTCACTTTGAGATTT 58.271 39.130 0.00 0.00 0.00 2.17
2813 5848 4.371624 TCACATGGGTCACTTTGAGATT 57.628 40.909 0.00 0.00 0.00 2.40
2814 5849 4.074970 GTTCACATGGGTCACTTTGAGAT 58.925 43.478 0.00 0.00 0.00 2.75
2815 5850 3.118075 TGTTCACATGGGTCACTTTGAGA 60.118 43.478 0.00 0.00 0.00 3.27
2816 5851 3.213506 TGTTCACATGGGTCACTTTGAG 58.786 45.455 0.00 0.00 0.00 3.02
2817 5852 3.289407 TGTTCACATGGGTCACTTTGA 57.711 42.857 0.00 0.00 0.00 2.69
2818 5853 4.589216 ATTGTTCACATGGGTCACTTTG 57.411 40.909 0.00 0.00 0.00 2.77
2819 5854 4.218417 GCTATTGTTCACATGGGTCACTTT 59.782 41.667 0.00 0.00 0.00 2.66
2820 5855 3.758554 GCTATTGTTCACATGGGTCACTT 59.241 43.478 0.00 0.00 0.00 3.16
2821 5856 3.347216 GCTATTGTTCACATGGGTCACT 58.653 45.455 0.00 0.00 0.00 3.41
2822 5857 2.423538 GGCTATTGTTCACATGGGTCAC 59.576 50.000 0.00 0.00 0.00 3.67
2823 5858 2.040947 TGGCTATTGTTCACATGGGTCA 59.959 45.455 0.00 0.00 0.00 4.02
2824 5859 2.684881 CTGGCTATTGTTCACATGGGTC 59.315 50.000 0.00 0.00 0.00 4.46
2825 5860 2.041620 ACTGGCTATTGTTCACATGGGT 59.958 45.455 0.00 0.00 0.00 4.51
2826 5861 2.424601 CACTGGCTATTGTTCACATGGG 59.575 50.000 0.00 0.00 0.00 4.00
2827 5862 2.424601 CCACTGGCTATTGTTCACATGG 59.575 50.000 0.00 0.00 0.00 3.66
2828 5863 3.084039 ACCACTGGCTATTGTTCACATG 58.916 45.455 0.00 0.00 0.00 3.21
2829 5864 3.084039 CACCACTGGCTATTGTTCACAT 58.916 45.455 0.00 0.00 0.00 3.21
2830 5865 2.503331 CACCACTGGCTATTGTTCACA 58.497 47.619 0.00 0.00 0.00 3.58
2831 5866 1.812571 CCACCACTGGCTATTGTTCAC 59.187 52.381 0.00 0.00 0.00 3.18
2832 5867 1.423541 ACCACCACTGGCTATTGTTCA 59.576 47.619 0.00 0.00 42.08 3.18
2833 5868 2.200373 ACCACCACTGGCTATTGTTC 57.800 50.000 0.00 0.00 42.08 3.18
2834 5869 2.108250 AGAACCACCACTGGCTATTGTT 59.892 45.455 0.00 0.00 42.08 2.83
2835 5870 1.705186 AGAACCACCACTGGCTATTGT 59.295 47.619 0.00 0.00 42.08 2.71
2836 5871 2.496899 AGAACCACCACTGGCTATTG 57.503 50.000 0.00 0.00 42.08 1.90
2837 5872 4.650972 TTTAGAACCACCACTGGCTATT 57.349 40.909 0.00 0.00 42.08 1.73
2838 5873 4.018415 ACATTTAGAACCACCACTGGCTAT 60.018 41.667 0.00 0.00 42.08 2.97
2839 5874 3.329520 ACATTTAGAACCACCACTGGCTA 59.670 43.478 0.00 0.00 42.08 3.93
2840 5875 2.108250 ACATTTAGAACCACCACTGGCT 59.892 45.455 0.00 0.00 42.08 4.75
2841 5876 2.514803 ACATTTAGAACCACCACTGGC 58.485 47.619 0.00 0.00 42.08 4.85
2842 5877 5.768164 ACTAAACATTTAGAACCACCACTGG 59.232 40.000 16.46 0.00 42.05 4.00
2843 5878 6.072673 GGACTAAACATTTAGAACCACCACTG 60.073 42.308 16.46 0.00 42.05 3.66
2844 5879 6.002082 GGACTAAACATTTAGAACCACCACT 58.998 40.000 16.46 0.00 42.05 4.00
2845 5880 5.182570 GGGACTAAACATTTAGAACCACCAC 59.817 44.000 16.46 5.19 42.05 4.16
2846 5881 5.163077 TGGGACTAAACATTTAGAACCACCA 60.163 40.000 16.46 12.78 42.05 4.17
2847 5882 5.318630 TGGGACTAAACATTTAGAACCACC 58.681 41.667 16.46 10.95 42.05 4.61
2849 5884 5.766174 GTGTGGGACTAAACATTTAGAACCA 59.234 40.000 16.46 17.87 42.05 3.67
2850 5885 5.182570 GGTGTGGGACTAAACATTTAGAACC 59.817 44.000 16.46 16.04 42.05 3.62
2851 5886 6.002082 AGGTGTGGGACTAAACATTTAGAAC 58.998 40.000 16.46 10.18 42.05 3.01
2852 5887 6.195600 AGGTGTGGGACTAAACATTTAGAA 57.804 37.500 16.46 0.00 42.05 2.10
2853 5888 5.280317 GGAGGTGTGGGACTAAACATTTAGA 60.280 44.000 16.46 0.00 42.05 2.10
2854 5889 4.941873 GGAGGTGTGGGACTAAACATTTAG 59.058 45.833 9.39 9.39 44.37 1.85
2855 5890 4.351407 TGGAGGTGTGGGACTAAACATTTA 59.649 41.667 0.00 0.00 0.00 1.40
2856 5891 3.139397 TGGAGGTGTGGGACTAAACATTT 59.861 43.478 0.00 0.00 0.00 2.32
2857 5892 2.714250 TGGAGGTGTGGGACTAAACATT 59.286 45.455 0.00 0.00 0.00 2.71
2858 5893 2.344592 TGGAGGTGTGGGACTAAACAT 58.655 47.619 0.00 0.00 0.00 2.71
2859 5894 1.809133 TGGAGGTGTGGGACTAAACA 58.191 50.000 0.00 0.00 0.00 2.83
2860 5895 2.943036 TTGGAGGTGTGGGACTAAAC 57.057 50.000 0.00 0.00 0.00 2.01
2861 5896 2.781174 ACTTTGGAGGTGTGGGACTAAA 59.219 45.455 0.00 0.00 0.00 1.85
2862 5897 2.414612 ACTTTGGAGGTGTGGGACTAA 58.585 47.619 0.00 0.00 0.00 2.24
2863 5898 2.112279 ACTTTGGAGGTGTGGGACTA 57.888 50.000 0.00 0.00 0.00 2.59
2864 5899 1.222567 AACTTTGGAGGTGTGGGACT 58.777 50.000 0.00 0.00 0.00 3.85
2865 5900 2.067365 AAACTTTGGAGGTGTGGGAC 57.933 50.000 0.00 0.00 0.00 4.46
2866 5901 2.781174 AGTAAACTTTGGAGGTGTGGGA 59.219 45.455 0.00 0.00 0.00 4.37
2867 5902 2.884639 CAGTAAACTTTGGAGGTGTGGG 59.115 50.000 0.00 0.00 0.00 4.61
2868 5903 3.315191 CACAGTAAACTTTGGAGGTGTGG 59.685 47.826 0.00 0.00 32.26 4.17
2869 5904 4.196193 TCACAGTAAACTTTGGAGGTGTG 58.804 43.478 0.00 0.00 36.27 3.82
2870 5905 4.163458 TCTCACAGTAAACTTTGGAGGTGT 59.837 41.667 0.00 0.00 0.00 4.16
2871 5906 4.511826 GTCTCACAGTAAACTTTGGAGGTG 59.488 45.833 0.00 0.00 0.00 4.00
2872 5907 4.409247 AGTCTCACAGTAAACTTTGGAGGT 59.591 41.667 0.00 0.00 0.00 3.85
2873 5908 4.962155 AGTCTCACAGTAAACTTTGGAGG 58.038 43.478 0.00 0.00 0.00 4.30
2874 5909 6.927294 AAAGTCTCACAGTAAACTTTGGAG 57.073 37.500 6.41 0.00 39.72 3.86
2875 5910 7.696992 AAAAAGTCTCACAGTAAACTTTGGA 57.303 32.000 7.53 0.00 40.16 3.53
2898 5933 8.627403 CGTGGTTGAGAGAACCTACTATATAAA 58.373 37.037 5.25 0.00 40.88 1.40
2899 5934 7.255381 GCGTGGTTGAGAGAACCTACTATATAA 60.255 40.741 5.25 0.00 40.88 0.98
2900 5935 6.206243 GCGTGGTTGAGAGAACCTACTATATA 59.794 42.308 5.25 0.00 40.88 0.86
2901 5936 5.009811 GCGTGGTTGAGAGAACCTACTATAT 59.990 44.000 5.25 0.00 40.88 0.86
2902 5937 4.337555 GCGTGGTTGAGAGAACCTACTATA 59.662 45.833 5.25 0.00 40.88 1.31
2903 5938 3.130693 GCGTGGTTGAGAGAACCTACTAT 59.869 47.826 5.25 0.00 40.88 2.12
2904 5939 2.490903 GCGTGGTTGAGAGAACCTACTA 59.509 50.000 5.25 0.00 40.88 1.82
2905 5940 1.272769 GCGTGGTTGAGAGAACCTACT 59.727 52.381 5.25 0.00 40.88 2.57
2906 5941 1.272769 AGCGTGGTTGAGAGAACCTAC 59.727 52.381 5.25 1.84 40.88 3.18
2907 5942 1.629043 AGCGTGGTTGAGAGAACCTA 58.371 50.000 5.25 0.00 40.88 3.08
2908 5943 1.629043 TAGCGTGGTTGAGAGAACCT 58.371 50.000 5.25 0.00 40.88 3.50
2909 5944 2.288886 ACTTAGCGTGGTTGAGAGAACC 60.289 50.000 0.00 0.00 40.67 3.62
2910 5945 2.731976 CACTTAGCGTGGTTGAGAGAAC 59.268 50.000 0.00 0.00 40.02 3.01
2911 5946 2.626266 TCACTTAGCGTGGTTGAGAGAA 59.374 45.455 0.00 0.00 43.94 2.87
2912 5947 2.235891 TCACTTAGCGTGGTTGAGAGA 58.764 47.619 0.00 0.00 43.94 3.10
2913 5948 2.724977 TCACTTAGCGTGGTTGAGAG 57.275 50.000 0.00 0.00 43.94 3.20
2914 5949 4.159693 ACATATCACTTAGCGTGGTTGAGA 59.840 41.667 0.00 0.00 43.94 3.27
2915 5950 4.433615 ACATATCACTTAGCGTGGTTGAG 58.566 43.478 0.00 0.00 43.94 3.02
2916 5951 4.465632 ACATATCACTTAGCGTGGTTGA 57.534 40.909 0.00 0.00 43.94 3.18
2917 5952 4.629634 TCAACATATCACTTAGCGTGGTTG 59.370 41.667 0.00 0.00 43.94 3.77
2918 5953 4.827692 TCAACATATCACTTAGCGTGGTT 58.172 39.130 0.00 0.00 43.94 3.67
2919 5954 4.465632 TCAACATATCACTTAGCGTGGT 57.534 40.909 0.00 0.00 43.94 4.16
2920 5955 5.049828 TCATCAACATATCACTTAGCGTGG 58.950 41.667 0.00 0.00 43.94 4.94
2921 5956 5.979517 TCTCATCAACATATCACTTAGCGTG 59.020 40.000 0.00 0.00 45.18 5.34
2922 5957 6.039829 TCTCTCATCAACATATCACTTAGCGT 59.960 38.462 0.00 0.00 0.00 5.07
2923 5958 6.442112 TCTCTCATCAACATATCACTTAGCG 58.558 40.000 0.00 0.00 0.00 4.26
2924 5959 8.654230 TTTCTCTCATCAACATATCACTTAGC 57.346 34.615 0.00 0.00 0.00 3.09
2932 5967 9.995003 GGTCTTCTATTTCTCTCATCAACATAT 57.005 33.333 0.00 0.00 0.00 1.78
2933 5968 8.981659 TGGTCTTCTATTTCTCTCATCAACATA 58.018 33.333 0.00 0.00 0.00 2.29
2934 5969 7.768120 GTGGTCTTCTATTTCTCTCATCAACAT 59.232 37.037 0.00 0.00 0.00 2.71
2935 5970 7.099764 GTGGTCTTCTATTTCTCTCATCAACA 58.900 38.462 0.00 0.00 0.00 3.33
2936 5971 7.064016 GTGTGGTCTTCTATTTCTCTCATCAAC 59.936 40.741 0.00 0.00 0.00 3.18
2937 5972 7.099764 GTGTGGTCTTCTATTTCTCTCATCAA 58.900 38.462 0.00 0.00 0.00 2.57
2938 5973 6.625960 CGTGTGGTCTTCTATTTCTCTCATCA 60.626 42.308 0.00 0.00 0.00 3.07
2939 5974 5.746245 CGTGTGGTCTTCTATTTCTCTCATC 59.254 44.000 0.00 0.00 0.00 2.92
2940 5975 5.655488 CGTGTGGTCTTCTATTTCTCTCAT 58.345 41.667 0.00 0.00 0.00 2.90
2941 5976 4.618460 GCGTGTGGTCTTCTATTTCTCTCA 60.618 45.833 0.00 0.00 0.00 3.27
2942 5977 3.860536 GCGTGTGGTCTTCTATTTCTCTC 59.139 47.826 0.00 0.00 0.00 3.20
2943 5978 3.673594 CGCGTGTGGTCTTCTATTTCTCT 60.674 47.826 0.00 0.00 0.00 3.10
2944 5979 2.599082 CGCGTGTGGTCTTCTATTTCTC 59.401 50.000 0.00 0.00 0.00 2.87
2945 5980 2.607187 CGCGTGTGGTCTTCTATTTCT 58.393 47.619 0.00 0.00 0.00 2.52
2946 5981 1.060698 GCGCGTGTGGTCTTCTATTTC 59.939 52.381 8.43 0.00 0.00 2.17
2947 5982 1.076332 GCGCGTGTGGTCTTCTATTT 58.924 50.000 8.43 0.00 0.00 1.40
2948 5983 1.076533 CGCGCGTGTGGTCTTCTATT 61.077 55.000 24.19 0.00 0.00 1.73
2949 5984 1.516386 CGCGCGTGTGGTCTTCTAT 60.516 57.895 24.19 0.00 0.00 1.98
2950 5985 2.126618 CGCGCGTGTGGTCTTCTA 60.127 61.111 24.19 0.00 0.00 2.10
2966 6001 3.250323 CTGGACATGACGAGCGCG 61.250 66.667 8.75 8.75 44.79 6.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.