Multiple sequence alignment - TraesCS2B01G570000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G570000 chr2B 100.000 6702 0 0 1 6702 760878132 760884833 0.000000e+00 12377.0
1 TraesCS2B01G570000 chr2D 94.067 4601 212 36 1875 6438 620504518 620509094 0.000000e+00 6927.0
2 TraesCS2B01G570000 chr2D 88.206 1399 85 38 459 1825 620503169 620504519 0.000000e+00 1596.0
3 TraesCS2B01G570000 chr2D 91.837 196 16 0 229 424 620502967 620503162 2.380000e-69 274.0
4 TraesCS2B01G570000 chr2D 86.517 178 13 7 1 178 620502619 620502785 1.150000e-42 185.0
5 TraesCS2B01G570000 chr2A 93.146 4771 216 54 1875 6591 752087468 752092181 0.000000e+00 6896.0
6 TraesCS2B01G570000 chr2A 87.088 1123 57 34 734 1825 752086404 752087469 0.000000e+00 1190.0
7 TraesCS2B01G570000 chr7B 86.027 823 81 18 1050 1867 62938845 62938052 0.000000e+00 852.0
8 TraesCS2B01G570000 chr4A 80.508 354 60 9 3189 3538 4161781 4162129 5.150000e-66 263.0
9 TraesCS2B01G570000 chr4B 84.153 183 26 3 3358 3538 584505929 584505748 2.480000e-39 174.0
10 TraesCS2B01G570000 chr6A 79.839 124 22 3 3355 3476 578546590 578546712 3.330000e-13 87.9
11 TraesCS2B01G570000 chr1D 100.000 32 0 0 680 711 267382232 267382263 7.260000e-05 60.2
12 TraesCS2B01G570000 chr1A 100.000 30 0 0 680 709 335829506 335829477 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G570000 chr2B 760878132 760884833 6701 False 12377.0 12377 100.00000 1 6702 1 chr2B.!!$F1 6701
1 TraesCS2B01G570000 chr2D 620502619 620509094 6475 False 2245.5 6927 90.15675 1 6438 4 chr2D.!!$F1 6437
2 TraesCS2B01G570000 chr2A 752086404 752092181 5777 False 4043.0 6896 90.11700 734 6591 2 chr2A.!!$F1 5857
3 TraesCS2B01G570000 chr7B 62938052 62938845 793 True 852.0 852 86.02700 1050 1867 1 chr7B.!!$R1 817

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.109723 TGACCGGCTAAAGCTTGGTT 59.890 50.0 16.74 0.00 45.05 3.67 F
1616 1816 0.034670 AGCCAGCATCTCCCTTTCAC 60.035 55.0 0.00 0.00 0.00 3.18 F
1980 2186 0.334676 TTTTGGAGGGGAATCGGCAT 59.665 50.0 0.00 0.00 0.00 4.40 F
3172 3407 0.251253 TCCACCATGTGCAGCATTCA 60.251 50.0 0.00 0.00 35.19 2.57 F
3642 3885 0.463474 GCTGCTAGGGCCTCAAGAAG 60.463 60.0 10.74 8.37 37.74 2.85 F
5120 5374 0.179043 TGCGTAACCTTGCTTGTCCA 60.179 50.0 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1926 2132 0.032540 CACAAAGCAAAGGGCCAGAC 59.967 55.0 6.18 0.00 46.5 3.51 R
2941 3176 0.029300 TTTTTGCTGTCTGACGCTGC 59.971 50.0 19.62 15.74 0.0 5.25 R
3246 3481 0.247460 CTGTGGATGCGTCTGAAGGA 59.753 55.0 5.77 0.00 0.0 3.36 R
5091 5345 0.247736 AGGTTACGCAGCAGAGAAGG 59.752 55.0 0.00 0.00 0.0 3.46 R
5242 5496 0.249868 CCGTCTTGAACCAGCTGTGA 60.250 55.0 13.81 0.00 0.0 3.58 R
6542 6827 0.325296 TTCCCATCGGCCTGACTACT 60.325 55.0 0.00 0.00 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.109723 TGACCGGCTAAAGCTTGGTT 59.890 50.000 16.74 0.00 45.05 3.67
30 31 1.244816 GACCGGCTAAAGCTTGGTTT 58.755 50.000 16.74 3.33 45.05 3.27
31 32 2.224572 TGACCGGCTAAAGCTTGGTTTA 60.225 45.455 16.74 5.16 45.05 2.01
74 75 4.265056 GCGGACACCCACCAAGGT 62.265 66.667 0.00 0.00 42.40 3.50
81 82 4.366684 CCCACCAAGGTCAGGGCC 62.367 72.222 0.00 0.00 33.91 5.80
104 105 4.489771 CATCCCTGCGACCCCCAC 62.490 72.222 0.00 0.00 0.00 4.61
110 111 4.248842 TGCGACCCCCACACACAG 62.249 66.667 0.00 0.00 0.00 3.66
113 114 4.660938 GACCCCCACACACAGCCC 62.661 72.222 0.00 0.00 0.00 5.19
115 116 4.351054 CCCCCACACACAGCCCTC 62.351 72.222 0.00 0.00 0.00 4.30
116 117 4.351054 CCCCACACACAGCCCTCC 62.351 72.222 0.00 0.00 0.00 4.30
117 118 3.252284 CCCACACACAGCCCTCCT 61.252 66.667 0.00 0.00 0.00 3.69
118 119 2.833913 CCCACACACAGCCCTCCTT 61.834 63.158 0.00 0.00 0.00 3.36
119 120 1.302832 CCACACACAGCCCTCCTTC 60.303 63.158 0.00 0.00 0.00 3.46
123 124 2.612115 CACAGCCCTCCTTCCCCT 60.612 66.667 0.00 0.00 0.00 4.79
135 136 3.392947 CTCCTTCCCCTTCTTCCTTATCC 59.607 52.174 0.00 0.00 0.00 2.59
162 163 0.745128 TCCTCTCGCTCGAACTCCTC 60.745 60.000 0.00 0.00 0.00 3.71
167 168 2.776913 CGCTCGAACTCCTCCTCCC 61.777 68.421 0.00 0.00 0.00 4.30
178 179 3.157252 TCCTCCCAGATGCTCGCC 61.157 66.667 0.00 0.00 0.00 5.54
179 180 4.598894 CCTCCCAGATGCTCGCCG 62.599 72.222 0.00 0.00 0.00 6.46
183 184 4.923942 CCAGATGCTCGCCGCCAT 62.924 66.667 0.00 0.00 38.05 4.40
184 185 3.646976 CAGATGCTCGCCGCCATG 61.647 66.667 0.00 0.00 38.05 3.66
185 186 4.166888 AGATGCTCGCCGCCATGT 62.167 61.111 0.00 0.00 38.05 3.21
186 187 3.643978 GATGCTCGCCGCCATGTC 61.644 66.667 0.00 0.00 38.05 3.06
194 195 4.473520 CCGCCATGTCCGCCTTCT 62.474 66.667 0.00 0.00 0.00 2.85
195 196 2.436646 CGCCATGTCCGCCTTCTT 60.437 61.111 0.00 0.00 0.00 2.52
196 197 2.464459 CGCCATGTCCGCCTTCTTC 61.464 63.158 0.00 0.00 0.00 2.87
197 198 2.115291 GCCATGTCCGCCTTCTTCC 61.115 63.158 0.00 0.00 0.00 3.46
198 199 1.452108 CCATGTCCGCCTTCTTCCC 60.452 63.158 0.00 0.00 0.00 3.97
199 200 1.452108 CATGTCCGCCTTCTTCCCC 60.452 63.158 0.00 0.00 0.00 4.81
200 201 2.680370 ATGTCCGCCTTCTTCCCCC 61.680 63.158 0.00 0.00 0.00 5.40
255 387 1.673993 CATAACCCGTGTGGCTGCA 60.674 57.895 0.50 0.00 37.83 4.41
261 393 2.429571 CGTGTGGCTGCATGTTGC 60.430 61.111 0.50 0.00 45.29 4.17
277 409 4.114997 GCGTTTCCGTGGCCATGG 62.115 66.667 34.89 34.89 38.85 3.66
301 433 1.508088 GAGTTCTTTGGCCATGGCG 59.492 57.895 29.90 16.49 43.06 5.69
407 539 1.522806 GCCATGGACGGCGATGTTA 60.523 57.895 18.40 0.00 43.52 2.41
418 550 1.919918 GGCGATGTTATTTTGCTGCAC 59.080 47.619 0.00 0.00 0.00 4.57
446 578 1.439644 TTTTTGCTGGAACCGGTGC 59.560 52.632 8.52 5.63 0.00 5.01
447 579 1.040339 TTTTTGCTGGAACCGGTGCT 61.040 50.000 13.69 0.00 0.00 4.40
448 580 0.179015 TTTTGCTGGAACCGGTGCTA 60.179 50.000 13.69 5.21 0.00 3.49
449 581 0.887387 TTTGCTGGAACCGGTGCTAC 60.887 55.000 13.69 2.63 0.00 3.58
450 582 2.046009 TTGCTGGAACCGGTGCTACA 62.046 55.000 13.69 5.54 0.00 2.74
451 583 1.302192 GCTGGAACCGGTGCTACAA 60.302 57.895 13.69 0.00 0.00 2.41
452 584 0.676782 GCTGGAACCGGTGCTACAAT 60.677 55.000 13.69 0.00 0.00 2.71
453 585 1.821216 CTGGAACCGGTGCTACAATT 58.179 50.000 13.69 0.00 0.00 2.32
454 586 1.468520 CTGGAACCGGTGCTACAATTG 59.531 52.381 13.69 3.24 0.00 2.32
455 587 1.202830 TGGAACCGGTGCTACAATTGT 60.203 47.619 13.69 16.68 0.00 2.71
456 588 1.883926 GGAACCGGTGCTACAATTGTT 59.116 47.619 17.78 0.95 0.00 2.83
457 589 3.075884 GGAACCGGTGCTACAATTGTTA 58.924 45.455 17.78 0.97 0.00 2.41
534 666 4.569564 CCTATTAGGTCGTTTGCTACAACC 59.430 45.833 1.17 0.00 0.00 3.77
539 671 1.154727 CGTTTGCTACAACCGACGC 60.155 57.895 0.00 0.00 0.00 5.19
557 689 1.533547 CGCTGCAACAATGTTGTGACA 60.534 47.619 24.71 14.50 41.31 3.58
578 710 1.074319 GCGCGACGAGATACAAACCA 61.074 55.000 12.10 0.00 0.00 3.67
622 756 2.029073 CTGCAACCGTGTCTCCGT 59.971 61.111 0.00 0.00 0.00 4.69
628 762 0.463116 AACCGTGTCTCCGTTTTGCT 60.463 50.000 0.00 0.00 0.00 3.91
629 763 1.157870 ACCGTGTCTCCGTTTTGCTG 61.158 55.000 0.00 0.00 0.00 4.41
630 764 1.082756 CGTGTCTCCGTTTTGCTGC 60.083 57.895 0.00 0.00 0.00 5.25
671 805 1.595382 CTCCAATCGGACGGATGCC 60.595 63.158 0.00 0.00 35.91 4.40
675 809 3.757248 AATCGGACGGATGCCAGCC 62.757 63.158 0.00 0.00 34.93 4.85
848 1013 4.717313 GACCAACCCACCTCGCCC 62.717 72.222 0.00 0.00 0.00 6.13
893 1058 1.552799 CCCCCAAATTTCTGGTGGCC 61.553 60.000 0.00 0.00 34.33 5.36
1423 1613 1.579429 CCGAGCCTTTCCGTTTTGG 59.421 57.895 0.00 0.00 40.09 3.28
1457 1654 2.440409 TCGTTCGCCTCCTAACTAACT 58.560 47.619 0.00 0.00 0.00 2.24
1459 1656 4.009675 TCGTTCGCCTCCTAACTAACTAA 58.990 43.478 0.00 0.00 0.00 2.24
1460 1657 4.101235 CGTTCGCCTCCTAACTAACTAAC 58.899 47.826 0.00 0.00 0.00 2.34
1461 1658 4.379813 CGTTCGCCTCCTAACTAACTAACA 60.380 45.833 0.00 0.00 0.00 2.41
1462 1659 4.978083 TCGCCTCCTAACTAACTAACAG 57.022 45.455 0.00 0.00 0.00 3.16
1463 1660 3.129988 TCGCCTCCTAACTAACTAACAGC 59.870 47.826 0.00 0.00 0.00 4.40
1464 1661 3.445857 GCCTCCTAACTAACTAACAGCG 58.554 50.000 0.00 0.00 0.00 5.18
1465 1662 3.445857 CCTCCTAACTAACTAACAGCGC 58.554 50.000 0.00 0.00 0.00 5.92
1466 1663 3.445857 CTCCTAACTAACTAACAGCGCC 58.554 50.000 2.29 0.00 0.00 6.53
1588 1785 4.395231 CGGCTCTATCATAGTCGATGGTAA 59.605 45.833 0.00 0.00 36.08 2.85
1589 1786 5.447954 CGGCTCTATCATAGTCGATGGTAAG 60.448 48.000 0.00 0.00 36.08 2.34
1590 1787 5.416326 GGCTCTATCATAGTCGATGGTAAGT 59.584 44.000 0.00 0.00 36.08 2.24
1616 1816 0.034670 AGCCAGCATCTCCCTTTCAC 60.035 55.000 0.00 0.00 0.00 3.18
1649 1851 4.569761 TCTAGTTAGCCAGCGATTGTAG 57.430 45.455 0.00 0.00 0.00 2.74
1652 1854 4.408182 AGTTAGCCAGCGATTGTAGAAT 57.592 40.909 0.00 0.00 0.00 2.40
1653 1855 5.531122 AGTTAGCCAGCGATTGTAGAATA 57.469 39.130 0.00 0.00 0.00 1.75
1654 1856 5.914033 AGTTAGCCAGCGATTGTAGAATAA 58.086 37.500 0.00 0.00 0.00 1.40
1655 1857 5.986135 AGTTAGCCAGCGATTGTAGAATAAG 59.014 40.000 0.00 0.00 0.00 1.73
1656 1858 4.408182 AGCCAGCGATTGTAGAATAAGT 57.592 40.909 0.00 0.00 0.00 2.24
1657 1859 4.122776 AGCCAGCGATTGTAGAATAAGTG 58.877 43.478 0.00 0.00 0.00 3.16
1664 1866 9.411801 CAGCGATTGTAGAATAAGTGTGTATAT 57.588 33.333 0.00 0.00 0.00 0.86
1699 1901 8.062231 CATTGATTGCTTCATTAAGAGATTGC 57.938 34.615 0.00 0.00 34.37 3.56
1704 1906 6.519679 TGCTTCATTAAGAGATTGCACAAT 57.480 33.333 0.00 0.00 34.37 2.71
1733 1935 1.354368 TCCCCCATTTGGACAACTCTC 59.646 52.381 0.00 0.00 37.39 3.20
1793 1999 3.770040 CCATGCGTCCGGACTCCA 61.770 66.667 30.92 25.98 0.00 3.86
1809 2015 4.262894 GGACTCCAGATTCCACTGTTAACA 60.263 45.833 8.28 8.28 36.30 2.41
1840 2046 3.378112 ACATAACATGGTTCAAGCATCCG 59.622 43.478 0.00 0.00 33.46 4.18
1867 2073 5.585445 TGCAATTGAAAGCAAACACTTCAAT 59.415 32.000 10.34 3.95 37.90 2.57
1868 2074 6.093771 TGCAATTGAAAGCAAACACTTCAATT 59.906 30.769 10.34 13.51 37.59 2.32
1869 2075 7.279536 TGCAATTGAAAGCAAACACTTCAATTA 59.720 29.630 17.10 5.29 36.44 1.40
1870 2076 7.583762 GCAATTGAAAGCAAACACTTCAATTAC 59.416 33.333 17.10 10.97 36.44 1.89
1871 2077 8.819974 CAATTGAAAGCAAACACTTCAATTACT 58.180 29.630 17.10 0.00 36.44 2.24
1873 2079 9.683069 ATTGAAAGCAAACACTTCAATTACTAG 57.317 29.630 3.95 0.00 37.59 2.57
1874 2080 8.445275 TGAAAGCAAACACTTCAATTACTAGA 57.555 30.769 0.00 0.00 0.00 2.43
1875 2081 8.342634 TGAAAGCAAACACTTCAATTACTAGAC 58.657 33.333 0.00 0.00 0.00 2.59
1876 2082 7.801716 AAGCAAACACTTCAATTACTAGACA 57.198 32.000 0.00 0.00 0.00 3.41
1926 2132 3.555956 GTCGTTATGGTAGGCTGATTGTG 59.444 47.826 0.00 0.00 0.00 3.33
1971 2177 3.627577 CGTGATAGTCATTTTTGGAGGGG 59.372 47.826 0.00 0.00 0.00 4.79
1980 2186 0.334676 TTTTGGAGGGGAATCGGCAT 59.665 50.000 0.00 0.00 0.00 4.40
2010 2218 5.017294 TGACCCCTGTTGTTTTGATTTTC 57.983 39.130 0.00 0.00 0.00 2.29
2026 2234 6.345096 TGATTTTCTGGCCTCCTTTAAAAG 57.655 37.500 3.32 0.00 0.00 2.27
2085 2297 3.561725 GTGGATCAGGCTATTGCAAGTAC 59.438 47.826 4.94 0.00 41.91 2.73
2124 2336 2.281761 CCTTCTGGGCGTTGTGCT 60.282 61.111 0.00 0.00 45.43 4.40
2149 2361 3.788227 TTCTGGTAAGCTGTGGTGATT 57.212 42.857 0.00 0.00 0.00 2.57
2308 2520 7.953005 TCATTTATGTCCTAATTTTGCTGGA 57.047 32.000 0.00 0.00 0.00 3.86
2482 2700 6.912591 CCATTTCTATAGACAACATTTTCCGC 59.087 38.462 0.67 0.00 0.00 5.54
2529 2748 5.286082 GTGAATTCACTTGAAACACACACAC 59.714 40.000 27.66 0.00 43.25 3.82
2530 2749 5.048434 TGAATTCACTTGAAACACACACACA 60.048 36.000 3.38 0.00 37.61 3.72
2531 2750 3.822594 TCACTTGAAACACACACACAC 57.177 42.857 0.00 0.00 0.00 3.82
2532 2751 3.142174 TCACTTGAAACACACACACACA 58.858 40.909 0.00 0.00 0.00 3.72
2664 2898 9.512588 CCAGATATTCTTGCCATAAACTCTATT 57.487 33.333 0.00 0.00 0.00 1.73
2723 2957 0.593773 GCGCGACCAATTGTTGTTGT 60.594 50.000 12.10 0.00 0.00 3.32
2736 2970 1.143073 GTTGTTGTCCTTCCCCTCTGT 59.857 52.381 0.00 0.00 0.00 3.41
2834 3069 7.977818 ACCTTCATCACTATTTCTATATGGCA 58.022 34.615 0.00 0.00 0.00 4.92
2857 3092 6.515035 GCAGCCCTGTTATATGGTTACATTTC 60.515 42.308 0.00 0.00 38.53 2.17
2873 3108 7.361116 GGTTACATTTCTTTGCCCATCAATTTG 60.361 37.037 0.00 0.00 34.12 2.32
2880 3115 6.297582 TCTTTGCCCATCAATTTGTTTCAAT 58.702 32.000 0.00 0.00 34.12 2.57
2889 3124 7.011669 CCATCAATTTGTTTCAATAATCAGGGC 59.988 37.037 0.00 0.00 0.00 5.19
2892 3127 2.745968 TGTTTCAATAATCAGGGCCCC 58.254 47.619 21.43 0.00 0.00 5.80
2932 3167 9.810545 TTTCAATTAAGAAAAGAAACCACGAAT 57.189 25.926 0.00 0.00 34.77 3.34
2941 3176 5.424121 AAGAAACCACGAATGAGTTCTTG 57.576 39.130 0.00 0.00 37.36 3.02
2944 3179 2.146342 ACCACGAATGAGTTCTTGCAG 58.854 47.619 0.00 0.00 33.56 4.41
2947 3182 0.792640 CGAATGAGTTCTTGCAGCGT 59.207 50.000 0.00 0.00 32.00 5.07
3052 3287 3.031013 AGTTCAAAAGACCCCAAACAGG 58.969 45.455 0.00 0.00 37.03 4.00
3055 3290 1.119684 AAAAGACCCCAAACAGGCAC 58.880 50.000 0.00 0.00 35.39 5.01
3076 3311 4.351054 GGCCAGGGGGTGTCACAG 62.351 72.222 5.12 0.00 36.17 3.66
3078 3313 2.750350 CCAGGGGGTGTCACAGAC 59.250 66.667 5.12 0.00 0.00 3.51
3095 3330 7.172875 TGTCACAGACTAGTAACTAGAGAACAC 59.827 40.741 0.00 0.00 37.49 3.32
3129 3364 0.535102 CTTCTTCGTTGGGGTGCTGT 60.535 55.000 0.00 0.00 0.00 4.40
3133 3368 0.394488 TTCGTTGGGGTGCTGTTTCA 60.394 50.000 0.00 0.00 0.00 2.69
3143 3378 3.629398 GGGTGCTGTTTCAGATATTCCAG 59.371 47.826 0.66 0.00 32.44 3.86
3152 3387 4.199002 TCAGATATTCCAGGGTGCTCTA 57.801 45.455 0.00 0.00 0.00 2.43
3172 3407 0.251253 TCCACCATGTGCAGCATTCA 60.251 50.000 0.00 0.00 35.19 2.57
3178 3413 0.540133 ATGTGCAGCATTCACCACCA 60.540 50.000 0.00 0.00 33.14 4.17
3220 3455 0.823460 AACCCACCTTTTGCAGTGTG 59.177 50.000 3.47 2.37 31.88 3.82
3228 3463 2.684881 CCTTTTGCAGTGTGTCAGTCTT 59.315 45.455 0.00 0.00 0.00 3.01
3244 3479 3.129287 CAGTCTTGTTCCAGTGCAAAAGT 59.871 43.478 0.00 0.00 0.00 2.66
3246 3481 4.220602 AGTCTTGTTCCAGTGCAAAAGTTT 59.779 37.500 0.00 0.00 0.00 2.66
3249 3484 3.096092 TGTTCCAGTGCAAAAGTTTCCT 58.904 40.909 0.00 0.00 0.00 3.36
3255 3497 4.354587 CAGTGCAAAAGTTTCCTTCAGAC 58.645 43.478 0.00 0.00 0.00 3.51
3264 3506 0.684535 TTCCTTCAGACGCATCCACA 59.315 50.000 0.00 0.00 0.00 4.17
3267 3509 0.671472 CTTCAGACGCATCCACAGCA 60.671 55.000 0.00 0.00 0.00 4.41
3274 3516 1.642037 CGCATCCACAGCAAGGTCTG 61.642 60.000 0.00 0.00 39.86 3.51
3312 3554 2.576191 CCTCCCTGTAAATCCTGGAACA 59.424 50.000 0.00 0.00 0.00 3.18
3330 3572 4.083802 GGAACAGTTTTGTCCAATCTCTCG 60.084 45.833 0.00 0.00 36.23 4.04
3334 3576 5.180117 ACAGTTTTGTCCAATCTCTCGAATG 59.820 40.000 0.00 0.00 29.46 2.67
3367 3609 5.396772 CCAATCCTAGCACCTGTTTCATAGA 60.397 44.000 0.00 0.00 0.00 1.98
3394 3637 6.964464 TCCAGGAGCACCTATAAAAACAATA 58.036 36.000 1.02 0.00 45.94 1.90
3576 3819 7.536895 TGGTTGATGAACAATTTCAAACTTG 57.463 32.000 6.45 0.00 45.01 3.16
3580 3823 9.824534 GTTGATGAACAATTTCAAACTTGTTTT 57.175 25.926 11.11 4.60 45.01 2.43
3611 3854 5.178623 CGTATGTTTCTAACTCAACTTGGCA 59.821 40.000 0.00 0.00 0.00 4.92
3642 3885 0.463474 GCTGCTAGGGCCTCAAGAAG 60.463 60.000 10.74 8.37 37.74 2.85
3738 3981 5.405935 AGCATTTTTATGTTCCCTTGGTC 57.594 39.130 0.00 0.00 0.00 4.02
3807 4050 1.502690 ACCTTGTGTACCACTGTCCA 58.497 50.000 0.00 0.00 35.11 4.02
3813 4056 4.157849 TGTGTACCACTGTCCATTTGAA 57.842 40.909 0.00 0.00 35.11 2.69
3821 4066 9.139174 GTACCACTGTCCATTTGAATAATTTTG 57.861 33.333 0.00 0.00 0.00 2.44
3906 4156 6.785488 TCGCATATTATTGTGTCAGAATCC 57.215 37.500 0.00 0.00 0.00 3.01
3928 4178 0.468226 AGTCACGGTTCAAGCTGGAA 59.532 50.000 0.00 0.00 0.00 3.53
3929 4179 0.868406 GTCACGGTTCAAGCTGGAAG 59.132 55.000 2.97 0.00 0.00 3.46
3948 4198 5.196695 GGAAGCCTGGAACTTCTCAATTAT 58.803 41.667 12.05 0.00 42.58 1.28
4003 4253 7.419204 TGACGTCAAAATTTAAATCGAACCTT 58.581 30.769 17.62 0.00 0.00 3.50
4080 4333 8.635765 TTTACCTGCTGAAGAAGATATTTTGT 57.364 30.769 0.00 0.00 0.00 2.83
4355 4608 5.244626 ACTTAATGCAAAGAACCTGCTTGAT 59.755 36.000 5.15 0.00 40.59 2.57
4699 4953 6.806249 GCTAATGTAATTTGTTGTAGCTTGCA 59.194 34.615 0.00 0.00 37.87 4.08
4924 5178 3.983821 TCTACCTCCCTTTCCTCTTCTC 58.016 50.000 0.00 0.00 0.00 2.87
4995 5249 6.952773 ATGTAAAAACACACAAGCTTCCTA 57.047 33.333 0.00 0.00 0.00 2.94
5091 5345 5.360591 CCAGATTGGAGGAGTGTATGTTAC 58.639 45.833 0.00 0.00 40.96 2.50
5100 5354 4.160626 AGGAGTGTATGTTACCTTCTCTGC 59.839 45.833 0.00 0.00 0.00 4.26
5120 5374 0.179043 TGCGTAACCTTGCTTGTCCA 60.179 50.000 0.00 0.00 0.00 4.02
5126 5380 1.632589 ACCTTGCTTGTCCATTTCCC 58.367 50.000 0.00 0.00 0.00 3.97
5224 5478 6.749139 TCTATGTATGGATCACTGCTACAAC 58.251 40.000 0.00 0.00 0.00 3.32
5242 5496 1.593787 CACAGAGGTGCTCCGTGAT 59.406 57.895 14.80 0.00 40.23 3.06
5347 5604 8.579850 TTTTAATACTGAACAGCTGATTGGAT 57.420 30.769 23.35 5.27 0.00 3.41
5353 5610 5.182001 ACTGAACAGCTGATTGGATGTTAAC 59.818 40.000 23.35 0.00 44.27 2.01
5381 5638 8.773645 CATAACACAACAAATCTAGAACACTGA 58.226 33.333 0.00 0.00 0.00 3.41
5390 5647 8.543774 ACAAATCTAGAACACTGATGGATAAGT 58.456 33.333 0.00 0.00 0.00 2.24
5396 5653 7.667575 AGAACACTGATGGATAAGTCTGTAT 57.332 36.000 0.00 0.00 0.00 2.29
5403 5660 9.167311 ACTGATGGATAAGTCTGTATTTTTCAC 57.833 33.333 0.00 0.00 0.00 3.18
5557 5814 0.388649 ACAGCGTCGATTCTGGTGAC 60.389 55.000 17.42 0.00 34.76 3.67
5583 5840 7.148407 CCAGTTTATCGCACTTTTATCTTCACT 60.148 37.037 0.00 0.00 0.00 3.41
5584 5841 8.869897 CAGTTTATCGCACTTTTATCTTCACTA 58.130 33.333 0.00 0.00 0.00 2.74
5585 5842 9.431887 AGTTTATCGCACTTTTATCTTCACTAA 57.568 29.630 0.00 0.00 0.00 2.24
5671 5928 2.320587 CCAGAAGTCACGCCACAGC 61.321 63.158 0.00 0.00 0.00 4.40
5685 5942 0.438830 CACAGCGGTTCGTCTTTAGC 59.561 55.000 0.00 0.00 0.00 3.09
5688 5945 0.456312 AGCGGTTCGTCTTTAGCGAG 60.456 55.000 0.00 0.00 39.61 5.03
5721 5978 4.880537 CCTGACGGCCGCAGCTAG 62.881 72.222 31.50 20.41 39.73 3.42
5800 6057 3.328535 TCTATACAGCATCAGTCCCCA 57.671 47.619 0.00 0.00 0.00 4.96
5893 6152 2.260844 ATCGGTTATGGGATGCTGTG 57.739 50.000 0.00 0.00 0.00 3.66
5913 6172 3.438087 GTGTAGCACAAGTGAATGCATCT 59.562 43.478 0.00 0.00 44.59 2.90
5941 6200 5.234972 TGTGCGCATTTAGTATGATTCTCTG 59.765 40.000 15.91 0.00 0.00 3.35
6013 6272 7.706607 CGTCTATTTATCTTGAACTGGATCACA 59.293 37.037 0.00 0.00 0.00 3.58
6021 6282 7.439157 TCTTGAACTGGATCACACTAATTTG 57.561 36.000 0.00 0.00 0.00 2.32
6036 6297 1.341080 ATTTGTGGTTGCCCTTCCAG 58.659 50.000 0.00 0.00 34.16 3.86
6041 6302 0.555769 TGGTTGCCCTTCCAGTTCTT 59.444 50.000 0.00 0.00 0.00 2.52
6043 6304 1.613925 GGTTGCCCTTCCAGTTCTTTC 59.386 52.381 0.00 0.00 0.00 2.62
6081 6342 5.500645 AATATGGCTTTTACTCTTTCGGC 57.499 39.130 0.00 0.00 0.00 5.54
6117 6378 8.912787 TTGAAGTTCTAGCTTTATCTAAGTCG 57.087 34.615 4.17 0.00 36.19 4.18
6120 6381 9.228636 GAAGTTCTAGCTTTATCTAAGTCGAAG 57.771 37.037 0.00 0.00 36.19 3.79
6126 6387 6.566141 AGCTTTATCTAAGTCGAAGTTCTCC 58.434 40.000 0.56 0.00 36.19 3.71
6130 6391 9.453325 CTTTATCTAAGTCGAAGTTCTCCATAC 57.547 37.037 0.56 0.00 0.00 2.39
6235 6506 9.562408 TGAAACTAATTTGTGTAGTGGATGTTA 57.438 29.630 0.00 0.00 32.10 2.41
6314 6588 0.109597 GCAACCACTCCAATTCTGCG 60.110 55.000 0.00 0.00 0.00 5.18
6317 6591 0.321653 ACCACTCCAATTCTGCGGTC 60.322 55.000 0.00 0.00 0.00 4.79
6347 6622 3.383825 GGATCAAGCCTCATTGAATTGCT 59.616 43.478 0.00 0.53 42.21 3.91
6351 6626 4.397103 TCAAGCCTCATTGAATTGCTACAG 59.603 41.667 5.68 1.60 36.28 2.74
6367 6642 2.656560 ACAGTAAGAGACCATCGTGC 57.343 50.000 0.00 0.00 0.00 5.34
6442 6717 4.556942 ATTGCCACAATCGTGTATGATG 57.443 40.909 0.00 0.00 41.93 3.07
6455 6730 0.678950 TATGATGGAGATTCGCCGCA 59.321 50.000 1.81 3.45 0.00 5.69
6459 6734 0.392998 ATGGAGATTCGCCGCAAAGT 60.393 50.000 1.81 0.00 0.00 2.66
6467 6742 0.604243 TCGCCGCAAAGTACATTGGT 60.604 50.000 12.40 0.00 0.00 3.67
6471 6746 2.151202 CCGCAAAGTACATTGGTGAGT 58.849 47.619 12.40 0.00 0.00 3.41
6498 6773 1.830477 CCTGATCTAGATAGGCAGCCC 59.170 57.143 8.22 0.00 0.00 5.19
6499 6774 2.533916 CTGATCTAGATAGGCAGCCCA 58.466 52.381 8.22 0.00 0.00 5.36
6501 6776 3.317406 TGATCTAGATAGGCAGCCCAAA 58.683 45.455 8.22 0.00 0.00 3.28
6502 6777 3.912528 TGATCTAGATAGGCAGCCCAAAT 59.087 43.478 8.22 0.00 0.00 2.32
6503 6778 4.352001 TGATCTAGATAGGCAGCCCAAATT 59.648 41.667 8.22 0.00 0.00 1.82
6504 6779 4.796110 TCTAGATAGGCAGCCCAAATTT 57.204 40.909 8.22 0.00 0.00 1.82
6519 6804 2.206576 AATTTCCTTTGCGAGGCTCT 57.793 45.000 13.50 0.00 45.87 4.09
6529 6814 5.529060 CCTTTGCGAGGCTCTAAAGAATAAT 59.471 40.000 28.06 0.00 39.09 1.28
6530 6815 6.038714 CCTTTGCGAGGCTCTAAAGAATAATT 59.961 38.462 28.06 0.00 39.09 1.40
6532 6817 7.391148 TTGCGAGGCTCTAAAGAATAATTTT 57.609 32.000 13.50 0.00 0.00 1.82
6544 6829 9.893305 CTAAAGAATAATTTTTGTCGTTGGAGT 57.107 29.630 0.00 0.00 0.00 3.85
6560 6845 0.755698 GAGTAGTCAGGCCGATGGGA 60.756 60.000 0.00 0.00 34.06 4.37
6562 6847 0.759346 GTAGTCAGGCCGATGGGAAT 59.241 55.000 0.00 0.00 34.06 3.01
6594 6879 2.725221 ATGTTCTCCATGAAGAGGCC 57.275 50.000 0.00 0.00 35.01 5.19
6595 6880 1.361204 TGTTCTCCATGAAGAGGCCA 58.639 50.000 5.01 0.00 35.01 5.36
6596 6881 1.704628 TGTTCTCCATGAAGAGGCCAA 59.295 47.619 5.01 0.00 35.01 4.52
6597 6882 2.309755 TGTTCTCCATGAAGAGGCCAAT 59.690 45.455 5.01 0.00 35.01 3.16
6598 6883 2.948315 GTTCTCCATGAAGAGGCCAATC 59.052 50.000 5.01 0.00 35.01 2.67
6599 6884 2.199208 TCTCCATGAAGAGGCCAATCA 58.801 47.619 5.01 6.55 34.46 2.57
6600 6885 2.577563 TCTCCATGAAGAGGCCAATCAA 59.422 45.455 5.01 0.00 34.46 2.57
6601 6886 2.950309 CTCCATGAAGAGGCCAATCAAG 59.050 50.000 5.01 3.01 0.00 3.02
6602 6887 2.577563 TCCATGAAGAGGCCAATCAAGA 59.422 45.455 5.01 5.10 0.00 3.02
6603 6888 3.203710 TCCATGAAGAGGCCAATCAAGAT 59.796 43.478 5.01 0.00 0.00 2.40
6604 6889 3.958798 CCATGAAGAGGCCAATCAAGATT 59.041 43.478 5.01 0.00 0.00 2.40
6605 6890 4.404715 CCATGAAGAGGCCAATCAAGATTT 59.595 41.667 5.01 0.00 0.00 2.17
6606 6891 5.105064 CCATGAAGAGGCCAATCAAGATTTT 60.105 40.000 5.01 0.00 0.00 1.82
6607 6892 5.649782 TGAAGAGGCCAATCAAGATTTTC 57.350 39.130 5.01 0.00 0.00 2.29
6608 6893 5.327732 TGAAGAGGCCAATCAAGATTTTCT 58.672 37.500 5.01 0.00 0.00 2.52
6609 6894 5.416952 TGAAGAGGCCAATCAAGATTTTCTC 59.583 40.000 5.01 1.73 0.00 2.87
6610 6895 5.190357 AGAGGCCAATCAAGATTTTCTCT 57.810 39.130 5.01 10.77 34.96 3.10
6611 6896 6.319048 AGAGGCCAATCAAGATTTTCTCTA 57.681 37.500 5.01 0.00 32.31 2.43
6612 6897 6.355747 AGAGGCCAATCAAGATTTTCTCTAG 58.644 40.000 5.01 0.00 32.31 2.43
6613 6898 6.157645 AGAGGCCAATCAAGATTTTCTCTAGA 59.842 38.462 5.01 0.00 32.31 2.43
6614 6899 6.355747 AGGCCAATCAAGATTTTCTCTAGAG 58.644 40.000 13.98 13.98 32.41 2.43
6615 6900 5.530543 GGCCAATCAAGATTTTCTCTAGAGG 59.469 44.000 19.67 1.12 32.41 3.69
6616 6901 5.530543 GCCAATCAAGATTTTCTCTAGAGGG 59.469 44.000 19.67 8.88 32.41 4.30
6617 6902 6.633583 GCCAATCAAGATTTTCTCTAGAGGGA 60.634 42.308 19.67 6.30 32.41 4.20
6618 6903 6.765512 CCAATCAAGATTTTCTCTAGAGGGAC 59.234 42.308 19.67 7.41 32.41 4.46
6619 6904 7.334090 CAATCAAGATTTTCTCTAGAGGGACA 58.666 38.462 19.67 2.95 32.41 4.02
6620 6905 6.287589 TCAAGATTTTCTCTAGAGGGACAC 57.712 41.667 19.67 9.01 32.41 3.67
6621 6906 5.187967 TCAAGATTTTCTCTAGAGGGACACC 59.812 44.000 19.67 5.56 32.41 4.16
6622 6907 4.689062 AGATTTTCTCTAGAGGGACACCA 58.311 43.478 19.67 0.00 33.26 4.17
6623 6908 5.284582 AGATTTTCTCTAGAGGGACACCAT 58.715 41.667 19.67 3.08 33.26 3.55
6624 6909 4.826274 TTTTCTCTAGAGGGACACCATG 57.174 45.455 19.67 0.00 40.13 3.66
6625 6910 3.757947 TTCTCTAGAGGGACACCATGA 57.242 47.619 19.67 0.00 40.13 3.07
6626 6911 3.981516 TCTCTAGAGGGACACCATGAT 57.018 47.619 19.67 0.00 40.13 2.45
6627 6912 3.838565 TCTCTAGAGGGACACCATGATC 58.161 50.000 19.67 0.00 40.13 2.92
6628 6913 2.896685 CTCTAGAGGGACACCATGATCC 59.103 54.545 12.27 0.00 40.13 3.36
6629 6914 2.247372 TCTAGAGGGACACCATGATCCA 59.753 50.000 11.36 0.00 40.13 3.41
6630 6915 2.203120 AGAGGGACACCATGATCCAT 57.797 50.000 11.36 5.47 40.13 3.41
6631 6916 2.496297 AGAGGGACACCATGATCCATT 58.504 47.619 11.36 1.44 40.13 3.16
6632 6917 2.174210 AGAGGGACACCATGATCCATTG 59.826 50.000 11.36 0.00 40.13 2.82
6633 6918 2.173356 GAGGGACACCATGATCCATTGA 59.827 50.000 11.36 0.00 40.13 2.57
6634 6919 2.174210 AGGGACACCATGATCCATTGAG 59.826 50.000 11.36 0.00 40.13 3.02
6635 6920 2.173356 GGGACACCATGATCCATTGAGA 59.827 50.000 11.36 0.00 36.65 3.27
6636 6921 3.474600 GGACACCATGATCCATTGAGAG 58.525 50.000 0.00 0.00 34.87 3.20
6637 6922 3.135348 GGACACCATGATCCATTGAGAGA 59.865 47.826 0.00 0.00 34.87 3.10
6638 6923 4.384537 GGACACCATGATCCATTGAGAGAA 60.385 45.833 0.00 0.00 34.87 2.87
6639 6924 5.374921 GACACCATGATCCATTGAGAGAAT 58.625 41.667 0.00 0.00 0.00 2.40
6640 6925 6.464892 GGACACCATGATCCATTGAGAGAATA 60.465 42.308 0.00 0.00 34.87 1.75
6641 6926 6.294473 ACACCATGATCCATTGAGAGAATAC 58.706 40.000 0.00 0.00 0.00 1.89
6642 6927 5.704515 CACCATGATCCATTGAGAGAATACC 59.295 44.000 0.00 0.00 0.00 2.73
6643 6928 4.934001 CCATGATCCATTGAGAGAATACCG 59.066 45.833 0.00 0.00 0.00 4.02
6644 6929 5.512060 CCATGATCCATTGAGAGAATACCGT 60.512 44.000 0.00 0.00 0.00 4.83
6645 6930 4.948847 TGATCCATTGAGAGAATACCGTG 58.051 43.478 0.00 0.00 0.00 4.94
6646 6931 4.405680 TGATCCATTGAGAGAATACCGTGT 59.594 41.667 0.00 0.00 0.00 4.49
6647 6932 4.123497 TCCATTGAGAGAATACCGTGTG 57.877 45.455 0.00 0.00 0.00 3.82
6648 6933 3.118775 TCCATTGAGAGAATACCGTGTGG 60.119 47.826 0.00 0.00 42.84 4.17
6649 6934 3.118775 CCATTGAGAGAATACCGTGTGGA 60.119 47.826 0.00 0.00 39.21 4.02
6650 6935 4.503910 CATTGAGAGAATACCGTGTGGAA 58.496 43.478 0.00 0.00 39.21 3.53
6651 6936 4.610605 TTGAGAGAATACCGTGTGGAAA 57.389 40.909 0.00 0.00 39.21 3.13
6652 6937 4.819105 TGAGAGAATACCGTGTGGAAAT 57.181 40.909 0.00 0.00 39.21 2.17
6653 6938 4.755411 TGAGAGAATACCGTGTGGAAATC 58.245 43.478 0.00 0.00 39.21 2.17
6654 6939 3.782046 AGAGAATACCGTGTGGAAATCG 58.218 45.455 0.00 0.00 39.21 3.34
6655 6940 3.446161 AGAGAATACCGTGTGGAAATCGA 59.554 43.478 0.00 0.00 39.21 3.59
6656 6941 3.782046 AGAATACCGTGTGGAAATCGAG 58.218 45.455 0.00 0.00 39.21 4.04
6657 6942 3.194968 AGAATACCGTGTGGAAATCGAGT 59.805 43.478 0.00 0.00 39.21 4.18
6658 6943 4.400251 AGAATACCGTGTGGAAATCGAGTA 59.600 41.667 0.00 0.00 39.21 2.59
6659 6944 4.931661 ATACCGTGTGGAAATCGAGTAT 57.068 40.909 0.00 0.00 39.21 2.12
6660 6945 3.160777 ACCGTGTGGAAATCGAGTATC 57.839 47.619 0.00 0.00 39.21 2.24
6685 6970 5.758924 GTGGAAACAACATGGTTCTCTAAC 58.241 41.667 7.95 0.00 43.35 2.34
6686 6971 5.298276 GTGGAAACAACATGGTTCTCTAACA 59.702 40.000 7.95 0.00 43.35 2.41
6687 6972 5.888724 TGGAAACAACATGGTTCTCTAACAA 59.111 36.000 7.95 0.00 43.35 2.83
6688 6973 6.378564 TGGAAACAACATGGTTCTCTAACAAA 59.621 34.615 7.95 0.00 43.35 2.83
6689 6974 6.695713 GGAAACAACATGGTTCTCTAACAAAC 59.304 38.462 7.95 0.00 43.35 2.93
6690 6975 6.767524 AACAACATGGTTCTCTAACAAACA 57.232 33.333 0.00 0.00 37.34 2.83
6691 6976 6.377327 ACAACATGGTTCTCTAACAAACAG 57.623 37.500 0.00 0.00 37.34 3.16
6692 6977 5.885912 ACAACATGGTTCTCTAACAAACAGT 59.114 36.000 0.00 0.00 37.34 3.55
6693 6978 7.051623 ACAACATGGTTCTCTAACAAACAGTA 58.948 34.615 0.00 0.00 37.34 2.74
6694 6979 7.226720 ACAACATGGTTCTCTAACAAACAGTAG 59.773 37.037 0.00 0.00 37.34 2.57
6695 6980 7.062749 ACATGGTTCTCTAACAAACAGTAGA 57.937 36.000 0.00 0.00 37.34 2.59
6696 6981 7.155328 ACATGGTTCTCTAACAAACAGTAGAG 58.845 38.462 0.00 1.99 37.34 2.43
6697 6982 6.971726 TGGTTCTCTAACAAACAGTAGAGA 57.028 37.500 6.35 6.35 42.09 3.10
6698 6983 7.540474 TGGTTCTCTAACAAACAGTAGAGAT 57.460 36.000 10.37 0.00 42.93 2.75
6699 6984 7.378966 TGGTTCTCTAACAAACAGTAGAGATG 58.621 38.462 10.37 0.00 42.93 2.90
6700 6985 7.015292 TGGTTCTCTAACAAACAGTAGAGATGT 59.985 37.037 10.37 0.00 42.93 3.06
6701 6986 7.873505 GGTTCTCTAACAAACAGTAGAGATGTT 59.126 37.037 10.37 0.00 42.93 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.453950 GAAGCGAGCGACACGACTAA 60.454 55.000 0.00 0.00 0.00 2.24
30 31 1.134075 GAAGCGAGCGACACGACTA 59.866 57.895 0.00 0.00 0.00 2.59
31 32 2.126812 GAAGCGAGCGACACGACT 60.127 61.111 0.00 0.00 0.00 4.18
69 70 2.043652 CATGGGGCCCTGACCTTG 60.044 66.667 25.93 9.49 0.00 3.61
72 73 4.147587 ATGCATGGGGCCCTGACC 62.148 66.667 25.93 5.04 43.89 4.02
73 74 2.520260 GATGCATGGGGCCCTGAC 60.520 66.667 25.93 13.18 43.89 3.51
74 75 3.824425 GGATGCATGGGGCCCTGA 61.824 66.667 25.93 9.44 43.89 3.86
81 82 2.903855 GTCGCAGGGATGCATGGG 60.904 66.667 2.46 9.66 34.41 4.00
102 103 1.302832 GGAAGGAGGGCTGTGTGTG 60.303 63.158 0.00 0.00 0.00 3.82
103 104 2.529744 GGGAAGGAGGGCTGTGTGT 61.530 63.158 0.00 0.00 0.00 3.72
104 105 2.352805 GGGAAGGAGGGCTGTGTG 59.647 66.667 0.00 0.00 0.00 3.82
105 106 2.936032 GGGGAAGGAGGGCTGTGT 60.936 66.667 0.00 0.00 0.00 3.72
106 107 2.203549 GAAGGGGAAGGAGGGCTGTG 62.204 65.000 0.00 0.00 0.00 3.66
107 108 1.925972 GAAGGGGAAGGAGGGCTGT 60.926 63.158 0.00 0.00 0.00 4.40
108 109 1.210885 AAGAAGGGGAAGGAGGGCTG 61.211 60.000 0.00 0.00 0.00 4.85
110 111 1.610327 GAAGAAGGGGAAGGAGGGC 59.390 63.158 0.00 0.00 0.00 5.19
111 112 0.253394 AGGAAGAAGGGGAAGGAGGG 60.253 60.000 0.00 0.00 0.00 4.30
112 113 1.675007 AAGGAAGAAGGGGAAGGAGG 58.325 55.000 0.00 0.00 0.00 4.30
113 114 3.392947 GGATAAGGAAGAAGGGGAAGGAG 59.607 52.174 0.00 0.00 0.00 3.69
114 115 3.015275 AGGATAAGGAAGAAGGGGAAGGA 59.985 47.826 0.00 0.00 0.00 3.36
115 116 3.398490 AGGATAAGGAAGAAGGGGAAGG 58.602 50.000 0.00 0.00 0.00 3.46
116 117 5.458451 AAAGGATAAGGAAGAAGGGGAAG 57.542 43.478 0.00 0.00 0.00 3.46
117 118 5.878484 AAAAGGATAAGGAAGAAGGGGAA 57.122 39.130 0.00 0.00 0.00 3.97
118 119 7.539798 AATAAAAGGATAAGGAAGAAGGGGA 57.460 36.000 0.00 0.00 0.00 4.81
119 120 7.287927 GGAAATAAAAGGATAAGGAAGAAGGGG 59.712 40.741 0.00 0.00 0.00 4.79
123 124 9.907229 GAGAGGAAATAAAAGGATAAGGAAGAA 57.093 33.333 0.00 0.00 0.00 2.52
135 136 4.865365 AGTTCGAGCGAGAGGAAATAAAAG 59.135 41.667 0.00 0.00 0.00 2.27
162 163 4.598894 CGGCGAGCATCTGGGAGG 62.599 72.222 0.00 0.00 0.00 4.30
178 179 2.436646 AAGAAGGCGGACATGGCG 60.437 61.111 0.00 0.00 39.82 5.69
179 180 2.115291 GGAAGAAGGCGGACATGGC 61.115 63.158 0.00 0.00 0.00 4.40
180 181 1.452108 GGGAAGAAGGCGGACATGG 60.452 63.158 0.00 0.00 0.00 3.66
181 182 1.452108 GGGGAAGAAGGCGGACATG 60.452 63.158 0.00 0.00 0.00 3.21
182 183 2.680370 GGGGGAAGAAGGCGGACAT 61.680 63.158 0.00 0.00 0.00 3.06
183 184 3.327404 GGGGGAAGAAGGCGGACA 61.327 66.667 0.00 0.00 0.00 4.02
216 217 2.357517 AAGAAGCTCACGGGCGTG 60.358 61.111 0.00 0.00 46.64 5.34
217 218 2.357517 CAAGAAGCTCACGGGCGT 60.358 61.111 0.00 0.00 37.29 5.68
218 219 3.121030 CCAAGAAGCTCACGGGCG 61.121 66.667 0.00 0.00 37.29 6.13
219 220 2.032681 ACCAAGAAGCTCACGGGC 59.967 61.111 0.00 0.00 0.00 6.13
220 221 0.036010 ATGACCAAGAAGCTCACGGG 60.036 55.000 0.00 0.00 0.00 5.28
221 222 2.672961 TATGACCAAGAAGCTCACGG 57.327 50.000 0.00 0.00 0.00 4.94
222 223 2.673368 GGTTATGACCAAGAAGCTCACG 59.327 50.000 0.88 0.00 45.77 4.35
238 370 1.031571 CATGCAGCCACACGGGTTAT 61.032 55.000 0.00 0.00 42.67 1.89
277 409 2.563427 GCCAAAGAACTCGCAGGC 59.437 61.111 0.00 0.00 34.71 4.85
392 524 2.223479 GCAAAATAACATCGCCGTCCAT 60.223 45.455 0.00 0.00 0.00 3.41
428 560 1.040339 AGCACCGGTTCCAGCAAAAA 61.040 50.000 16.11 0.00 0.00 1.94
429 561 0.179015 TAGCACCGGTTCCAGCAAAA 60.179 50.000 16.11 0.00 0.00 2.44
430 562 0.887387 GTAGCACCGGTTCCAGCAAA 60.887 55.000 16.11 2.04 0.00 3.68
431 563 1.302192 GTAGCACCGGTTCCAGCAA 60.302 57.895 16.11 0.00 0.00 3.91
432 564 2.046009 TTGTAGCACCGGTTCCAGCA 62.046 55.000 16.11 3.47 0.00 4.41
433 565 0.676782 ATTGTAGCACCGGTTCCAGC 60.677 55.000 2.97 5.16 0.00 4.85
434 566 1.468520 CAATTGTAGCACCGGTTCCAG 59.531 52.381 2.97 0.00 0.00 3.86
435 567 1.202830 ACAATTGTAGCACCGGTTCCA 60.203 47.619 9.97 0.00 0.00 3.53
436 568 1.530323 ACAATTGTAGCACCGGTTCC 58.470 50.000 9.97 0.00 0.00 3.62
437 569 3.998341 TCTAACAATTGTAGCACCGGTTC 59.002 43.478 12.39 0.00 0.00 3.62
438 570 3.749609 GTCTAACAATTGTAGCACCGGTT 59.250 43.478 12.39 0.00 0.00 4.44
439 571 3.244284 TGTCTAACAATTGTAGCACCGGT 60.244 43.478 12.39 0.00 0.00 5.28
440 572 3.331150 TGTCTAACAATTGTAGCACCGG 58.669 45.455 12.39 0.00 0.00 5.28
441 573 4.091509 GTCTGTCTAACAATTGTAGCACCG 59.908 45.833 12.39 5.33 0.00 4.94
442 574 4.994852 TGTCTGTCTAACAATTGTAGCACC 59.005 41.667 12.39 0.16 0.00 5.01
443 575 5.388475 CGTGTCTGTCTAACAATTGTAGCAC 60.388 44.000 12.39 14.48 0.00 4.40
444 576 4.684242 CGTGTCTGTCTAACAATTGTAGCA 59.316 41.667 12.39 7.67 0.00 3.49
445 577 4.091509 CCGTGTCTGTCTAACAATTGTAGC 59.908 45.833 12.39 3.33 0.00 3.58
446 578 4.091509 GCCGTGTCTGTCTAACAATTGTAG 59.908 45.833 12.39 9.70 0.00 2.74
447 579 3.991773 GCCGTGTCTGTCTAACAATTGTA 59.008 43.478 12.39 0.00 0.00 2.41
448 580 2.806244 GCCGTGTCTGTCTAACAATTGT 59.194 45.455 4.92 4.92 0.00 2.71
449 581 2.159841 CGCCGTGTCTGTCTAACAATTG 60.160 50.000 3.24 3.24 0.00 2.32
450 582 2.066262 CGCCGTGTCTGTCTAACAATT 58.934 47.619 0.00 0.00 0.00 2.32
451 583 1.671850 CCGCCGTGTCTGTCTAACAAT 60.672 52.381 0.00 0.00 0.00 2.71
452 584 0.319211 CCGCCGTGTCTGTCTAACAA 60.319 55.000 0.00 0.00 0.00 2.83
453 585 1.287815 CCGCCGTGTCTGTCTAACA 59.712 57.895 0.00 0.00 0.00 2.41
454 586 2.092882 GCCGCCGTGTCTGTCTAAC 61.093 63.158 0.00 0.00 0.00 2.34
455 587 2.089887 TTGCCGCCGTGTCTGTCTAA 62.090 55.000 0.00 0.00 0.00 2.10
456 588 2.566570 TTGCCGCCGTGTCTGTCTA 61.567 57.895 0.00 0.00 0.00 2.59
457 589 3.923864 TTGCCGCCGTGTCTGTCT 61.924 61.111 0.00 0.00 0.00 3.41
520 652 1.550659 GCGTCGGTTGTAGCAAACGA 61.551 55.000 16.54 16.54 32.17 3.85
534 666 0.316937 ACAACATTGTTGCAGCGTCG 60.317 50.000 25.60 3.92 38.47 5.12
539 671 2.473609 GCATGTCACAACATTGTTGCAG 59.526 45.455 25.60 19.08 43.74 4.41
557 689 0.921347 GTTTGTATCTCGTCGCGCAT 59.079 50.000 8.75 0.00 0.00 4.73
601 735 1.444119 GGAGACACGGTTGCAGCAAA 61.444 55.000 10.11 0.00 0.00 3.68
622 756 1.459209 CACACGATCGTAGCAGCAAAA 59.541 47.619 22.26 0.00 0.00 2.44
675 809 2.483288 CAATTTTCGGCCGGTCGG 59.517 61.111 30.66 10.38 38.57 4.79
714 848 1.218047 CTCCTCATCGTTTCCGCCA 59.782 57.895 0.00 0.00 0.00 5.69
730 891 1.135731 CACTCGCTCGACTGTCCTC 59.864 63.158 1.55 0.00 0.00 3.71
756 921 1.805945 CTCGGCGAACTACCACTGC 60.806 63.158 12.13 0.00 0.00 4.40
757 922 0.242825 TTCTCGGCGAACTACCACTG 59.757 55.000 12.13 0.00 0.00 3.66
758 923 0.243095 GTTCTCGGCGAACTACCACT 59.757 55.000 12.13 0.00 46.74 4.00
759 924 2.734379 GTTCTCGGCGAACTACCAC 58.266 57.895 12.13 0.00 46.74 4.16
768 933 3.767230 CGTGCACTGTTCTCGGCG 61.767 66.667 16.19 0.00 0.00 6.46
893 1058 2.725008 GGATCGAGAGGCACGGAG 59.275 66.667 0.00 0.00 0.00 4.63
1363 1550 2.040043 AGGATGAGGAGGGGGCAG 60.040 66.667 0.00 0.00 0.00 4.85
1376 1563 1.235696 GAGGCAGGAGGAGGAGGAT 59.764 63.158 0.00 0.00 0.00 3.24
1565 1762 2.750166 ACCATCGACTATGATAGAGCCG 59.250 50.000 6.45 6.86 37.86 5.52
1588 1785 2.432510 GGAGATGCTGGCTGTTACTACT 59.567 50.000 0.00 0.00 0.00 2.57
1589 1786 2.483889 GGGAGATGCTGGCTGTTACTAC 60.484 54.545 0.00 0.00 0.00 2.73
1590 1787 1.762957 GGGAGATGCTGGCTGTTACTA 59.237 52.381 0.00 0.00 0.00 1.82
1616 1816 3.365220 GGCTAACTAGATGATTAAGCGCG 59.635 47.826 0.00 0.00 0.00 6.86
1693 1895 5.240121 GGGAATTTGTTGATTGTGCAATCT 58.760 37.500 21.06 4.03 45.55 2.40
1699 1901 4.556592 ATGGGGGAATTTGTTGATTGTG 57.443 40.909 0.00 0.00 0.00 3.33
1704 1906 3.326297 GTCCAAATGGGGGAATTTGTTGA 59.674 43.478 0.00 0.00 43.17 3.18
1733 1935 6.754209 GTGTAGTGACTGAAGGTAAGATCATG 59.246 42.308 0.00 0.00 0.00 3.07
1809 2015 7.308589 GCTTGAACCATGTTATGTTCTGTTACT 60.309 37.037 12.04 0.00 0.00 2.24
1840 2046 4.060205 AGTGTTTGCTTTCAATTGCATCC 58.940 39.130 0.00 0.00 39.07 3.51
1853 2059 7.661437 TCATGTCTAGTAATTGAAGTGTTTGCT 59.339 33.333 0.00 0.00 0.00 3.91
1873 2079 8.029522 TGACTACTGAAGACAACTAATCATGTC 58.970 37.037 0.00 0.00 44.92 3.06
1874 2080 7.896811 TGACTACTGAAGACAACTAATCATGT 58.103 34.615 0.00 0.00 0.00 3.21
1875 2081 8.939201 ATGACTACTGAAGACAACTAATCATG 57.061 34.615 0.00 0.00 33.57 3.07
1886 2092 5.564048 ACGACCTAATGACTACTGAAGAC 57.436 43.478 0.00 0.00 0.00 3.01
1896 2102 4.038883 AGCCTACCATAACGACCTAATGAC 59.961 45.833 0.00 0.00 0.00 3.06
1926 2132 0.032540 CACAAAGCAAAGGGCCAGAC 59.967 55.000 6.18 0.00 46.50 3.51
1971 2177 4.359706 GGGTCAATAAACAATGCCGATTC 58.640 43.478 0.00 0.00 0.00 2.52
1980 2186 5.941555 AAACAACAGGGGTCAATAAACAA 57.058 34.783 0.00 0.00 0.00 2.83
2085 2297 3.414272 GCATACTTGCTCCAGCCG 58.586 61.111 0.00 0.00 45.77 5.52
2124 2336 4.101898 TCACCACAGCTTACCAGAAAAGTA 59.898 41.667 0.00 0.00 0.00 2.24
2165 2377 2.967076 CGCGCGATGGCTTGGTAT 60.967 61.111 28.94 0.00 36.88 2.73
2177 2389 2.643875 TGATAAATGATTGACGCGCG 57.356 45.000 30.96 30.96 0.00 6.86
2206 2418 6.405842 GGTCAGAGTGTTCCACAAAGAATTTT 60.406 38.462 0.00 0.00 35.03 1.82
2308 2520 6.154877 TGTTACCAAATTCCTGCATGATGATT 59.845 34.615 0.00 0.00 0.00 2.57
2335 2547 3.388024 GTCTTGCATACATAGGGGACTCA 59.612 47.826 0.00 0.00 43.67 3.41
2464 2682 6.345298 TCATCAGCGGAAAATGTTGTCTATA 58.655 36.000 0.00 0.00 0.00 1.31
2482 2700 4.634883 CCCAGTGAGAACTCAAATCATCAG 59.365 45.833 6.08 0.00 41.85 2.90
2706 2940 1.336755 AGGACAACAACAATTGGTCGC 59.663 47.619 10.83 2.18 33.63 5.19
2723 2957 0.252284 GGAGTGACAGAGGGGAAGGA 60.252 60.000 0.00 0.00 0.00 3.36
2736 2970 7.093201 ACCTAAAAATACTAACCATCGGAGTGA 60.093 37.037 0.00 0.00 0.00 3.41
2799 3033 9.559958 GAAATAGTGATGAAGGTAAACAATGTG 57.440 33.333 0.00 0.00 0.00 3.21
2834 3069 6.911308 AGAAATGTAACCATATAACAGGGCT 58.089 36.000 0.00 0.00 0.00 5.19
2857 3092 6.563222 ATTGAAACAAATTGATGGGCAAAG 57.437 33.333 0.00 0.00 40.48 2.77
2873 3108 2.959030 GAGGGGCCCTGATTATTGAAAC 59.041 50.000 34.51 6.80 31.76 2.78
2889 3124 1.002857 AAATGGAACTGAGGGAGGGG 58.997 55.000 0.00 0.00 0.00 4.79
2892 3127 6.886459 TCTTAATTGAAATGGAACTGAGGGAG 59.114 38.462 0.00 0.00 0.00 4.30
2903 3138 8.487176 CGTGGTTTCTTTTCTTAATTGAAATGG 58.513 33.333 0.00 0.00 36.07 3.16
2932 3167 0.389025 TCTGACGCTGCAAGAACTCA 59.611 50.000 0.00 0.00 34.07 3.41
2941 3176 0.029300 TTTTTGCTGTCTGACGCTGC 59.971 50.000 19.62 15.74 0.00 5.25
2944 3179 3.602390 TTAGTTTTTGCTGTCTGACGC 57.398 42.857 14.64 14.64 0.00 5.19
2947 3182 5.296780 CACTCCTTTAGTTTTTGCTGTCTGA 59.703 40.000 0.00 0.00 35.76 3.27
3062 3297 0.898320 CTAGTCTGTGACACCCCCTG 59.102 60.000 2.45 0.00 34.60 4.45
3076 3311 6.814506 TGTGGTGTTCTCTAGTTACTAGTC 57.185 41.667 17.69 8.75 35.72 2.59
3078 3313 6.377429 TCCATGTGGTGTTCTCTAGTTACTAG 59.623 42.308 12.85 12.85 34.60 2.57
3095 3330 3.539604 GAAGAAGACTCCATCCATGTGG 58.460 50.000 0.00 0.00 40.76 4.17
3129 3364 3.782523 AGAGCACCCTGGAATATCTGAAA 59.217 43.478 0.00 0.00 0.00 2.69
3133 3368 4.100373 GGATAGAGCACCCTGGAATATCT 58.900 47.826 0.00 0.00 0.00 1.98
3143 3378 0.839946 ACATGGTGGATAGAGCACCC 59.160 55.000 0.00 0.00 38.17 4.61
3152 3387 1.108776 GAATGCTGCACATGGTGGAT 58.891 50.000 3.57 0.00 39.60 3.41
3172 3407 0.401395 TCCTTGAAGGAGGTGGTGGT 60.401 55.000 10.46 0.00 40.06 4.16
3220 3455 1.953559 TGCACTGGAACAAGACTGAC 58.046 50.000 0.00 0.00 38.70 3.51
3228 3463 3.096092 AGGAAACTTTTGCACTGGAACA 58.904 40.909 0.00 0.00 37.44 3.18
3244 3479 1.071542 TGTGGATGCGTCTGAAGGAAA 59.928 47.619 5.77 0.00 0.00 3.13
3246 3481 0.247460 CTGTGGATGCGTCTGAAGGA 59.753 55.000 5.77 0.00 0.00 3.36
3249 3484 0.250252 TTGCTGTGGATGCGTCTGAA 60.250 50.000 5.77 0.00 0.00 3.02
3255 3497 1.376424 AGACCTTGCTGTGGATGCG 60.376 57.895 0.00 0.00 0.00 4.73
3264 3506 4.015084 CTGATGGAATTTCAGACCTTGCT 58.985 43.478 0.06 0.00 42.63 3.91
3267 3509 4.853007 CTCCTGATGGAATTTCAGACCTT 58.147 43.478 7.12 0.00 42.63 3.50
3274 3516 2.580962 GAGGGCTCCTGATGGAATTTC 58.419 52.381 0.00 0.00 42.66 2.17
3312 3554 5.409826 GTCATTCGAGAGATTGGACAAAACT 59.590 40.000 0.00 0.00 40.76 2.66
3330 3572 3.810310 AGGATTGGTCTCTCGTCATTC 57.190 47.619 0.00 0.00 0.00 2.67
3334 3576 2.025155 TGCTAGGATTGGTCTCTCGTC 58.975 52.381 0.00 0.00 0.00 4.20
3346 3588 5.211973 TCTCTATGAAACAGGTGCTAGGAT 58.788 41.667 0.00 0.00 0.00 3.24
3367 3609 5.191722 TGTTTTTATAGGTGCTCCTGGATCT 59.808 40.000 17.65 0.09 44.81 2.75
3394 3637 4.336280 GGCTGTGGAATTTTAGGAACTCT 58.664 43.478 0.00 0.00 41.75 3.24
3576 3819 7.858583 AGTTAGAAACATACGGTCAGAAAAAC 58.141 34.615 0.00 0.00 0.00 2.43
3580 3823 6.335471 TGAGTTAGAAACATACGGTCAGAA 57.665 37.500 0.00 0.00 0.00 3.02
3611 3854 1.323412 CTAGCAGCCTCGGTATCTGT 58.677 55.000 0.00 0.00 0.00 3.41
3642 3885 5.186198 AGTACAATGTCTCCTTGTATTGCC 58.814 41.667 0.00 0.00 40.22 4.52
3738 3981 7.009174 GTGATAAATGTAAGGGCGAACAAAATG 59.991 37.037 0.00 0.00 0.00 2.32
3821 4066 8.261492 AGTGTCTCAAATCTCATTATGACAAC 57.739 34.615 0.00 0.00 35.43 3.32
3855 4100 9.574516 TCTTCTACTTTTCCAAAGCTAAATCTT 57.425 29.630 0.00 0.00 0.00 2.40
3856 4101 9.746457 ATCTTCTACTTTTCCAAAGCTAAATCT 57.254 29.630 0.00 0.00 0.00 2.40
3863 4111 5.089411 GCGAATCTTCTACTTTTCCAAAGC 58.911 41.667 0.00 0.00 0.00 3.51
3877 4125 8.076714 TCTGACACAATAATATGCGAATCTTC 57.923 34.615 0.00 0.00 0.00 2.87
3906 4156 1.143305 CAGCTTGAACCGTGACTCAG 58.857 55.000 0.00 0.00 0.00 3.35
3913 4163 1.600916 GGCTTCCAGCTTGAACCGT 60.601 57.895 0.00 0.00 41.99 4.83
3928 4178 5.441718 TCATAATTGAGAAGTTCCAGGCT 57.558 39.130 0.00 0.00 0.00 4.58
3929 4179 6.705863 ATTCATAATTGAGAAGTTCCAGGC 57.294 37.500 0.00 0.00 32.27 4.85
3980 4230 7.419204 TCAAGGTTCGATTTAAATTTTGACGT 58.581 30.769 1.43 0.00 0.00 4.34
3988 4238 8.561738 ACACTACATCAAGGTTCGATTTAAAT 57.438 30.769 0.00 0.00 0.00 1.40
4003 4253 6.127703 GGCTTCTACAAGACTACACTACATCA 60.128 42.308 0.00 0.00 34.32 3.07
4080 4333 5.519566 GCAAAAACACATGTCAACAATCTCA 59.480 36.000 0.00 0.00 0.00 3.27
4176 4429 2.436911 AGAACTTACTGGGAACAACGGT 59.563 45.455 0.00 0.00 42.06 4.83
4355 4608 6.992123 CAGCCCACACATAGTCTTATCAATAA 59.008 38.462 0.00 0.00 0.00 1.40
4699 4953 8.378565 CCACTAGGTGATATTTATGTGGAGAAT 58.621 37.037 0.00 0.00 44.40 2.40
4865 5119 7.823310 GCTATCATCTCCATTTCTGTCATGTAT 59.177 37.037 0.00 0.00 0.00 2.29
4924 5178 6.732392 CGACGTAGCAAATTTTCTTTACAGAG 59.268 38.462 0.00 0.00 0.00 3.35
4995 5249 0.921896 CCCTTCACCATCCACCTCAT 59.078 55.000 0.00 0.00 0.00 2.90
5091 5345 0.247736 AGGTTACGCAGCAGAGAAGG 59.752 55.000 0.00 0.00 0.00 3.46
5100 5354 0.517316 GGACAAGCAAGGTTACGCAG 59.483 55.000 0.00 0.00 0.00 5.18
5120 5374 4.520179 AGCGAACCGTATTAAAGGGAAAT 58.480 39.130 0.00 0.00 36.57 2.17
5242 5496 0.249868 CCGTCTTGAACCAGCTGTGA 60.250 55.000 13.81 0.00 0.00 3.58
5347 5604 6.730175 AGATTTGTTGTGTTATGCGTTAACA 58.270 32.000 6.39 7.71 46.18 2.41
5353 5610 6.519761 GTGTTCTAGATTTGTTGTGTTATGCG 59.480 38.462 0.00 0.00 0.00 4.73
5381 5638 8.950210 CACAGTGAAAAATACAGACTTATCCAT 58.050 33.333 0.00 0.00 0.00 3.41
5390 5647 7.272244 TCTCTGTTCACAGTGAAAAATACAGA 58.728 34.615 24.22 24.22 41.69 3.41
5396 5653 3.627577 GCCTCTCTGTTCACAGTGAAAAA 59.372 43.478 17.83 8.46 43.29 1.94
5403 5660 0.884514 TCGAGCCTCTCTGTTCACAG 59.115 55.000 0.02 0.02 45.08 3.66
5557 5814 6.961554 GTGAAGATAAAAGTGCGATAAACTGG 59.038 38.462 0.00 0.00 0.00 4.00
5671 5928 0.982673 CACTCGCTAAAGACGAACCG 59.017 55.000 0.00 0.00 39.39 4.44
5685 5942 1.344458 GATCTATCGCCATGCACTCG 58.656 55.000 0.00 0.00 0.00 4.18
5688 5945 1.001293 TCAGGATCTATCGCCATGCAC 59.999 52.381 0.00 0.00 0.00 4.57
5800 6057 9.764363 CATGTAACCATATCTGTTATGTACACT 57.236 33.333 0.00 0.00 34.85 3.55
5876 6135 2.483876 CTACACAGCATCCCATAACCG 58.516 52.381 0.00 0.00 0.00 4.44
5893 6152 4.409570 CAAGATGCATTCACTTGTGCTAC 58.590 43.478 15.20 0.00 41.78 3.58
5913 6172 5.559427 ATCATACTAAATGCGCACAACAA 57.441 34.783 14.90 0.00 0.00 2.83
5916 6175 5.817296 AGAGAATCATACTAAATGCGCACAA 59.183 36.000 14.90 0.00 37.82 3.33
6023 6284 4.864025 CAGAAAGAACTGGAAGGGCAACC 61.864 52.174 0.00 0.00 45.07 3.77
6075 6336 5.537188 ACTTCAAATAATTTGCAGCCGAAA 58.463 33.333 0.00 0.00 37.41 3.46
6079 6340 6.254373 GCTAGAACTTCAAATAATTTGCAGCC 59.746 38.462 0.00 0.00 37.41 4.85
6081 6342 8.976986 AAGCTAGAACTTCAAATAATTTGCAG 57.023 30.769 0.00 0.00 39.36 4.41
6130 6391 5.816449 ATTTTTCAACAAACTTGGCCAAG 57.184 34.783 38.30 38.30 43.79 3.61
6266 6539 9.982651 TTGAAATCCTAGATTTATCCTAAGTCG 57.017 33.333 2.67 0.00 0.00 4.18
6272 6545 7.577303 TGCACTTGAAATCCTAGATTTATCCT 58.423 34.615 2.67 0.00 0.00 3.24
6276 6549 6.945435 TGGTTGCACTTGAAATCCTAGATTTA 59.055 34.615 2.67 0.00 0.00 1.40
6280 6553 4.072131 GTGGTTGCACTTGAAATCCTAGA 58.928 43.478 0.00 0.00 0.00 2.43
6314 6588 1.696832 GCTTGATCCGTGCTTCGACC 61.697 60.000 3.69 0.00 42.86 4.79
6317 6591 1.424493 GAGGCTTGATCCGTGCTTCG 61.424 60.000 0.00 0.00 39.52 3.79
6347 6622 3.086282 TGCACGATGGTCTCTTACTGTA 58.914 45.455 0.00 0.00 0.00 2.74
6351 6626 3.165058 TCATGCACGATGGTCTCTTAC 57.835 47.619 0.00 0.00 32.26 2.34
6367 6642 5.009710 CAGAATTGGGTGAATCTCCATCATG 59.990 44.000 3.61 0.00 32.48 3.07
6442 6717 0.651031 GTACTTTGCGGCGAATCTCC 59.349 55.000 12.98 0.00 0.00 3.71
6455 6730 4.389374 CAGTCCACTCACCAATGTACTTT 58.611 43.478 0.00 0.00 0.00 2.66
6459 6734 1.003118 GGCAGTCCACTCACCAATGTA 59.997 52.381 0.00 0.00 0.00 2.29
6467 6742 2.024941 TCTAGATCAGGCAGTCCACTCA 60.025 50.000 0.00 0.00 33.74 3.41
6471 6746 3.772387 CCTATCTAGATCAGGCAGTCCA 58.228 50.000 8.95 0.00 33.74 4.02
6529 6814 4.124238 CCTGACTACTCCAACGACAAAAA 58.876 43.478 0.00 0.00 0.00 1.94
6530 6815 3.724374 CCTGACTACTCCAACGACAAAA 58.276 45.455 0.00 0.00 0.00 2.44
6532 6817 1.000506 GCCTGACTACTCCAACGACAA 59.999 52.381 0.00 0.00 0.00 3.18
6542 6827 0.325296 TTCCCATCGGCCTGACTACT 60.325 55.000 0.00 0.00 0.00 2.57
6543 6828 0.759346 ATTCCCATCGGCCTGACTAC 59.241 55.000 0.00 0.00 0.00 2.73
6544 6829 2.391926 TATTCCCATCGGCCTGACTA 57.608 50.000 0.00 0.00 0.00 2.59
6575 6860 1.918262 TGGCCTCTTCATGGAGAACAT 59.082 47.619 4.94 0.00 41.57 2.71
6576 6861 1.361204 TGGCCTCTTCATGGAGAACA 58.639 50.000 4.94 2.02 35.52 3.18
6577 6862 2.496899 TTGGCCTCTTCATGGAGAAC 57.503 50.000 4.94 0.01 35.52 3.01
6578 6863 2.577563 TGATTGGCCTCTTCATGGAGAA 59.422 45.455 4.94 0.00 35.52 2.87
6580 6865 2.723322 TGATTGGCCTCTTCATGGAG 57.277 50.000 3.32 0.00 0.00 3.86
6581 6866 2.577563 TCTTGATTGGCCTCTTCATGGA 59.422 45.455 3.32 3.73 0.00 3.41
6582 6867 3.008835 TCTTGATTGGCCTCTTCATGG 57.991 47.619 3.32 1.51 0.00 3.66
6583 6868 5.593679 AAATCTTGATTGGCCTCTTCATG 57.406 39.130 3.32 6.97 0.00 3.07
6585 6870 5.327732 AGAAAATCTTGATTGGCCTCTTCA 58.672 37.500 3.32 1.00 0.00 3.02
6586 6871 5.651576 AGAGAAAATCTTGATTGGCCTCTTC 59.348 40.000 3.32 0.00 32.99 2.87
6587 6872 5.578073 AGAGAAAATCTTGATTGGCCTCTT 58.422 37.500 3.32 0.00 32.99 2.85
6588 6873 5.190357 AGAGAAAATCTTGATTGGCCTCT 57.810 39.130 3.32 12.38 32.99 3.69
6589 6874 6.352516 TCTAGAGAAAATCTTGATTGGCCTC 58.647 40.000 3.32 0.00 39.64 4.70
6590 6875 6.319048 TCTAGAGAAAATCTTGATTGGCCT 57.681 37.500 3.32 0.00 39.64 5.19
6591 6876 5.530543 CCTCTAGAGAAAATCTTGATTGGCC 59.469 44.000 21.76 0.00 38.79 5.36
6592 6877 5.530543 CCCTCTAGAGAAAATCTTGATTGGC 59.469 44.000 21.76 0.00 38.79 4.52
6593 6878 6.765512 GTCCCTCTAGAGAAAATCTTGATTGG 59.234 42.308 21.76 8.71 38.79 3.16
6594 6879 7.279758 GTGTCCCTCTAGAGAAAATCTTGATTG 59.720 40.741 21.76 0.00 38.79 2.67
6595 6880 7.334858 GTGTCCCTCTAGAGAAAATCTTGATT 58.665 38.462 21.76 0.00 38.79 2.57
6596 6881 6.126911 GGTGTCCCTCTAGAGAAAATCTTGAT 60.127 42.308 21.76 0.00 38.79 2.57
6597 6882 5.187967 GGTGTCCCTCTAGAGAAAATCTTGA 59.812 44.000 21.76 1.95 39.64 3.02
6598 6883 5.046304 TGGTGTCCCTCTAGAGAAAATCTTG 60.046 44.000 21.76 1.42 39.64 3.02
6599 6884 5.094387 TGGTGTCCCTCTAGAGAAAATCTT 58.906 41.667 21.76 0.00 39.64 2.40
6600 6885 4.689062 TGGTGTCCCTCTAGAGAAAATCT 58.311 43.478 21.76 0.00 42.47 2.40
6601 6886 5.129485 TCATGGTGTCCCTCTAGAGAAAATC 59.871 44.000 21.76 5.07 0.00 2.17
6602 6887 5.032846 TCATGGTGTCCCTCTAGAGAAAAT 58.967 41.667 21.76 2.32 0.00 1.82
6603 6888 4.425772 TCATGGTGTCCCTCTAGAGAAAA 58.574 43.478 21.76 3.03 0.00 2.29
6604 6889 4.061131 TCATGGTGTCCCTCTAGAGAAA 57.939 45.455 21.76 5.64 0.00 2.52
6605 6890 3.757947 TCATGGTGTCCCTCTAGAGAA 57.242 47.619 21.76 6.02 0.00 2.87
6606 6891 3.437198 GGATCATGGTGTCCCTCTAGAGA 60.437 52.174 21.76 0.00 0.00 3.10
6607 6892 2.896685 GGATCATGGTGTCCCTCTAGAG 59.103 54.545 13.18 13.18 0.00 2.43
6608 6893 2.247372 TGGATCATGGTGTCCCTCTAGA 59.753 50.000 9.31 0.00 33.45 2.43
6609 6894 2.682594 TGGATCATGGTGTCCCTCTAG 58.317 52.381 9.31 0.00 33.45 2.43
6610 6895 2.866923 TGGATCATGGTGTCCCTCTA 57.133 50.000 9.31 0.00 33.45 2.43
6611 6896 2.174210 CAATGGATCATGGTGTCCCTCT 59.826 50.000 9.31 0.00 33.45 3.69
6612 6897 2.173356 TCAATGGATCATGGTGTCCCTC 59.827 50.000 9.31 0.00 33.45 4.30
6613 6898 2.174210 CTCAATGGATCATGGTGTCCCT 59.826 50.000 9.31 0.00 33.45 4.20
6614 6899 2.173356 TCTCAATGGATCATGGTGTCCC 59.827 50.000 9.31 0.00 33.45 4.46
6615 6900 3.135348 TCTCTCAATGGATCATGGTGTCC 59.865 47.826 0.00 0.00 35.02 4.02
6616 6901 4.412796 TCTCTCAATGGATCATGGTGTC 57.587 45.455 0.00 0.00 0.00 3.67
6617 6902 4.849813 TTCTCTCAATGGATCATGGTGT 57.150 40.909 0.00 0.00 0.00 4.16
6618 6903 5.704515 GGTATTCTCTCAATGGATCATGGTG 59.295 44.000 0.00 0.00 0.00 4.17
6619 6904 5.512060 CGGTATTCTCTCAATGGATCATGGT 60.512 44.000 0.00 0.00 0.00 3.55
6620 6905 4.934001 CGGTATTCTCTCAATGGATCATGG 59.066 45.833 0.00 0.00 0.00 3.66
6621 6906 5.407691 CACGGTATTCTCTCAATGGATCATG 59.592 44.000 0.00 0.00 0.00 3.07
6622 6907 5.070981 ACACGGTATTCTCTCAATGGATCAT 59.929 40.000 0.00 0.00 0.00 2.45
6623 6908 4.405680 ACACGGTATTCTCTCAATGGATCA 59.594 41.667 0.00 0.00 0.00 2.92
6624 6909 4.747108 CACACGGTATTCTCTCAATGGATC 59.253 45.833 0.00 0.00 0.00 3.36
6625 6910 4.443457 CCACACGGTATTCTCTCAATGGAT 60.443 45.833 0.00 0.00 0.00 3.41
6626 6911 3.118775 CCACACGGTATTCTCTCAATGGA 60.119 47.826 0.00 0.00 0.00 3.41
6627 6912 3.118775 TCCACACGGTATTCTCTCAATGG 60.119 47.826 0.00 0.00 0.00 3.16
6628 6913 4.123497 TCCACACGGTATTCTCTCAATG 57.877 45.455 0.00 0.00 0.00 2.82
6629 6914 4.819105 TTCCACACGGTATTCTCTCAAT 57.181 40.909 0.00 0.00 0.00 2.57
6630 6915 4.610605 TTTCCACACGGTATTCTCTCAA 57.389 40.909 0.00 0.00 0.00 3.02
6631 6916 4.676986 CGATTTCCACACGGTATTCTCTCA 60.677 45.833 0.00 0.00 0.00 3.27
6632 6917 3.797256 CGATTTCCACACGGTATTCTCTC 59.203 47.826 0.00 0.00 0.00 3.20
6633 6918 3.446161 TCGATTTCCACACGGTATTCTCT 59.554 43.478 0.00 0.00 0.00 3.10
6634 6919 3.777478 TCGATTTCCACACGGTATTCTC 58.223 45.455 0.00 0.00 0.00 2.87
6635 6920 3.194968 ACTCGATTTCCACACGGTATTCT 59.805 43.478 0.00 0.00 0.00 2.40
6636 6921 3.518590 ACTCGATTTCCACACGGTATTC 58.481 45.455 0.00 0.00 0.00 1.75
6637 6922 3.604875 ACTCGATTTCCACACGGTATT 57.395 42.857 0.00 0.00 0.00 1.89
6638 6923 4.556104 CGATACTCGATTTCCACACGGTAT 60.556 45.833 0.00 0.00 43.74 2.73
6639 6924 3.242837 CGATACTCGATTTCCACACGGTA 60.243 47.826 0.00 0.00 43.74 4.02
6640 6925 2.479049 CGATACTCGATTTCCACACGGT 60.479 50.000 0.00 0.00 43.74 4.83
6641 6926 2.117137 CGATACTCGATTTCCACACGG 58.883 52.381 0.00 0.00 43.74 4.94
6642 6927 2.117137 CCGATACTCGATTTCCACACG 58.883 52.381 0.00 0.00 43.74 4.49
6643 6928 2.858344 CACCGATACTCGATTTCCACAC 59.142 50.000 0.00 0.00 43.74 3.82
6644 6929 2.159156 CCACCGATACTCGATTTCCACA 60.159 50.000 0.00 0.00 43.74 4.17
6645 6930 2.100252 TCCACCGATACTCGATTTCCAC 59.900 50.000 0.00 0.00 43.74 4.02
6646 6931 2.380941 TCCACCGATACTCGATTTCCA 58.619 47.619 0.00 0.00 43.74 3.53
6647 6932 3.447918 TTCCACCGATACTCGATTTCC 57.552 47.619 0.00 0.00 43.74 3.13
6648 6933 4.178540 TGTTTCCACCGATACTCGATTTC 58.821 43.478 0.00 0.00 43.74 2.17
6649 6934 4.196626 TGTTTCCACCGATACTCGATTT 57.803 40.909 0.00 0.00 43.74 2.17
6650 6935 3.880047 TGTTTCCACCGATACTCGATT 57.120 42.857 0.00 0.00 43.74 3.34
6651 6936 3.056393 TGTTGTTTCCACCGATACTCGAT 60.056 43.478 0.00 0.00 43.74 3.59
6652 6937 2.296752 TGTTGTTTCCACCGATACTCGA 59.703 45.455 0.00 0.00 43.74 4.04
6653 6938 2.679450 TGTTGTTTCCACCGATACTCG 58.321 47.619 0.00 0.00 40.07 4.18
6654 6939 3.374058 CCATGTTGTTTCCACCGATACTC 59.626 47.826 0.00 0.00 0.00 2.59
6655 6940 3.244770 ACCATGTTGTTTCCACCGATACT 60.245 43.478 0.00 0.00 0.00 2.12
6656 6941 3.078837 ACCATGTTGTTTCCACCGATAC 58.921 45.455 0.00 0.00 0.00 2.24
6657 6942 3.426787 ACCATGTTGTTTCCACCGATA 57.573 42.857 0.00 0.00 0.00 2.92
6658 6943 2.286365 ACCATGTTGTTTCCACCGAT 57.714 45.000 0.00 0.00 0.00 4.18
6659 6944 1.950909 GAACCATGTTGTTTCCACCGA 59.049 47.619 0.00 0.00 0.00 4.69
6660 6945 1.953686 AGAACCATGTTGTTTCCACCG 59.046 47.619 0.00 0.00 0.00 4.94
6661 6946 3.222603 AGAGAACCATGTTGTTTCCACC 58.777 45.455 0.00 0.00 0.00 4.61
6662 6947 5.298276 TGTTAGAGAACCATGTTGTTTCCAC 59.702 40.000 0.00 0.00 34.38 4.02
6663 6948 5.441500 TGTTAGAGAACCATGTTGTTTCCA 58.558 37.500 0.00 0.00 34.38 3.53
6664 6949 6.385649 TTGTTAGAGAACCATGTTGTTTCC 57.614 37.500 0.00 0.00 34.38 3.13
6665 6950 7.254852 TGTTTGTTAGAGAACCATGTTGTTTC 58.745 34.615 0.00 0.00 34.38 2.78
6666 6951 7.093945 ACTGTTTGTTAGAGAACCATGTTGTTT 60.094 33.333 0.00 0.00 34.38 2.83
6667 6952 6.377146 ACTGTTTGTTAGAGAACCATGTTGTT 59.623 34.615 0.00 0.00 34.38 2.83
6668 6953 5.885912 ACTGTTTGTTAGAGAACCATGTTGT 59.114 36.000 0.00 0.00 34.38 3.32
6669 6954 6.377327 ACTGTTTGTTAGAGAACCATGTTG 57.623 37.500 0.00 0.00 34.38 3.33
6670 6955 7.506114 TCTACTGTTTGTTAGAGAACCATGTT 58.494 34.615 0.00 0.00 34.38 2.71
6671 6956 7.015292 TCTCTACTGTTTGTTAGAGAACCATGT 59.985 37.037 5.97 0.00 41.21 3.21
6672 6957 7.378966 TCTCTACTGTTTGTTAGAGAACCATG 58.621 38.462 5.97 0.00 41.21 3.66
6673 6958 7.540474 TCTCTACTGTTTGTTAGAGAACCAT 57.460 36.000 5.97 0.00 41.21 3.55
6674 6959 6.971726 TCTCTACTGTTTGTTAGAGAACCA 57.028 37.500 5.97 0.00 41.21 3.67
6675 6960 7.379750 ACATCTCTACTGTTTGTTAGAGAACC 58.620 38.462 11.35 0.00 45.36 3.62
6676 6961 8.819643 AACATCTCTACTGTTTGTTAGAGAAC 57.180 34.615 11.35 0.00 45.36 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.