Multiple sequence alignment - TraesCS2B01G570400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G570400 chr2B 100.000 5698 0 0 1 5698 760936433 760930736 0.000000e+00 10523.0
1 TraesCS2B01G570400 chr2B 84.177 158 11 11 801 945 683765173 683765329 2.140000e-29 141.0
2 TraesCS2B01G570400 chr2A 90.069 2447 154 33 1781 4194 752106101 752103711 0.000000e+00 3090.0
3 TraesCS2B01G570400 chr2A 89.849 926 63 16 4763 5674 752103101 752102193 0.000000e+00 1160.0
4 TraesCS2B01G570400 chr2A 87.461 646 29 12 1090 1689 752106895 752106256 0.000000e+00 697.0
5 TraesCS2B01G570400 chr2A 89.777 538 25 8 4193 4707 752103628 752103098 0.000000e+00 662.0
6 TraesCS2B01G570400 chr2A 98.077 52 1 0 4723 4774 667018413 667018362 2.190000e-14 91.6
7 TraesCS2B01G570400 chr2A 89.706 68 3 3 4704 4770 726750070 726750134 3.660000e-12 84.2
8 TraesCS2B01G570400 chr2A 84.058 69 10 1 919 986 156527505 156527437 1.330000e-06 65.8
9 TraesCS2B01G570400 chr2D 88.926 2384 155 54 1121 3435 620532203 620529860 0.000000e+00 2839.0
10 TraesCS2B01G570400 chr2D 89.592 711 39 10 4986 5683 620528381 620527693 0.000000e+00 870.0
11 TraesCS2B01G570400 chr2D 92.422 607 36 6 3460 4060 620529872 620529270 0.000000e+00 857.0
12 TraesCS2B01G570400 chr2D 90.569 615 27 6 4114 4707 620529250 620528646 0.000000e+00 785.0
13 TraesCS2B01G570400 chr2D 92.453 159 10 2 4763 4920 620528649 620528492 5.740000e-55 226.0
14 TraesCS2B01G570400 chr3A 83.505 679 78 20 294 946 552476465 552477135 2.270000e-168 603.0
15 TraesCS2B01G570400 chr3A 77.823 487 52 26 509 945 580810916 580811396 3.410000e-62 250.0
16 TraesCS2B01G570400 chr7A 81.481 675 104 18 285 945 108233655 108234322 8.400000e-148 534.0
17 TraesCS2B01G570400 chr5A 80.775 697 89 28 285 945 323263676 323264363 2.370000e-138 503.0
18 TraesCS2B01G570400 chr5A 92.958 71 4 1 4694 4764 656215074 656215005 1.010000e-17 102.0
19 TraesCS2B01G570400 chr7B 94.595 296 15 1 1 296 61606560 61606854 1.870000e-124 457.0
20 TraesCS2B01G570400 chr7B 85.906 149 12 8 800 945 439422121 439421979 3.560000e-32 150.0
21 TraesCS2B01G570400 chr7B 82.781 151 19 7 798 945 41520452 41520598 1.670000e-25 128.0
22 TraesCS2B01G570400 chr7B 89.394 66 6 1 4719 4784 251478979 251478915 1.320000e-11 82.4
23 TraesCS2B01G570400 chr7B 100.000 38 0 0 949 986 589350108 589350071 2.850000e-08 71.3
24 TraesCS2B01G570400 chr1B 77.077 698 110 33 285 941 24797594 24798282 1.950000e-94 357.0
25 TraesCS2B01G570400 chr1B 81.538 195 24 11 799 986 145573100 145573289 3.560000e-32 150.0
26 TraesCS2B01G570400 chr4B 83.667 300 39 9 1 298 173712006 173712297 2.020000e-69 274.0
27 TraesCS2B01G570400 chr3B 87.075 147 12 5 800 945 506733653 506733793 5.910000e-35 159.0
28 TraesCS2B01G570400 chr3B 84.146 82 10 3 906 986 293753491 293753412 6.120000e-10 76.8
29 TraesCS2B01G570400 chr6A 82.781 151 18 8 799 945 501165303 501165449 1.670000e-25 128.0
30 TraesCS2B01G570400 chr6D 95.000 60 2 1 4705 4764 28161775 28161717 6.080000e-15 93.5
31 TraesCS2B01G570400 chr6B 91.045 67 5 1 4724 4789 493099210 493099276 7.860000e-14 89.8
32 TraesCS2B01G570400 chr6B 86.301 73 9 1 915 986 35834279 35834207 1.700000e-10 78.7
33 TraesCS2B01G570400 chr1D 96.226 53 2 0 4719 4771 341527527 341527579 2.830000e-13 87.9
34 TraesCS2B01G570400 chr1D 81.609 87 12 4 117 200 362255371 362255456 1.020000e-07 69.4
35 TraesCS2B01G570400 chr5B 91.803 61 2 3 4704 4764 710770161 710770104 1.320000e-11 82.4
36 TraesCS2B01G570400 chr5B 82.558 86 8 7 905 986 697304212 697304294 1.020000e-07 69.4
37 TraesCS2B01G570400 chr3D 89.231 65 4 1 4704 4765 250380544 250380608 1.700000e-10 78.7
38 TraesCS2B01G570400 chr3D 100.000 28 0 0 1 28 108965832 108965859 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G570400 chr2B 760930736 760936433 5697 True 10523.00 10523 100.0000 1 5698 1 chr2B.!!$R1 5697
1 TraesCS2B01G570400 chr2A 752102193 752106895 4702 True 1402.25 3090 89.2890 1090 5674 4 chr2A.!!$R3 4584
2 TraesCS2B01G570400 chr2D 620527693 620532203 4510 True 1115.40 2839 90.7924 1121 5683 5 chr2D.!!$R1 4562
3 TraesCS2B01G570400 chr3A 552476465 552477135 670 False 603.00 603 83.5050 294 946 1 chr3A.!!$F1 652
4 TraesCS2B01G570400 chr7A 108233655 108234322 667 False 534.00 534 81.4810 285 945 1 chr7A.!!$F1 660
5 TraesCS2B01G570400 chr5A 323263676 323264363 687 False 503.00 503 80.7750 285 945 1 chr5A.!!$F1 660
6 TraesCS2B01G570400 chr1B 24797594 24798282 688 False 357.00 357 77.0770 285 941 1 chr1B.!!$F1 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
981 1034 0.031721 GTTATCTCGTAGTGGGCCGG 59.968 60.000 0.0 0.0 0.00 6.13 F
1009 1062 0.035317 TGAAGCCGAGATGCACAACT 59.965 50.000 0.0 0.0 0.00 3.16 F
1654 1759 0.171455 CGACGCCTTCTCTGTAAGCT 59.829 55.000 0.0 0.0 0.00 3.74 F
1750 1891 0.527817 ATCGAATTGCCGACGAGACC 60.528 55.000 0.0 0.0 41.70 3.85 F
1902 2080 1.843851 TCCACTTTGGTGTTCCTCTGT 59.156 47.619 0.0 0.0 41.53 3.41 F
3472 3679 1.549170 TCCGGTGCTTCCTCTTCTTAC 59.451 52.381 0.0 0.0 0.00 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2724 2929 0.171903 CTGCATGTAACTTGGCCAGC 59.828 55.000 5.11 3.59 0.00 4.85 R
3006 3211 4.159557 TGGATGATGCATAGCTACTACCA 58.840 43.478 0.00 0.00 0.00 3.25 R
3440 3647 1.048601 GCACCGGATATCTCCTTGGA 58.951 55.000 9.46 0.00 39.65 3.53 R
3455 3662 1.275573 ACCGTAAGAAGAGGAAGCACC 59.724 52.381 0.00 0.00 43.02 5.01 R
3677 3884 4.864806 ACAAATCTGACTGCATAGTACACG 59.135 41.667 0.00 0.00 37.25 4.49 R
4746 5076 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.934048 TTTTTGAAATTCCTCGGCAAAATT 57.066 29.167 0.00 0.00 37.99 1.82
40 41 6.934048 TTTTGAAATTCCTCGGCAAAATTT 57.066 29.167 0.00 0.00 34.60 1.82
41 42 5.921004 TTGAAATTCCTCGGCAAAATTTG 57.079 34.783 0.57 0.57 33.85 2.32
42 43 5.207110 TGAAATTCCTCGGCAAAATTTGA 57.793 34.783 10.26 0.00 33.85 2.69
43 44 5.605534 TGAAATTCCTCGGCAAAATTTGAA 58.394 33.333 10.26 0.00 33.85 2.69
44 45 6.051717 TGAAATTCCTCGGCAAAATTTGAAA 58.948 32.000 10.26 0.00 33.85 2.69
45 46 6.540189 TGAAATTCCTCGGCAAAATTTGAAAA 59.460 30.769 10.26 0.00 33.85 2.29
46 47 5.922739 ATTCCTCGGCAAAATTTGAAAAC 57.077 34.783 10.26 0.00 0.00 2.43
47 48 4.392921 TCCTCGGCAAAATTTGAAAACA 57.607 36.364 10.26 0.00 0.00 2.83
48 49 4.116238 TCCTCGGCAAAATTTGAAAACAC 58.884 39.130 10.26 0.00 0.00 3.32
49 50 3.060607 CCTCGGCAAAATTTGAAAACACG 60.061 43.478 10.26 3.93 0.00 4.49
50 51 3.770666 TCGGCAAAATTTGAAAACACGA 58.229 36.364 10.26 6.04 0.00 4.35
51 52 4.174009 TCGGCAAAATTTGAAAACACGAA 58.826 34.783 10.26 0.00 0.00 3.85
52 53 4.031878 TCGGCAAAATTTGAAAACACGAAC 59.968 37.500 10.26 0.00 0.00 3.95
53 54 4.201628 CGGCAAAATTTGAAAACACGAACA 60.202 37.500 10.26 0.00 0.00 3.18
54 55 5.501574 CGGCAAAATTTGAAAACACGAACAT 60.502 36.000 10.26 0.00 0.00 2.71
55 56 6.291849 CGGCAAAATTTGAAAACACGAACATA 60.292 34.615 10.26 0.00 0.00 2.29
56 57 7.568497 CGGCAAAATTTGAAAACACGAACATAT 60.568 33.333 10.26 0.00 0.00 1.78
57 58 8.067189 GGCAAAATTTGAAAACACGAACATATT 58.933 29.630 10.26 0.00 0.00 1.28
58 59 9.432077 GCAAAATTTGAAAACACGAACATATTT 57.568 25.926 10.26 0.00 0.00 1.40
69 70 9.913451 AAACACGAACATATTTTGAAAAATGTG 57.087 25.926 18.23 18.23 46.47 3.21
70 71 8.864069 ACACGAACATATTTTGAAAAATGTGA 57.136 26.923 23.65 3.02 44.98 3.58
71 72 9.307121 ACACGAACATATTTTGAAAAATGTGAA 57.693 25.926 23.65 2.73 44.98 3.18
74 75 9.579610 CGAACATATTTTGAAAAATGTGAAACC 57.420 29.630 23.65 12.50 44.98 3.27
81 82 7.969536 TTTGAAAAATGTGAAACCAAGAACA 57.030 28.000 0.00 0.00 34.36 3.18
82 83 8.558973 TTTGAAAAATGTGAAACCAAGAACAT 57.441 26.923 0.00 0.00 34.36 2.71
83 84 8.558973 TTGAAAAATGTGAAACCAAGAACATT 57.441 26.923 0.00 0.00 43.28 2.71
168 169 9.959775 TGAAAACGTGTACATTTTTGAAATTTC 57.040 25.926 18.02 11.41 0.00 2.17
170 171 9.965748 AAAACGTGTACATTTTTGAAATTTCTG 57.034 25.926 18.64 10.64 0.00 3.02
171 172 8.918961 AACGTGTACATTTTTGAAATTTCTGA 57.081 26.923 18.64 5.37 0.00 3.27
172 173 8.918961 ACGTGTACATTTTTGAAATTTCTGAA 57.081 26.923 18.64 10.77 0.00 3.02
173 174 8.803799 ACGTGTACATTTTTGAAATTTCTGAAC 58.196 29.630 18.64 8.75 0.00 3.18
174 175 8.802856 CGTGTACATTTTTGAAATTTCTGAACA 58.197 29.630 18.64 7.71 0.00 3.18
194 195 9.918630 CTGAACAATTTTCAGAAACAGGAATAT 57.081 29.630 18.06 0.00 46.57 1.28
195 196 9.695526 TGAACAATTTTCAGAAACAGGAATATG 57.304 29.630 0.00 0.00 0.00 1.78
196 197 9.696917 GAACAATTTTCAGAAACAGGAATATGT 57.303 29.630 0.00 0.00 33.96 2.29
207 208 5.391312 ACAGGAATATGTTTTCAACTGCC 57.609 39.130 0.00 0.00 0.00 4.85
208 209 4.220602 ACAGGAATATGTTTTCAACTGCCC 59.779 41.667 0.00 0.00 0.00 5.36
209 210 4.220382 CAGGAATATGTTTTCAACTGCCCA 59.780 41.667 0.00 0.00 0.00 5.36
210 211 4.837860 AGGAATATGTTTTCAACTGCCCAA 59.162 37.500 0.00 0.00 0.00 4.12
211 212 5.306678 AGGAATATGTTTTCAACTGCCCAAA 59.693 36.000 0.00 0.00 0.00 3.28
212 213 5.408299 GGAATATGTTTTCAACTGCCCAAAC 59.592 40.000 0.00 0.00 0.00 2.93
213 214 3.902881 ATGTTTTCAACTGCCCAAACA 57.097 38.095 0.00 0.00 41.93 2.83
214 215 3.902881 TGTTTTCAACTGCCCAAACAT 57.097 38.095 0.00 0.00 34.87 2.71
215 216 4.213564 TGTTTTCAACTGCCCAAACATT 57.786 36.364 0.00 0.00 34.87 2.71
216 217 4.583871 TGTTTTCAACTGCCCAAACATTT 58.416 34.783 0.00 0.00 34.87 2.32
217 218 5.006386 TGTTTTCAACTGCCCAAACATTTT 58.994 33.333 0.00 0.00 34.87 1.82
218 219 5.474876 TGTTTTCAACTGCCCAAACATTTTT 59.525 32.000 0.00 0.00 34.87 1.94
265 266 6.405278 AAATTGAACAATTTCGAACCTCCT 57.595 33.333 16.52 0.00 44.98 3.69
266 267 4.829064 TTGAACAATTTCGAACCTCCTG 57.171 40.909 0.00 0.00 34.04 3.86
267 268 4.079980 TGAACAATTTCGAACCTCCTGA 57.920 40.909 0.00 0.00 34.04 3.86
268 269 4.456535 TGAACAATTTCGAACCTCCTGAA 58.543 39.130 0.00 0.00 34.04 3.02
269 270 4.884744 TGAACAATTTCGAACCTCCTGAAA 59.115 37.500 0.00 0.00 36.19 2.69
270 271 5.358442 TGAACAATTTCGAACCTCCTGAAAA 59.642 36.000 0.00 0.00 35.46 2.29
271 272 5.845391 ACAATTTCGAACCTCCTGAAAAA 57.155 34.783 0.00 0.00 35.46 1.94
322 323 6.358974 CCCCCAAAATAGAAAATGTGAAGT 57.641 37.500 0.00 0.00 0.00 3.01
326 327 9.771534 CCCCAAAATAGAAAATGTGAAGTTTTA 57.228 29.630 0.00 0.00 0.00 1.52
455 460 7.834821 ACATGAACAATTTTAAAATTTGCGC 57.165 28.000 20.92 0.00 36.52 6.09
739 774 4.095185 TGTGAACAAAAACCACTAACGAGG 59.905 41.667 0.00 0.00 0.00 4.63
740 775 4.095334 GTGAACAAAAACCACTAACGAGGT 59.905 41.667 0.00 0.00 40.61 3.85
747 782 7.498570 ACAAAAACCACTAACGAGGTACATTTA 59.501 33.333 0.00 0.00 37.07 1.40
750 785 9.723601 AAAACCACTAACGAGGTACATTTATTA 57.276 29.630 0.00 0.00 37.07 0.98
864 901 9.534565 AAAGGAAATAAGAGAAACAGAAAAAGC 57.465 29.630 0.00 0.00 0.00 3.51
866 903 8.355913 AGGAAATAAGAGAAACAGAAAAAGCAG 58.644 33.333 0.00 0.00 0.00 4.24
867 904 7.596621 GGAAATAAGAGAAACAGAAAAAGCAGG 59.403 37.037 0.00 0.00 0.00 4.85
946 999 0.848053 AGAAGGTTCCCAAAACCGGA 59.152 50.000 9.46 0.00 44.82 5.14
947 1000 0.956633 GAAGGTTCCCAAAACCGGAC 59.043 55.000 9.46 0.00 44.82 4.79
948 1001 0.259356 AAGGTTCCCAAAACCGGACA 59.741 50.000 9.46 0.00 44.82 4.02
949 1002 0.466739 AGGTTCCCAAAACCGGACAC 60.467 55.000 9.46 0.00 44.82 3.67
950 1003 0.466739 GGTTCCCAAAACCGGACACT 60.467 55.000 9.46 0.00 0.00 3.55
951 1004 0.666374 GTTCCCAAAACCGGACACTG 59.334 55.000 9.46 0.00 0.00 3.66
952 1005 0.256464 TTCCCAAAACCGGACACTGT 59.744 50.000 9.46 0.00 0.00 3.55
953 1006 1.129917 TCCCAAAACCGGACACTGTA 58.870 50.000 9.46 0.00 0.00 2.74
954 1007 1.071071 TCCCAAAACCGGACACTGTAG 59.929 52.381 9.46 0.00 0.00 2.74
955 1008 0.872388 CCAAAACCGGACACTGTAGC 59.128 55.000 9.46 0.00 0.00 3.58
956 1009 0.511221 CAAAACCGGACACTGTAGCG 59.489 55.000 9.46 0.00 0.00 4.26
957 1010 1.226030 AAAACCGGACACTGTAGCGC 61.226 55.000 9.46 0.00 0.00 5.92
958 1011 3.909258 AACCGGACACTGTAGCGCG 62.909 63.158 9.46 0.00 0.00 6.86
959 1012 4.415332 CCGGACACTGTAGCGCGT 62.415 66.667 8.43 0.00 0.00 6.01
960 1013 2.430244 CGGACACTGTAGCGCGTT 60.430 61.111 8.43 3.54 0.00 4.84
961 1014 1.154169 CGGACACTGTAGCGCGTTA 60.154 57.895 8.43 2.16 0.00 3.18
962 1015 1.132199 CGGACACTGTAGCGCGTTAG 61.132 60.000 8.43 3.83 0.00 2.34
963 1016 0.109412 GGACACTGTAGCGCGTTAGT 60.109 55.000 8.43 4.56 0.00 2.24
964 1017 1.668047 GGACACTGTAGCGCGTTAGTT 60.668 52.381 8.43 0.00 0.00 2.24
965 1018 2.414559 GGACACTGTAGCGCGTTAGTTA 60.415 50.000 8.43 0.00 0.00 2.24
966 1019 3.432782 GACACTGTAGCGCGTTAGTTAT 58.567 45.455 8.43 0.00 0.00 1.89
967 1020 3.432782 ACACTGTAGCGCGTTAGTTATC 58.567 45.455 8.43 0.00 0.00 1.75
968 1021 3.128242 ACACTGTAGCGCGTTAGTTATCT 59.872 43.478 8.43 0.00 0.00 1.98
969 1022 3.724751 CACTGTAGCGCGTTAGTTATCTC 59.275 47.826 8.43 0.00 0.00 2.75
970 1023 2.965414 CTGTAGCGCGTTAGTTATCTCG 59.035 50.000 8.43 0.00 0.00 4.04
971 1024 2.352651 TGTAGCGCGTTAGTTATCTCGT 59.647 45.455 8.43 0.00 0.00 4.18
972 1025 3.555547 TGTAGCGCGTTAGTTATCTCGTA 59.444 43.478 8.43 0.00 0.00 3.43
973 1026 3.250464 AGCGCGTTAGTTATCTCGTAG 57.750 47.619 8.43 0.00 0.00 3.51
974 1027 2.611292 AGCGCGTTAGTTATCTCGTAGT 59.389 45.455 8.43 0.00 0.00 2.73
975 1028 2.712969 GCGCGTTAGTTATCTCGTAGTG 59.287 50.000 8.43 0.00 0.00 2.74
976 1029 3.286576 CGCGTTAGTTATCTCGTAGTGG 58.713 50.000 0.00 0.00 0.00 4.00
977 1030 3.625938 GCGTTAGTTATCTCGTAGTGGG 58.374 50.000 0.00 0.00 0.00 4.61
978 1031 3.625938 CGTTAGTTATCTCGTAGTGGGC 58.374 50.000 0.00 0.00 0.00 5.36
979 1032 3.549625 CGTTAGTTATCTCGTAGTGGGCC 60.550 52.174 0.00 0.00 0.00 5.80
980 1033 1.030457 AGTTATCTCGTAGTGGGCCG 58.970 55.000 0.00 0.00 0.00 6.13
981 1034 0.031721 GTTATCTCGTAGTGGGCCGG 59.968 60.000 0.00 0.00 0.00 6.13
982 1035 1.741327 TTATCTCGTAGTGGGCCGGC 61.741 60.000 21.18 21.18 0.00 6.13
993 1046 2.994417 GGCCGGCCCACATTTGAA 60.994 61.111 36.64 0.00 0.00 2.69
994 1047 2.573340 GCCGGCCCACATTTGAAG 59.427 61.111 18.11 0.00 0.00 3.02
995 1048 2.573340 CCGGCCCACATTTGAAGC 59.427 61.111 0.00 0.00 0.00 3.86
996 1049 2.573340 CGGCCCACATTTGAAGCC 59.427 61.111 0.00 3.49 38.16 4.35
997 1050 2.573340 GGCCCACATTTGAAGCCG 59.427 61.111 0.00 0.00 33.74 5.52
998 1051 1.976474 GGCCCACATTTGAAGCCGA 60.976 57.895 0.00 0.00 33.74 5.54
999 1052 1.508088 GCCCACATTTGAAGCCGAG 59.492 57.895 0.00 0.00 0.00 4.63
1000 1053 0.960364 GCCCACATTTGAAGCCGAGA 60.960 55.000 0.00 0.00 0.00 4.04
1001 1054 1.755179 CCCACATTTGAAGCCGAGAT 58.245 50.000 0.00 0.00 0.00 2.75
1002 1055 1.402968 CCCACATTTGAAGCCGAGATG 59.597 52.381 0.00 0.00 0.00 2.90
1003 1056 1.202222 CCACATTTGAAGCCGAGATGC 60.202 52.381 0.00 0.00 0.00 3.91
1004 1057 1.469703 CACATTTGAAGCCGAGATGCA 59.530 47.619 0.00 0.00 0.00 3.96
1005 1058 1.470098 ACATTTGAAGCCGAGATGCAC 59.530 47.619 0.00 0.00 0.00 4.57
1006 1059 1.469703 CATTTGAAGCCGAGATGCACA 59.530 47.619 0.00 0.00 0.00 4.57
1007 1060 1.603456 TTTGAAGCCGAGATGCACAA 58.397 45.000 0.00 0.00 0.00 3.33
1008 1061 0.874390 TTGAAGCCGAGATGCACAAC 59.126 50.000 0.00 0.00 0.00 3.32
1009 1062 0.035317 TGAAGCCGAGATGCACAACT 59.965 50.000 0.00 0.00 0.00 3.16
1010 1063 1.160137 GAAGCCGAGATGCACAACTT 58.840 50.000 0.00 0.00 0.00 2.66
1011 1064 1.537202 GAAGCCGAGATGCACAACTTT 59.463 47.619 0.00 0.00 0.00 2.66
1012 1065 1.609208 AGCCGAGATGCACAACTTTT 58.391 45.000 0.00 0.00 0.00 2.27
1013 1066 1.956477 AGCCGAGATGCACAACTTTTT 59.044 42.857 0.00 0.00 0.00 1.94
1035 1088 6.773976 TTTGAAGTGTTTCCTGAGATTTGT 57.226 33.333 0.00 0.00 32.09 2.83
1036 1089 6.377327 TTGAAGTGTTTCCTGAGATTTGTC 57.623 37.500 0.00 0.00 32.09 3.18
1037 1090 5.436175 TGAAGTGTTTCCTGAGATTTGTCA 58.564 37.500 0.00 0.00 32.09 3.58
1038 1091 5.296780 TGAAGTGTTTCCTGAGATTTGTCAC 59.703 40.000 0.00 0.00 32.09 3.67
1039 1092 4.137543 AGTGTTTCCTGAGATTTGTCACC 58.862 43.478 0.00 0.00 0.00 4.02
1040 1093 4.137543 GTGTTTCCTGAGATTTGTCACCT 58.862 43.478 0.00 0.00 0.00 4.00
1041 1094 4.214332 GTGTTTCCTGAGATTTGTCACCTC 59.786 45.833 0.00 0.00 0.00 3.85
1042 1095 3.319137 TTCCTGAGATTTGTCACCTCG 57.681 47.619 0.00 0.00 0.00 4.63
1043 1096 2.525368 TCCTGAGATTTGTCACCTCGA 58.475 47.619 0.00 0.00 0.00 4.04
1044 1097 2.493675 TCCTGAGATTTGTCACCTCGAG 59.506 50.000 5.13 5.13 0.00 4.04
1045 1098 2.493675 CCTGAGATTTGTCACCTCGAGA 59.506 50.000 15.71 0.00 0.00 4.04
1046 1099 3.131933 CCTGAGATTTGTCACCTCGAGAT 59.868 47.826 15.71 0.00 0.00 2.75
1047 1100 4.382470 CCTGAGATTTGTCACCTCGAGATT 60.382 45.833 15.71 0.00 0.00 2.40
1048 1101 4.498241 TGAGATTTGTCACCTCGAGATTG 58.502 43.478 15.71 10.82 0.00 2.67
1049 1102 4.220602 TGAGATTTGTCACCTCGAGATTGA 59.779 41.667 15.71 13.14 0.00 2.57
1050 1103 4.753233 AGATTTGTCACCTCGAGATTGAG 58.247 43.478 15.71 0.00 35.70 3.02
1056 1109 2.496341 CTCGAGATTGAGGGCGCA 59.504 61.111 10.83 0.00 32.18 6.09
1057 1110 1.880340 CTCGAGATTGAGGGCGCAC 60.880 63.158 10.83 5.15 32.18 5.34
1058 1111 3.257561 CGAGATTGAGGGCGCACG 61.258 66.667 10.83 0.00 0.00 5.34
1059 1112 2.892425 GAGATTGAGGGCGCACGG 60.892 66.667 10.83 0.00 0.00 4.94
1060 1113 4.473520 AGATTGAGGGCGCACGGG 62.474 66.667 10.83 0.00 0.00 5.28
1061 1114 4.467084 GATTGAGGGCGCACGGGA 62.467 66.667 10.83 0.00 0.00 5.14
1062 1115 3.969250 GATTGAGGGCGCACGGGAA 62.969 63.158 10.83 0.81 0.00 3.97
1070 1123 2.962786 CGCACGGGAACACACGAA 60.963 61.111 0.00 0.00 0.00 3.85
1071 1124 2.526993 CGCACGGGAACACACGAAA 61.527 57.895 0.00 0.00 0.00 3.46
1072 1125 1.010462 GCACGGGAACACACGAAAC 60.010 57.895 0.00 0.00 0.00 2.78
1073 1126 1.644913 CACGGGAACACACGAAACC 59.355 57.895 0.00 0.00 0.00 3.27
1074 1127 1.090625 CACGGGAACACACGAAACCA 61.091 55.000 0.00 0.00 0.00 3.67
1075 1128 0.812412 ACGGGAACACACGAAACCAG 60.812 55.000 0.00 0.00 0.00 4.00
1076 1129 0.531090 CGGGAACACACGAAACCAGA 60.531 55.000 0.00 0.00 0.00 3.86
1077 1130 1.670791 GGGAACACACGAAACCAGAA 58.329 50.000 0.00 0.00 0.00 3.02
1078 1131 2.018515 GGGAACACACGAAACCAGAAA 58.981 47.619 0.00 0.00 0.00 2.52
1079 1132 2.424246 GGGAACACACGAAACCAGAAAA 59.576 45.455 0.00 0.00 0.00 2.29
1080 1133 3.119424 GGGAACACACGAAACCAGAAAAA 60.119 43.478 0.00 0.00 0.00 1.94
1117 1170 0.457166 CGCTCGTTATCGTTCCACCA 60.457 55.000 0.00 0.00 38.33 4.17
1130 1183 4.373116 CACCACGAGACCACCCGG 62.373 72.222 0.00 0.00 38.77 5.73
1413 1481 1.055040 CCCCTTCTCCATCTGCCTAG 58.945 60.000 0.00 0.00 0.00 3.02
1485 1578 1.693083 GCGGTCGGTTATGTGCAGAC 61.693 60.000 0.00 0.00 0.00 3.51
1488 1581 1.076332 GTCGGTTATGTGCAGACACC 58.924 55.000 4.32 4.32 46.86 4.16
1654 1759 0.171455 CGACGCCTTCTCTGTAAGCT 59.829 55.000 0.00 0.00 0.00 3.74
1656 1761 0.533032 ACGCCTTCTCTGTAAGCTCC 59.467 55.000 0.00 0.00 0.00 4.70
1661 1766 2.626840 CTTCTCTGTAAGCTCCCTTGC 58.373 52.381 0.00 0.00 34.67 4.01
1672 1777 1.808133 GCTCCCTTGCTTATCCTGTCG 60.808 57.143 0.00 0.00 0.00 4.35
1674 1779 0.815615 CCCTTGCTTATCCTGTCGCC 60.816 60.000 0.00 0.00 0.00 5.54
1689 1794 2.324330 CGCCGCAATCACCACTTGA 61.324 57.895 0.00 0.00 39.11 3.02
1691 1796 1.875963 CCGCAATCACCACTTGACC 59.124 57.895 0.00 0.00 36.92 4.02
1694 1799 1.453155 GCAATCACCACTTGACCGAT 58.547 50.000 0.00 0.00 36.92 4.18
1695 1800 1.131126 GCAATCACCACTTGACCGATG 59.869 52.381 0.00 0.00 36.92 3.84
1696 1801 2.426522 CAATCACCACTTGACCGATGT 58.573 47.619 0.00 0.00 36.92 3.06
1697 1802 3.595173 CAATCACCACTTGACCGATGTA 58.405 45.455 0.00 0.00 36.92 2.29
1698 1803 3.973206 ATCACCACTTGACCGATGTAA 57.027 42.857 0.00 0.00 36.92 2.41
1699 1804 3.973206 TCACCACTTGACCGATGTAAT 57.027 42.857 0.00 0.00 0.00 1.89
1705 1810 4.406069 CACTTGACCGATGTAATTTGCTG 58.594 43.478 0.00 0.00 0.00 4.41
1706 1811 3.119849 ACTTGACCGATGTAATTTGCTGC 60.120 43.478 0.00 0.00 0.00 5.25
1707 1812 2.431454 TGACCGATGTAATTTGCTGCA 58.569 42.857 0.00 0.00 0.00 4.41
1708 1813 3.016031 TGACCGATGTAATTTGCTGCAT 58.984 40.909 1.84 0.00 0.00 3.96
1731 1871 7.281549 GCATACATCCATATATGCTGACAATCA 59.718 37.037 16.21 0.00 46.69 2.57
1739 1880 7.908601 CCATATATGCTGACAATCATCGAATTG 59.091 37.037 7.24 8.04 41.46 2.32
1749 1890 0.572590 CATCGAATTGCCGACGAGAC 59.427 55.000 0.00 0.00 41.70 3.36
1750 1891 0.527817 ATCGAATTGCCGACGAGACC 60.528 55.000 0.00 0.00 41.70 3.85
1778 1929 5.124457 GTGTTGATTATGACCTCATTGCTGT 59.876 40.000 0.00 0.00 37.76 4.40
1780 1931 6.883756 TGTTGATTATGACCTCATTGCTGTTA 59.116 34.615 0.00 0.00 37.76 2.41
1781 1932 7.392953 TGTTGATTATGACCTCATTGCTGTTAA 59.607 33.333 0.00 0.00 37.76 2.01
1783 1934 7.337938 TGATTATGACCTCATTGCTGTTAAGA 58.662 34.615 0.00 0.00 37.76 2.10
1806 1980 6.414408 AACATCGAGCTTGTTCTAGATTTG 57.586 37.500 0.00 0.00 31.87 2.32
1813 1987 7.915923 TCGAGCTTGTTCTAGATTTGTAGTATG 59.084 37.037 0.00 0.00 0.00 2.39
1816 1990 7.708752 AGCTTGTTCTAGATTTGTAGTATGCTC 59.291 37.037 0.00 0.00 0.00 4.26
1817 1991 7.042389 GCTTGTTCTAGATTTGTAGTATGCTCC 60.042 40.741 0.00 0.00 0.00 4.70
1824 1998 6.583562 AGATTTGTAGTATGCTCCTGGTTAC 58.416 40.000 0.00 0.00 0.00 2.50
1827 2001 5.950544 TGTAGTATGCTCCTGGTTACATT 57.049 39.130 0.00 0.00 0.00 2.71
1828 2002 6.308015 TGTAGTATGCTCCTGGTTACATTT 57.692 37.500 0.00 0.00 0.00 2.32
1829 2003 6.346096 TGTAGTATGCTCCTGGTTACATTTC 58.654 40.000 0.00 0.00 0.00 2.17
1834 2008 4.016444 TGCTCCTGGTTACATTTCCAATC 58.984 43.478 0.00 0.00 33.06 2.67
1835 2009 3.065371 GCTCCTGGTTACATTTCCAATCG 59.935 47.826 0.00 0.00 33.06 3.34
1836 2010 4.513442 CTCCTGGTTACATTTCCAATCGA 58.487 43.478 0.00 0.00 33.06 3.59
1841 2015 7.612244 TCCTGGTTACATTTCCAATCGAAAATA 59.388 33.333 0.00 0.00 43.61 1.40
1842 2016 8.413229 CCTGGTTACATTTCCAATCGAAAATAT 58.587 33.333 0.00 0.00 43.61 1.28
1852 2026 5.717178 TCCAATCGAAAATATTTTGTCCCCA 59.283 36.000 17.98 0.00 0.00 4.96
1863 2037 3.449746 TTTGTCCCCACTATCCCTTTG 57.550 47.619 0.00 0.00 0.00 2.77
1902 2080 1.843851 TCCACTTTGGTGTTCCTCTGT 59.156 47.619 0.00 0.00 41.53 3.41
1903 2081 3.042682 TCCACTTTGGTGTTCCTCTGTA 58.957 45.455 0.00 0.00 41.53 2.74
1904 2082 3.139077 CCACTTTGGTGTTCCTCTGTAC 58.861 50.000 0.00 0.00 41.53 2.90
1985 2163 2.825532 AGTGGCCATGTTTACCATTGTC 59.174 45.455 9.72 0.00 35.53 3.18
1991 2169 4.335416 CCATGTTTACCATTGTCACTCCT 58.665 43.478 0.00 0.00 0.00 3.69
1999 2177 2.502947 CCATTGTCACTCCTCCATCAGA 59.497 50.000 0.00 0.00 0.00 3.27
2005 2183 4.286808 TGTCACTCCTCCATCAGATTTGAA 59.713 41.667 0.00 0.00 36.78 2.69
2008 2186 6.376581 GTCACTCCTCCATCAGATTTGAAAAT 59.623 38.462 0.00 0.00 36.78 1.82
2149 2333 7.491682 AGCTTGTATAGGCCATTTAACATTTG 58.508 34.615 5.01 0.00 0.00 2.32
2151 2335 7.222611 GCTTGTATAGGCCATTTAACATTTGTG 59.777 37.037 5.01 0.00 0.00 3.33
2153 2337 7.542890 TGTATAGGCCATTTAACATTTGTGTG 58.457 34.615 5.01 0.00 0.00 3.82
2156 2342 4.100808 AGGCCATTTAACATTTGTGTGTGT 59.899 37.500 5.01 0.00 31.49 3.72
2246 2432 6.473758 CATGATCATCCAGGAATGACTGTAT 58.526 40.000 4.86 0.00 38.43 2.29
2332 2518 4.445452 AGCGAGTAATCGACAAGGTTAA 57.555 40.909 17.94 0.00 34.64 2.01
2333 2519 4.171754 AGCGAGTAATCGACAAGGTTAAC 58.828 43.478 17.94 0.00 34.64 2.01
2353 2540 7.644157 GGTTAACTTTTGCTCTACTTCAAGTTG 59.356 37.037 5.42 0.00 35.70 3.16
2492 2680 3.665323 GCAGCGAACTAATGAACACTGTG 60.665 47.826 6.19 6.19 0.00 3.66
2530 2725 3.627577 CCAATGGTCCAATACTACTGCAC 59.372 47.826 0.00 0.00 0.00 4.57
2550 2745 3.185188 CACTTCGTCACCTGAATCTGTTG 59.815 47.826 0.00 0.00 0.00 3.33
2566 2761 3.004315 TCTGTTGGTTCTTTTTGATCGGC 59.996 43.478 0.00 0.00 0.00 5.54
2598 2800 5.120399 TGGGCTGACATATTTTAGTTACGG 58.880 41.667 0.00 0.00 0.00 4.02
2604 2806 7.010738 GCTGACATATTTTAGTTACGGCTTACA 59.989 37.037 0.00 0.00 0.00 2.41
2605 2807 8.415192 TGACATATTTTAGTTACGGCTTACAG 57.585 34.615 0.00 0.00 0.00 2.74
2606 2808 8.036575 TGACATATTTTAGTTACGGCTTACAGT 58.963 33.333 0.00 0.00 0.00 3.55
2659 2863 7.297391 CACGTGTTCATCATATTTCAAAGTCA 58.703 34.615 7.58 0.00 0.00 3.41
2673 2877 7.645058 TTTCAAAGTCAGATCTTCAAAAGGT 57.355 32.000 0.00 0.00 0.00 3.50
2723 2928 6.150809 TGTGTTTATTGCTCATATGCAGTGAA 59.849 34.615 0.00 0.00 44.27 3.18
2724 2929 6.690098 GTGTTTATTGCTCATATGCAGTGAAG 59.310 38.462 0.00 0.00 44.27 3.02
2962 3167 7.063308 CCTTTTCATTATAGCGCATGTTTGTTT 59.937 33.333 11.47 0.00 0.00 2.83
2969 3174 2.134346 GCGCATGTTTGTTTTCATGGT 58.866 42.857 0.30 0.00 40.91 3.55
2973 3178 3.184986 GCATGTTTGTTTTCATGGTGAGC 59.815 43.478 7.15 0.00 40.91 4.26
3128 3333 4.631377 TGCCTCGTAAATCTTGTCAATGAG 59.369 41.667 0.00 0.00 0.00 2.90
3258 3465 8.938883 AGGAGTGAAGGTATTTATGATGTATGT 58.061 33.333 0.00 0.00 0.00 2.29
3309 3516 7.086376 CCGATCAGTTGATTTCACTTTGAATT 58.914 34.615 0.00 0.00 36.11 2.17
3310 3517 7.061441 CCGATCAGTTGATTTCACTTTGAATTG 59.939 37.037 0.00 0.00 36.11 2.32
3361 3568 4.083271 GGTGGCTCATTTGTACAAACTCTC 60.083 45.833 22.78 12.28 32.51 3.20
3368 3575 7.119846 GCTCATTTGTACAAACTCTCTAATGGT 59.880 37.037 22.78 0.10 32.51 3.55
3410 3617 4.646492 AGCATTTAAATGACCCTGGACATC 59.354 41.667 28.33 8.69 38.70 3.06
3455 3662 5.717178 TCTTTAGGATCCAAGGAGATATCCG 59.283 44.000 15.82 0.00 42.30 4.18
3472 3679 1.549170 TCCGGTGCTTCCTCTTCTTAC 59.451 52.381 0.00 0.00 0.00 2.34
3578 3785 3.429492 TGCATCTACCATGCCTCAAAAA 58.571 40.909 4.18 0.00 43.94 1.94
3648 3855 7.550196 GGAAAATTAGACGGTGAATAGTACCAA 59.450 37.037 0.00 0.00 38.11 3.67
3677 3884 5.248870 ACTGTCCACAACAAAATTGAGTC 57.751 39.130 0.00 0.00 37.45 3.36
3750 3959 9.674824 ATCGAATTTGATCTTGATATTTTGAGC 57.325 29.630 2.01 0.00 0.00 4.26
3770 3979 5.104569 TGAGCCATGGAAGATGTGTATTGTA 60.105 40.000 18.40 0.00 0.00 2.41
3862 4075 0.178903 ACACCCTAAGAGGAGCACCA 60.179 55.000 2.07 0.00 37.67 4.17
3875 4088 4.210331 AGGAGCACCAAACATATCCATTC 58.790 43.478 2.07 0.00 38.94 2.67
4064 4277 1.334869 GCATACCTGCCACACTATTGC 59.665 52.381 0.00 0.00 42.88 3.56
4065 4278 1.949525 CATACCTGCCACACTATTGCC 59.050 52.381 0.00 0.00 0.00 4.52
4067 4280 0.035056 ACCTGCCACACTATTGCCTC 60.035 55.000 0.00 0.00 0.00 4.70
4068 4281 1.091771 CCTGCCACACTATTGCCTCG 61.092 60.000 0.00 0.00 0.00 4.63
4069 4282 1.078497 TGCCACACTATTGCCTCGG 60.078 57.895 0.00 0.00 0.00 4.63
4070 4283 1.220749 GCCACACTATTGCCTCGGA 59.779 57.895 0.00 0.00 0.00 4.55
4071 4284 0.179045 GCCACACTATTGCCTCGGAT 60.179 55.000 0.00 0.00 0.00 4.18
4072 4285 1.747206 GCCACACTATTGCCTCGGATT 60.747 52.381 0.00 0.00 0.00 3.01
4087 4308 4.244066 CTCGGATTCTATTGCCTCAGATG 58.756 47.826 0.00 0.00 0.00 2.90
4182 4407 2.924290 TGTTGTTTTTGCCGTTTAGTGC 59.076 40.909 0.00 0.00 0.00 4.40
4211 4520 6.180472 ACTCATAGGTTTGGTGATTTAGGTG 58.820 40.000 0.00 0.00 0.00 4.00
4289 4598 6.250344 TCCGAATGTAGTATCCTAACATCG 57.750 41.667 0.00 0.00 0.00 3.84
4302 4611 4.106197 CCTAACATCGTAGAGCTGTTGAC 58.894 47.826 0.00 0.00 43.63 3.18
4430 4739 3.570550 AGACAGTCGATAGCCCAGATAAC 59.429 47.826 0.00 0.00 0.00 1.89
4499 4808 0.473755 CTGGCATGTATACTGGCCCA 59.526 55.000 25.60 15.86 45.83 5.36
4531 4841 3.933861 ATCCCCTAACTTTACCTGCTG 57.066 47.619 0.00 0.00 0.00 4.41
4548 4858 5.426833 ACCTGCTGTATTCCTCTTTATCAGT 59.573 40.000 0.00 0.00 0.00 3.41
4607 4937 1.549170 GGACCGCCTATCATAACCGAT 59.451 52.381 0.00 0.00 0.00 4.18
4667 4997 3.572255 GGCACCAATACAGTTCTTCCAAA 59.428 43.478 0.00 0.00 0.00 3.28
4668 4998 4.220602 GGCACCAATACAGTTCTTCCAAAT 59.779 41.667 0.00 0.00 0.00 2.32
4670 5000 5.863935 GCACCAATACAGTTCTTCCAAATTC 59.136 40.000 0.00 0.00 0.00 2.17
4671 5001 6.389906 CACCAATACAGTTCTTCCAAATTCC 58.610 40.000 0.00 0.00 0.00 3.01
4672 5002 6.015519 CACCAATACAGTTCTTCCAAATTCCA 60.016 38.462 0.00 0.00 0.00 3.53
4673 5003 6.553100 ACCAATACAGTTCTTCCAAATTCCAA 59.447 34.615 0.00 0.00 0.00 3.53
4686 5016 7.447374 TCCAAATTCCAATGTAGTGTTGTAG 57.553 36.000 0.00 0.00 0.00 2.74
4707 5037 5.573337 AGATGTACCGTAACCTGTTACTC 57.427 43.478 15.88 7.41 42.31 2.59
4708 5038 4.400567 AGATGTACCGTAACCTGTTACTCC 59.599 45.833 15.88 4.35 42.31 3.85
4709 5039 2.825532 TGTACCGTAACCTGTTACTCCC 59.174 50.000 15.88 4.61 42.31 4.30
4710 5040 2.315720 ACCGTAACCTGTTACTCCCT 57.684 50.000 15.88 0.00 42.31 4.20
4711 5041 2.174360 ACCGTAACCTGTTACTCCCTC 58.826 52.381 15.88 0.00 42.31 4.30
4712 5042 1.479730 CCGTAACCTGTTACTCCCTCC 59.520 57.143 15.88 0.00 42.31 4.30
4713 5043 1.133790 CGTAACCTGTTACTCCCTCCG 59.866 57.143 15.88 0.48 42.31 4.63
4714 5044 2.174360 GTAACCTGTTACTCCCTCCGT 58.826 52.381 11.90 0.00 41.51 4.69
4715 5045 1.264295 AACCTGTTACTCCCTCCGTC 58.736 55.000 0.00 0.00 0.00 4.79
4716 5046 0.614134 ACCTGTTACTCCCTCCGTCC 60.614 60.000 0.00 0.00 0.00 4.79
4717 5047 1.328430 CCTGTTACTCCCTCCGTCCC 61.328 65.000 0.00 0.00 0.00 4.46
4718 5048 0.613853 CTGTTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
4719 5049 0.178926 TGTTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
4720 5050 0.978907 GTTACTCCCTCCGTCCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
4721 5051 1.066358 GTTACTCCCTCCGTCCCAAAG 60.066 57.143 0.00 0.00 0.00 2.77
4722 5052 1.262640 TACTCCCTCCGTCCCAAAGC 61.263 60.000 0.00 0.00 0.00 3.51
4723 5053 2.203938 TCCCTCCGTCCCAAAGCT 60.204 61.111 0.00 0.00 0.00 3.74
4724 5054 0.976073 CTCCCTCCGTCCCAAAGCTA 60.976 60.000 0.00 0.00 0.00 3.32
4725 5055 0.976073 TCCCTCCGTCCCAAAGCTAG 60.976 60.000 0.00 0.00 0.00 3.42
4726 5056 1.265454 CCCTCCGTCCCAAAGCTAGT 61.265 60.000 0.00 0.00 0.00 2.57
4727 5057 1.481871 CCTCCGTCCCAAAGCTAGTA 58.518 55.000 0.00 0.00 0.00 1.82
4728 5058 1.136500 CCTCCGTCCCAAAGCTAGTAC 59.864 57.143 0.00 0.00 0.00 2.73
4729 5059 1.822990 CTCCGTCCCAAAGCTAGTACA 59.177 52.381 0.00 0.00 0.00 2.90
4730 5060 2.232941 CTCCGTCCCAAAGCTAGTACAA 59.767 50.000 0.00 0.00 0.00 2.41
4731 5061 2.633967 TCCGTCCCAAAGCTAGTACAAA 59.366 45.455 0.00 0.00 0.00 2.83
4732 5062 3.000727 CCGTCCCAAAGCTAGTACAAAG 58.999 50.000 0.00 0.00 0.00 2.77
4733 5063 3.556423 CCGTCCCAAAGCTAGTACAAAGT 60.556 47.826 0.00 0.00 0.00 2.66
4734 5064 4.062991 CGTCCCAAAGCTAGTACAAAGTT 58.937 43.478 0.00 0.00 0.00 2.66
4735 5065 4.084013 CGTCCCAAAGCTAGTACAAAGTTG 60.084 45.833 0.00 0.00 0.00 3.16
4736 5066 5.061179 GTCCCAAAGCTAGTACAAAGTTGA 58.939 41.667 0.00 0.00 0.00 3.18
4737 5067 5.179555 GTCCCAAAGCTAGTACAAAGTTGAG 59.820 44.000 0.00 0.00 0.00 3.02
4738 5068 5.063880 CCCAAAGCTAGTACAAAGTTGAGT 58.936 41.667 0.00 0.00 0.00 3.41
4739 5069 5.179555 CCCAAAGCTAGTACAAAGTTGAGTC 59.820 44.000 0.00 0.00 0.00 3.36
4740 5070 5.758296 CCAAAGCTAGTACAAAGTTGAGTCA 59.242 40.000 0.00 0.00 0.00 3.41
4741 5071 6.428159 CCAAAGCTAGTACAAAGTTGAGTCAT 59.572 38.462 0.00 0.00 0.00 3.06
4742 5072 7.041098 CCAAAGCTAGTACAAAGTTGAGTCATT 60.041 37.037 0.00 0.00 0.00 2.57
4743 5073 8.345565 CAAAGCTAGTACAAAGTTGAGTCATTT 58.654 33.333 0.00 0.00 0.00 2.32
4744 5074 9.555727 AAAGCTAGTACAAAGTTGAGTCATTTA 57.444 29.630 0.00 0.00 0.00 1.40
4745 5075 9.726438 AAGCTAGTACAAAGTTGAGTCATTTAT 57.274 29.630 0.00 0.00 0.00 1.40
4746 5076 9.726438 AGCTAGTACAAAGTTGAGTCATTTATT 57.274 29.630 0.00 0.00 0.00 1.40
4750 5080 9.965824 AGTACAAAGTTGAGTCATTTATTTTGG 57.034 29.630 12.94 0.78 0.00 3.28
4751 5081 9.191995 GTACAAAGTTGAGTCATTTATTTTGGG 57.808 33.333 12.94 0.00 0.00 4.12
4752 5082 8.017418 ACAAAGTTGAGTCATTTATTTTGGGA 57.983 30.769 12.94 0.00 0.00 4.37
4753 5083 7.926018 ACAAAGTTGAGTCATTTATTTTGGGAC 59.074 33.333 12.94 0.00 0.00 4.46
4754 5084 6.254281 AGTTGAGTCATTTATTTTGGGACG 57.746 37.500 0.00 0.00 33.84 4.79
4755 5085 5.183140 AGTTGAGTCATTTATTTTGGGACGG 59.817 40.000 0.00 0.00 33.84 4.79
4756 5086 4.912586 TGAGTCATTTATTTTGGGACGGA 58.087 39.130 0.00 0.00 33.84 4.69
4757 5087 4.941263 TGAGTCATTTATTTTGGGACGGAG 59.059 41.667 0.00 0.00 33.84 4.63
4758 5088 4.270008 AGTCATTTATTTTGGGACGGAGG 58.730 43.478 0.00 0.00 33.84 4.30
4759 5089 3.380320 GTCATTTATTTTGGGACGGAGGG 59.620 47.826 0.00 0.00 0.00 4.30
4760 5090 3.267291 TCATTTATTTTGGGACGGAGGGA 59.733 43.478 0.00 0.00 0.00 4.20
4761 5091 3.359695 TTTATTTTGGGACGGAGGGAG 57.640 47.619 0.00 0.00 0.00 4.30
4762 5092 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
4763 5093 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4764 5094 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
4765 5095 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
4766 5096 0.115745 TTGGGACGGAGGGAGTACTT 59.884 55.000 0.00 0.00 0.00 2.24
4767 5097 0.115745 TGGGACGGAGGGAGTACTTT 59.884 55.000 0.00 0.00 0.00 2.66
4768 5098 1.273759 GGGACGGAGGGAGTACTTTT 58.726 55.000 0.00 0.00 0.00 2.27
4769 5099 1.627329 GGGACGGAGGGAGTACTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
4770 5100 2.833943 GGGACGGAGGGAGTACTTTTTA 59.166 50.000 0.00 0.00 0.00 1.52
4771 5101 3.453717 GGGACGGAGGGAGTACTTTTTAT 59.546 47.826 0.00 0.00 0.00 1.40
4898 5228 1.374505 CTGTTTTTGCGGCCCCATG 60.375 57.895 0.00 0.00 0.00 3.66
4931 5261 2.414612 TGGTCTGGTCTAAGTTTGGGT 58.585 47.619 0.00 0.00 0.00 4.51
4937 5267 4.094476 CTGGTCTAAGTTTGGGTCTAGGA 58.906 47.826 0.00 0.00 0.00 2.94
4993 5368 6.357198 CAAAAATCAGTTGAAAAGGCATTCG 58.643 36.000 0.00 0.00 31.80 3.34
5006 5381 0.304705 GCATTCGGCCACTGTTATCG 59.695 55.000 2.24 0.00 36.11 2.92
5013 5388 2.547826 GGCCACTGTTATCGAAGTACC 58.452 52.381 0.00 0.00 0.00 3.34
5066 5441 1.164411 TCCACCTTGCATTTACGCTG 58.836 50.000 0.00 0.00 0.00 5.18
5067 5442 0.881118 CCACCTTGCATTTACGCTGT 59.119 50.000 0.00 0.00 0.00 4.40
5068 5443 1.269448 CCACCTTGCATTTACGCTGTT 59.731 47.619 0.00 0.00 0.00 3.16
5069 5444 2.584791 CACCTTGCATTTACGCTGTTC 58.415 47.619 0.00 0.00 0.00 3.18
5089 5464 0.576798 GTTCATCATGCGCGATTCGA 59.423 50.000 12.10 0.00 41.67 3.71
5102 5477 2.459934 CGATTCGATGATTCCACGTGA 58.540 47.619 19.30 0.00 0.00 4.35
5115 5490 1.270839 CCACGTGAATCAGGTGTTCCT 60.271 52.381 27.35 0.00 45.19 3.36
5166 5541 1.884235 ACGAAGAAGAAAGGGTGCAG 58.116 50.000 0.00 0.00 0.00 4.41
5186 5561 8.900781 GGTGCAGAGCAATCATTATATCAATAT 58.099 33.333 0.00 0.00 41.47 1.28
5247 5634 4.081420 CAGAGGTTAGATACTTGCCACACT 60.081 45.833 0.00 0.00 0.00 3.55
5258 5645 1.308047 TGCCACACTGCACTAACTTG 58.692 50.000 0.00 0.00 36.04 3.16
5259 5646 0.593128 GCCACACTGCACTAACTTGG 59.407 55.000 0.00 0.00 0.00 3.61
5263 5650 2.942376 CACACTGCACTAACTTGGAACA 59.058 45.455 0.00 0.00 0.00 3.18
5309 5696 4.767255 CGTCAGGGAGGGTGCTGC 62.767 72.222 0.00 0.00 0.00 5.25
5422 5809 3.123620 CAAGCTGCTCCCTCGCAC 61.124 66.667 1.00 0.00 35.74 5.34
5546 5933 4.329545 GCCTGGTCCACTTCGGCA 62.330 66.667 13.68 0.00 40.41 5.69
5582 5969 4.513519 CGAAGCGCCTGATTGGTA 57.486 55.556 2.29 0.00 38.35 3.25
5584 5971 0.861837 CGAAGCGCCTGATTGGTATC 59.138 55.000 2.29 0.00 38.35 2.24
5633 6020 2.336945 TCGCAGCATCTCCATGAAAT 57.663 45.000 0.00 0.00 30.57 2.17
5634 6021 2.216046 TCGCAGCATCTCCATGAAATC 58.784 47.619 0.00 0.00 30.57 2.17
5640 6027 3.380637 AGCATCTCCATGAAATCAAGCAC 59.619 43.478 0.00 0.00 30.57 4.40
5645 6032 6.349243 TCTCCATGAAATCAAGCACAAAAT 57.651 33.333 0.00 0.00 0.00 1.82
5647 6034 7.894708 TCTCCATGAAATCAAGCACAAAATTA 58.105 30.769 0.00 0.00 0.00 1.40
5649 6036 8.309163 TCCATGAAATCAAGCACAAAATTAAC 57.691 30.769 0.00 0.00 0.00 2.01
5650 6037 7.116090 TCCATGAAATCAAGCACAAAATTAACG 59.884 33.333 0.00 0.00 0.00 3.18
5651 6038 7.095691 CCATGAAATCAAGCACAAAATTAACGT 60.096 33.333 0.00 0.00 0.00 3.99
5652 6039 7.388290 TGAAATCAAGCACAAAATTAACGTC 57.612 32.000 0.00 0.00 0.00 4.34
5653 6040 6.975197 TGAAATCAAGCACAAAATTAACGTCA 59.025 30.769 0.00 0.00 0.00 4.35
5655 6042 7.945033 AATCAAGCACAAAATTAACGTCAAT 57.055 28.000 0.00 0.00 0.00 2.57
5656 6043 6.746104 TCAAGCACAAAATTAACGTCAATG 57.254 33.333 0.00 0.00 0.00 2.82
5657 6044 6.499172 TCAAGCACAAAATTAACGTCAATGA 58.501 32.000 0.00 0.00 0.00 2.57
5659 6046 6.312399 AGCACAAAATTAACGTCAATGAGA 57.688 33.333 0.00 0.00 0.00 3.27
5661 6048 7.370383 AGCACAAAATTAACGTCAATGAGAAT 58.630 30.769 0.00 0.00 0.00 2.40
5662 6049 7.538678 AGCACAAAATTAACGTCAATGAGAATC 59.461 33.333 0.00 0.00 0.00 2.52
5663 6050 7.201350 GCACAAAATTAACGTCAATGAGAATCC 60.201 37.037 0.00 0.00 0.00 3.01
5674 6061 3.594603 ATGAGAATCCGTGTTTCGACT 57.405 42.857 0.00 0.00 42.86 4.18
5675 6062 2.672714 TGAGAATCCGTGTTTCGACTG 58.327 47.619 0.00 0.00 42.86 3.51
5679 6066 1.992170 ATCCGTGTTTCGACTGCTAC 58.008 50.000 0.00 0.00 42.86 3.58
5683 6070 1.855978 CGTGTTTCGACTGCTACACAA 59.144 47.619 0.00 0.00 40.59 3.33
5684 6071 2.347292 CGTGTTTCGACTGCTACACAAC 60.347 50.000 0.00 0.92 40.59 3.32
5685 6072 2.605818 GTGTTTCGACTGCTACACAACA 59.394 45.455 0.00 0.68 40.36 3.33
5686 6073 2.605818 TGTTTCGACTGCTACACAACAC 59.394 45.455 0.00 0.00 0.00 3.32
5687 6074 2.588027 TTCGACTGCTACACAACACA 57.412 45.000 0.00 0.00 0.00 3.72
5688 6075 2.812358 TCGACTGCTACACAACACAT 57.188 45.000 0.00 0.00 0.00 3.21
5689 6076 3.926821 TCGACTGCTACACAACACATA 57.073 42.857 0.00 0.00 0.00 2.29
5690 6077 4.450082 TCGACTGCTACACAACACATAT 57.550 40.909 0.00 0.00 0.00 1.78
5691 6078 5.570234 TCGACTGCTACACAACACATATA 57.430 39.130 0.00 0.00 0.00 0.86
5692 6079 5.337554 TCGACTGCTACACAACACATATAC 58.662 41.667 0.00 0.00 0.00 1.47
5693 6080 5.099575 CGACTGCTACACAACACATATACA 58.900 41.667 0.00 0.00 0.00 2.29
5694 6081 5.004440 CGACTGCTACACAACACATATACAC 59.996 44.000 0.00 0.00 0.00 2.90
5695 6082 4.862574 ACTGCTACACAACACATATACACG 59.137 41.667 0.00 0.00 0.00 4.49
5696 6083 4.811908 TGCTACACAACACATATACACGT 58.188 39.130 0.00 0.00 0.00 4.49
5697 6084 5.952033 TGCTACACAACACATATACACGTA 58.048 37.500 0.00 0.00 0.00 3.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 6.934048 AATTTTGCCGAGGAATTTCAAAAA 57.066 29.167 8.07 0.00 39.21 1.94
17 18 6.540189 TCAAATTTTGCCGAGGAATTTCAAAA 59.460 30.769 4.19 6.93 39.80 2.44
18 19 6.051717 TCAAATTTTGCCGAGGAATTTCAAA 58.948 32.000 4.19 0.00 32.35 2.69
19 20 5.605534 TCAAATTTTGCCGAGGAATTTCAA 58.394 33.333 4.19 0.00 32.35 2.69
20 21 5.207110 TCAAATTTTGCCGAGGAATTTCA 57.793 34.783 4.19 0.00 32.35 2.69
21 22 6.538189 TTTCAAATTTTGCCGAGGAATTTC 57.462 33.333 4.19 0.00 32.35 2.17
22 23 6.317391 TGTTTTCAAATTTTGCCGAGGAATTT 59.683 30.769 4.19 0.00 34.33 1.82
23 24 5.819901 TGTTTTCAAATTTTGCCGAGGAATT 59.180 32.000 4.19 0.00 0.00 2.17
24 25 5.236263 GTGTTTTCAAATTTTGCCGAGGAAT 59.764 36.000 4.19 0.00 0.00 3.01
25 26 4.568760 GTGTTTTCAAATTTTGCCGAGGAA 59.431 37.500 4.19 0.00 0.00 3.36
26 27 4.116238 GTGTTTTCAAATTTTGCCGAGGA 58.884 39.130 4.19 0.00 0.00 3.71
27 28 3.060607 CGTGTTTTCAAATTTTGCCGAGG 60.061 43.478 4.19 0.00 0.00 4.63
28 29 3.794028 TCGTGTTTTCAAATTTTGCCGAG 59.206 39.130 4.19 0.00 0.00 4.63
29 30 3.770666 TCGTGTTTTCAAATTTTGCCGA 58.229 36.364 4.19 3.00 0.00 5.54
30 31 4.201628 TGTTCGTGTTTTCAAATTTTGCCG 60.202 37.500 4.19 0.97 0.00 5.69
31 32 5.209944 TGTTCGTGTTTTCAAATTTTGCC 57.790 34.783 4.19 0.00 0.00 4.52
32 33 8.986039 AATATGTTCGTGTTTTCAAATTTTGC 57.014 26.923 4.19 0.00 0.00 3.68
43 44 9.913451 CACATTTTTCAAAATATGTTCGTGTTT 57.087 25.926 8.30 0.00 38.11 2.83
44 45 9.307121 TCACATTTTTCAAAATATGTTCGTGTT 57.693 25.926 8.30 0.00 38.11 3.32
45 46 8.864069 TCACATTTTTCAAAATATGTTCGTGT 57.136 26.923 8.30 0.00 38.11 4.49
48 49 9.579610 GGTTTCACATTTTTCAAAATATGTTCG 57.420 29.630 8.30 1.46 38.11 3.95
55 56 9.007901 TGTTCTTGGTTTCACATTTTTCAAAAT 57.992 25.926 0.00 0.00 39.07 1.82
56 57 8.383318 TGTTCTTGGTTTCACATTTTTCAAAA 57.617 26.923 0.00 0.00 0.00 2.44
57 58 7.969536 TGTTCTTGGTTTCACATTTTTCAAA 57.030 28.000 0.00 0.00 0.00 2.69
58 59 8.558973 AATGTTCTTGGTTTCACATTTTTCAA 57.441 26.923 0.00 0.00 36.64 2.69
59 60 8.558973 AAATGTTCTTGGTTTCACATTTTTCA 57.441 26.923 3.78 0.00 43.93 2.69
142 143 9.959775 GAAATTTCAAAAATGTACACGTTTTCA 57.040 25.926 13.40 2.12 42.37 2.69
144 145 9.965748 CAGAAATTTCAAAAATGTACACGTTTT 57.034 25.926 19.99 11.52 44.33 2.43
145 146 9.360093 TCAGAAATTTCAAAAATGTACACGTTT 57.640 25.926 19.99 0.00 36.70 3.60
146 147 8.918961 TCAGAAATTTCAAAAATGTACACGTT 57.081 26.923 19.99 0.00 0.00 3.99
147 148 8.803799 GTTCAGAAATTTCAAAAATGTACACGT 58.196 29.630 19.99 0.00 0.00 4.49
148 149 8.802856 TGTTCAGAAATTTCAAAAATGTACACG 58.197 29.630 19.99 0.00 0.00 4.49
168 169 9.918630 ATATTCCTGTTTCTGAAAATTGTTCAG 57.081 29.630 9.93 9.93 45.38 3.02
169 170 9.695526 CATATTCCTGTTTCTGAAAATTGTTCA 57.304 29.630 4.09 0.00 0.00 3.18
170 171 9.696917 ACATATTCCTGTTTCTGAAAATTGTTC 57.303 29.630 4.09 0.00 0.00 3.18
235 236 9.715123 GGTTCGAAATTGTTCAATTTCAATTTT 57.285 25.926 31.71 12.18 46.90 1.82
237 238 8.661352 AGGTTCGAAATTGTTCAATTTCAATT 57.339 26.923 31.71 20.39 45.01 2.32
238 239 7.384932 GGAGGTTCGAAATTGTTCAATTTCAAT 59.615 33.333 31.71 20.25 45.01 2.57
239 240 6.699642 GGAGGTTCGAAATTGTTCAATTTCAA 59.300 34.615 31.71 25.11 45.01 2.69
240 241 6.040391 AGGAGGTTCGAAATTGTTCAATTTCA 59.960 34.615 31.71 22.58 45.01 2.69
241 242 6.363357 CAGGAGGTTCGAAATTGTTCAATTTC 59.637 38.462 27.27 27.27 42.67 2.17
242 243 6.040391 TCAGGAGGTTCGAAATTGTTCAATTT 59.960 34.615 19.17 19.17 35.26 1.82
243 244 5.534654 TCAGGAGGTTCGAAATTGTTCAATT 59.465 36.000 0.00 5.12 32.89 2.32
244 245 5.070001 TCAGGAGGTTCGAAATTGTTCAAT 58.930 37.500 0.00 0.00 32.89 2.57
245 246 4.456535 TCAGGAGGTTCGAAATTGTTCAA 58.543 39.130 0.00 0.00 32.89 2.69
246 247 4.079980 TCAGGAGGTTCGAAATTGTTCA 57.920 40.909 0.00 0.00 32.89 3.18
247 248 5.432885 TTTCAGGAGGTTCGAAATTGTTC 57.567 39.130 0.00 0.00 0.00 3.18
248 249 5.845391 TTTTCAGGAGGTTCGAAATTGTT 57.155 34.783 0.00 0.00 0.00 2.83
249 250 5.845391 TTTTTCAGGAGGTTCGAAATTGT 57.155 34.783 0.00 0.00 0.00 2.71
315 316 7.717568 TCGGATTTTCCAAATAAAACTTCACA 58.282 30.769 0.00 0.00 35.91 3.58
377 381 7.936496 ATGTTCCCACTTTTCAAAAATGTTT 57.064 28.000 0.00 0.00 0.00 2.83
841 878 7.596621 CCTGCTTTTTCTGTTTCTCTTATTTCC 59.403 37.037 0.00 0.00 0.00 3.13
846 883 5.690865 TCCCTGCTTTTTCTGTTTCTCTTA 58.309 37.500 0.00 0.00 0.00 2.10
847 884 4.536765 TCCCTGCTTTTTCTGTTTCTCTT 58.463 39.130 0.00 0.00 0.00 2.85
849 886 4.918810 TTCCCTGCTTTTTCTGTTTCTC 57.081 40.909 0.00 0.00 0.00 2.87
891 943 2.166664 CCGGGTTTTCACTGGTTTTTCA 59.833 45.455 0.00 0.00 0.00 2.69
946 999 2.995466 TAACTAACGCGCTACAGTGT 57.005 45.000 5.73 0.00 36.26 3.55
947 1000 3.692576 AGATAACTAACGCGCTACAGTG 58.307 45.455 5.73 0.00 0.00 3.66
948 1001 3.545624 CGAGATAACTAACGCGCTACAGT 60.546 47.826 5.73 0.62 0.00 3.55
949 1002 2.965414 CGAGATAACTAACGCGCTACAG 59.035 50.000 5.73 0.00 0.00 2.74
950 1003 2.352651 ACGAGATAACTAACGCGCTACA 59.647 45.455 5.73 0.00 33.15 2.74
951 1004 2.979299 ACGAGATAACTAACGCGCTAC 58.021 47.619 5.73 0.00 33.15 3.58
952 1005 3.804325 ACTACGAGATAACTAACGCGCTA 59.196 43.478 5.73 0.00 33.15 4.26
953 1006 2.611292 ACTACGAGATAACTAACGCGCT 59.389 45.455 5.73 0.00 33.15 5.92
954 1007 2.712969 CACTACGAGATAACTAACGCGC 59.287 50.000 5.73 0.00 33.15 6.86
955 1008 3.286576 CCACTACGAGATAACTAACGCG 58.713 50.000 3.53 3.53 35.67 6.01
956 1009 3.625938 CCCACTACGAGATAACTAACGC 58.374 50.000 0.00 0.00 0.00 4.84
957 1010 3.549625 GGCCCACTACGAGATAACTAACG 60.550 52.174 0.00 0.00 0.00 3.18
958 1011 3.549625 CGGCCCACTACGAGATAACTAAC 60.550 52.174 0.00 0.00 0.00 2.34
959 1012 2.620115 CGGCCCACTACGAGATAACTAA 59.380 50.000 0.00 0.00 0.00 2.24
960 1013 2.224606 CGGCCCACTACGAGATAACTA 58.775 52.381 0.00 0.00 0.00 2.24
961 1014 1.030457 CGGCCCACTACGAGATAACT 58.970 55.000 0.00 0.00 0.00 2.24
962 1015 0.031721 CCGGCCCACTACGAGATAAC 59.968 60.000 0.00 0.00 0.00 1.89
963 1016 1.741327 GCCGGCCCACTACGAGATAA 61.741 60.000 18.11 0.00 0.00 1.75
964 1017 2.198287 GCCGGCCCACTACGAGATA 61.198 63.158 18.11 0.00 0.00 1.98
965 1018 3.537874 GCCGGCCCACTACGAGAT 61.538 66.667 18.11 0.00 0.00 2.75
976 1029 2.994417 TTCAAATGTGGGCCGGCC 60.994 61.111 38.57 38.57 0.00 6.13
977 1030 2.573340 CTTCAAATGTGGGCCGGC 59.427 61.111 21.18 21.18 0.00 6.13
978 1031 2.573340 GCTTCAAATGTGGGCCGG 59.427 61.111 0.00 0.00 0.00 6.13
979 1032 2.573340 GGCTTCAAATGTGGGCCG 59.427 61.111 0.00 0.00 35.49 6.13
980 1033 1.937546 CTCGGCTTCAAATGTGGGCC 61.938 60.000 0.00 0.00 39.23 5.80
981 1034 0.960364 TCTCGGCTTCAAATGTGGGC 60.960 55.000 0.00 0.00 0.00 5.36
982 1035 1.402968 CATCTCGGCTTCAAATGTGGG 59.597 52.381 0.00 0.00 0.00 4.61
983 1036 1.202222 GCATCTCGGCTTCAAATGTGG 60.202 52.381 0.00 0.00 0.00 4.17
984 1037 1.469703 TGCATCTCGGCTTCAAATGTG 59.530 47.619 0.00 0.00 34.04 3.21
985 1038 1.470098 GTGCATCTCGGCTTCAAATGT 59.530 47.619 0.00 0.00 34.04 2.71
986 1039 1.469703 TGTGCATCTCGGCTTCAAATG 59.530 47.619 0.00 0.00 34.04 2.32
987 1040 1.825090 TGTGCATCTCGGCTTCAAAT 58.175 45.000 0.00 0.00 34.04 2.32
988 1041 1.266718 GTTGTGCATCTCGGCTTCAAA 59.733 47.619 0.00 0.00 33.23 2.69
989 1042 0.874390 GTTGTGCATCTCGGCTTCAA 59.126 50.000 0.00 0.00 34.04 2.69
990 1043 0.035317 AGTTGTGCATCTCGGCTTCA 59.965 50.000 0.00 0.00 34.04 3.02
991 1044 1.160137 AAGTTGTGCATCTCGGCTTC 58.840 50.000 0.00 0.00 34.04 3.86
992 1045 1.609208 AAAGTTGTGCATCTCGGCTT 58.391 45.000 0.00 0.00 34.04 4.35
993 1046 1.609208 AAAAGTTGTGCATCTCGGCT 58.391 45.000 0.00 0.00 34.04 5.52
994 1047 2.422276 AAAAAGTTGTGCATCTCGGC 57.578 45.000 0.00 0.00 0.00 5.54
1010 1063 7.610865 ACAAATCTCAGGAAACACTTCAAAAA 58.389 30.769 0.00 0.00 32.75 1.94
1011 1064 7.093988 TGACAAATCTCAGGAAACACTTCAAAA 60.094 33.333 0.00 0.00 32.75 2.44
1012 1065 6.376864 TGACAAATCTCAGGAAACACTTCAAA 59.623 34.615 0.00 0.00 32.75 2.69
1013 1066 5.885352 TGACAAATCTCAGGAAACACTTCAA 59.115 36.000 0.00 0.00 32.75 2.69
1014 1067 5.296780 GTGACAAATCTCAGGAAACACTTCA 59.703 40.000 0.00 0.00 32.75 3.02
1015 1068 5.278022 GGTGACAAATCTCAGGAAACACTTC 60.278 44.000 0.00 0.00 0.00 3.01
1016 1069 4.580580 GGTGACAAATCTCAGGAAACACTT 59.419 41.667 0.00 0.00 0.00 3.16
1017 1070 4.137543 GGTGACAAATCTCAGGAAACACT 58.862 43.478 0.00 0.00 0.00 3.55
1018 1071 4.137543 AGGTGACAAATCTCAGGAAACAC 58.862 43.478 0.00 0.00 0.00 3.32
1019 1072 4.389374 GAGGTGACAAATCTCAGGAAACA 58.611 43.478 0.00 0.00 0.00 2.83
1020 1073 3.433615 CGAGGTGACAAATCTCAGGAAAC 59.566 47.826 0.00 0.00 0.00 2.78
1021 1074 3.323691 TCGAGGTGACAAATCTCAGGAAA 59.676 43.478 0.00 0.00 0.00 3.13
1022 1075 2.897326 TCGAGGTGACAAATCTCAGGAA 59.103 45.455 0.00 0.00 0.00 3.36
1023 1076 2.493675 CTCGAGGTGACAAATCTCAGGA 59.506 50.000 3.91 0.00 0.00 3.86
1024 1077 2.493675 TCTCGAGGTGACAAATCTCAGG 59.506 50.000 13.56 0.00 0.00 3.86
1025 1078 3.857549 TCTCGAGGTGACAAATCTCAG 57.142 47.619 13.56 0.00 0.00 3.35
1026 1079 4.220602 TCAATCTCGAGGTGACAAATCTCA 59.779 41.667 13.56 0.00 0.00 3.27
1027 1080 4.748892 TCAATCTCGAGGTGACAAATCTC 58.251 43.478 13.56 0.00 0.00 2.75
1028 1081 4.382470 CCTCAATCTCGAGGTGACAAATCT 60.382 45.833 13.56 0.00 46.48 2.40
1029 1082 3.868077 CCTCAATCTCGAGGTGACAAATC 59.132 47.826 13.56 0.00 46.48 2.17
1030 1083 3.866651 CCTCAATCTCGAGGTGACAAAT 58.133 45.455 13.56 0.00 46.48 2.32
1031 1084 3.319137 CCTCAATCTCGAGGTGACAAA 57.681 47.619 13.56 0.00 46.48 2.83
1039 1092 1.880340 GTGCGCCCTCAATCTCGAG 60.880 63.158 5.93 5.93 0.00 4.04
1040 1093 2.184322 GTGCGCCCTCAATCTCGA 59.816 61.111 4.18 0.00 0.00 4.04
1041 1094 3.257561 CGTGCGCCCTCAATCTCG 61.258 66.667 4.18 0.00 0.00 4.04
1042 1095 2.892425 CCGTGCGCCCTCAATCTC 60.892 66.667 4.18 0.00 0.00 2.75
1043 1096 4.473520 CCCGTGCGCCCTCAATCT 62.474 66.667 4.18 0.00 0.00 2.40
1044 1097 3.969250 TTCCCGTGCGCCCTCAATC 62.969 63.158 4.18 0.00 0.00 2.67
1045 1098 4.028490 TTCCCGTGCGCCCTCAAT 62.028 61.111 4.18 0.00 0.00 2.57
1053 1106 2.526993 TTTCGTGTGTTCCCGTGCG 61.527 57.895 0.00 0.00 0.00 5.34
1054 1107 1.010462 GTTTCGTGTGTTCCCGTGC 60.010 57.895 0.00 0.00 0.00 5.34
1055 1108 1.090625 TGGTTTCGTGTGTTCCCGTG 61.091 55.000 0.00 0.00 0.00 4.94
1056 1109 0.812412 CTGGTTTCGTGTGTTCCCGT 60.812 55.000 0.00 0.00 0.00 5.28
1057 1110 0.531090 TCTGGTTTCGTGTGTTCCCG 60.531 55.000 0.00 0.00 0.00 5.14
1058 1111 1.670791 TTCTGGTTTCGTGTGTTCCC 58.329 50.000 0.00 0.00 0.00 3.97
1059 1112 3.768468 TTTTCTGGTTTCGTGTGTTCC 57.232 42.857 0.00 0.00 0.00 3.62
1077 1130 3.687212 CGGTTTTTCTGTTTGGCCTTTTT 59.313 39.130 3.32 0.00 0.00 1.94
1078 1131 3.266636 CGGTTTTTCTGTTTGGCCTTTT 58.733 40.909 3.32 0.00 0.00 2.27
1079 1132 2.899976 CGGTTTTTCTGTTTGGCCTTT 58.100 42.857 3.32 0.00 0.00 3.11
1080 1133 1.472552 GCGGTTTTTCTGTTTGGCCTT 60.473 47.619 3.32 0.00 0.00 4.35
1081 1134 0.104120 GCGGTTTTTCTGTTTGGCCT 59.896 50.000 3.32 0.00 0.00 5.19
1082 1135 0.104120 AGCGGTTTTTCTGTTTGGCC 59.896 50.000 0.00 0.00 0.00 5.36
1083 1136 1.487482 GAGCGGTTTTTCTGTTTGGC 58.513 50.000 0.00 0.00 0.00 4.52
1084 1137 1.064952 ACGAGCGGTTTTTCTGTTTGG 59.935 47.619 0.00 0.00 0.00 3.28
1085 1138 2.468532 ACGAGCGGTTTTTCTGTTTG 57.531 45.000 0.00 0.00 0.00 2.93
1086 1139 4.609783 CGATAACGAGCGGTTTTTCTGTTT 60.610 41.667 1.55 0.00 42.66 2.83
1087 1140 3.120786 CGATAACGAGCGGTTTTTCTGTT 60.121 43.478 1.55 0.00 42.66 3.16
1088 1141 2.410730 CGATAACGAGCGGTTTTTCTGT 59.589 45.455 1.55 0.00 42.66 3.41
1376 1444 0.996762 GGAGGAGGAGGAGGAGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
1377 1445 1.541672 GGAGGAGGAGGAGGAGGAG 59.458 68.421 0.00 0.00 0.00 3.69
1378 1446 2.015726 GGGAGGAGGAGGAGGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
1379 1447 2.612251 GGGAGGAGGAGGAGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
1380 1448 1.598856 AAGGGGAGGAGGAGGAGGAG 61.599 65.000 0.00 0.00 0.00 3.69
1381 1449 1.550374 AAGGGGAGGAGGAGGAGGA 60.550 63.158 0.00 0.00 0.00 3.71
1434 1502 0.955178 GCAGAGACTAGGCGAGCATA 59.045 55.000 5.26 0.00 0.00 3.14
1654 1759 0.178068 GCGACAGGATAAGCAAGGGA 59.822 55.000 0.00 0.00 0.00 4.20
1656 1761 1.154205 CGGCGACAGGATAAGCAAGG 61.154 60.000 0.00 0.00 0.00 3.61
1661 1766 0.861837 GATTGCGGCGACAGGATAAG 59.138 55.000 12.98 0.00 0.00 1.73
1672 1777 1.210155 GTCAAGTGGTGATTGCGGC 59.790 57.895 0.00 0.00 38.90 6.53
1674 1779 0.948623 TCGGTCAAGTGGTGATTGCG 60.949 55.000 0.00 0.00 38.90 4.85
1689 1794 3.944650 TGTATGCAGCAAATTACATCGGT 59.055 39.130 0.00 0.00 0.00 4.69
1691 1796 5.149273 GGATGTATGCAGCAAATTACATCG 58.851 41.667 26.78 0.00 42.56 3.84
1694 1799 7.764141 ATATGGATGTATGCAGCAAATTACA 57.236 32.000 9.30 9.30 31.62 2.41
1695 1800 9.726232 CATATATGGATGTATGCAGCAAATTAC 57.274 33.333 0.00 0.00 31.62 1.89
1706 1811 8.726870 TGATTGTCAGCATATATGGATGTATG 57.273 34.615 14.51 0.00 35.67 2.39
1707 1812 9.557061 GATGATTGTCAGCATATATGGATGTAT 57.443 33.333 14.51 0.67 32.15 2.29
1708 1813 7.707893 CGATGATTGTCAGCATATATGGATGTA 59.292 37.037 14.51 0.00 31.10 2.29
1731 1871 0.527817 GGTCTCGTCGGCAATTCGAT 60.528 55.000 0.00 0.00 41.40 3.59
1749 1890 5.006153 TGAGGTCATAATCAACACTACGG 57.994 43.478 0.00 0.00 0.00 4.02
1750 1891 6.510157 GCAATGAGGTCATAATCAACACTACG 60.510 42.308 0.00 0.00 35.10 3.51
1783 1934 5.934625 ACAAATCTAGAACAAGCTCGATGTT 59.065 36.000 1.89 1.89 43.37 2.71
1806 1980 5.758784 GGAAATGTAACCAGGAGCATACTAC 59.241 44.000 0.00 0.00 0.00 2.73
1813 1987 3.065371 CGATTGGAAATGTAACCAGGAGC 59.935 47.826 0.00 0.00 37.48 4.70
1816 1990 5.637006 TTTCGATTGGAAATGTAACCAGG 57.363 39.130 0.00 0.00 39.67 4.45
1817 1991 9.801873 AATATTTTCGATTGGAAATGTAACCAG 57.198 29.630 9.24 0.00 43.82 4.00
1824 1998 8.603181 GGGACAAAATATTTTCGATTGGAAATG 58.397 33.333 10.53 0.00 43.82 2.32
1827 2001 6.211584 TGGGGACAAAATATTTTCGATTGGAA 59.788 34.615 10.53 0.00 37.44 3.53
1828 2002 5.717178 TGGGGACAAAATATTTTCGATTGGA 59.283 36.000 10.53 0.00 37.44 3.53
1829 2003 5.810074 GTGGGGACAAAATATTTTCGATTGG 59.190 40.000 10.53 1.78 46.06 3.16
1834 2008 6.238925 GGGATAGTGGGGACAAAATATTTTCG 60.239 42.308 10.53 9.07 46.06 3.46
1835 2009 6.839134 AGGGATAGTGGGGACAAAATATTTTC 59.161 38.462 10.53 1.10 46.06 2.29
1836 2010 6.752091 AGGGATAGTGGGGACAAAATATTTT 58.248 36.000 7.64 7.64 46.06 1.82
1841 2015 4.202781 ACAAAGGGATAGTGGGGACAAAAT 60.203 41.667 0.00 0.00 46.06 1.82
1842 2016 3.141272 ACAAAGGGATAGTGGGGACAAAA 59.859 43.478 0.00 0.00 46.06 2.44
1846 2020 4.790718 ATTACAAAGGGATAGTGGGGAC 57.209 45.455 0.00 0.00 0.00 4.46
1847 2021 5.544682 ACTATTACAAAGGGATAGTGGGGA 58.455 41.667 0.00 0.00 35.78 4.81
1848 2022 5.368523 TGACTATTACAAAGGGATAGTGGGG 59.631 44.000 0.42 0.00 36.88 4.96
1889 2067 8.654485 TTATAAACTAGTACAGAGGAACACCA 57.346 34.615 0.00 0.00 0.00 4.17
1892 2070 7.398047 TGGCTTATAAACTAGTACAGAGGAACA 59.602 37.037 0.00 0.00 0.00 3.18
1893 2071 7.779073 TGGCTTATAAACTAGTACAGAGGAAC 58.221 38.462 0.00 0.00 0.00 3.62
1965 2143 2.560542 TGACAATGGTAAACATGGCCAC 59.439 45.455 8.16 0.00 40.44 5.01
1985 2163 6.770746 ATTTTCAAATCTGATGGAGGAGTG 57.229 37.500 0.00 0.00 0.00 3.51
2005 2183 9.057089 AGTTCGTTCAAAAGATAAGACAGATTT 57.943 29.630 0.00 0.00 0.00 2.17
2008 2186 9.706691 ATAAGTTCGTTCAAAAGATAAGACAGA 57.293 29.630 0.00 0.00 0.00 3.41
2132 2316 5.303078 ACACACACAAATGTTAAATGGCCTA 59.697 36.000 3.32 0.00 36.72 3.93
2149 2333 5.229921 ACACATAGAAAACACACACACAC 57.770 39.130 0.00 0.00 0.00 3.82
2151 2335 7.444245 CAAAAACACATAGAAAACACACACAC 58.556 34.615 0.00 0.00 0.00 3.82
2153 2337 6.090088 TGCAAAAACACATAGAAAACACACAC 59.910 34.615 0.00 0.00 0.00 3.82
2156 2342 6.625362 TCTGCAAAAACACATAGAAAACACA 58.375 32.000 0.00 0.00 0.00 3.72
2246 2432 4.155826 CGAACCATACAGGATTTTGCTCAA 59.844 41.667 0.00 0.00 41.22 3.02
2332 2518 7.391148 TTTCAACTTGAAGTAGAGCAAAAGT 57.609 32.000 0.00 0.00 37.70 2.66
2383 2570 7.935755 ACTCTGCATGCAGTATTTATAACTGAT 59.064 33.333 39.08 12.21 45.89 2.90
2442 2629 4.218312 AGTGGAAACCAAGCAGAAGAAAT 58.782 39.130 0.00 0.00 34.18 2.17
2471 2659 3.740832 TCACAGTGTTCATTAGTTCGCTG 59.259 43.478 0.00 0.00 42.01 5.18
2492 2680 3.179830 CATTGGTACTACGACACAGCTC 58.820 50.000 0.00 0.00 0.00 4.09
2530 2725 2.738846 CCAACAGATTCAGGTGACGAAG 59.261 50.000 0.00 0.00 0.00 3.79
2573 2768 6.932400 CCGTAACTAAAATATGTCAGCCCATA 59.068 38.462 0.00 0.00 0.00 2.74
2575 2770 5.120399 CCGTAACTAAAATATGTCAGCCCA 58.880 41.667 0.00 0.00 0.00 5.36
2588 2790 6.047870 TGAACAACTGTAAGCCGTAACTAAA 58.952 36.000 0.00 0.00 37.60 1.85
2596 2798 4.481930 TGATTTGAACAACTGTAAGCCG 57.518 40.909 0.00 0.00 37.60 5.52
2598 2800 9.463443 ACTAAAATGATTTGAACAACTGTAAGC 57.537 29.630 0.00 0.00 37.60 3.09
2604 2806 8.257306 ACAACCACTAAAATGATTTGAACAACT 58.743 29.630 0.00 0.00 0.00 3.16
2605 2807 8.419076 ACAACCACTAAAATGATTTGAACAAC 57.581 30.769 0.00 0.00 0.00 3.32
2606 2808 9.442047 AAACAACCACTAAAATGATTTGAACAA 57.558 25.926 0.00 0.00 0.00 2.83
2659 2863 6.317391 GCTAGCAATACACCTTTTGAAGATCT 59.683 38.462 10.63 0.00 0.00 2.75
2699 2904 6.122850 TCACTGCATATGAGCAATAAACAC 57.877 37.500 6.97 0.00 45.13 3.32
2723 2928 0.251297 TGCATGTAACTTGGCCAGCT 60.251 50.000 5.11 0.00 0.00 4.24
2724 2929 0.171903 CTGCATGTAACTTGGCCAGC 59.828 55.000 5.11 3.59 0.00 4.85
3006 3211 4.159557 TGGATGATGCATAGCTACTACCA 58.840 43.478 0.00 0.00 0.00 3.25
3018 3223 9.749340 AAATAAATATCTCTCATGGATGATGCA 57.251 29.630 0.00 0.00 36.02 3.96
3122 3327 1.369091 CGGTTCCCGCCTTCTCATTG 61.369 60.000 0.00 0.00 41.17 2.82
3141 3346 4.055360 GTTGCATTGTTTCCCTAAACCAC 58.945 43.478 0.00 0.00 43.66 4.16
3258 3465 4.769688 CTGCCATCCTGTAACATCACTTA 58.230 43.478 0.00 0.00 0.00 2.24
3309 3516 2.637382 TGTTTGCTACATCCAGTCTCCA 59.363 45.455 0.00 0.00 0.00 3.86
3310 3517 3.003480 GTGTTTGCTACATCCAGTCTCC 58.997 50.000 0.00 0.00 39.39 3.71
3348 3555 9.214957 CACAATACCATTAGAGAGTTTGTACAA 57.785 33.333 3.59 3.59 0.00 2.41
3361 3568 9.119418 TCCAAATACACATCACAATACCATTAG 57.881 33.333 0.00 0.00 0.00 1.73
3368 3575 7.643569 AATGCTCCAAATACACATCACAATA 57.356 32.000 0.00 0.00 0.00 1.90
3410 3617 1.508088 GAGCAAGGGCCATGTTTCG 59.492 57.895 10.87 0.00 42.56 3.46
3440 3647 1.048601 GCACCGGATATCTCCTTGGA 58.951 55.000 9.46 0.00 39.65 3.53
3455 3662 1.275573 ACCGTAAGAAGAGGAAGCACC 59.724 52.381 0.00 0.00 43.02 5.01
3648 3855 8.855110 TCAATTTTGTTGTGGACAGTATATGTT 58.145 29.630 0.00 0.00 44.17 2.71
3677 3884 4.864806 ACAAATCTGACTGCATAGTACACG 59.135 41.667 0.00 0.00 37.25 4.49
3750 3959 7.040892 CCTTGATACAATACACATCTTCCATGG 60.041 40.741 4.97 4.97 0.00 3.66
3862 4075 6.848562 AAGGACCCTAGAATGGATATGTTT 57.151 37.500 0.00 0.00 0.00 2.83
3875 4088 5.253330 TGTTGAATTTGCTAAGGACCCTAG 58.747 41.667 0.00 0.00 0.00 3.02
4021 4234 0.964358 GCTTGGCATGAGCAGACCTT 60.964 55.000 6.30 0.00 44.61 3.50
4060 4273 2.107204 AGGCAATAGAATCCGAGGCAAT 59.893 45.455 0.00 0.00 0.00 3.56
4061 4274 1.490490 AGGCAATAGAATCCGAGGCAA 59.510 47.619 0.00 0.00 0.00 4.52
4062 4275 1.070758 GAGGCAATAGAATCCGAGGCA 59.929 52.381 0.00 0.00 0.00 4.75
4064 4277 2.630098 TCTGAGGCAATAGAATCCGAGG 59.370 50.000 0.00 0.00 0.00 4.63
4065 4278 4.244066 CATCTGAGGCAATAGAATCCGAG 58.756 47.826 0.00 0.00 0.00 4.63
4067 4280 3.332919 CCATCTGAGGCAATAGAATCCG 58.667 50.000 0.00 0.00 0.00 4.18
4068 4281 3.073650 ACCCATCTGAGGCAATAGAATCC 59.926 47.826 0.00 0.00 0.00 3.01
4069 4282 4.070716 CACCCATCTGAGGCAATAGAATC 58.929 47.826 0.00 0.00 0.00 2.52
4070 4283 3.181436 CCACCCATCTGAGGCAATAGAAT 60.181 47.826 0.00 0.00 0.00 2.40
4071 4284 2.173356 CCACCCATCTGAGGCAATAGAA 59.827 50.000 0.00 0.00 0.00 2.10
4072 4285 1.770658 CCACCCATCTGAGGCAATAGA 59.229 52.381 0.00 0.00 0.00 1.98
4087 4308 2.369394 CTAAATCTTGACCTGCCACCC 58.631 52.381 0.00 0.00 0.00 4.61
4182 4407 7.645058 AAATCACCAAACCTATGAGTTATGG 57.355 36.000 0.00 0.00 35.66 2.74
4211 4520 7.653311 AGAACATAAAAGAATGTTGGTTGAAGC 59.347 33.333 6.93 0.00 42.01 3.86
4250 4559 7.921786 ACATTCGGATAGTTTCTCAAATTGA 57.078 32.000 0.00 0.00 0.00 2.57
4289 4598 3.558418 TGAAAAACCGTCAACAGCTCTAC 59.442 43.478 0.00 0.00 0.00 2.59
4302 4611 5.643777 AGTATCCAGACAAGATGAAAAACCG 59.356 40.000 0.00 0.00 0.00 4.44
4394 4703 4.389576 GTCTTTGCGCGGCCACTG 62.390 66.667 8.83 0.00 0.00 3.66
4400 4709 0.800683 TATCGACTGTCTTTGCGCGG 60.801 55.000 8.83 0.00 0.00 6.46
4430 4739 2.353357 TGGCTTCAATCCAGGCATAG 57.647 50.000 0.00 0.00 41.64 2.23
4531 4841 7.556844 TGACCAAGACTGATAAAGAGGAATAC 58.443 38.462 0.00 0.00 0.00 1.89
4548 4858 5.124457 GCATCTTCTTTAGCAATGACCAAGA 59.876 40.000 0.00 0.00 0.00 3.02
4607 4937 0.391661 GCTTGATGCTCCTCGGTTCA 60.392 55.000 0.00 0.00 38.95 3.18
4667 4997 7.769044 GGTACATCTACAACACTACATTGGAAT 59.231 37.037 0.00 0.00 0.00 3.01
4668 4998 7.101054 GGTACATCTACAACACTACATTGGAA 58.899 38.462 0.00 0.00 0.00 3.53
4670 5000 5.518847 CGGTACATCTACAACACTACATTGG 59.481 44.000 0.00 0.00 0.00 3.16
4671 5001 6.097356 ACGGTACATCTACAACACTACATTG 58.903 40.000 0.00 0.00 0.00 2.82
4672 5002 6.276832 ACGGTACATCTACAACACTACATT 57.723 37.500 0.00 0.00 0.00 2.71
4673 5003 5.909621 ACGGTACATCTACAACACTACAT 57.090 39.130 0.00 0.00 0.00 2.29
4707 5037 1.265454 ACTAGCTTTGGGACGGAGGG 61.265 60.000 0.00 0.00 0.00 4.30
4708 5038 1.136500 GTACTAGCTTTGGGACGGAGG 59.864 57.143 0.00 0.00 0.00 4.30
4709 5039 1.822990 TGTACTAGCTTTGGGACGGAG 59.177 52.381 0.00 0.00 0.00 4.63
4710 5040 1.927487 TGTACTAGCTTTGGGACGGA 58.073 50.000 0.00 0.00 0.00 4.69
4711 5041 2.754946 TTGTACTAGCTTTGGGACGG 57.245 50.000 0.00 0.00 0.00 4.79
4712 5042 3.660865 ACTTTGTACTAGCTTTGGGACG 58.339 45.455 0.00 0.00 0.00 4.79
4713 5043 5.061179 TCAACTTTGTACTAGCTTTGGGAC 58.939 41.667 0.00 0.00 0.00 4.46
4714 5044 5.163237 ACTCAACTTTGTACTAGCTTTGGGA 60.163 40.000 0.00 0.00 0.00 4.37
4715 5045 5.063880 ACTCAACTTTGTACTAGCTTTGGG 58.936 41.667 0.00 0.00 0.00 4.12
4716 5046 5.758296 TGACTCAACTTTGTACTAGCTTTGG 59.242 40.000 0.00 0.00 0.00 3.28
4717 5047 6.844696 TGACTCAACTTTGTACTAGCTTTG 57.155 37.500 0.00 0.00 0.00 2.77
4718 5048 8.451908 AAATGACTCAACTTTGTACTAGCTTT 57.548 30.769 0.00 0.00 0.00 3.51
4719 5049 9.726438 ATAAATGACTCAACTTTGTACTAGCTT 57.274 29.630 0.00 0.00 0.00 3.74
4720 5050 9.726438 AATAAATGACTCAACTTTGTACTAGCT 57.274 29.630 0.00 0.00 0.00 3.32
4724 5054 9.965824 CCAAAATAAATGACTCAACTTTGTACT 57.034 29.630 0.00 0.00 0.00 2.73
4725 5055 9.191995 CCCAAAATAAATGACTCAACTTTGTAC 57.808 33.333 0.00 0.00 0.00 2.90
4726 5056 9.137459 TCCCAAAATAAATGACTCAACTTTGTA 57.863 29.630 0.00 0.00 0.00 2.41
4727 5057 7.926018 GTCCCAAAATAAATGACTCAACTTTGT 59.074 33.333 0.00 0.00 0.00 2.83
4728 5058 7.114811 CGTCCCAAAATAAATGACTCAACTTTG 59.885 37.037 0.00 0.00 0.00 2.77
4729 5059 7.145323 CGTCCCAAAATAAATGACTCAACTTT 58.855 34.615 0.00 0.00 0.00 2.66
4730 5060 6.294508 CCGTCCCAAAATAAATGACTCAACTT 60.295 38.462 0.00 0.00 0.00 2.66
4731 5061 5.183140 CCGTCCCAAAATAAATGACTCAACT 59.817 40.000 0.00 0.00 0.00 3.16
4732 5062 5.182380 TCCGTCCCAAAATAAATGACTCAAC 59.818 40.000 0.00 0.00 0.00 3.18
4733 5063 5.317808 TCCGTCCCAAAATAAATGACTCAA 58.682 37.500 0.00 0.00 0.00 3.02
4734 5064 4.912586 TCCGTCCCAAAATAAATGACTCA 58.087 39.130 0.00 0.00 0.00 3.41
4735 5065 4.335594 CCTCCGTCCCAAAATAAATGACTC 59.664 45.833 0.00 0.00 0.00 3.36
4736 5066 4.270008 CCTCCGTCCCAAAATAAATGACT 58.730 43.478 0.00 0.00 0.00 3.41
4737 5067 3.380320 CCCTCCGTCCCAAAATAAATGAC 59.620 47.826 0.00 0.00 0.00 3.06
4738 5068 3.267291 TCCCTCCGTCCCAAAATAAATGA 59.733 43.478 0.00 0.00 0.00 2.57
4739 5069 3.626930 TCCCTCCGTCCCAAAATAAATG 58.373 45.455 0.00 0.00 0.00 2.32
4740 5070 3.268595 ACTCCCTCCGTCCCAAAATAAAT 59.731 43.478 0.00 0.00 0.00 1.40
4741 5071 2.645797 ACTCCCTCCGTCCCAAAATAAA 59.354 45.455 0.00 0.00 0.00 1.40
4742 5072 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4743 5073 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4744 5074 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
4745 5075 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
4746 5076 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
4747 5077 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
4748 5078 0.115745 AAAGTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
4749 5079 1.273759 AAAAGTACTCCCTCCGTCCC 58.726 55.000 0.00 0.00 0.00 4.46
4750 5080 4.750021 ATAAAAAGTACTCCCTCCGTCC 57.250 45.455 0.00 0.00 0.00 4.79
4751 5081 8.037166 TCTAAAATAAAAAGTACTCCCTCCGTC 58.963 37.037 0.00 0.00 0.00 4.79
4752 5082 7.910584 TCTAAAATAAAAAGTACTCCCTCCGT 58.089 34.615 0.00 0.00 0.00 4.69
4753 5083 8.959705 ATCTAAAATAAAAAGTACTCCCTCCG 57.040 34.615 0.00 0.00 0.00 4.63
4770 5100 9.458727 CCATCCATCTAGCATACAATCTAAAAT 57.541 33.333 0.00 0.00 0.00 1.82
4771 5101 7.391554 GCCATCCATCTAGCATACAATCTAAAA 59.608 37.037 0.00 0.00 0.00 1.52
4780 5110 4.221703 ACTGTAGCCATCCATCTAGCATAC 59.778 45.833 0.00 0.00 0.00 2.39
4861 5191 1.478510 AGAATCGCGACAAGATCAGGT 59.521 47.619 12.93 0.00 0.00 4.00
4898 5228 4.406003 AGACCAGACCAACACAGATATACC 59.594 45.833 0.00 0.00 0.00 2.73
4993 5368 2.547826 GGTACTTCGATAACAGTGGCC 58.452 52.381 0.00 0.00 0.00 5.36
5006 5381 6.202762 TGTTCATGCATATTCATCGGTACTTC 59.797 38.462 0.00 0.00 0.00 3.01
5013 5388 6.432107 TGTCATTGTTCATGCATATTCATCG 58.568 36.000 0.00 0.00 32.13 3.84
5017 5392 8.867112 AAGAATGTCATTGTTCATGCATATTC 57.133 30.769 1.88 1.05 32.52 1.75
5066 5441 0.301687 ATCGCGCATGATGAACGAAC 59.698 50.000 8.75 0.00 36.22 3.95
5067 5442 1.005032 GAATCGCGCATGATGAACGAA 60.005 47.619 8.75 0.05 36.22 3.85
5068 5443 0.576798 GAATCGCGCATGATGAACGA 59.423 50.000 8.75 11.59 37.15 3.85
5069 5444 0.715959 CGAATCGCGCATGATGAACG 60.716 55.000 8.75 6.78 0.00 3.95
5102 5477 5.071115 GGAGATTAGCTAGGAACACCTGATT 59.929 44.000 0.00 0.00 35.45 2.57
5189 5564 5.984725 TGGTTCCTGATTAACACGATATGT 58.015 37.500 0.00 0.00 46.42 2.29
5190 5565 6.280643 TCTGGTTCCTGATTAACACGATATG 58.719 40.000 0.00 0.00 0.00 1.78
5191 5566 6.479972 TCTGGTTCCTGATTAACACGATAT 57.520 37.500 0.00 0.00 0.00 1.63
5196 5571 5.163713 GCTCAATCTGGTTCCTGATTAACAC 60.164 44.000 18.66 9.08 34.44 3.32
5247 5634 5.392767 TGTTTTTGTTCCAAGTTAGTGCA 57.607 34.783 0.00 0.00 0.00 4.57
5258 5645 4.037923 TCTGCTCTCCATTGTTTTTGTTCC 59.962 41.667 0.00 0.00 0.00 3.62
5259 5646 5.186996 TCTGCTCTCCATTGTTTTTGTTC 57.813 39.130 0.00 0.00 0.00 3.18
5263 5650 3.006217 GCCTTCTGCTCTCCATTGTTTTT 59.994 43.478 0.00 0.00 36.87 1.94
5290 5677 2.997897 AGCACCCTCCCTGACGAC 60.998 66.667 0.00 0.00 0.00 4.34
5291 5678 2.997315 CAGCACCCTCCCTGACGA 60.997 66.667 0.00 0.00 0.00 4.20
5292 5679 4.767255 GCAGCACCCTCCCTGACG 62.767 72.222 0.00 0.00 0.00 4.35
5444 5831 4.088056 AGCTTCCATGGATCATCTCTTG 57.912 45.455 17.06 0.00 0.00 3.02
5546 5933 1.693640 CCAGAAAGGGGTGCCAGAT 59.306 57.895 0.00 0.00 0.00 2.90
5619 6006 3.129813 TGTGCTTGATTTCATGGAGATGC 59.870 43.478 0.00 0.00 0.00 3.91
5633 6020 6.499172 TCATTGACGTTAATTTTGTGCTTGA 58.501 32.000 2.31 0.00 0.00 3.02
5634 6021 6.636447 TCTCATTGACGTTAATTTTGTGCTTG 59.364 34.615 2.31 0.00 0.00 4.01
5640 6027 7.007367 CACGGATTCTCATTGACGTTAATTTTG 59.993 37.037 2.31 0.00 31.61 2.44
5645 6032 4.562082 ACACGGATTCTCATTGACGTTAA 58.438 39.130 0.00 0.00 31.61 2.01
5647 6034 3.040147 ACACGGATTCTCATTGACGTT 57.960 42.857 0.00 0.00 31.61 3.99
5649 6036 3.481951 CGAAACACGGATTCTCATTGACG 60.482 47.826 0.00 0.00 38.46 4.35
5650 6037 3.678072 TCGAAACACGGATTCTCATTGAC 59.322 43.478 0.00 0.00 42.82 3.18
5651 6038 3.678072 GTCGAAACACGGATTCTCATTGA 59.322 43.478 0.00 0.00 42.82 2.57
5652 6039 3.679980 AGTCGAAACACGGATTCTCATTG 59.320 43.478 0.00 0.00 42.82 2.82
5653 6040 3.679980 CAGTCGAAACACGGATTCTCATT 59.320 43.478 0.00 0.00 42.82 2.57
5655 6042 2.672714 CAGTCGAAACACGGATTCTCA 58.327 47.619 0.00 0.00 42.82 3.27
5656 6043 1.390463 GCAGTCGAAACACGGATTCTC 59.610 52.381 0.00 0.00 42.82 2.87
5657 6044 1.000955 AGCAGTCGAAACACGGATTCT 59.999 47.619 0.00 0.00 42.82 2.40
5659 6046 2.288579 TGTAGCAGTCGAAACACGGATT 60.289 45.455 0.00 0.00 42.82 3.01
5661 6048 0.669619 TGTAGCAGTCGAAACACGGA 59.330 50.000 0.00 0.00 42.82 4.69
5662 6049 0.782384 GTGTAGCAGTCGAAACACGG 59.218 55.000 0.00 0.00 42.82 4.94
5663 6050 1.483316 TGTGTAGCAGTCGAAACACG 58.517 50.000 0.00 0.00 44.03 4.49
5674 6061 4.811908 ACGTGTATATGTGTTGTGTAGCA 58.188 39.130 0.00 0.00 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.