Multiple sequence alignment - TraesCS2B01G571900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G571900 chr2B 100.000 2588 0 0 1 2588 762029721 762027134 0.000000e+00 4780.0
1 TraesCS2B01G571900 chr2B 93.572 669 18 6 1922 2588 753011671 753011026 0.000000e+00 974.0
2 TraesCS2B01G571900 chr2B 92.831 544 33 6 1 542 109868240 109868779 0.000000e+00 784.0
3 TraesCS2B01G571900 chr2B 78.084 835 138 29 937 1756 545762301 545763105 1.080000e-133 486.0
4 TraesCS2B01G571900 chr2B 82.581 465 78 3 1116 1580 546180012 546180473 8.620000e-110 407.0
5 TraesCS2B01G571900 chr2D 93.208 1384 53 16 535 1911 621118756 621117407 0.000000e+00 1997.0
6 TraesCS2B01G571900 chr2D 85.539 816 97 14 940 1752 621115106 621114309 0.000000e+00 833.0
7 TraesCS2B01G571900 chr2D 88.121 463 45 9 1 457 603785701 603786159 2.270000e-150 542.0
8 TraesCS2B01G571900 chr2D 76.957 894 154 41 944 1823 467065265 467066120 1.810000e-126 462.0
9 TraesCS2B01G571900 chr2D 80.761 473 76 10 1116 1584 467239346 467239807 3.170000e-94 355.0
10 TraesCS2B01G571900 chr2D 79.730 444 81 6 1119 1559 467114948 467115385 1.930000e-81 313.0
11 TraesCS2B01G571900 chr2A 91.840 1152 59 13 765 1909 752917996 752916873 0.000000e+00 1574.0
12 TraesCS2B01G571900 chr2A 81.789 626 96 13 940 1558 607915203 607915817 2.300000e-140 508.0
13 TraesCS2B01G571900 chr2A 81.982 444 74 5 1116 1558 607967727 607968165 3.150000e-99 372.0
14 TraesCS2B01G571900 chr2A 92.050 239 12 6 535 772 752918313 752918081 1.920000e-86 329.0
15 TraesCS2B01G571900 chr2A 82.262 389 55 9 1365 1752 752914814 752914439 8.930000e-85 324.0
16 TraesCS2B01G571900 chr2A 81.073 354 42 14 940 1272 752915169 752914820 2.550000e-65 259.0
17 TraesCS2B01G571900 chr2A 83.333 72 8 3 940 1008 607967534 607967604 2.150000e-06 63.9
18 TraesCS2B01G571900 chr5A 94.887 665 12 1 1924 2588 32715049 32715691 0.000000e+00 1020.0
19 TraesCS2B01G571900 chr5A 91.892 481 31 7 1 475 402655662 402656140 0.000000e+00 665.0
20 TraesCS2B01G571900 chr5A 83.438 477 41 11 1 453 661082814 661082352 2.400000e-110 409.0
21 TraesCS2B01G571900 chr4A 94.635 671 14 1 1918 2588 382431481 382432129 0.000000e+00 1020.0
22 TraesCS2B01G571900 chr4A 94.286 665 15 2 1924 2588 550412533 550413174 0.000000e+00 996.0
23 TraesCS2B01G571900 chr4A 90.678 118 11 0 421 538 152833922 152834039 9.590000e-35 158.0
24 TraesCS2B01G571900 chr7B 94.745 666 13 5 1923 2588 729446477 729447120 0.000000e+00 1016.0
25 TraesCS2B01G571900 chr3B 94.354 673 16 1 1916 2588 828645383 828646033 0.000000e+00 1013.0
26 TraesCS2B01G571900 chr3B 94.595 666 14 1 1923 2588 197770026 197769383 0.000000e+00 1011.0
27 TraesCS2B01G571900 chr3B 93.985 665 16 5 1925 2588 170761749 170762390 0.000000e+00 985.0
28 TraesCS2B01G571900 chr3B 93.835 665 19 1 1924 2588 423540605 423541247 0.000000e+00 981.0
29 TraesCS2B01G571900 chr3B 93.563 668 19 6 1922 2588 741225678 741226322 0.000000e+00 974.0
30 TraesCS2B01G571900 chr7A 94.286 665 15 2 1925 2588 12307630 12308272 0.000000e+00 996.0
31 TraesCS2B01G571900 chr7A 92.407 540 28 4 1 538 625510476 625509948 0.000000e+00 758.0
32 TraesCS2B01G571900 chrUn 93.544 666 18 6 1924 2588 434244769 434245410 0.000000e+00 968.0
33 TraesCS2B01G571900 chrUn 93.544 666 18 6 1924 2588 445486959 445487600 0.000000e+00 968.0
34 TraesCS2B01G571900 chrUn 91.042 480 31 11 1 475 171087768 171088240 2.810000e-179 638.0
35 TraesCS2B01G571900 chrUn 91.004 478 30 12 4 475 138509675 138509205 1.310000e-177 632.0
36 TraesCS2B01G571900 chr5B 93.393 666 20 2 1924 2588 313960000 313960642 0.000000e+00 965.0
37 TraesCS2B01G571900 chr1A 92.227 476 31 5 1 471 44404282 44404756 0.000000e+00 669.0
38 TraesCS2B01G571900 chr3A 91.966 473 31 6 4 471 699294637 699294167 0.000000e+00 656.0
39 TraesCS2B01G571900 chr6A 88.483 547 51 10 1 544 104736560 104737097 0.000000e+00 651.0
40 TraesCS2B01G571900 chr6A 88.793 116 8 3 428 543 98896472 98896362 1.250000e-28 137.0
41 TraesCS2B01G571900 chr5D 82.114 246 14 4 318 533 45243942 45244187 1.580000e-42 183.0
42 TraesCS2B01G571900 chr6D 88.034 117 8 3 431 542 54836121 54836006 1.620000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G571900 chr2B 762027134 762029721 2587 True 4780.00 4780 100.00000 1 2588 1 chr2B.!!$R2 2587
1 TraesCS2B01G571900 chr2B 753011026 753011671 645 True 974.00 974 93.57200 1922 2588 1 chr2B.!!$R1 666
2 TraesCS2B01G571900 chr2B 109868240 109868779 539 False 784.00 784 92.83100 1 542 1 chr2B.!!$F1 541
3 TraesCS2B01G571900 chr2B 545762301 545763105 804 False 486.00 486 78.08400 937 1756 1 chr2B.!!$F2 819
4 TraesCS2B01G571900 chr2D 621114309 621118756 4447 True 1415.00 1997 89.37350 535 1911 2 chr2D.!!$R1 1376
5 TraesCS2B01G571900 chr2D 467065265 467066120 855 False 462.00 462 76.95700 944 1823 1 chr2D.!!$F1 879
6 TraesCS2B01G571900 chr2A 752914439 752918313 3874 True 621.50 1574 86.80625 535 1909 4 chr2A.!!$R1 1374
7 TraesCS2B01G571900 chr2A 607915203 607915817 614 False 508.00 508 81.78900 940 1558 1 chr2A.!!$F1 618
8 TraesCS2B01G571900 chr2A 607967534 607968165 631 False 217.95 372 82.65750 940 1558 2 chr2A.!!$F2 618
9 TraesCS2B01G571900 chr5A 32715049 32715691 642 False 1020.00 1020 94.88700 1924 2588 1 chr5A.!!$F1 664
10 TraesCS2B01G571900 chr4A 382431481 382432129 648 False 1020.00 1020 94.63500 1918 2588 1 chr4A.!!$F2 670
11 TraesCS2B01G571900 chr4A 550412533 550413174 641 False 996.00 996 94.28600 1924 2588 1 chr4A.!!$F3 664
12 TraesCS2B01G571900 chr7B 729446477 729447120 643 False 1016.00 1016 94.74500 1923 2588 1 chr7B.!!$F1 665
13 TraesCS2B01G571900 chr3B 828645383 828646033 650 False 1013.00 1013 94.35400 1916 2588 1 chr3B.!!$F4 672
14 TraesCS2B01G571900 chr3B 197769383 197770026 643 True 1011.00 1011 94.59500 1923 2588 1 chr3B.!!$R1 665
15 TraesCS2B01G571900 chr3B 170761749 170762390 641 False 985.00 985 93.98500 1925 2588 1 chr3B.!!$F1 663
16 TraesCS2B01G571900 chr3B 423540605 423541247 642 False 981.00 981 93.83500 1924 2588 1 chr3B.!!$F2 664
17 TraesCS2B01G571900 chr3B 741225678 741226322 644 False 974.00 974 93.56300 1922 2588 1 chr3B.!!$F3 666
18 TraesCS2B01G571900 chr7A 12307630 12308272 642 False 996.00 996 94.28600 1925 2588 1 chr7A.!!$F1 663
19 TraesCS2B01G571900 chr7A 625509948 625510476 528 True 758.00 758 92.40700 1 538 1 chr7A.!!$R1 537
20 TraesCS2B01G571900 chrUn 434244769 434245410 641 False 968.00 968 93.54400 1924 2588 1 chrUn.!!$F2 664
21 TraesCS2B01G571900 chrUn 445486959 445487600 641 False 968.00 968 93.54400 1924 2588 1 chrUn.!!$F3 664
22 TraesCS2B01G571900 chr5B 313960000 313960642 642 False 965.00 965 93.39300 1924 2588 1 chr5B.!!$F1 664
23 TraesCS2B01G571900 chr6A 104736560 104737097 537 False 651.00 651 88.48300 1 544 1 chr6A.!!$F1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 198 0.036732 TGCCTGGTGATTTCTTCGCT 59.963 50.0 0.0 0.0 35.11 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2059 2244 0.099082 GTTCGCGAGAGGAAGACGAT 59.901 55.0 9.59 0.0 43.69 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.225603 TGAGAGAAGTTTGCTTATTCTGTTTT 57.774 30.769 0.00 0.00 33.53 2.43
40 41 7.945134 AGTTTGCTTATTCTGTTTTCATGAGT 58.055 30.769 0.00 0.00 0.00 3.41
76 77 0.776810 TTTGCACAGATTGGGAGGGA 59.223 50.000 0.00 0.00 0.00 4.20
78 79 0.842030 TGCACAGATTGGGAGGGAGT 60.842 55.000 0.00 0.00 0.00 3.85
79 80 0.393537 GCACAGATTGGGAGGGAGTG 60.394 60.000 0.00 0.00 0.00 3.51
80 81 0.254178 CACAGATTGGGAGGGAGTGG 59.746 60.000 0.00 0.00 0.00 4.00
81 82 0.916358 ACAGATTGGGAGGGAGTGGG 60.916 60.000 0.00 0.00 0.00 4.61
82 83 1.308216 AGATTGGGAGGGAGTGGGG 60.308 63.158 0.00 0.00 0.00 4.96
83 84 1.619669 GATTGGGAGGGAGTGGGGT 60.620 63.158 0.00 0.00 0.00 4.95
84 85 1.926426 GATTGGGAGGGAGTGGGGTG 61.926 65.000 0.00 0.00 0.00 4.61
85 86 4.675303 TGGGAGGGAGTGGGGTGG 62.675 72.222 0.00 0.00 0.00 4.61
88 89 4.348495 GAGGGAGTGGGGTGGGGA 62.348 72.222 0.00 0.00 0.00 4.81
186 198 0.036732 TGCCTGGTGATTTCTTCGCT 59.963 50.000 0.00 0.00 35.11 4.93
195 207 4.202223 GGTGATTTCTTCGCTGTATCCCTA 60.202 45.833 0.00 0.00 35.11 3.53
214 227 1.087771 AGTAATTTCCGCCGCTTCCG 61.088 55.000 0.00 0.00 0.00 4.30
311 325 4.966274 AGGGGCGTGTGGGTGGTA 62.966 66.667 0.00 0.00 0.00 3.25
351 365 1.125711 ACTTGCGTGGGAGGTAAGGT 61.126 55.000 0.00 0.00 31.50 3.50
353 367 2.436115 GCGTGGGAGGTAAGGTGC 60.436 66.667 0.00 0.00 0.00 5.01
368 382 1.826487 GTGCGTGGGGGAAAGTTGT 60.826 57.895 0.00 0.00 0.00 3.32
375 389 2.061848 TGGGGGAAAGTTGTGATCTGA 58.938 47.619 0.00 0.00 0.00 3.27
483 501 2.420568 GGCGGGTGATCGACAGGTA 61.421 63.158 0.00 0.00 38.21 3.08
484 502 1.740285 GCGGGTGATCGACAGGTAT 59.260 57.895 0.00 0.00 0.00 2.73
485 503 0.597637 GCGGGTGATCGACAGGTATG 60.598 60.000 0.00 0.00 0.00 2.39
486 504 1.029681 CGGGTGATCGACAGGTATGA 58.970 55.000 0.00 0.00 0.00 2.15
487 505 1.613925 CGGGTGATCGACAGGTATGAT 59.386 52.381 0.00 0.00 0.00 2.45
488 506 2.817844 CGGGTGATCGACAGGTATGATA 59.182 50.000 0.00 0.00 0.00 2.15
489 507 3.254903 CGGGTGATCGACAGGTATGATAA 59.745 47.826 0.00 0.00 0.00 1.75
490 508 4.616143 CGGGTGATCGACAGGTATGATAAG 60.616 50.000 0.00 0.00 0.00 1.73
491 509 4.322049 GGGTGATCGACAGGTATGATAAGG 60.322 50.000 0.00 0.00 0.00 2.69
492 510 4.281182 GGTGATCGACAGGTATGATAAGGT 59.719 45.833 0.00 0.00 0.00 3.50
493 511 5.475909 GGTGATCGACAGGTATGATAAGGTA 59.524 44.000 0.00 0.00 0.00 3.08
494 512 6.380190 GTGATCGACAGGTATGATAAGGTAC 58.620 44.000 0.00 0.00 0.00 3.34
509 527 2.474112 AGGTACTTTTCCTATCGGGCA 58.526 47.619 0.00 0.00 27.25 5.36
510 528 2.169978 AGGTACTTTTCCTATCGGGCAC 59.830 50.000 0.00 0.00 27.25 5.01
511 529 2.199236 GTACTTTTCCTATCGGGCACG 58.801 52.381 0.00 0.00 42.74 5.34
512 530 0.743345 ACTTTTCCTATCGGGCACGC 60.743 55.000 1.67 0.00 40.69 5.34
513 531 0.462047 CTTTTCCTATCGGGCACGCT 60.462 55.000 1.67 0.00 40.69 5.07
514 532 0.742990 TTTTCCTATCGGGCACGCTG 60.743 55.000 1.67 0.00 40.69 5.18
515 533 1.895020 TTTCCTATCGGGCACGCTGT 61.895 55.000 1.67 0.00 40.69 4.40
516 534 1.895020 TTCCTATCGGGCACGCTGTT 61.895 55.000 1.67 0.00 40.69 3.16
517 535 2.173669 CCTATCGGGCACGCTGTTG 61.174 63.158 1.67 0.00 40.69 3.33
518 536 2.813179 CTATCGGGCACGCTGTTGC 61.813 63.158 1.67 0.00 42.18 4.17
525 543 3.719699 GCACGCTGTTGCCAAATAT 57.280 47.368 0.00 0.00 36.42 1.28
526 544 1.548986 GCACGCTGTTGCCAAATATC 58.451 50.000 0.00 0.00 36.42 1.63
527 545 1.135431 GCACGCTGTTGCCAAATATCA 60.135 47.619 0.00 0.00 36.42 2.15
528 546 2.480073 GCACGCTGTTGCCAAATATCAT 60.480 45.455 0.00 0.00 36.42 2.45
529 547 3.772932 CACGCTGTTGCCAAATATCATT 58.227 40.909 0.00 0.00 35.36 2.57
530 548 3.548668 CACGCTGTTGCCAAATATCATTG 59.451 43.478 0.00 0.00 35.36 2.82
531 549 3.193267 ACGCTGTTGCCAAATATCATTGT 59.807 39.130 0.00 0.00 35.36 2.71
532 550 3.792956 CGCTGTTGCCAAATATCATTGTC 59.207 43.478 0.00 0.00 35.36 3.18
533 551 4.114794 GCTGTTGCCAAATATCATTGTCC 58.885 43.478 0.00 0.00 0.00 4.02
602 620 4.759782 AGTACAGATTGGAGCATGTACAC 58.240 43.478 14.62 0.00 46.64 2.90
615 633 3.676172 GCATGTACACGTAAACTGCAGTA 59.324 43.478 22.01 1.56 0.00 2.74
763 782 2.132089 TTTGGCCCGTGACCCCTAAG 62.132 60.000 0.00 0.00 0.00 2.18
890 1005 1.202557 TCCGTAACGCAGAACAAAGGT 60.203 47.619 0.00 0.00 0.00 3.50
896 1011 1.860078 GCAGAACAAAGGTCGTCCG 59.140 57.895 0.00 0.00 39.05 4.79
916 1031 5.067544 GTCCGCTCCAATACTATATAGTCCC 59.932 48.000 18.68 1.15 37.73 4.46
917 1032 4.341520 CCGCTCCAATACTATATAGTCCCC 59.658 50.000 18.68 2.07 37.73 4.81
918 1033 4.954202 CGCTCCAATACTATATAGTCCCCA 59.046 45.833 18.68 2.09 37.73 4.96
919 1034 5.421056 CGCTCCAATACTATATAGTCCCCAA 59.579 44.000 18.68 1.71 37.73 4.12
920 1035 6.627508 CGCTCCAATACTATATAGTCCCCAAC 60.628 46.154 18.68 4.51 37.73 3.77
921 1036 6.440965 GCTCCAATACTATATAGTCCCCAACT 59.559 42.308 18.68 0.00 42.33 3.16
922 1037 7.038231 GCTCCAATACTATATAGTCCCCAACTT 60.038 40.741 18.68 1.10 39.55 2.66
923 1038 8.808240 TCCAATACTATATAGTCCCCAACTTT 57.192 34.615 18.68 0.04 39.55 2.66
924 1039 9.232882 TCCAATACTATATAGTCCCCAACTTTT 57.767 33.333 18.68 0.00 39.55 2.27
925 1040 9.862149 CCAATACTATATAGTCCCCAACTTTTT 57.138 33.333 18.68 0.00 39.55 1.94
1054 1171 4.570772 AGTTTTGCATGATCGTAATAGCGT 59.429 37.500 0.00 0.00 0.00 5.07
1090 1225 5.276820 GCAGGTTTTGTGTATTTTCTTGTGC 60.277 40.000 0.00 0.00 0.00 4.57
1247 1391 0.036306 ACCCACAACCAGATCGTTCC 59.964 55.000 0.00 0.00 0.00 3.62
1407 1554 4.020617 CTGCCCCACTTCCTGCGA 62.021 66.667 0.00 0.00 0.00 5.10
1580 1736 2.661537 CACGACTGTCAGCGGCAA 60.662 61.111 17.11 0.00 0.00 4.52
1699 1871 9.765795 AGTCAAAAGGTACATATGTCTTATAGC 57.234 33.333 12.68 4.08 0.00 2.97
1721 1893 7.624360 AGCGGTATCTGAATTTTGTATTTCA 57.376 32.000 0.00 0.00 0.00 2.69
1744 1916 8.472007 TCAAACCCAAGAACTGTGTTTTATAT 57.528 30.769 0.00 0.00 0.00 0.86
1823 1995 8.655935 ATCCAAACTTTATTCTTCCAGTCAAT 57.344 30.769 0.00 0.00 0.00 2.57
1983 2168 3.400054 GGTCCAGCCCTAGCCGTT 61.400 66.667 0.00 0.00 41.25 4.44
2155 2780 0.684479 CTCCTCGTCCCTGATCACCA 60.684 60.000 0.00 0.00 0.00 4.17
2311 3002 4.477975 CGACGACCGGAGCTCACC 62.478 72.222 17.19 0.00 33.91 4.02
2478 5211 0.165295 GCTTCAACCGGCTACGAAAC 59.835 55.000 0.00 0.00 44.60 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 5.715439 ATTACCATCCTTCCAACTCATGA 57.285 39.130 0.00 0.00 0.00 3.07
40 41 5.070981 TGTGCAAAAATTACCATCCTTCCAA 59.929 36.000 0.00 0.00 0.00 3.53
78 79 3.224327 TTACCCCATCCCCACCCCA 62.224 63.158 0.00 0.00 0.00 4.96
79 80 2.287349 TTACCCCATCCCCACCCC 60.287 66.667 0.00 0.00 0.00 4.95
80 81 1.621514 ACTTACCCCATCCCCACCC 60.622 63.158 0.00 0.00 0.00 4.61
81 82 0.623617 AGACTTACCCCATCCCCACC 60.624 60.000 0.00 0.00 0.00 4.61
82 83 1.296002 AAGACTTACCCCATCCCCAC 58.704 55.000 0.00 0.00 0.00 4.61
83 84 1.638589 CAAAGACTTACCCCATCCCCA 59.361 52.381 0.00 0.00 0.00 4.96
84 85 1.639108 ACAAAGACTTACCCCATCCCC 59.361 52.381 0.00 0.00 0.00 4.81
85 86 4.790718 ATACAAAGACTTACCCCATCCC 57.209 45.455 0.00 0.00 0.00 3.85
86 87 6.262496 GCTTAATACAAAGACTTACCCCATCC 59.738 42.308 0.00 0.00 0.00 3.51
87 88 6.826741 TGCTTAATACAAAGACTTACCCCATC 59.173 38.462 0.00 0.00 0.00 3.51
88 89 6.727394 TGCTTAATACAAAGACTTACCCCAT 58.273 36.000 0.00 0.00 0.00 4.00
186 198 3.006110 CGGCGGAAATTACTAGGGATACA 59.994 47.826 0.00 0.00 39.74 2.29
195 207 1.087771 CGGAAGCGGCGGAAATTACT 61.088 55.000 9.78 0.00 0.00 2.24
214 227 3.603532 TCAAACCAGAGCAGATCATCAC 58.396 45.455 0.00 0.00 0.00 3.06
311 325 0.555369 TACCCTCTCTCACCCTCCCT 60.555 60.000 0.00 0.00 0.00 4.20
351 365 1.826054 CACAACTTTCCCCCACGCA 60.826 57.895 0.00 0.00 0.00 5.24
353 367 1.165270 GATCACAACTTTCCCCCACG 58.835 55.000 0.00 0.00 0.00 4.94
368 382 1.792367 CACGACGCACTTTTCAGATCA 59.208 47.619 0.00 0.00 0.00 2.92
375 389 2.593436 CCCCCACGACGCACTTTT 60.593 61.111 0.00 0.00 0.00 2.27
393 409 1.405933 GGCCCAACAGAAAATGCCATC 60.406 52.381 0.00 0.00 38.73 3.51
500 518 2.813179 GCAACAGCGTGCCCGATAG 61.813 63.158 0.00 0.00 38.66 2.08
501 519 2.817834 GCAACAGCGTGCCCGATA 60.818 61.111 0.00 0.00 38.66 2.92
514 532 8.891671 AAATATGGACAATGATATTTGGCAAC 57.108 30.769 0.00 0.00 36.27 4.17
515 533 9.902684 AAAAATATGGACAATGATATTTGGCAA 57.097 25.926 0.00 0.00 36.27 4.52
551 569 7.281774 ACATGCATTGACTTCTTTCCATAGTAG 59.718 37.037 0.00 0.00 0.00 2.57
627 645 5.916661 ATACGTAGAGACCACAAATGTCT 57.083 39.130 0.08 0.00 45.47 3.41
723 742 7.850501 CCAAATTTGGTCGGAAAATAATATGC 58.149 34.615 26.34 0.00 43.43 3.14
890 1005 5.494724 ACTATATAGTATTGGAGCGGACGA 58.505 41.667 13.88 0.00 34.13 4.20
896 1011 6.440965 AGTTGGGGACTATATAGTATTGGAGC 59.559 42.308 15.42 1.54 36.65 4.70
922 1037 2.578786 GGGACTCCCTTTGTCGAAAAA 58.421 47.619 6.90 0.00 41.34 1.94
923 1038 2.265589 GGGACTCCCTTTGTCGAAAA 57.734 50.000 6.90 0.00 41.34 2.29
935 1050 0.910338 GGGAAGTAGTTGGGGACTCC 59.090 60.000 0.00 0.00 39.86 3.85
936 1051 1.652947 TGGGAAGTAGTTGGGGACTC 58.347 55.000 0.00 0.00 39.86 3.36
937 1052 2.107726 GTTTGGGAAGTAGTTGGGGACT 59.892 50.000 0.00 0.00 42.55 3.85
938 1053 2.158579 TGTTTGGGAAGTAGTTGGGGAC 60.159 50.000 0.00 0.00 0.00 4.46
1035 1152 4.684242 CCTAACGCTATTACGATCATGCAA 59.316 41.667 0.00 0.00 36.70 4.08
1054 1171 3.181434 ACAAAACCTGCCATGAGACCTAA 60.181 43.478 0.00 0.00 0.00 2.69
1090 1225 2.281208 TGGCCTCGTGTTTTCCCG 60.281 61.111 3.32 0.00 0.00 5.14
1247 1391 3.403057 CGCCACCGACACACTTCG 61.403 66.667 0.00 0.00 38.80 3.79
1272 1416 2.492388 GTATGACACGATCGCGGAC 58.508 57.895 16.60 8.88 43.17 4.79
1332 1479 1.102154 CCACCTTTGTTGTCTGCACA 58.898 50.000 0.00 0.00 0.00 4.57
1643 1815 0.904649 ATTCACATCGAGGCTCCACA 59.095 50.000 9.32 0.00 0.00 4.17
1823 1995 7.609146 ACTCCGTATCTACCACGATAAATCATA 59.391 37.037 0.00 0.00 41.91 2.15
1833 2005 3.606384 CGATCAACTCCGTATCTACCACG 60.606 52.174 0.00 0.00 39.10 4.94
1887 2062 8.519799 AGATTCCAAAACTCAAAAAGTAGTCA 57.480 30.769 0.00 0.00 37.17 3.41
2059 2244 0.099082 GTTCGCGAGAGGAAGACGAT 59.901 55.000 9.59 0.00 43.69 3.73
2294 2985 4.477975 GGTGAGCTCCGGTCGTCG 62.478 72.222 12.15 0.00 38.88 5.12
2295 2986 4.477975 CGGTGAGCTCCGGTCGTC 62.478 72.222 12.15 0.00 45.88 4.20
2478 5211 4.495422 AGTCGTATACTGGTTGAAGCTTG 58.505 43.478 2.10 0.00 36.93 4.01
2527 5396 1.864029 GCTTTTTCTGTCACCGGTTGC 60.864 52.381 2.97 0.15 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.