Multiple sequence alignment - TraesCS2B01G568600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G568600 chr2B 100.000 5212 0 0 1 5212 759438105 759443316 0.000000e+00 9625.0
1 TraesCS2B01G568600 chr2B 86.013 3682 380 73 606 4245 759344516 759348104 0.000000e+00 3821.0
2 TraesCS2B01G568600 chr2B 82.632 2044 275 49 2288 4303 706732023 706730032 0.000000e+00 1735.0
3 TraesCS2B01G568600 chr2B 81.873 2146 297 57 2310 4414 706923939 706921845 0.000000e+00 1724.0
4 TraesCS2B01G568600 chr2B 92.268 194 14 1 5019 5212 759446412 759446604 1.850000e-69 274.0
5 TraesCS2B01G568600 chr2B 90.066 151 14 1 416 566 759344292 759344441 1.480000e-45 195.0
6 TraesCS2B01G568600 chr2B 82.659 173 22 7 2318 2485 759440581 759440750 4.210000e-31 147.0
7 TraesCS2B01G568600 chr2A 92.926 4227 189 51 284 4482 751236163 751240307 0.000000e+00 6048.0
8 TraesCS2B01G568600 chr2A 95.531 3468 139 13 1026 4482 751267231 751270693 0.000000e+00 5531.0
9 TraesCS2B01G568600 chr2A 87.776 3354 342 40 930 4251 751207375 751210692 0.000000e+00 3860.0
10 TraesCS2B01G568600 chr2A 95.509 1514 64 4 1026 2536 751288156 751289668 0.000000e+00 2416.0
11 TraesCS2B01G568600 chr2A 86.544 1962 213 35 2542 4479 751233178 751235112 0.000000e+00 2113.0
12 TraesCS2B01G568600 chr2A 81.894 2154 290 62 2305 4415 719730712 719728616 0.000000e+00 1725.0
13 TraesCS2B01G568600 chr2A 85.236 1524 193 16 967 2470 751231640 751233151 0.000000e+00 1539.0
14 TraesCS2B01G568600 chr2A 91.951 733 50 2 4480 5212 751240496 751241219 0.000000e+00 1018.0
15 TraesCS2B01G568600 chr2A 90.792 467 35 2 4746 5212 751271340 751271798 7.420000e-173 617.0
16 TraesCS2B01G568600 chr2A 93.950 281 16 1 4480 4760 751270882 751271161 1.740000e-114 424.0
17 TraesCS2B01G568600 chr2A 87.437 199 16 8 87 284 751225517 751225707 2.440000e-53 220.0
18 TraesCS2B01G568600 chr2A 86.486 185 25 0 326 510 751225718 751225902 2.460000e-48 204.0
19 TraesCS2B01G568600 chr2A 88.235 102 12 0 5089 5190 751379777 751379878 7.090000e-24 122.0
20 TraesCS2B01G568600 chr2A 89.189 74 7 1 5021 5094 751374144 751374216 2.000000e-14 91.6
21 TraesCS2B01G568600 chr2D 95.535 3763 146 14 733 4482 619700666 619704419 0.000000e+00 5999.0
22 TraesCS2B01G568600 chr2D 89.563 1763 153 21 2505 4251 619664417 619666164 0.000000e+00 2207.0
23 TraesCS2B01G568600 chr2D 82.581 1906 247 50 2539 4414 585687813 585685963 0.000000e+00 1602.0
24 TraesCS2B01G568600 chr2D 85.575 1331 178 8 1126 2450 619663094 619664416 0.000000e+00 1382.0
25 TraesCS2B01G568600 chr2D 92.109 735 49 3 4479 5212 619704453 619705179 0.000000e+00 1027.0
26 TraesCS2B01G568600 chr2D 86.916 535 39 15 180 699 619700149 619700667 5.860000e-159 571.0
27 TraesCS2B01G568600 chr2D 92.268 194 15 0 5019 5212 619707639 619707832 5.140000e-70 276.0
28 TraesCS2B01G568600 chr2D 92.157 153 12 0 416 568 619626775 619626927 3.160000e-52 217.0
29 TraesCS2B01G568600 chr2D 97.436 39 1 0 4430 4468 619666183 619666221 3.370000e-07 67.6
30 TraesCS2B01G568600 chrUn 95.509 1514 64 4 1026 2536 337511529 337513041 0.000000e+00 2416.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G568600 chr2B 759438105 759443316 5211 False 4886.000000 9625 91.329500 1 5212 2 chr2B.!!$F3 5211
1 TraesCS2B01G568600 chr2B 759344292 759348104 3812 False 2008.000000 3821 88.039500 416 4245 2 chr2B.!!$F2 3829
2 TraesCS2B01G568600 chr2B 706730032 706732023 1991 True 1735.000000 1735 82.632000 2288 4303 1 chr2B.!!$R1 2015
3 TraesCS2B01G568600 chr2B 706921845 706923939 2094 True 1724.000000 1724 81.873000 2310 4414 1 chr2B.!!$R2 2104
4 TraesCS2B01G568600 chr2A 751207375 751210692 3317 False 3860.000000 3860 87.776000 930 4251 1 chr2A.!!$F1 3321
5 TraesCS2B01G568600 chr2A 751231640 751241219 9579 False 2679.500000 6048 89.164250 284 5212 4 chr2A.!!$F6 4928
6 TraesCS2B01G568600 chr2A 751288156 751289668 1512 False 2416.000000 2416 95.509000 1026 2536 1 chr2A.!!$F2 1510
7 TraesCS2B01G568600 chr2A 751267231 751271798 4567 False 2190.666667 5531 93.424333 1026 5212 3 chr2A.!!$F7 4186
8 TraesCS2B01G568600 chr2A 719728616 719730712 2096 True 1725.000000 1725 81.894000 2305 4415 1 chr2A.!!$R1 2110
9 TraesCS2B01G568600 chr2D 619700149 619707832 7683 False 1968.250000 5999 91.707000 180 5212 4 chr2D.!!$F3 5032
10 TraesCS2B01G568600 chr2D 585685963 585687813 1850 True 1602.000000 1602 82.581000 2539 4414 1 chr2D.!!$R1 1875
11 TraesCS2B01G568600 chr2D 619663094 619666221 3127 False 1218.866667 2207 90.858000 1126 4468 3 chr2D.!!$F2 3342
12 TraesCS2B01G568600 chrUn 337511529 337513041 1512 False 2416.000000 2416 95.509000 1026 2536 1 chrUn.!!$F1 1510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 254 0.107165 GCCGCTTTATCTTGGTCCCT 60.107 55.0 0.00 0.0 0.00 4.20 F
1939 6314 0.109342 CTGCCTCAGTGGGTTTGAGT 59.891 55.0 2.05 0.0 40.32 3.41 F
1970 6345 0.471211 AACTTCTCCCGAGGGTGTCA 60.471 55.0 8.20 0.0 36.47 3.58 F
2413 6951 0.543277 AGCATCATTCTCTTGCGGGA 59.457 50.0 0.00 0.0 41.22 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1970 6345 1.078656 ACCTCAGCTCCTCCTTTCTCT 59.921 52.381 0.00 0.00 0.00 3.10 R
2775 7332 1.849829 CGTCGTTTTCCTGCCAAAAAC 59.150 47.619 7.85 7.85 41.18 2.43 R
3091 7661 2.616510 CCCTTGCCCAGAACTCTTACTG 60.617 54.545 0.00 0.00 0.00 2.74 R
4391 8983 1.902508 CAGGTAGCCTCTCCACTTGAA 59.097 52.381 0.00 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 9.535878 AAAAGGCGTATAAAATTGAAAAACAGA 57.464 25.926 0.00 0.00 0.00 3.41
104 105 9.535878 AAAGGCGTATAAAATTGAAAAACAGAA 57.464 25.926 0.00 0.00 0.00 3.02
105 106 9.535878 AAGGCGTATAAAATTGAAAAACAGAAA 57.464 25.926 0.00 0.00 0.00 2.52
106 107 9.535878 AGGCGTATAAAATTGAAAAACAGAAAA 57.464 25.926 0.00 0.00 0.00 2.29
113 114 8.565896 AAAATTGAAAAACAGAAAAAGAGGCT 57.434 26.923 0.00 0.00 0.00 4.58
115 116 5.659440 TGAAAAACAGAAAAAGAGGCTGT 57.341 34.783 0.00 0.00 44.15 4.40
121 122 3.394606 ACAGAAAAAGAGGCTGTTCCCTA 59.605 43.478 0.00 0.00 39.69 3.53
122 123 4.043435 ACAGAAAAAGAGGCTGTTCCCTAT 59.957 41.667 0.00 0.00 39.69 2.57
123 124 4.397417 CAGAAAAAGAGGCTGTTCCCTATG 59.603 45.833 0.00 0.00 34.69 2.23
125 126 0.548510 AAGAGGCTGTTCCCTATGGC 59.451 55.000 0.00 0.00 34.69 4.40
127 128 1.308216 AGGCTGTTCCCTATGGCCT 60.308 57.895 3.32 0.00 46.95 5.19
128 129 1.149401 GGCTGTTCCCTATGGCCTC 59.851 63.158 3.32 0.00 39.68 4.70
130 131 1.839894 CTGTTCCCTATGGCCTCCC 59.160 63.158 3.32 0.00 0.00 4.30
131 132 2.044806 CTGTTCCCTATGGCCTCCCG 62.045 65.000 3.32 0.00 0.00 5.14
132 133 2.070650 GTTCCCTATGGCCTCCCGT 61.071 63.158 3.32 0.00 0.00 5.28
133 134 2.070039 TTCCCTATGGCCTCCCGTG 61.070 63.158 3.32 0.00 0.00 4.94
134 135 4.256180 CCCTATGGCCTCCCGTGC 62.256 72.222 3.32 0.00 0.00 5.34
135 136 4.609018 CCTATGGCCTCCCGTGCG 62.609 72.222 3.32 0.00 0.00 5.34
158 159 3.691342 CCGTCCCAGTCTCGCCAA 61.691 66.667 0.00 0.00 0.00 4.52
160 161 1.672854 CCGTCCCAGTCTCGCCAATA 61.673 60.000 0.00 0.00 0.00 1.90
161 162 0.174845 CGTCCCAGTCTCGCCAATAA 59.825 55.000 0.00 0.00 0.00 1.40
162 163 1.802880 CGTCCCAGTCTCGCCAATAAG 60.803 57.143 0.00 0.00 0.00 1.73
163 164 0.178068 TCCCAGTCTCGCCAATAAGC 59.822 55.000 0.00 0.00 0.00 3.09
176 177 2.472861 CCAATAAGCGAGACACATAGCG 59.527 50.000 0.00 0.00 34.34 4.26
215 216 4.530325 GTTACCGCCGCGCAATGG 62.530 66.667 8.75 7.83 0.00 3.16
253 254 0.107165 GCCGCTTTATCTTGGTCCCT 60.107 55.000 0.00 0.00 0.00 4.20
284 285 3.941188 CCATAGCATCCGGCCGGT 61.941 66.667 41.57 26.88 46.50 5.28
285 286 2.357517 CATAGCATCCGGCCGGTC 60.358 66.667 41.57 29.82 46.50 4.79
298 4539 3.518998 CGGTCGCGGTCATCCTCT 61.519 66.667 6.13 0.00 0.00 3.69
571 4825 6.915349 CAGTAAGACTACTGCTTGTACTTCT 58.085 40.000 0.00 0.00 46.46 2.85
572 4826 7.024768 CAGTAAGACTACTGCTTGTACTTCTC 58.975 42.308 0.00 0.00 46.46 2.87
573 4827 6.715718 AGTAAGACTACTGCTTGTACTTCTCA 59.284 38.462 0.00 0.00 36.98 3.27
574 4828 6.597832 AAGACTACTGCTTGTACTTCTCAT 57.402 37.500 0.00 0.00 0.00 2.90
575 4829 7.704578 AAGACTACTGCTTGTACTTCTCATA 57.295 36.000 0.00 0.00 0.00 2.15
576 4830 7.889873 AGACTACTGCTTGTACTTCTCATAT 57.110 36.000 0.00 0.00 0.00 1.78
577 4831 7.711846 AGACTACTGCTTGTACTTCTCATATG 58.288 38.462 0.00 0.00 0.00 1.78
578 4832 7.340743 AGACTACTGCTTGTACTTCTCATATGT 59.659 37.037 1.90 0.00 0.00 2.29
579 4833 7.261325 ACTACTGCTTGTACTTCTCATATGTG 58.739 38.462 1.90 0.00 0.00 3.21
580 4834 6.042638 ACTGCTTGTACTTCTCATATGTGT 57.957 37.500 1.90 1.33 0.00 3.72
581 4835 6.102663 ACTGCTTGTACTTCTCATATGTGTC 58.897 40.000 1.90 0.00 0.00 3.67
669 4990 0.326927 TGAAATTCCCCACGGAGACC 59.673 55.000 0.00 0.00 40.10 3.85
670 4991 0.326927 GAAATTCCCCACGGAGACCA 59.673 55.000 0.00 0.00 40.10 4.02
671 4992 0.328258 AAATTCCCCACGGAGACCAG 59.672 55.000 0.00 0.00 40.10 4.00
672 4993 0.546747 AATTCCCCACGGAGACCAGA 60.547 55.000 0.00 0.00 40.10 3.86
673 4994 0.978146 ATTCCCCACGGAGACCAGAG 60.978 60.000 0.00 0.00 40.10 3.35
702 5052 5.995055 GCCAATGCTGAATAATACTCAGTC 58.005 41.667 0.60 0.00 42.01 3.51
703 5053 5.762218 GCCAATGCTGAATAATACTCAGTCT 59.238 40.000 0.60 0.00 42.01 3.24
704 5054 6.261826 GCCAATGCTGAATAATACTCAGTCTT 59.738 38.462 0.60 0.00 42.01 3.01
706 5056 7.255035 CCAATGCTGAATAATACTCAGTCTTGG 60.255 40.741 14.86 14.86 42.04 3.61
707 5057 5.118990 TGCTGAATAATACTCAGTCTTGGC 58.881 41.667 0.60 0.00 42.01 4.52
708 5058 4.513318 GCTGAATAATACTCAGTCTTGGCC 59.487 45.833 0.00 0.00 42.01 5.36
709 5059 5.686124 GCTGAATAATACTCAGTCTTGGCCT 60.686 44.000 3.32 0.00 42.01 5.19
710 5060 6.313519 TGAATAATACTCAGTCTTGGCCTT 57.686 37.500 3.32 0.00 0.00 4.35
711 5061 6.115446 TGAATAATACTCAGTCTTGGCCTTG 58.885 40.000 3.32 0.00 0.00 3.61
712 5062 2.409948 ATACTCAGTCTTGGCCTTGC 57.590 50.000 3.32 0.00 0.00 4.01
713 5063 1.055849 TACTCAGTCTTGGCCTTGCA 58.944 50.000 3.32 0.00 0.00 4.08
714 5064 0.536006 ACTCAGTCTTGGCCTTGCAC 60.536 55.000 3.32 0.00 0.00 4.57
715 5065 1.228245 TCAGTCTTGGCCTTGCACC 60.228 57.895 3.32 0.00 0.00 5.01
716 5066 1.228367 CAGTCTTGGCCTTGCACCT 60.228 57.895 3.32 0.00 0.00 4.00
717 5067 1.073897 AGTCTTGGCCTTGCACCTC 59.926 57.895 3.32 0.00 0.00 3.85
718 5068 1.228245 GTCTTGGCCTTGCACCTCA 60.228 57.895 3.32 0.00 0.00 3.86
719 5069 0.610232 GTCTTGGCCTTGCACCTCAT 60.610 55.000 3.32 0.00 0.00 2.90
720 5070 0.322816 TCTTGGCCTTGCACCTCATC 60.323 55.000 3.32 0.00 0.00 2.92
721 5071 0.323178 CTTGGCCTTGCACCTCATCT 60.323 55.000 3.32 0.00 0.00 2.90
722 5072 0.112995 TTGGCCTTGCACCTCATCTT 59.887 50.000 3.32 0.00 0.00 2.40
723 5073 0.991146 TGGCCTTGCACCTCATCTTA 59.009 50.000 3.32 0.00 0.00 2.10
724 5074 1.565759 TGGCCTTGCACCTCATCTTAT 59.434 47.619 3.32 0.00 0.00 1.73
725 5075 2.025037 TGGCCTTGCACCTCATCTTATT 60.025 45.455 3.32 0.00 0.00 1.40
726 5076 2.360165 GGCCTTGCACCTCATCTTATTG 59.640 50.000 0.00 0.00 0.00 1.90
727 5077 3.019564 GCCTTGCACCTCATCTTATTGT 58.980 45.455 0.00 0.00 0.00 2.71
728 5078 3.181493 GCCTTGCACCTCATCTTATTGTG 60.181 47.826 0.00 0.00 0.00 3.33
729 5079 4.012374 CCTTGCACCTCATCTTATTGTGT 58.988 43.478 0.00 0.00 0.00 3.72
730 5080 4.142534 CCTTGCACCTCATCTTATTGTGTG 60.143 45.833 0.00 0.00 0.00 3.82
731 5081 3.346315 TGCACCTCATCTTATTGTGTGG 58.654 45.455 0.00 0.00 35.63 4.17
732 5082 3.244875 TGCACCTCATCTTATTGTGTGGT 60.245 43.478 0.00 0.00 41.46 4.16
733 5083 3.375299 GCACCTCATCTTATTGTGTGGTC 59.625 47.826 0.00 0.00 39.46 4.02
757 5107 0.947180 AATCACCAACGTTCCGGTCG 60.947 55.000 17.02 17.02 31.41 4.79
768 5118 3.521605 CCGGTCGAGCTGGACATA 58.478 61.111 27.22 0.00 46.81 2.29
839 5202 0.734889 CATAGCAGCGTTCCCCTTTG 59.265 55.000 0.00 0.00 0.00 2.77
840 5203 0.328258 ATAGCAGCGTTCCCCTTTGT 59.672 50.000 0.00 0.00 0.00 2.83
842 5205 1.172812 AGCAGCGTTCCCCTTTGTTC 61.173 55.000 0.00 0.00 0.00 3.18
844 5207 0.821711 CAGCGTTCCCCTTTGTTCCA 60.822 55.000 0.00 0.00 0.00 3.53
847 5210 1.067846 GCGTTCCCCTTTGTTCCATTC 60.068 52.381 0.00 0.00 0.00 2.67
848 5211 2.235016 CGTTCCCCTTTGTTCCATTCA 58.765 47.619 0.00 0.00 0.00 2.57
849 5212 2.625790 CGTTCCCCTTTGTTCCATTCAA 59.374 45.455 0.00 0.00 0.00 2.69
850 5213 3.552068 CGTTCCCCTTTGTTCCATTCAAC 60.552 47.826 0.00 0.00 0.00 3.18
851 5214 3.611025 TCCCCTTTGTTCCATTCAACT 57.389 42.857 0.00 0.00 0.00 3.16
852 5215 3.922375 TCCCCTTTGTTCCATTCAACTT 58.078 40.909 0.00 0.00 0.00 2.66
853 5216 3.895041 TCCCCTTTGTTCCATTCAACTTC 59.105 43.478 0.00 0.00 0.00 3.01
854 5217 3.640967 CCCCTTTGTTCCATTCAACTTCA 59.359 43.478 0.00 0.00 0.00 3.02
855 5218 4.284234 CCCCTTTGTTCCATTCAACTTCAT 59.716 41.667 0.00 0.00 0.00 2.57
858 5221 3.940209 TGTTCCATTCAACTTCATGCC 57.060 42.857 0.00 0.00 0.00 4.40
861 5224 4.178540 GTTCCATTCAACTTCATGCCATG 58.821 43.478 0.00 0.00 0.00 3.66
891 5254 2.096248 GGGCCGACCAAACAATCAATA 58.904 47.619 0.00 0.00 39.85 1.90
995 5366 4.754114 GGCATATGTGAGAGAATCCTGAAC 59.246 45.833 4.29 0.00 33.66 3.18
1019 5390 0.831288 ATGGCTCCTCATCCTCTCCG 60.831 60.000 0.00 0.00 0.00 4.63
1044 5415 3.190874 GTTCGTCCTCCTGTCATTGATC 58.809 50.000 0.00 0.00 0.00 2.92
1205 5576 0.687920 TACAACGACATCCCCAAGCA 59.312 50.000 0.00 0.00 0.00 3.91
1306 5677 1.248486 CCTCGTCTTGTCTGACTCCA 58.752 55.000 9.51 0.00 35.00 3.86
1313 5684 1.072965 CTTGTCTGACTCCAAAGGCCT 59.927 52.381 0.00 0.00 0.00 5.19
1316 5687 0.832135 TCTGACTCCAAAGGCCTCGT 60.832 55.000 5.23 0.00 0.00 4.18
1797 6172 2.883386 GGGCATGTTTCAATTTTTGGCA 59.117 40.909 0.00 0.00 0.00 4.92
1826 6201 2.030185 GCACCTCATCATCATGGAATGC 60.030 50.000 0.00 0.00 46.21 3.56
1919 6294 3.003689 ACTGAAACAGTTCCGAAATGCAG 59.996 43.478 8.45 9.96 42.59 4.41
1939 6314 0.109342 CTGCCTCAGTGGGTTTGAGT 59.891 55.000 2.05 0.00 40.32 3.41
1970 6345 0.471211 AACTTCTCCCGAGGGTGTCA 60.471 55.000 8.20 0.00 36.47 3.58
1988 6363 2.166254 GTCAGAGAAAGGAGGAGCTGAG 59.834 54.545 0.00 0.00 33.55 3.35
1989 6364 1.481772 CAGAGAAAGGAGGAGCTGAGG 59.518 57.143 0.00 0.00 0.00 3.86
1996 6371 0.614979 GGAGGAGCTGAGGTGTGGTA 60.615 60.000 0.00 0.00 0.00 3.25
2053 6428 8.590204 TGAAGACACCTGATAAGTTTGTGTATA 58.410 33.333 0.00 0.00 40.04 1.47
2289 6664 5.470098 TCTTTCCTTATGCGCTTATGGATTC 59.530 40.000 27.76 0.00 0.00 2.52
2352 6890 8.713971 TGTGGTTTAGGATGACATACTAATCAT 58.286 33.333 18.85 0.00 35.68 2.45
2366 6904 9.897744 ACATACTAATCATGAAAAACACAACAG 57.102 29.630 0.00 0.00 0.00 3.16
2396 6934 9.109533 CAAGAAATGCATGTAAATTTTGAAAGC 57.890 29.630 0.00 0.00 0.00 3.51
2397 6935 8.380743 AGAAATGCATGTAAATTTTGAAAGCA 57.619 26.923 0.00 1.88 0.00 3.91
2398 6936 9.005777 AGAAATGCATGTAAATTTTGAAAGCAT 57.994 25.926 0.00 4.21 41.43 3.79
2399 6937 9.269415 GAAATGCATGTAAATTTTGAAAGCATC 57.731 29.630 0.00 5.06 39.04 3.91
2400 6938 7.908827 ATGCATGTAAATTTTGAAAGCATCA 57.091 28.000 0.00 0.00 35.50 3.07
2401 6939 7.908827 TGCATGTAAATTTTGAAAGCATCAT 57.091 28.000 0.00 0.00 38.03 2.45
2404 6942 8.662141 GCATGTAAATTTTGAAAGCATCATTCT 58.338 29.630 0.00 0.00 38.03 2.40
2409 6947 6.963049 ATTTTGAAAGCATCATTCTCTTGC 57.037 33.333 0.00 0.00 38.03 4.01
2410 6948 3.752412 TGAAAGCATCATTCTCTTGCG 57.248 42.857 0.00 0.00 41.22 4.85
2411 6949 2.421073 TGAAAGCATCATTCTCTTGCGG 59.579 45.455 0.00 0.00 41.22 5.69
2413 6951 0.543277 AGCATCATTCTCTTGCGGGA 59.457 50.000 0.00 0.00 41.22 5.14
2414 6952 0.659957 GCATCATTCTCTTGCGGGAC 59.340 55.000 0.00 0.00 0.00 4.46
2416 6954 2.483714 GCATCATTCTCTTGCGGGACTA 60.484 50.000 0.00 0.00 0.00 2.59
2417 6955 3.805108 GCATCATTCTCTTGCGGGACTAT 60.805 47.826 0.00 0.00 0.00 2.12
2418 6956 4.561530 GCATCATTCTCTTGCGGGACTATA 60.562 45.833 0.00 0.00 0.00 1.31
2419 6957 5.728471 CATCATTCTCTTGCGGGACTATAT 58.272 41.667 0.00 0.00 0.00 0.86
2422 6960 6.223852 TCATTCTCTTGCGGGACTATATTTC 58.776 40.000 0.00 0.00 0.00 2.17
2424 6962 5.201713 TCTCTTGCGGGACTATATTTCTG 57.798 43.478 0.00 0.00 0.00 3.02
2425 6963 3.728845 TCTTGCGGGACTATATTTCTGC 58.271 45.455 0.00 0.00 0.00 4.26
2427 6965 2.047061 TGCGGGACTATATTTCTGCCT 58.953 47.619 0.00 0.00 0.00 4.75
2430 6968 3.498777 GCGGGACTATATTTCTGCCTTTC 59.501 47.826 0.00 0.00 0.00 2.62
2431 6969 4.743955 GCGGGACTATATTTCTGCCTTTCT 60.744 45.833 0.00 0.00 0.00 2.52
2432 6970 4.752101 CGGGACTATATTTCTGCCTTTCTG 59.248 45.833 0.00 0.00 0.00 3.02
2433 6971 4.517075 GGGACTATATTTCTGCCTTTCTGC 59.483 45.833 0.00 0.00 0.00 4.26
2434 6972 5.126067 GGACTATATTTCTGCCTTTCTGCA 58.874 41.667 0.00 0.00 39.37 4.41
2444 6982 2.358898 TGCCTTTCTGCAGTTGAGAAAC 59.641 45.455 14.67 4.55 35.07 2.78
2445 6983 2.358898 GCCTTTCTGCAGTTGAGAAACA 59.641 45.455 14.67 0.00 35.07 2.83
2446 6984 3.549625 GCCTTTCTGCAGTTGAGAAACAG 60.550 47.826 14.67 0.67 35.07 3.16
2447 6985 3.879295 CCTTTCTGCAGTTGAGAAACAGA 59.121 43.478 14.67 0.00 35.07 3.41
2448 6986 4.024218 CCTTTCTGCAGTTGAGAAACAGAG 60.024 45.833 14.67 0.00 38.51 3.35
2449 6987 3.827008 TCTGCAGTTGAGAAACAGAGT 57.173 42.857 14.67 0.00 32.65 3.24
2450 6988 4.937201 TCTGCAGTTGAGAAACAGAGTA 57.063 40.909 14.67 0.00 32.65 2.59
2452 6990 5.858381 TCTGCAGTTGAGAAACAGAGTAAT 58.142 37.500 14.67 0.00 32.65 1.89
2453 6991 5.698089 TCTGCAGTTGAGAAACAGAGTAATG 59.302 40.000 14.67 0.00 32.65 1.90
2454 6992 5.368145 TGCAGTTGAGAAACAGAGTAATGT 58.632 37.500 0.00 0.00 33.96 2.71
2455 6993 6.521162 TGCAGTTGAGAAACAGAGTAATGTA 58.479 36.000 0.00 0.00 31.70 2.29
2456 6994 7.161404 TGCAGTTGAGAAACAGAGTAATGTAT 58.839 34.615 0.00 0.00 31.70 2.29
2458 6996 7.959651 GCAGTTGAGAAACAGAGTAATGTATTG 59.040 37.037 0.00 0.00 31.70 1.90
2459 6997 9.208022 CAGTTGAGAAACAGAGTAATGTATTGA 57.792 33.333 0.00 0.00 31.70 2.57
2460 6998 9.429359 AGTTGAGAAACAGAGTAATGTATTGAG 57.571 33.333 0.00 0.00 31.70 3.02
2461 6999 8.660373 GTTGAGAAACAGAGTAATGTATTGAGG 58.340 37.037 0.00 0.00 31.70 3.86
2462 7000 8.134202 TGAGAAACAGAGTAATGTATTGAGGA 57.866 34.615 0.00 0.00 31.70 3.71
2463 7001 8.762645 TGAGAAACAGAGTAATGTATTGAGGAT 58.237 33.333 0.00 0.00 31.70 3.24
2465 7003 9.388506 AGAAACAGAGTAATGTATTGAGGATTG 57.611 33.333 0.00 0.00 31.70 2.67
2466 7004 9.167311 GAAACAGAGTAATGTATTGAGGATTGT 57.833 33.333 0.00 0.00 31.70 2.71
2468 7006 9.601217 AACAGAGTAATGTATTGAGGATTGTAC 57.399 33.333 0.00 0.00 31.70 2.90
2469 7007 8.982723 ACAGAGTAATGTATTGAGGATTGTACT 58.017 33.333 0.00 0.00 0.00 2.73
2470 7008 9.469807 CAGAGTAATGTATTGAGGATTGTACTC 57.530 37.037 0.00 0.00 36.68 2.59
2473 7011 6.575244 AATGTATTGAGGATTGTACTCCCA 57.425 37.500 0.00 0.00 35.79 4.37
2474 7012 5.614324 TGTATTGAGGATTGTACTCCCAG 57.386 43.478 0.00 0.00 35.79 4.45
2475 7013 5.277250 TGTATTGAGGATTGTACTCCCAGA 58.723 41.667 0.00 0.00 35.79 3.86
2478 7016 5.779241 TTGAGGATTGTACTCCCAGAAAT 57.221 39.130 0.00 0.00 35.79 2.17
2479 7017 5.102953 TGAGGATTGTACTCCCAGAAATG 57.897 43.478 0.00 0.00 35.79 2.32
2481 7019 2.952310 GGATTGTACTCCCAGAAATGGC 59.048 50.000 0.00 0.00 0.00 4.40
2482 7020 3.372025 GGATTGTACTCCCAGAAATGGCT 60.372 47.826 0.00 0.00 0.00 4.75
2483 7021 4.141482 GGATTGTACTCCCAGAAATGGCTA 60.141 45.833 0.00 0.00 0.00 3.93
2484 7022 4.487714 TTGTACTCCCAGAAATGGCTAG 57.512 45.455 0.00 0.00 0.00 3.42
2486 7024 4.298626 TGTACTCCCAGAAATGGCTAGAT 58.701 43.478 0.00 0.00 0.00 1.98
2487 7025 3.853355 ACTCCCAGAAATGGCTAGATG 57.147 47.619 0.00 0.00 0.00 2.90
2488 7026 2.158696 ACTCCCAGAAATGGCTAGATGC 60.159 50.000 0.00 0.00 41.94 3.91
2490 7028 2.158711 TCCCAGAAATGGCTAGATGCAG 60.159 50.000 0.00 0.00 45.15 4.41
2491 7029 2.422519 CCCAGAAATGGCTAGATGCAGT 60.423 50.000 0.00 0.00 45.15 4.40
2492 7030 3.285484 CCAGAAATGGCTAGATGCAGTT 58.715 45.455 0.00 0.00 45.15 3.16
2493 7031 4.454678 CCAGAAATGGCTAGATGCAGTTA 58.545 43.478 0.00 0.00 45.15 2.24
2494 7032 4.514441 CCAGAAATGGCTAGATGCAGTTAG 59.486 45.833 0.00 0.00 45.15 2.34
2495 7033 4.514441 CAGAAATGGCTAGATGCAGTTAGG 59.486 45.833 0.00 0.00 45.15 2.69
2496 7034 4.410228 AGAAATGGCTAGATGCAGTTAGGA 59.590 41.667 0.00 0.00 45.15 2.94
2497 7035 4.989875 AATGGCTAGATGCAGTTAGGAT 57.010 40.909 0.00 0.00 45.15 3.24
2498 7036 3.758755 TGGCTAGATGCAGTTAGGATG 57.241 47.619 0.00 0.00 45.15 3.51
2500 7038 3.070159 TGGCTAGATGCAGTTAGGATGAC 59.930 47.826 0.00 0.00 45.15 3.06
2504 7042 5.866633 GCTAGATGCAGTTAGGATGACATAC 59.133 44.000 0.00 0.00 42.31 2.39
2506 7044 7.094162 GCTAGATGCAGTTAGGATGACATACTA 60.094 40.741 3.02 3.02 42.31 1.82
2507 7045 7.603180 AGATGCAGTTAGGATGACATACTAA 57.397 36.000 15.04 15.04 33.34 2.24
2508 7046 8.200024 AGATGCAGTTAGGATGACATACTAAT 57.800 34.615 20.64 6.77 37.95 1.73
2510 7048 7.360113 TGCAGTTAGGATGACATACTAATCA 57.640 36.000 20.64 15.83 37.95 2.57
2511 7049 7.966812 TGCAGTTAGGATGACATACTAATCAT 58.033 34.615 20.64 9.39 37.95 2.45
2512 7050 7.874528 TGCAGTTAGGATGACATACTAATCATG 59.125 37.037 20.64 18.88 37.95 3.07
2513 7051 8.090831 GCAGTTAGGATGACATACTAATCATGA 58.909 37.037 20.64 0.00 37.95 3.07
2514 7052 9.987272 CAGTTAGGATGACATACTAATCATGAA 57.013 33.333 20.64 0.00 37.95 2.57
2578 7130 4.450419 CGCATGATTCTCTTCCTGGATTAC 59.550 45.833 0.00 0.00 0.00 1.89
2634 7186 1.197721 GTGTTGAAGATTGCACTCCCG 59.802 52.381 0.00 0.00 0.00 5.14
3091 7661 4.882671 TGAAGTTGCTGTCAAAAGACTC 57.117 40.909 0.00 0.00 33.37 3.36
3780 8355 2.301870 ACTGTTGGAGATTGTAAGCGGA 59.698 45.455 0.00 0.00 0.00 5.54
3783 8358 3.689161 TGTTGGAGATTGTAAGCGGATTG 59.311 43.478 0.00 0.00 0.00 2.67
3956 8532 2.106338 TGCAAGAGAATTGGTGGACTCA 59.894 45.455 0.00 0.00 32.59 3.41
4064 8640 3.195610 GTCCACTCATGTCATCCACTGTA 59.804 47.826 0.00 0.00 0.00 2.74
4208 8790 3.056313 GACAATGCAAGAGGGGCGC 62.056 63.158 0.00 0.00 0.00 6.53
4227 8809 5.034797 GGCGCTAAATGTTTAGTTCCATTC 58.965 41.667 7.64 0.00 41.63 2.67
4292 8874 8.734386 AGAAATTCAGTGATTCATGTTCTTACC 58.266 33.333 8.75 0.00 0.00 2.85
4338 8930 6.939132 AATCCTCTCTGTGCTATTTTCATG 57.061 37.500 0.00 0.00 0.00 3.07
4343 8935 3.935203 CTCTGTGCTATTTTCATGGACGT 59.065 43.478 0.00 0.00 0.00 4.34
4347 8939 5.837437 TGTGCTATTTTCATGGACGTTTTT 58.163 33.333 0.00 0.00 0.00 1.94
4350 8942 5.918011 TGCTATTTTCATGGACGTTTTTGAC 59.082 36.000 0.00 0.00 0.00 3.18
4371 8963 6.272318 TGACATTTTGTGAACTTCAATGGTC 58.728 36.000 0.00 0.00 0.00 4.02
4375 8967 5.913137 TTTGTGAACTTCAATGGTCTGTT 57.087 34.783 0.00 0.00 0.00 3.16
4391 8983 7.176589 TGGTCTGTTATTTGTTTTCACCTTT 57.823 32.000 0.00 0.00 0.00 3.11
4417 9010 3.031736 GTGGAGAGGCTACCTGATTACA 58.968 50.000 10.74 0.00 31.76 2.41
4468 9214 2.062636 TCCCAGCTTCCTTGGTTAGTT 58.937 47.619 0.00 0.00 33.73 2.24
4471 9217 4.010349 CCCAGCTTCCTTGGTTAGTTAAG 58.990 47.826 0.00 0.00 33.73 1.85
4482 9228 3.335484 TGGTTAGTTAAGGGGCCTGAAAT 59.665 43.478 0.84 0.00 0.00 2.17
4485 9231 3.101643 AGTTAAGGGGCCTGAAATTCC 57.898 47.619 0.84 0.00 0.00 3.01
4486 9232 2.381961 AGTTAAGGGGCCTGAAATTCCA 59.618 45.455 0.84 0.00 0.00 3.53
4527 9310 3.608796 TGCAGTGCATCTTGCTATGTAA 58.391 40.909 15.37 0.00 45.31 2.41
4557 9340 0.179089 ATCTTCTGCTGCTAGTGGCG 60.179 55.000 0.00 0.00 45.43 5.69
4577 9360 3.298317 CGAGTAAGCTAGGATTACACGC 58.702 50.000 10.98 0.00 39.23 5.34
4590 9373 0.319211 TACACGCCCAAAGTCTGACG 60.319 55.000 1.52 0.00 0.00 4.35
4591 9374 1.300620 CACGCCCAAAGTCTGACGA 60.301 57.895 1.52 0.00 0.00 4.20
4603 9386 5.852738 AAGTCTGACGATGATCTTTTGTG 57.147 39.130 1.52 0.00 0.00 3.33
4615 9399 6.441093 TGATCTTTTGTGTATTCAGATGGC 57.559 37.500 0.00 0.00 0.00 4.40
4644 9428 5.106673 CCGAAACTTCAGGTATGGAAAACTC 60.107 44.000 0.00 0.00 0.00 3.01
4808 9785 2.396590 TCCAGAATGCGGTTTAGGAC 57.603 50.000 0.00 0.00 31.97 3.85
4810 9787 2.238646 TCCAGAATGCGGTTTAGGACAT 59.761 45.455 0.00 0.00 31.97 3.06
4822 9799 6.204882 GCGGTTTAGGACATTCAGCTAATATT 59.795 38.462 0.00 0.00 0.00 1.28
4860 9837 5.368145 TCAACATCGCTAGCCTAAATCATT 58.632 37.500 9.66 0.00 0.00 2.57
4880 9857 7.170393 TCATTTAGGATCATGTATACCTCCG 57.830 40.000 0.00 0.00 34.42 4.63
4882 9859 2.180276 AGGATCATGTATACCTCCGCC 58.820 52.381 0.00 0.00 0.00 6.13
4888 9865 3.827876 TCATGTATACCTCCGCCGAAATA 59.172 43.478 0.00 0.00 0.00 1.40
4927 9904 2.336554 ATTTAGCTGTTGCACTTGCG 57.663 45.000 0.00 0.00 45.83 4.85
4995 9972 7.337689 AGCAATAATCTTGAATTACACTCTGCA 59.662 33.333 0.00 0.00 0.00 4.41
4996 9973 7.430502 GCAATAATCTTGAATTACACTCTGCAC 59.569 37.037 0.00 0.00 0.00 4.57
4997 9974 8.453320 CAATAATCTTGAATTACACTCTGCACA 58.547 33.333 0.00 0.00 0.00 4.57
4998 9975 6.882610 AATCTTGAATTACACTCTGCACAA 57.117 33.333 0.00 0.00 0.00 3.33
4999 9976 5.929697 TCTTGAATTACACTCTGCACAAG 57.070 39.130 0.00 0.00 36.06 3.16
5000 9977 4.214119 TCTTGAATTACACTCTGCACAAGC 59.786 41.667 0.00 0.00 42.57 4.01
5001 9978 2.480037 TGAATTACACTCTGCACAAGCG 59.520 45.455 0.00 0.00 46.23 4.68
5002 9979 0.798776 ATTACACTCTGCACAAGCGC 59.201 50.000 0.00 0.00 46.23 5.92
5033 10010 6.922247 TTGTGATCGTGTGGTTACTTTTAA 57.078 33.333 0.00 0.00 0.00 1.52
5042 10019 6.199393 GTGTGGTTACTTTTAAGAGTGCTTG 58.801 40.000 8.85 0.00 35.56 4.01
5043 10020 5.212934 GTGGTTACTTTTAAGAGTGCTTGC 58.787 41.667 8.85 0.00 35.56 4.01
5052 10029 6.935741 TTTAAGAGTGCTTGCTAAAAGACA 57.064 33.333 0.00 0.00 35.56 3.41
5086 10063 8.918202 AGATAAAGGTGTTGAATTTCACTGTA 57.082 30.769 0.00 0.00 35.26 2.74
5092 10069 5.179555 GGTGTTGAATTTCACTGTAGGTCTC 59.820 44.000 0.00 0.00 35.26 3.36
5127 10104 0.380378 TGAACTTTGTCTTGCACGCC 59.620 50.000 0.00 0.00 0.00 5.68
5151 10128 2.163815 CTCCACGAGTTCGACCATTACT 59.836 50.000 8.72 0.00 43.02 2.24
5157 10134 4.456911 ACGAGTTCGACCATTACTCTAACA 59.543 41.667 8.72 0.00 43.02 2.41
5190 10167 1.470098 CTGCATGGTGGTAGCTTTCAC 59.530 52.381 9.74 9.74 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 9.535878 TCTGTTTTTCAATTTTATACGCCTTTT 57.464 25.926 0.00 0.00 0.00 2.27
78 79 9.535878 TTCTGTTTTTCAATTTTATACGCCTTT 57.464 25.926 0.00 0.00 0.00 3.11
79 80 9.535878 TTTCTGTTTTTCAATTTTATACGCCTT 57.464 25.926 0.00 0.00 0.00 4.35
80 81 9.535878 TTTTCTGTTTTTCAATTTTATACGCCT 57.464 25.926 0.00 0.00 0.00 5.52
88 89 8.453320 CAGCCTCTTTTTCTGTTTTTCAATTTT 58.547 29.630 0.00 0.00 0.00 1.82
90 91 7.105588 ACAGCCTCTTTTTCTGTTTTTCAATT 58.894 30.769 0.00 0.00 37.78 2.32
91 92 6.643388 ACAGCCTCTTTTTCTGTTTTTCAAT 58.357 32.000 0.00 0.00 37.78 2.57
92 93 6.036577 ACAGCCTCTTTTTCTGTTTTTCAA 57.963 33.333 0.00 0.00 37.78 2.69
93 94 5.659440 ACAGCCTCTTTTTCTGTTTTTCA 57.341 34.783 0.00 0.00 37.78 2.69
99 100 2.175715 AGGGAACAGCCTCTTTTTCTGT 59.824 45.455 0.00 0.00 42.28 3.41
100 101 2.868899 AGGGAACAGCCTCTTTTTCTG 58.131 47.619 0.00 0.00 36.66 3.02
101 102 4.568592 CCATAGGGAACAGCCTCTTTTTCT 60.569 45.833 0.00 0.00 35.59 2.52
102 103 3.696548 CCATAGGGAACAGCCTCTTTTTC 59.303 47.826 0.00 0.00 35.59 2.29
103 104 3.701664 CCATAGGGAACAGCCTCTTTTT 58.298 45.455 0.00 0.00 35.59 1.94
104 105 2.621668 GCCATAGGGAACAGCCTCTTTT 60.622 50.000 0.00 0.00 35.59 2.27
105 106 1.064389 GCCATAGGGAACAGCCTCTTT 60.064 52.381 0.00 0.00 35.59 2.52
106 107 0.548510 GCCATAGGGAACAGCCTCTT 59.451 55.000 0.00 0.00 35.59 2.85
107 108 1.348775 GGCCATAGGGAACAGCCTCT 61.349 60.000 0.00 0.00 40.57 3.69
108 109 1.149401 GGCCATAGGGAACAGCCTC 59.851 63.158 0.00 0.00 40.57 4.70
110 111 1.149401 GAGGCCATAGGGAACAGCC 59.851 63.158 5.01 0.00 44.20 4.85
113 114 2.070039 CGGGAGGCCATAGGGAACA 61.070 63.158 5.01 0.00 35.59 3.18
115 116 2.070039 CACGGGAGGCCATAGGGAA 61.070 63.158 5.01 0.00 35.59 3.97
118 119 4.609018 CGCACGGGAGGCCATAGG 62.609 72.222 5.01 0.00 0.00 2.57
141 142 1.672854 TATTGGCGAGACTGGGACGG 61.673 60.000 0.00 0.00 42.99 4.79
142 143 0.174845 TTATTGGCGAGACTGGGACG 59.825 55.000 0.00 0.00 0.00 4.79
144 145 0.178068 GCTTATTGGCGAGACTGGGA 59.822 55.000 0.00 0.00 0.00 4.37
145 146 2.695314 GCTTATTGGCGAGACTGGG 58.305 57.895 0.00 0.00 0.00 4.45
154 155 2.221981 GCTATGTGTCTCGCTTATTGGC 59.778 50.000 0.00 0.00 0.00 4.52
155 156 2.472861 CGCTATGTGTCTCGCTTATTGG 59.527 50.000 0.00 0.00 0.00 3.16
156 157 2.097202 GCGCTATGTGTCTCGCTTATTG 60.097 50.000 0.00 0.00 43.70 1.90
157 158 2.128035 GCGCTATGTGTCTCGCTTATT 58.872 47.619 0.00 0.00 43.70 1.40
158 159 1.603172 GGCGCTATGTGTCTCGCTTAT 60.603 52.381 7.64 0.00 45.97 1.73
160 161 1.519455 GGCGCTATGTGTCTCGCTT 60.519 57.895 7.64 0.00 45.97 4.68
161 162 2.105128 GGCGCTATGTGTCTCGCT 59.895 61.111 7.64 0.00 45.97 4.93
162 163 2.962253 GGGCGCTATGTGTCTCGC 60.962 66.667 7.64 0.00 45.99 5.03
163 164 2.655364 CGGGCGCTATGTGTCTCG 60.655 66.667 7.64 0.00 0.00 4.04
237 238 3.181459 GGAGAGAGGGACCAAGATAAAGC 60.181 52.174 0.00 0.00 0.00 3.51
238 239 3.389656 GGGAGAGAGGGACCAAGATAAAG 59.610 52.174 0.00 0.00 0.00 1.85
239 240 3.246350 TGGGAGAGAGGGACCAAGATAAA 60.246 47.826 0.00 0.00 0.00 1.40
253 254 3.389139 TATGGCCGCCTGGGAGAGA 62.389 63.158 11.61 0.00 38.47 3.10
283 284 2.583593 GCAGAGGATGACCGCGAC 60.584 66.667 8.23 1.20 40.86 5.19
284 285 3.838271 GGCAGAGGATGACCGCGA 61.838 66.667 8.23 0.00 40.86 5.87
298 4539 2.362375 GGCAAGGGGAAATCGGCA 60.362 61.111 0.00 0.00 0.00 5.69
368 4611 2.038387 ACATATGTGGCGGAAGGAAC 57.962 50.000 7.78 0.00 0.00 3.62
403 4646 2.422803 CGAGGGATTAATGGGGCTTCAA 60.423 50.000 0.00 0.00 0.00 2.69
560 4803 6.102663 ACTGACACATATGAGAAGTACAAGC 58.897 40.000 10.38 0.00 0.00 4.01
568 4822 4.929211 CCGTGAAACTGACACATATGAGAA 59.071 41.667 10.38 0.00 38.04 2.87
569 4823 4.021456 ACCGTGAAACTGACACATATGAGA 60.021 41.667 10.38 0.00 38.04 3.27
570 4824 4.091945 CACCGTGAAACTGACACATATGAG 59.908 45.833 10.38 3.79 38.04 2.90
571 4825 3.993736 CACCGTGAAACTGACACATATGA 59.006 43.478 10.38 0.00 38.04 2.15
572 4826 3.125146 CCACCGTGAAACTGACACATATG 59.875 47.826 0.00 0.00 38.04 1.78
573 4827 3.334691 CCACCGTGAAACTGACACATAT 58.665 45.455 0.00 0.00 38.04 1.78
574 4828 2.761559 CCACCGTGAAACTGACACATA 58.238 47.619 0.00 0.00 38.04 2.29
575 4829 1.593196 CCACCGTGAAACTGACACAT 58.407 50.000 0.00 0.00 38.04 3.21
576 4830 1.092921 GCCACCGTGAAACTGACACA 61.093 55.000 0.00 0.00 38.04 3.72
577 4831 0.814010 AGCCACCGTGAAACTGACAC 60.814 55.000 0.00 0.00 35.26 3.67
578 4832 0.813610 CAGCCACCGTGAAACTGACA 60.814 55.000 0.00 0.00 31.75 3.58
579 4833 0.531974 TCAGCCACCGTGAAACTGAC 60.532 55.000 12.24 0.00 32.65 3.51
580 4834 0.396435 ATCAGCCACCGTGAAACTGA 59.604 50.000 16.34 16.34 41.28 3.41
581 4835 0.518636 CATCAGCCACCGTGAAACTG 59.481 55.000 0.00 5.10 31.75 3.16
700 5050 0.610232 ATGAGGTGCAAGGCCAAGAC 60.610 55.000 5.01 0.00 0.00 3.01
701 5051 0.322816 GATGAGGTGCAAGGCCAAGA 60.323 55.000 5.01 0.00 0.00 3.02
702 5052 0.323178 AGATGAGGTGCAAGGCCAAG 60.323 55.000 5.01 0.00 0.00 3.61
703 5053 0.112995 AAGATGAGGTGCAAGGCCAA 59.887 50.000 5.01 0.00 0.00 4.52
704 5054 0.991146 TAAGATGAGGTGCAAGGCCA 59.009 50.000 5.01 0.00 0.00 5.36
706 5056 3.019564 ACAATAAGATGAGGTGCAAGGC 58.980 45.455 0.00 0.00 0.00 4.35
707 5057 4.012374 ACACAATAAGATGAGGTGCAAGG 58.988 43.478 0.00 0.00 32.89 3.61
708 5058 4.142534 CCACACAATAAGATGAGGTGCAAG 60.143 45.833 0.00 0.00 32.89 4.01
709 5059 3.758023 CCACACAATAAGATGAGGTGCAA 59.242 43.478 0.00 0.00 32.89 4.08
710 5060 3.244875 ACCACACAATAAGATGAGGTGCA 60.245 43.478 0.00 0.00 32.89 4.57
711 5061 3.347216 ACCACACAATAAGATGAGGTGC 58.653 45.455 0.00 0.00 32.89 5.01
712 5062 3.941483 GGACCACACAATAAGATGAGGTG 59.059 47.826 0.00 0.00 35.66 4.00
713 5063 3.846588 AGGACCACACAATAAGATGAGGT 59.153 43.478 0.00 0.00 0.00 3.85
714 5064 4.494091 AGGACCACACAATAAGATGAGG 57.506 45.455 0.00 0.00 0.00 3.86
715 5065 6.471233 TCTAGGACCACACAATAAGATGAG 57.529 41.667 0.00 0.00 0.00 2.90
716 5066 6.867519 TTCTAGGACCACACAATAAGATGA 57.132 37.500 0.00 0.00 0.00 2.92
717 5067 7.225538 GTGATTCTAGGACCACACAATAAGATG 59.774 40.741 0.00 0.00 0.00 2.90
718 5068 7.275920 GTGATTCTAGGACCACACAATAAGAT 58.724 38.462 0.00 0.00 0.00 2.40
719 5069 6.351881 GGTGATTCTAGGACCACACAATAAGA 60.352 42.308 0.00 0.00 0.00 2.10
720 5070 5.817816 GGTGATTCTAGGACCACACAATAAG 59.182 44.000 0.00 0.00 0.00 1.73
721 5071 5.249622 TGGTGATTCTAGGACCACACAATAA 59.750 40.000 0.00 0.00 34.75 1.40
722 5072 4.780554 TGGTGATTCTAGGACCACACAATA 59.219 41.667 0.00 0.00 34.75 1.90
723 5073 3.587061 TGGTGATTCTAGGACCACACAAT 59.413 43.478 0.00 0.00 34.75 2.71
724 5074 2.976185 TGGTGATTCTAGGACCACACAA 59.024 45.455 0.00 0.00 34.75 3.33
725 5075 2.615391 TGGTGATTCTAGGACCACACA 58.385 47.619 0.00 0.00 34.75 3.72
726 5076 3.335579 GTTGGTGATTCTAGGACCACAC 58.664 50.000 0.00 0.00 39.52 3.82
727 5077 2.028476 CGTTGGTGATTCTAGGACCACA 60.028 50.000 0.00 0.00 39.52 4.17
728 5078 2.028385 ACGTTGGTGATTCTAGGACCAC 60.028 50.000 0.00 0.00 39.52 4.16
729 5079 2.253610 ACGTTGGTGATTCTAGGACCA 58.746 47.619 0.00 0.00 38.01 4.02
730 5080 3.259902 GAACGTTGGTGATTCTAGGACC 58.740 50.000 5.00 0.00 0.00 4.46
731 5081 3.259902 GGAACGTTGGTGATTCTAGGAC 58.740 50.000 5.00 0.00 0.00 3.85
732 5082 3.604875 GGAACGTTGGTGATTCTAGGA 57.395 47.619 5.00 0.00 0.00 2.94
757 5107 4.877823 TCATCACATTTGTATGTCCAGCTC 59.122 41.667 0.00 0.00 43.07 4.09
768 5118 4.586884 AGCTCATCAGTCATCACATTTGT 58.413 39.130 0.00 0.00 0.00 2.83
839 5202 3.940209 TGGCATGAAGTTGAATGGAAC 57.060 42.857 0.00 0.00 0.00 3.62
840 5203 3.833650 ACATGGCATGAAGTTGAATGGAA 59.166 39.130 32.74 0.00 0.00 3.53
842 5205 3.732774 CGACATGGCATGAAGTTGAATGG 60.733 47.826 32.74 6.29 0.00 3.16
844 5207 3.084039 ACGACATGGCATGAAGTTGAAT 58.916 40.909 32.74 8.61 0.00 2.57
847 5210 1.131126 GGACGACATGGCATGAAGTTG 59.869 52.381 32.74 16.92 0.00 3.16
848 5211 1.271325 TGGACGACATGGCATGAAGTT 60.271 47.619 32.74 11.38 0.00 2.66
849 5212 0.324614 TGGACGACATGGCATGAAGT 59.675 50.000 32.74 27.77 0.00 3.01
850 5213 1.399440 CTTGGACGACATGGCATGAAG 59.601 52.381 32.74 25.08 0.00 3.02
851 5214 1.452110 CTTGGACGACATGGCATGAA 58.548 50.000 32.74 14.69 0.00 2.57
852 5215 0.392863 CCTTGGACGACATGGCATGA 60.393 55.000 32.74 7.36 37.55 3.07
853 5216 1.378882 CCCTTGGACGACATGGCATG 61.379 60.000 25.31 25.31 41.77 4.06
854 5217 1.077501 CCCTTGGACGACATGGCAT 60.078 57.895 0.00 0.00 41.77 4.40
855 5218 2.350895 CCCTTGGACGACATGGCA 59.649 61.111 0.00 0.00 41.77 4.92
858 5221 2.438434 GGCCCCTTGGACGACATG 60.438 66.667 0.00 0.00 0.00 3.21
995 5366 1.622811 GAGGATGAGGAGCCATACCTG 59.377 57.143 0.00 0.00 37.93 4.00
1019 5390 1.292541 GACAGGAGGACGAACACCC 59.707 63.158 0.00 0.00 0.00 4.61
1044 5415 2.606725 GTCATCGGATTTGCAGAGACAG 59.393 50.000 0.00 0.00 0.00 3.51
1192 5563 2.902705 TACGTATGCTTGGGGATGTC 57.097 50.000 0.00 0.00 0.00 3.06
1205 5576 4.186159 GTTAGCAACCCACACATACGTAT 58.814 43.478 1.14 1.14 0.00 3.06
1306 5677 1.133915 TGTCCAAAGAACGAGGCCTTT 60.134 47.619 6.77 0.00 33.29 3.11
1419 5790 4.006319 GGTAATGGAAGCTCTGCCATATC 58.994 47.826 9.75 6.32 43.85 1.63
1797 6172 2.240414 TGATGATGAGGTGCTGTTCCAT 59.760 45.455 0.00 0.00 0.00 3.41
1826 6201 3.007398 AGGATTAGGCCGCTCTATGAAAG 59.993 47.826 0.00 0.00 0.00 2.62
1919 6294 1.228245 TCAAACCCACTGAGGCAGC 60.228 57.895 0.00 0.00 34.37 5.25
1939 6314 3.056107 CGGGAGAAGTTTACACCATCAGA 60.056 47.826 0.00 0.00 0.00 3.27
1970 6345 1.078656 ACCTCAGCTCCTCCTTTCTCT 59.921 52.381 0.00 0.00 0.00 3.10
1988 6363 4.466726 AGAAACTATCTCCACTACCACACC 59.533 45.833 0.00 0.00 30.46 4.16
1989 6364 5.662674 AGAAACTATCTCCACTACCACAC 57.337 43.478 0.00 0.00 30.46 3.82
2037 6412 9.599866 CTGTTCCTGATATACACAAACTTATCA 57.400 33.333 0.00 0.00 31.95 2.15
2053 6428 3.181440 TGGTCAAAGCTTCTGTTCCTGAT 60.181 43.478 0.00 0.00 0.00 2.90
2289 6664 3.543680 AAAGGGATAGATCACACCGTG 57.456 47.619 0.00 0.00 30.91 4.94
2352 6890 3.189495 TCTTGCGACTGTTGTGTTTTTCA 59.811 39.130 0.00 0.00 0.00 2.69
2387 6925 4.919168 CGCAAGAGAATGATGCTTTCAAAA 59.081 37.500 0.00 0.00 37.46 2.44
2391 6929 2.223433 CCCGCAAGAGAATGATGCTTTC 60.223 50.000 0.00 0.00 37.92 2.62
2392 6930 1.747355 CCCGCAAGAGAATGATGCTTT 59.253 47.619 0.00 0.00 37.92 3.51
2395 6933 0.659957 GTCCCGCAAGAGAATGATGC 59.340 55.000 0.00 0.00 43.02 3.91
2396 6934 2.322355 AGTCCCGCAAGAGAATGATG 57.678 50.000 0.00 0.00 43.02 3.07
2397 6935 6.365970 AATATAGTCCCGCAAGAGAATGAT 57.634 37.500 0.00 0.00 43.02 2.45
2398 6936 5.808366 AATATAGTCCCGCAAGAGAATGA 57.192 39.130 0.00 0.00 43.02 2.57
2399 6937 6.146837 CAGAAATATAGTCCCGCAAGAGAATG 59.853 42.308 0.00 0.00 43.02 2.67
2400 6938 6.226787 CAGAAATATAGTCCCGCAAGAGAAT 58.773 40.000 0.00 0.00 43.02 2.40
2401 6939 5.601662 CAGAAATATAGTCCCGCAAGAGAA 58.398 41.667 0.00 0.00 43.02 2.87
2404 6942 3.494398 GGCAGAAATATAGTCCCGCAAGA 60.494 47.826 0.00 0.00 43.02 3.02
2405 6943 2.808543 GGCAGAAATATAGTCCCGCAAG 59.191 50.000 0.00 0.00 0.00 4.01
2406 6944 2.438021 AGGCAGAAATATAGTCCCGCAA 59.562 45.455 0.00 0.00 0.00 4.85
2408 6946 2.841442 AGGCAGAAATATAGTCCCGC 57.159 50.000 0.00 0.00 0.00 6.13
2409 6947 4.752101 CAGAAAGGCAGAAATATAGTCCCG 59.248 45.833 0.00 0.00 0.00 5.14
2410 6948 4.517075 GCAGAAAGGCAGAAATATAGTCCC 59.483 45.833 0.00 0.00 0.00 4.46
2411 6949 5.126067 TGCAGAAAGGCAGAAATATAGTCC 58.874 41.667 0.00 0.00 39.25 3.85
2424 6962 2.358898 TGTTTCTCAACTGCAGAAAGGC 59.641 45.455 23.35 8.73 39.90 4.35
2425 6963 3.879295 TCTGTTTCTCAACTGCAGAAAGG 59.121 43.478 23.35 7.89 39.90 3.11
2427 6965 4.517285 ACTCTGTTTCTCAACTGCAGAAA 58.483 39.130 23.35 7.39 37.50 2.52
2430 6968 5.468072 ACATTACTCTGTTTCTCAACTGCAG 59.532 40.000 13.48 13.48 33.58 4.41
2431 6969 5.368145 ACATTACTCTGTTTCTCAACTGCA 58.632 37.500 0.00 0.00 33.58 4.41
2432 6970 5.931441 ACATTACTCTGTTTCTCAACTGC 57.069 39.130 0.00 0.00 33.58 4.40
2433 6971 9.208022 TCAATACATTACTCTGTTTCTCAACTG 57.792 33.333 0.00 0.00 33.58 3.16
2434 6972 9.429359 CTCAATACATTACTCTGTTTCTCAACT 57.571 33.333 0.00 0.00 33.58 3.16
2435 6973 8.660373 CCTCAATACATTACTCTGTTTCTCAAC 58.340 37.037 0.00 0.00 0.00 3.18
2436 6974 8.593679 TCCTCAATACATTACTCTGTTTCTCAA 58.406 33.333 0.00 0.00 0.00 3.02
2438 6976 9.606631 AATCCTCAATACATTACTCTGTTTCTC 57.393 33.333 0.00 0.00 0.00 2.87
2439 6977 9.388506 CAATCCTCAATACATTACTCTGTTTCT 57.611 33.333 0.00 0.00 0.00 2.52
2440 6978 9.167311 ACAATCCTCAATACATTACTCTGTTTC 57.833 33.333 0.00 0.00 0.00 2.78
2444 6982 9.469807 GAGTACAATCCTCAATACATTACTCTG 57.530 37.037 0.00 0.00 0.00 3.35
2445 6983 8.643324 GGAGTACAATCCTCAATACATTACTCT 58.357 37.037 0.00 0.00 36.35 3.24
2446 6984 7.873505 GGGAGTACAATCCTCAATACATTACTC 59.126 40.741 0.00 0.00 39.50 2.59
2447 6985 7.347222 TGGGAGTACAATCCTCAATACATTACT 59.653 37.037 0.00 0.00 39.50 2.24
2448 6986 7.506114 TGGGAGTACAATCCTCAATACATTAC 58.494 38.462 0.00 0.00 39.50 1.89
2449 6987 7.567250 TCTGGGAGTACAATCCTCAATACATTA 59.433 37.037 0.00 0.00 39.50 1.90
2450 6988 6.386927 TCTGGGAGTACAATCCTCAATACATT 59.613 38.462 0.00 0.00 39.50 2.71
2452 6990 5.277250 TCTGGGAGTACAATCCTCAATACA 58.723 41.667 0.00 0.00 39.50 2.29
2453 6991 5.871396 TCTGGGAGTACAATCCTCAATAC 57.129 43.478 0.00 0.00 39.50 1.89
2454 6992 6.884472 TTTCTGGGAGTACAATCCTCAATA 57.116 37.500 0.00 0.00 39.50 1.90
2455 6993 5.779241 TTTCTGGGAGTACAATCCTCAAT 57.221 39.130 0.00 0.00 39.50 2.57
2456 6994 5.500234 CATTTCTGGGAGTACAATCCTCAA 58.500 41.667 0.00 0.00 39.50 3.02
2458 6996 4.455606 CCATTTCTGGGAGTACAATCCTC 58.544 47.826 0.00 0.00 39.04 3.71
2459 6997 3.372025 GCCATTTCTGGGAGTACAATCCT 60.372 47.826 0.00 0.00 43.36 3.24
2460 6998 2.952310 GCCATTTCTGGGAGTACAATCC 59.048 50.000 0.00 0.00 43.36 3.01
2461 6999 3.891049 AGCCATTTCTGGGAGTACAATC 58.109 45.455 0.00 0.00 43.36 2.67
2462 7000 4.721776 TCTAGCCATTTCTGGGAGTACAAT 59.278 41.667 0.00 0.00 43.36 2.71
2463 7001 4.101114 TCTAGCCATTTCTGGGAGTACAA 58.899 43.478 0.00 0.00 43.36 2.41
2465 7003 4.636249 CATCTAGCCATTTCTGGGAGTAC 58.364 47.826 0.00 0.00 43.36 2.73
2466 7004 3.071602 GCATCTAGCCATTTCTGGGAGTA 59.928 47.826 0.00 0.00 43.36 2.59
2467 7005 2.158696 GCATCTAGCCATTTCTGGGAGT 60.159 50.000 0.00 0.00 43.36 3.85
2468 7006 2.158711 TGCATCTAGCCATTTCTGGGAG 60.159 50.000 0.00 0.00 43.36 4.30
2469 7007 1.845791 TGCATCTAGCCATTTCTGGGA 59.154 47.619 0.00 0.00 43.36 4.37
2470 7008 2.228059 CTGCATCTAGCCATTTCTGGG 58.772 52.381 0.00 0.00 43.36 4.45
2473 7011 4.410228 TCCTAACTGCATCTAGCCATTTCT 59.590 41.667 0.00 0.00 44.83 2.52
2474 7012 4.708177 TCCTAACTGCATCTAGCCATTTC 58.292 43.478 0.00 0.00 44.83 2.17
2475 7013 4.778213 TCCTAACTGCATCTAGCCATTT 57.222 40.909 0.00 0.00 44.83 2.32
2478 7016 3.070159 GTCATCCTAACTGCATCTAGCCA 59.930 47.826 0.00 0.00 44.83 4.75
2479 7017 3.070159 TGTCATCCTAACTGCATCTAGCC 59.930 47.826 0.00 0.00 44.83 3.93
2481 7019 7.225784 AGTATGTCATCCTAACTGCATCTAG 57.774 40.000 0.00 0.00 0.00 2.43
2482 7020 8.706322 TTAGTATGTCATCCTAACTGCATCTA 57.294 34.615 0.00 0.00 0.00 1.98
2483 7021 7.603180 TTAGTATGTCATCCTAACTGCATCT 57.397 36.000 0.00 0.00 0.00 2.90
2484 7022 8.090831 TGATTAGTATGTCATCCTAACTGCATC 58.909 37.037 0.33 1.95 0.00 3.91
2486 7024 7.360113 TGATTAGTATGTCATCCTAACTGCA 57.640 36.000 0.33 0.00 0.00 4.41
2487 7025 8.090831 TCATGATTAGTATGTCATCCTAACTGC 58.909 37.037 0.33 0.00 32.98 4.40
2488 7026 9.987272 TTCATGATTAGTATGTCATCCTAACTG 57.013 33.333 0.00 0.77 32.98 3.16
2493 7031 9.685276 TGTTTTTCATGATTAGTATGTCATCCT 57.315 29.630 0.00 0.00 32.98 3.24
2532 7070 6.409473 GCGTTCAAAATTTAACATGCGTTTTT 59.591 30.769 0.00 0.00 36.52 1.94
2538 7076 6.150738 TCATGCGTTCAAAATTTAACATGC 57.849 33.333 0.00 3.56 34.95 4.06
2539 7077 8.649841 AGAATCATGCGTTCAAAATTTAACATG 58.350 29.630 11.59 0.00 35.99 3.21
2540 7078 8.761575 AGAATCATGCGTTCAAAATTTAACAT 57.238 26.923 11.59 0.00 0.00 2.71
2541 7079 8.081633 AGAGAATCATGCGTTCAAAATTTAACA 58.918 29.630 11.59 0.00 37.82 2.41
2542 7080 8.452989 AGAGAATCATGCGTTCAAAATTTAAC 57.547 30.769 11.59 0.00 37.82 2.01
2578 7130 4.860907 GTCAACTGCATAAAGCCAGAAATG 59.139 41.667 0.00 0.00 44.83 2.32
2775 7332 1.849829 CGTCGTTTTCCTGCCAAAAAC 59.150 47.619 7.85 7.85 41.18 2.43
3091 7661 2.616510 CCCTTGCCCAGAACTCTTACTG 60.617 54.545 0.00 0.00 0.00 2.74
3235 7805 7.201875 CCAAAAAGGAAGGTGTCTAAGCTTTTA 60.202 37.037 3.20 0.00 46.56 1.52
3780 8355 7.344134 TGAGATTGGATGAACTGATCTTCAAT 58.656 34.615 1.90 0.00 33.85 2.57
3783 8358 8.899427 TTATGAGATTGGATGAACTGATCTTC 57.101 34.615 0.00 0.00 0.00 2.87
4064 8640 7.099120 GGGCTGTTTCATTTTCTAACATGAAT 58.901 34.615 0.00 0.00 38.81 2.57
4323 8913 4.685169 AACGTCCATGAAAATAGCACAG 57.315 40.909 0.00 0.00 0.00 3.66
4338 8930 5.575218 AGTTCACAAAATGTCAAAAACGTCC 59.425 36.000 0.00 0.00 0.00 4.79
4343 8935 8.449397 CCATTGAAGTTCACAAAATGTCAAAAA 58.551 29.630 4.68 0.00 0.00 1.94
4347 8939 6.096705 AGACCATTGAAGTTCACAAAATGTCA 59.903 34.615 4.68 0.00 31.77 3.58
4350 8942 6.275335 ACAGACCATTGAAGTTCACAAAATG 58.725 36.000 4.68 6.67 0.00 2.32
4391 8983 1.902508 CAGGTAGCCTCTCCACTTGAA 59.097 52.381 0.00 0.00 0.00 2.69
4417 9010 9.264719 GAAAATTCATCAAGAGGAAACAATTGT 57.735 29.630 4.92 4.92 34.63 2.71
4468 9214 2.381961 ACTTGGAATTTCAGGCCCCTTA 59.618 45.455 0.00 0.00 0.00 2.69
4471 9217 1.644509 AACTTGGAATTTCAGGCCCC 58.355 50.000 0.00 0.00 0.00 5.80
4482 9228 4.202357 TGCTAGCTCAGAGAAAACTTGGAA 60.202 41.667 17.23 0.00 0.00 3.53
4485 9231 4.437121 GCATGCTAGCTCAGAGAAAACTTG 60.437 45.833 17.23 0.00 0.00 3.16
4486 9232 3.688673 GCATGCTAGCTCAGAGAAAACTT 59.311 43.478 17.23 0.00 0.00 2.66
4527 9310 5.259632 AGCAGCAGAAGATAAAAAGTGGAT 58.740 37.500 0.00 0.00 0.00 3.41
4546 9329 0.457851 AGCTTACTCGCCACTAGCAG 59.542 55.000 0.00 0.00 44.04 4.24
4557 9340 3.552478 GGGCGTGTAATCCTAGCTTACTC 60.552 52.174 0.00 8.93 31.71 2.59
4577 9360 3.533606 AGATCATCGTCAGACTTTGGG 57.466 47.619 0.00 0.00 0.00 4.12
4590 9373 7.137426 GCCATCTGAATACACAAAAGATCATC 58.863 38.462 0.00 0.00 0.00 2.92
4591 9374 6.238566 CGCCATCTGAATACACAAAAGATCAT 60.239 38.462 0.00 0.00 0.00 2.45
4615 9399 0.320073 TACCTGAAGTTTCGGCCACG 60.320 55.000 2.24 0.00 42.74 4.94
4644 9428 1.528129 GCTGGACCTGAACTTCCAAG 58.472 55.000 1.91 0.00 41.49 3.61
4744 9528 0.394938 TGGTCTTACAGGCGCAAGAA 59.605 50.000 10.83 0.00 43.02 2.52
4839 9816 7.426929 CTAAATGATTTAGGCTAGCGATGTT 57.573 36.000 15.45 0.00 39.11 2.71
4860 9837 3.767673 GGCGGAGGTATACATGATCCTAA 59.232 47.826 5.01 0.00 0.00 2.69
4864 9841 1.816835 TCGGCGGAGGTATACATGATC 59.183 52.381 7.21 0.00 0.00 2.92
4880 9857 5.741388 AGTGTGATTTCTGATATTTCGGC 57.259 39.130 0.00 0.00 0.00 5.54
4908 9885 1.666888 GCGCAAGTGCAACAGCTAAAT 60.667 47.619 0.30 0.00 41.43 1.40
4927 9904 1.753073 CTGAATGATGAAAGGGGTGGC 59.247 52.381 0.00 0.00 0.00 5.01
4995 9972 2.644887 ACAATGGATGTGCGCTTGT 58.355 47.368 9.73 5.98 41.93 3.16
5033 10010 5.126067 TCTTTGTCTTTTAGCAAGCACTCT 58.874 37.500 0.00 0.00 0.00 3.24
5086 10063 1.452953 TTCACGTCGTGCAGAGACCT 61.453 55.000 20.56 3.09 35.33 3.85
5092 10069 0.927537 TTCAACTTCACGTCGTGCAG 59.072 50.000 21.11 21.11 33.34 4.41
5127 10104 2.504244 GTCGAACTCGTGGAGCCG 60.504 66.667 0.00 0.00 40.80 5.52
5132 10109 2.163815 AGAGTAATGGTCGAACTCGTGG 59.836 50.000 0.33 0.00 43.51 4.94
5157 10134 1.409241 CCATGCAGCTCAACACCCTAT 60.409 52.381 0.00 0.00 0.00 2.57
5170 10147 1.470098 GTGAAAGCTACCACCATGCAG 59.530 52.381 7.05 0.00 0.00 4.41
5190 10167 3.475566 TGACTCTGTTTTCACCCTCTG 57.524 47.619 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.