Multiple sequence alignment - TraesCS2B01G568000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G568000 chr2B 100.000 5729 0 0 1 5729 758895436 758901164 0.000000e+00 10580.0
1 TraesCS2B01G568000 chr2B 83.634 1937 280 27 852 2768 706792961 706791042 0.000000e+00 1786.0
2 TraesCS2B01G568000 chr2B 85.874 1699 205 20 2881 4563 706790847 706789168 0.000000e+00 1775.0
3 TraesCS2B01G568000 chr2B 80.207 1354 230 25 1062 2387 758666322 758667665 0.000000e+00 981.0
4 TraesCS2B01G568000 chr2B 91.064 235 20 1 191 425 758673445 758673678 3.330000e-82 316.0
5 TraesCS2B01G568000 chr2D 88.723 2545 162 43 340 2791 619572386 619574898 0.000000e+00 2994.0
6 TraesCS2B01G568000 chr2D 90.277 2314 168 26 2791 5086 619574961 619577235 0.000000e+00 2974.0
7 TraesCS2B01G568000 chr2D 82.369 1781 239 47 2918 4674 585694262 585692533 0.000000e+00 1480.0
8 TraesCS2B01G568000 chr2D 80.258 1783 284 39 1038 2791 585696208 585694465 0.000000e+00 1280.0
9 TraesCS2B01G568000 chr2D 83.546 1331 212 2 1027 2350 585740506 585739176 0.000000e+00 1238.0
10 TraesCS2B01G568000 chr2D 80.267 1348 240 15 1062 2387 619566035 619567378 0.000000e+00 992.0
11 TraesCS2B01G568000 chr2D 83.929 1008 137 15 2919 3921 585738381 585737394 0.000000e+00 941.0
12 TraesCS2B01G568000 chr2D 85.185 81 5 6 4957 5033 593118599 593118676 6.160000e-10 76.8
13 TraesCS2B01G568000 chr2A 88.795 2365 185 32 307 2613 751036533 751038875 0.000000e+00 2826.0
14 TraesCS2B01G568000 chr2A 89.459 1831 131 18 309 2110 751171224 751173021 0.000000e+00 2255.0
15 TraesCS2B01G568000 chr2A 86.889 1678 192 17 2897 4559 751173370 751175034 0.000000e+00 1855.0
16 TraesCS2B01G568000 chr2A 85.998 1664 187 27 1060 2715 751013336 751014961 0.000000e+00 1740.0
17 TraesCS2B01G568000 chr2A 89.751 1327 103 17 2812 4129 751048420 751049722 0.000000e+00 1666.0
18 TraesCS2B01G568000 chr2A 89.039 1259 114 13 2878 4129 751015026 751016267 0.000000e+00 1539.0
19 TraesCS2B01G568000 chr2A 82.273 1777 243 46 2918 4674 719737820 719736096 0.000000e+00 1471.0
20 TraesCS2B01G568000 chr2A 92.517 735 50 3 3227 3957 751055339 751056072 0.000000e+00 1048.0
21 TraesCS2B01G568000 chr2A 88.509 731 74 10 3948 4674 751056916 751057640 0.000000e+00 876.0
22 TraesCS2B01G568000 chr2A 92.191 397 27 3 4693 5086 751022036 751022431 5.010000e-155 558.0
23 TraesCS2B01G568000 chr2A 87.665 454 46 3 4235 4682 751016383 751016832 2.370000e-143 520.0
24 TraesCS2B01G568000 chr2A 87.445 454 47 3 4235 4682 751049838 751050287 1.100000e-141 514.0
25 TraesCS2B01G568000 chr2A 83.804 531 70 9 1033 1560 719798339 719797822 1.860000e-134 490.0
26 TraesCS2B01G568000 chr2A 79.367 664 90 24 4022 4674 719727705 719727078 1.910000e-114 424.0
27 TraesCS2B01G568000 chr2A 85.897 234 31 2 192 424 751170379 751170611 1.230000e-61 248.0
28 TraesCS2B01G568000 chr2A 83.761 234 36 2 192 424 751031402 751031634 2.690000e-53 220.0
29 TraesCS2B01G568000 chr3A 96.575 584 20 0 5144 5727 547397758 547397175 0.000000e+00 968.0
30 TraesCS2B01G568000 chr5B 84.896 576 73 8 5154 5727 470285701 470286264 2.320000e-158 569.0
31 TraesCS2B01G568000 chr5B 78.862 123 22 3 4955 5075 582153241 582153361 4.760000e-11 80.5
32 TraesCS2B01G568000 chr5B 86.364 66 6 3 4957 5019 582157930 582157995 1.030000e-07 69.4
33 TraesCS2B01G568000 chr5D 76.988 591 116 19 5144 5726 329430875 329430297 2.580000e-83 320.0
34 TraesCS2B01G568000 chr5D 81.452 124 17 6 4955 5075 475005074 475005194 4.720000e-16 97.1
35 TraesCS2B01G568000 chr5D 85.714 63 6 3 4957 5016 126268690 126268628 4.790000e-06 63.9
36 TraesCS2B01G568000 chr1D 81.301 123 17 5 4957 5075 33593957 33594077 1.700000e-15 95.3
37 TraesCS2B01G568000 chr1D 81.481 81 12 3 4977 5055 387470098 387470019 4.790000e-06 63.9
38 TraesCS2B01G568000 chr7D 100.000 28 0 0 5006 5033 25874100 25874127 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G568000 chr2B 758895436 758901164 5728 False 10580.000000 10580 100.000000 1 5729 1 chr2B.!!$F3 5728
1 TraesCS2B01G568000 chr2B 706789168 706792961 3793 True 1780.500000 1786 84.754000 852 4563 2 chr2B.!!$R1 3711
2 TraesCS2B01G568000 chr2B 758666322 758667665 1343 False 981.000000 981 80.207000 1062 2387 1 chr2B.!!$F1 1325
3 TraesCS2B01G568000 chr2D 619572386 619577235 4849 False 2984.000000 2994 89.500000 340 5086 2 chr2D.!!$F3 4746
4 TraesCS2B01G568000 chr2D 585692533 585696208 3675 True 1380.000000 1480 81.313500 1038 4674 2 chr2D.!!$R1 3636
5 TraesCS2B01G568000 chr2D 585737394 585740506 3112 True 1089.500000 1238 83.737500 1027 3921 2 chr2D.!!$R2 2894
6 TraesCS2B01G568000 chr2D 619566035 619567378 1343 False 992.000000 992 80.267000 1062 2387 1 chr2D.!!$F2 1325
7 TraesCS2B01G568000 chr2A 751036533 751038875 2342 False 2826.000000 2826 88.795000 307 2613 1 chr2A.!!$F3 2306
8 TraesCS2B01G568000 chr2A 719736096 719737820 1724 True 1471.000000 1471 82.273000 2918 4674 1 chr2A.!!$R2 1756
9 TraesCS2B01G568000 chr2A 751170379 751175034 4655 False 1452.666667 2255 87.415000 192 4559 3 chr2A.!!$F7 4367
10 TraesCS2B01G568000 chr2A 751013336 751016832 3496 False 1266.333333 1740 87.567333 1060 4682 3 chr2A.!!$F4 3622
11 TraesCS2B01G568000 chr2A 751048420 751050287 1867 False 1090.000000 1666 88.598000 2812 4682 2 chr2A.!!$F5 1870
12 TraesCS2B01G568000 chr2A 751055339 751057640 2301 False 962.000000 1048 90.513000 3227 4674 2 chr2A.!!$F6 1447
13 TraesCS2B01G568000 chr2A 719797822 719798339 517 True 490.000000 490 83.804000 1033 1560 1 chr2A.!!$R3 527
14 TraesCS2B01G568000 chr2A 719727078 719727705 627 True 424.000000 424 79.367000 4022 4674 1 chr2A.!!$R1 652
15 TraesCS2B01G568000 chr3A 547397175 547397758 583 True 968.000000 968 96.575000 5144 5727 1 chr3A.!!$R1 583
16 TraesCS2B01G568000 chr5B 470285701 470286264 563 False 569.000000 569 84.896000 5154 5727 1 chr5B.!!$F1 573
17 TraesCS2B01G568000 chr5D 329430297 329430875 578 True 320.000000 320 76.988000 5144 5726 1 chr5D.!!$R2 582


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.035458 GAGCCTATATGCTGCCCGTT 59.965 55.000 7.29 0.0 42.95 4.44 F
138 139 0.035820 TGTAGCTTTTAGGCCCGGTG 60.036 55.000 0.00 0.0 0.00 4.94 F
175 176 0.172352 GACAGGCCTCTGAGAGAACG 59.828 60.000 11.82 0.0 43.49 3.95 F
297 298 0.178987 TATGCGTCTCCTCCTCCTCC 60.179 60.000 0.00 0.0 0.00 4.30 F
380 1114 0.181587 TCGAAAGCCAAGTCAACCCA 59.818 50.000 0.00 0.0 0.00 4.51 F
1707 2536 0.248336 CTGCGCTCGACGGTGTATTA 60.248 55.000 9.73 0.0 43.93 0.98 F
2496 3366 2.030893 TCTTTCTTCCGCATTTGTGCTG 60.031 45.455 0.00 0.0 0.00 4.41 F
4134 6262 0.820871 GAAGATCAGCTCACGTCCCT 59.179 55.000 0.00 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 2564 0.181350 GGGACATGATGGGACCTGAC 59.819 60.000 0.00 0.0 0.00 3.51 R
2137 2970 0.457853 CTGCATTCTGCTGCGCATTT 60.458 50.000 12.24 0.0 45.31 2.32 R
2229 3071 1.929494 TCCCCCATCCAAACTAAGCAT 59.071 47.619 0.00 0.0 0.00 3.79 R
2350 3197 2.991250 AGGCAATCCATCACACAGTAC 58.009 47.619 0.00 0.0 33.74 2.73 R
2403 3267 8.752187 CCACCTTAGTAAACTTAGTGGTATACA 58.248 37.037 5.01 0.0 35.87 2.29 R
2620 3516 1.135859 CGTCTGACTTTGATGCAAGGC 60.136 52.381 6.21 0.0 0.00 4.35 R
4247 6424 0.819582 GCCTGAAACATGGTGATGGG 59.180 55.000 0.00 0.0 33.39 4.00 R
5141 7347 1.202359 GCCGTTGGCTTGTCAAAAAGA 60.202 47.619 0.00 0.0 46.69 2.52 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.777478 CTCGTTAATTAGTTGCTCCCGA 58.223 45.455 0.00 0.00 0.00 5.14
22 23 3.514645 TCGTTAATTAGTTGCTCCCGAC 58.485 45.455 0.00 0.00 0.00 4.79
23 24 3.056678 TCGTTAATTAGTTGCTCCCGACA 60.057 43.478 0.00 0.00 0.00 4.35
24 25 3.306166 CGTTAATTAGTTGCTCCCGACAG 59.694 47.826 0.00 0.00 0.00 3.51
25 26 4.501071 GTTAATTAGTTGCTCCCGACAGA 58.499 43.478 0.00 0.00 0.00 3.41
26 27 3.914426 AATTAGTTGCTCCCGACAGAT 57.086 42.857 0.00 0.00 0.00 2.90
27 28 2.672961 TTAGTTGCTCCCGACAGATG 57.327 50.000 0.00 0.00 0.00 2.90
28 29 1.557099 TAGTTGCTCCCGACAGATGT 58.443 50.000 0.00 0.00 0.00 3.06
29 30 0.247736 AGTTGCTCCCGACAGATGTC 59.752 55.000 2.78 2.78 41.47 3.06
30 31 0.037326 GTTGCTCCCGACAGATGTCA 60.037 55.000 13.09 0.00 44.99 3.58
31 32 0.247460 TTGCTCCCGACAGATGTCAG 59.753 55.000 13.09 1.65 44.99 3.51
32 33 1.520342 GCTCCCGACAGATGTCAGC 60.520 63.158 13.09 10.19 44.99 4.26
33 34 1.893062 CTCCCGACAGATGTCAGCA 59.107 57.895 13.09 0.00 44.99 4.41
34 35 0.247460 CTCCCGACAGATGTCAGCAA 59.753 55.000 13.09 0.00 44.99 3.91
35 36 0.684535 TCCCGACAGATGTCAGCAAA 59.315 50.000 13.09 0.00 44.99 3.68
36 37 1.278985 TCCCGACAGATGTCAGCAAAT 59.721 47.619 13.09 0.00 44.99 2.32
37 38 1.399440 CCCGACAGATGTCAGCAAATG 59.601 52.381 13.09 0.00 44.99 2.32
38 39 2.079158 CCGACAGATGTCAGCAAATGT 58.921 47.619 13.09 0.00 44.99 2.71
39 40 2.485426 CCGACAGATGTCAGCAAATGTT 59.515 45.455 13.09 0.00 44.99 2.71
40 41 3.058016 CCGACAGATGTCAGCAAATGTTT 60.058 43.478 13.09 0.00 44.99 2.83
41 42 4.539870 CGACAGATGTCAGCAAATGTTTT 58.460 39.130 13.09 0.00 44.99 2.43
42 43 4.977963 CGACAGATGTCAGCAAATGTTTTT 59.022 37.500 13.09 0.00 44.99 1.94
62 63 4.799564 TTTTAGGGGTAGCAAATGCAAG 57.200 40.909 8.28 0.00 45.16 4.01
63 64 3.730215 TTAGGGGTAGCAAATGCAAGA 57.270 42.857 8.28 0.00 45.16 3.02
64 65 2.134789 AGGGGTAGCAAATGCAAGAG 57.865 50.000 8.28 0.00 45.16 2.85
65 66 1.635487 AGGGGTAGCAAATGCAAGAGA 59.365 47.619 8.28 0.00 45.16 3.10
66 67 2.019984 GGGGTAGCAAATGCAAGAGAG 58.980 52.381 8.28 0.00 45.16 3.20
67 68 1.403323 GGGTAGCAAATGCAAGAGAGC 59.597 52.381 8.28 0.00 45.16 4.09
68 69 1.403323 GGTAGCAAATGCAAGAGAGCC 59.597 52.381 8.28 0.00 45.16 4.70
69 70 2.363683 GTAGCAAATGCAAGAGAGCCT 58.636 47.619 8.28 0.00 45.16 4.58
70 71 2.795231 AGCAAATGCAAGAGAGCCTA 57.205 45.000 8.28 0.00 45.16 3.93
71 72 3.294038 AGCAAATGCAAGAGAGCCTAT 57.706 42.857 8.28 0.00 45.16 2.57
72 73 4.428294 AGCAAATGCAAGAGAGCCTATA 57.572 40.909 8.28 0.00 45.16 1.31
73 74 4.983053 AGCAAATGCAAGAGAGCCTATAT 58.017 39.130 8.28 0.00 45.16 0.86
74 75 4.760715 AGCAAATGCAAGAGAGCCTATATG 59.239 41.667 8.28 0.00 45.16 1.78
75 76 4.615452 GCAAATGCAAGAGAGCCTATATGC 60.615 45.833 0.00 0.00 41.59 3.14
76 77 4.637387 AATGCAAGAGAGCCTATATGCT 57.363 40.909 1.73 1.73 46.37 3.79
77 78 3.397849 TGCAAGAGAGCCTATATGCTG 57.602 47.619 7.29 0.00 42.95 4.41
78 79 2.075338 GCAAGAGAGCCTATATGCTGC 58.925 52.381 7.29 1.67 42.95 5.25
79 80 2.697654 CAAGAGAGCCTATATGCTGCC 58.302 52.381 7.29 0.00 42.95 4.85
80 81 1.274712 AGAGAGCCTATATGCTGCCC 58.725 55.000 7.29 0.00 42.95 5.36
81 82 0.108424 GAGAGCCTATATGCTGCCCG 60.108 60.000 7.29 0.00 42.95 6.13
82 83 0.833834 AGAGCCTATATGCTGCCCGT 60.834 55.000 7.29 0.00 42.95 5.28
83 84 0.035458 GAGCCTATATGCTGCCCGTT 59.965 55.000 7.29 0.00 42.95 4.44
84 85 0.474184 AGCCTATATGCTGCCCGTTT 59.526 50.000 1.27 0.00 40.90 3.60
85 86 0.875059 GCCTATATGCTGCCCGTTTC 59.125 55.000 0.00 0.00 0.00 2.78
86 87 1.543429 GCCTATATGCTGCCCGTTTCT 60.543 52.381 0.00 0.00 0.00 2.52
87 88 2.417719 CCTATATGCTGCCCGTTTCTC 58.582 52.381 0.00 0.00 0.00 2.87
88 89 2.037772 CCTATATGCTGCCCGTTTCTCT 59.962 50.000 0.00 0.00 0.00 3.10
89 90 3.258372 CCTATATGCTGCCCGTTTCTCTA 59.742 47.826 0.00 0.00 0.00 2.43
90 91 2.596904 TATGCTGCCCGTTTCTCTAC 57.403 50.000 0.00 0.00 0.00 2.59
91 92 0.905357 ATGCTGCCCGTTTCTCTACT 59.095 50.000 0.00 0.00 0.00 2.57
92 93 0.037326 TGCTGCCCGTTTCTCTACTG 60.037 55.000 0.00 0.00 0.00 2.74
93 94 0.246635 GCTGCCCGTTTCTCTACTGA 59.753 55.000 0.00 0.00 0.00 3.41
94 95 1.337823 GCTGCCCGTTTCTCTACTGAA 60.338 52.381 0.00 0.00 0.00 3.02
95 96 2.611518 CTGCCCGTTTCTCTACTGAAG 58.388 52.381 0.00 0.00 0.00 3.02
96 97 1.275291 TGCCCGTTTCTCTACTGAAGG 59.725 52.381 0.00 0.00 0.00 3.46
97 98 2.007547 GCCCGTTTCTCTACTGAAGGC 61.008 57.143 0.00 0.00 31.09 4.35
98 99 1.405661 CCCGTTTCTCTACTGAAGGCC 60.406 57.143 0.00 0.00 0.00 5.19
99 100 1.405661 CCGTTTCTCTACTGAAGGCCC 60.406 57.143 0.00 0.00 0.00 5.80
100 101 1.275291 CGTTTCTCTACTGAAGGCCCA 59.725 52.381 0.00 0.00 0.00 5.36
101 102 2.701107 GTTTCTCTACTGAAGGCCCAC 58.299 52.381 0.00 0.00 0.00 4.61
102 103 0.895530 TTCTCTACTGAAGGCCCACG 59.104 55.000 0.00 0.00 0.00 4.94
103 104 0.039180 TCTCTACTGAAGGCCCACGA 59.961 55.000 0.00 0.00 0.00 4.35
104 105 0.895530 CTCTACTGAAGGCCCACGAA 59.104 55.000 0.00 0.00 0.00 3.85
105 106 0.895530 TCTACTGAAGGCCCACGAAG 59.104 55.000 0.00 0.00 0.00 3.79
106 107 0.108138 CTACTGAAGGCCCACGAAGG 60.108 60.000 0.00 0.00 37.03 3.46
107 108 0.543410 TACTGAAGGCCCACGAAGGA 60.543 55.000 0.00 0.00 41.22 3.36
108 109 1.201429 ACTGAAGGCCCACGAAGGAT 61.201 55.000 0.00 0.00 41.22 3.24
109 110 0.830648 CTGAAGGCCCACGAAGGATA 59.169 55.000 0.00 0.00 41.22 2.59
110 111 1.417890 CTGAAGGCCCACGAAGGATAT 59.582 52.381 0.00 0.00 41.22 1.63
111 112 1.140852 TGAAGGCCCACGAAGGATATG 59.859 52.381 0.00 0.00 41.22 1.78
112 113 0.179018 AAGGCCCACGAAGGATATGC 60.179 55.000 0.00 0.00 41.22 3.14
113 114 1.056700 AGGCCCACGAAGGATATGCT 61.057 55.000 0.00 0.00 41.22 3.79
114 115 0.886490 GGCCCACGAAGGATATGCTG 60.886 60.000 0.00 0.00 41.22 4.41
115 116 1.510480 GCCCACGAAGGATATGCTGC 61.510 60.000 0.00 0.00 41.22 5.25
116 117 0.886490 CCCACGAAGGATATGCTGCC 60.886 60.000 0.00 0.00 41.22 4.85
117 118 0.886490 CCACGAAGGATATGCTGCCC 60.886 60.000 0.00 0.00 41.22 5.36
118 119 0.179048 CACGAAGGATATGCTGCCCA 60.179 55.000 0.00 0.00 0.00 5.36
119 120 0.767375 ACGAAGGATATGCTGCCCAT 59.233 50.000 0.00 0.00 37.97 4.00
120 121 1.162698 CGAAGGATATGCTGCCCATG 58.837 55.000 0.00 0.00 35.34 3.66
121 122 1.544093 CGAAGGATATGCTGCCCATGT 60.544 52.381 0.00 0.00 35.34 3.21
122 123 2.289631 CGAAGGATATGCTGCCCATGTA 60.290 50.000 0.00 0.00 35.34 2.29
123 124 3.341823 GAAGGATATGCTGCCCATGTAG 58.658 50.000 0.00 0.00 35.34 2.74
131 132 1.678101 GCTGCCCATGTAGCTTTTAGG 59.322 52.381 0.00 0.00 45.63 2.69
132 133 1.678101 CTGCCCATGTAGCTTTTAGGC 59.322 52.381 0.00 0.00 39.41 3.93
133 134 1.032794 GCCCATGTAGCTTTTAGGCC 58.967 55.000 0.00 0.00 32.68 5.19
134 135 1.692411 CCCATGTAGCTTTTAGGCCC 58.308 55.000 0.00 0.00 0.00 5.80
135 136 1.308998 CCATGTAGCTTTTAGGCCCG 58.691 55.000 0.00 0.00 0.00 6.13
136 137 1.308998 CATGTAGCTTTTAGGCCCGG 58.691 55.000 0.00 0.00 0.00 5.73
137 138 0.916809 ATGTAGCTTTTAGGCCCGGT 59.083 50.000 0.00 0.00 0.00 5.28
138 139 0.035820 TGTAGCTTTTAGGCCCGGTG 60.036 55.000 0.00 0.00 0.00 4.94
139 140 0.251073 GTAGCTTTTAGGCCCGGTGA 59.749 55.000 0.00 0.00 0.00 4.02
140 141 0.251073 TAGCTTTTAGGCCCGGTGAC 59.749 55.000 0.00 0.00 0.00 3.67
141 142 1.302993 GCTTTTAGGCCCGGTGACA 60.303 57.895 0.00 0.00 0.00 3.58
142 143 0.891904 GCTTTTAGGCCCGGTGACAA 60.892 55.000 0.00 0.00 0.00 3.18
143 144 1.611519 CTTTTAGGCCCGGTGACAAA 58.388 50.000 0.00 0.00 0.00 2.83
144 145 1.268625 CTTTTAGGCCCGGTGACAAAC 59.731 52.381 0.00 0.00 0.00 2.93
145 146 0.183014 TTTAGGCCCGGTGACAAACA 59.817 50.000 0.00 0.00 0.00 2.83
146 147 0.402504 TTAGGCCCGGTGACAAACAT 59.597 50.000 0.00 0.00 0.00 2.71
147 148 0.322098 TAGGCCCGGTGACAAACATG 60.322 55.000 0.00 0.00 0.00 3.21
148 149 1.602323 GGCCCGGTGACAAACATGA 60.602 57.895 0.00 0.00 0.00 3.07
149 150 1.586154 GGCCCGGTGACAAACATGAG 61.586 60.000 0.00 0.00 0.00 2.90
150 151 0.605319 GCCCGGTGACAAACATGAGA 60.605 55.000 0.00 0.00 0.00 3.27
151 152 1.890876 CCCGGTGACAAACATGAGAA 58.109 50.000 0.00 0.00 0.00 2.87
152 153 2.226330 CCCGGTGACAAACATGAGAAA 58.774 47.619 0.00 0.00 0.00 2.52
153 154 2.819608 CCCGGTGACAAACATGAGAAAT 59.180 45.455 0.00 0.00 0.00 2.17
154 155 3.366273 CCCGGTGACAAACATGAGAAATG 60.366 47.826 0.00 0.00 0.00 2.32
155 156 3.366273 CCGGTGACAAACATGAGAAATGG 60.366 47.826 0.00 0.00 0.00 3.16
156 157 3.366273 CGGTGACAAACATGAGAAATGGG 60.366 47.826 0.00 0.00 0.00 4.00
157 158 3.826157 GGTGACAAACATGAGAAATGGGA 59.174 43.478 0.00 0.00 0.00 4.37
158 159 4.321230 GGTGACAAACATGAGAAATGGGAC 60.321 45.833 0.00 0.00 0.00 4.46
170 171 2.861730 TGGGACAGGCCTCTGAGA 59.138 61.111 0.00 0.00 43.49 3.27
171 172 1.305633 TGGGACAGGCCTCTGAGAG 60.306 63.158 0.00 1.57 43.49 3.20
172 173 1.000993 GGGACAGGCCTCTGAGAGA 59.999 63.158 11.82 0.00 43.49 3.10
173 174 0.616111 GGGACAGGCCTCTGAGAGAA 60.616 60.000 11.82 0.00 43.49 2.87
174 175 0.534873 GGACAGGCCTCTGAGAGAAC 59.465 60.000 11.82 3.08 43.49 3.01
175 176 0.172352 GACAGGCCTCTGAGAGAACG 59.828 60.000 11.82 0.00 43.49 3.95
176 177 1.153667 CAGGCCTCTGAGAGAACGC 60.154 63.158 11.82 5.83 43.49 4.84
177 178 1.607756 AGGCCTCTGAGAGAACGCA 60.608 57.895 11.82 0.00 0.00 5.24
178 179 1.188219 AGGCCTCTGAGAGAACGCAA 61.188 55.000 11.82 0.00 0.00 4.85
179 180 0.320771 GGCCTCTGAGAGAACGCAAA 60.321 55.000 11.82 0.00 0.00 3.68
180 181 0.793250 GCCTCTGAGAGAACGCAAAC 59.207 55.000 11.82 0.00 0.00 2.93
182 183 0.436531 CTCTGAGAGAACGCAAACGC 59.563 55.000 2.60 0.00 45.53 4.84
255 256 2.105466 GCTGCCGAGGCTTCTTCTG 61.105 63.158 15.75 0.00 42.51 3.02
267 268 2.046023 CTTCTGCCCGTCATGCCA 60.046 61.111 0.00 0.00 0.00 4.92
289 290 0.390860 GCCACTGATATGCGTCTCCT 59.609 55.000 0.00 0.00 0.00 3.69
297 298 0.178987 TATGCGTCTCCTCCTCCTCC 60.179 60.000 0.00 0.00 0.00 4.30
307 308 1.127343 CTCCTCCTCCCCATCTTCAC 58.873 60.000 0.00 0.00 0.00 3.18
314 315 2.892425 CCCATCTTCACGCCTCGC 60.892 66.667 0.00 0.00 0.00 5.03
331 1058 2.096406 CGCCTGCGTTCAACATCG 59.904 61.111 2.83 0.00 34.35 3.84
377 1111 1.531578 GAGGTCGAAAGCCAAGTCAAC 59.468 52.381 0.00 0.00 0.00 3.18
380 1114 0.181587 TCGAAAGCCAAGTCAACCCA 59.818 50.000 0.00 0.00 0.00 4.51
470 1216 5.428253 TGCGAGAATTTCCTAGCATACTTT 58.572 37.500 6.86 0.00 39.31 2.66
481 1227 5.104652 TCCTAGCATACTTTCTGTTAACCCC 60.105 44.000 2.48 0.00 0.00 4.95
525 1271 5.220453 GCTCACCAATTTCAGTTTTGTTGTG 60.220 40.000 0.00 0.00 0.00 3.33
527 1273 4.934602 CACCAATTTCAGTTTTGTTGTGGT 59.065 37.500 0.00 0.00 37.32 4.16
528 1274 5.411053 CACCAATTTCAGTTTTGTTGTGGTT 59.589 36.000 0.00 0.00 34.67 3.67
529 1275 5.411053 ACCAATTTCAGTTTTGTTGTGGTTG 59.589 36.000 0.00 0.00 33.06 3.77
532 1278 4.855715 TTCAGTTTTGTTGTGGTTGTGA 57.144 36.364 0.00 0.00 0.00 3.58
533 1279 4.855715 TCAGTTTTGTTGTGGTTGTGAA 57.144 36.364 0.00 0.00 0.00 3.18
534 1280 4.804108 TCAGTTTTGTTGTGGTTGTGAAG 58.196 39.130 0.00 0.00 0.00 3.02
546 1307 3.054287 TGGTTGTGAAGTGTGAACCCTTA 60.054 43.478 0.00 0.00 37.63 2.69
588 1349 4.385825 TGTACTTGTGAACCCTTGCTTAG 58.614 43.478 0.00 0.00 0.00 2.18
654 1415 1.723608 TTTGACTGGTTGCCGTGCAG 61.724 55.000 0.00 0.00 40.61 4.41
665 1426 2.425592 CGTGCAGGTCCAAGTCCA 59.574 61.111 0.00 0.00 0.00 4.02
680 1441 2.271821 CCACGGATCCACATGGCA 59.728 61.111 13.41 0.00 34.44 4.92
744 1505 1.305930 GCAAATCGGGACAGGTGACC 61.306 60.000 0.00 0.00 0.00 4.02
782 1546 2.636647 TGATTCAGTCAGGCAACACA 57.363 45.000 0.00 0.00 41.41 3.72
850 1618 3.680786 CACCACGGAGACCTCGCA 61.681 66.667 0.00 0.00 0.00 5.10
866 1634 0.859232 CGCAGTCTTGTGTACACACC 59.141 55.000 27.91 17.80 45.88 4.16
885 1656 3.881688 CACCTGCCTTTCCTATCAATCAG 59.118 47.826 0.00 0.00 0.00 2.90
1005 1781 0.739462 TACCTCGCACATTTGAGCCG 60.739 55.000 0.00 0.00 0.00 5.52
1109 1915 6.423182 TCCCTGTTTTTATCCTCCTGTTATG 58.577 40.000 0.00 0.00 0.00 1.90
1119 1925 4.934356 TCCTCCTGTTATGGATTTGCTTT 58.066 39.130 0.00 0.00 35.30 3.51
1199 2008 3.499338 TCTCAAATGGTGGCATCTTTGT 58.501 40.909 16.70 1.01 31.98 2.83
1336 2147 1.950954 GCAGCTCCCCTGGTAAGTTTC 60.951 57.143 0.00 0.00 42.03 2.78
1338 2149 1.909986 AGCTCCCCTGGTAAGTTTCTC 59.090 52.381 0.00 0.00 0.00 2.87
1707 2536 0.248336 CTGCGCTCGACGGTGTATTA 60.248 55.000 9.73 0.00 43.93 0.98
1731 2564 2.229675 TCGCCATGTATCAGAGCAAG 57.770 50.000 0.00 0.00 0.00 4.01
1761 2594 4.247258 CCATCATGTCCCAAACAATTGTG 58.753 43.478 12.82 0.00 42.37 3.33
1871 2704 3.052082 CCTGGCGTGGAACAGCAG 61.052 66.667 0.00 0.00 41.80 4.24
2008 2841 4.513442 CCTCGATGGATTTGAACCTGTTA 58.487 43.478 0.00 0.00 38.35 2.41
2137 2970 5.809001 ACATCAGGAATAGAAGCTTTGACA 58.191 37.500 0.00 0.00 0.00 3.58
2350 3197 2.496871 TCATTGCCCACCTTATTGCTTG 59.503 45.455 0.00 0.00 0.00 4.01
2377 3231 3.555956 GTGTGATGGATTGCCTACTAACG 59.444 47.826 0.00 0.00 34.31 3.18
2475 3344 7.544566 CGGTAGTTACAGTTATGTTCAGTTGAT 59.455 37.037 0.00 0.00 41.01 2.57
2496 3366 2.030893 TCTTTCTTCCGCATTTGTGCTG 60.031 45.455 0.00 0.00 0.00 4.41
2620 3516 1.938585 TACCTGGTCTGTTCTCCCTG 58.061 55.000 0.63 0.00 0.00 4.45
2646 3542 3.002246 TGCATCAAAGTCAGACGTGTTTC 59.998 43.478 0.00 0.00 0.00 2.78
2690 3587 6.985188 TCCTATAAGTTGCAACATCTTCAC 57.015 37.500 30.11 2.25 0.00 3.18
2701 3598 4.790766 GCAACATCTTCACCAGTGTTTCTG 60.791 45.833 0.00 0.00 43.27 3.02
2717 3624 8.971321 CAGTGTTTCTGAATTTTACCATTTCAG 58.029 33.333 5.72 5.72 46.27 3.02
2725 3632 9.643693 CTGAATTTTACCATTTCAGCTGTAAAT 57.356 29.630 14.67 14.59 39.73 1.40
2903 4094 9.968870 CTTCAATCTACCCTTGTATAGTAAGTC 57.031 37.037 0.00 0.00 0.00 3.01
3033 4267 1.423395 CAAGTCGAGAGGTTGAGCAC 58.577 55.000 0.00 0.00 0.00 4.40
3047 4281 5.415701 AGGTTGAGCACGATTCAATTATGTT 59.584 36.000 0.00 0.00 36.96 2.71
3084 4318 8.640651 TGCCATGTTAATGCATTAGTGATTAAT 58.359 29.630 18.13 4.56 31.93 1.40
3143 4386 3.157727 GGCACCCATGAATTTTGCC 57.842 52.632 0.00 0.59 45.64 4.52
3147 4390 2.616001 GCACCCATGAATTTTGCCATGT 60.616 45.455 0.00 0.00 38.69 3.21
3168 4411 3.319122 GTCAGAACAACTGGGCAATTCTT 59.681 43.478 0.00 0.00 45.76 2.52
3225 4475 7.611079 TGTGGATTAACTTCAATGACATCATCA 59.389 33.333 0.00 0.00 43.13 3.07
3315 4569 7.065803 AGGTAACATTTCACTTGGACGATTATG 59.934 37.037 0.00 0.00 41.41 1.90
3434 4695 6.830324 CCAAGTATTCTGATCAAGGAATGGAA 59.170 38.462 16.55 7.01 34.52 3.53
3715 4976 1.892474 GCTTGATTGGCCAACAAGGTA 59.108 47.619 35.60 15.56 43.48 3.08
3924 5185 5.909621 TGTTGGGACATAGTGAGTAGTAC 57.090 43.478 0.00 0.00 39.30 2.73
3930 5191 5.072872 GGGACATAGTGAGTAGTACCTCCTA 59.927 48.000 0.00 0.00 32.06 2.94
3938 5207 6.098695 AGTGAGTAGTACCTCCTACACTAGAG 59.901 46.154 0.00 0.00 39.84 2.43
4004 6127 3.523606 TTGTGCACTTGCTTGTGAAAT 57.476 38.095 19.41 0.00 42.66 2.17
4129 6257 1.338105 TGGGTTGAAGATCAGCTCACG 60.338 52.381 0.00 0.00 33.02 4.35
4134 6262 0.820871 GAAGATCAGCTCACGTCCCT 59.179 55.000 0.00 0.00 0.00 4.20
4145 6285 3.821600 GCTCACGTCCCTATCTTATGAGA 59.178 47.826 2.63 0.00 35.22 3.27
4154 6294 4.461081 CCCTATCTTATGAGAGACTTCCCG 59.539 50.000 2.00 0.00 33.66 5.14
4181 6321 8.478775 ACCTCATAGATTATGTAAGTGCTACA 57.521 34.615 0.00 0.00 44.65 2.74
4192 6332 6.458232 TGTAAGTGCTACAAAACCAAATGT 57.542 33.333 0.00 0.00 37.58 2.71
4198 6338 5.173131 GTGCTACAAAACCAAATGTTTCGAG 59.827 40.000 0.00 0.00 46.39 4.04
4203 6343 6.159988 ACAAAACCAAATGTTTCGAGTTTGA 58.840 32.000 12.99 0.00 46.39 2.69
4228 6395 5.347342 CAACTCAAGTACAACATGGCAAAA 58.653 37.500 0.00 0.00 0.00 2.44
4230 6404 5.348164 ACTCAAGTACAACATGGCAAAAAC 58.652 37.500 0.00 0.00 0.00 2.43
4232 6406 5.724328 TCAAGTACAACATGGCAAAAACAA 58.276 33.333 0.00 0.00 0.00 2.83
4267 6444 1.617804 CCCATCACCATGTTTCAGGCT 60.618 52.381 0.00 0.00 0.00 4.58
4338 6515 2.473816 TCTGAAGAGTTGTTCACTGCG 58.526 47.619 0.00 0.00 35.01 5.18
4348 6525 1.286501 GTTCACTGCGTCAAGTGTCA 58.713 50.000 12.63 2.06 46.33 3.58
4684 6877 3.818787 CAGGTGGCGCTCCAATGC 61.819 66.667 20.23 0.00 45.53 3.56
4685 6878 4.349503 AGGTGGCGCTCCAATGCA 62.350 61.111 20.23 0.00 45.53 3.96
4686 6879 3.372730 GGTGGCGCTCCAATGCAA 61.373 61.111 7.64 0.00 45.53 4.08
4687 6880 2.180017 GTGGCGCTCCAATGCAAG 59.820 61.111 7.64 0.00 45.53 4.01
4691 6884 4.183686 CGCTCCAATGCAAGCCGG 62.184 66.667 0.00 0.00 35.00 6.13
4694 6887 1.312371 GCTCCAATGCAAGCCGGTTA 61.312 55.000 1.90 0.00 32.22 2.85
4709 6902 3.828786 CCGGTTAAAATTACTGGTGTGC 58.171 45.455 0.00 0.00 37.29 4.57
4711 6904 4.472286 CGGTTAAAATTACTGGTGTGCTG 58.528 43.478 0.00 0.00 0.00 4.41
4712 6905 4.214545 CGGTTAAAATTACTGGTGTGCTGA 59.785 41.667 0.00 0.00 0.00 4.26
4714 6907 5.009210 GGTTAAAATTACTGGTGTGCTGACA 59.991 40.000 0.00 0.00 0.00 3.58
4766 6959 2.030540 GCTCAAATGCAACTGAAGCTGA 60.031 45.455 0.00 0.00 0.00 4.26
4769 6962 3.633525 TCAAATGCAACTGAAGCTGAACT 59.366 39.130 0.00 0.00 0.00 3.01
4831 7024 2.906897 CACACGCACCCAGCCTTT 60.907 61.111 0.00 0.00 41.38 3.11
4832 7025 2.906897 ACACGCACCCAGCCTTTG 60.907 61.111 0.00 0.00 41.38 2.77
4833 7026 4.347453 CACGCACCCAGCCTTTGC 62.347 66.667 0.00 0.00 41.38 3.68
4845 7038 2.643933 GCCTTTGCTGGAAACTGATC 57.356 50.000 0.00 0.00 33.53 2.92
4846 7039 1.135575 GCCTTTGCTGGAAACTGATCG 60.136 52.381 0.00 0.00 33.53 3.69
4847 7040 1.135575 CCTTTGCTGGAAACTGATCGC 60.136 52.381 0.00 0.00 0.00 4.58
4848 7041 1.808945 CTTTGCTGGAAACTGATCGCT 59.191 47.619 0.00 0.00 0.00 4.93
4849 7042 1.442769 TTGCTGGAAACTGATCGCTC 58.557 50.000 0.00 0.00 0.00 5.03
4850 7043 0.610174 TGCTGGAAACTGATCGCTCT 59.390 50.000 0.00 0.00 0.00 4.09
4851 7044 1.002430 TGCTGGAAACTGATCGCTCTT 59.998 47.619 0.00 0.00 0.00 2.85
4863 7056 2.370281 TCGCTCTTCTGATGTCCAAC 57.630 50.000 0.00 0.00 0.00 3.77
4877 7070 2.225091 TGTCCAACCCATTCTCTTGCAT 60.225 45.455 0.00 0.00 0.00 3.96
4893 7086 3.793797 TGCATGCTGAAAATCCATCAG 57.206 42.857 20.33 0.00 45.65 2.90
4898 7091 5.291128 GCATGCTGAAAATCCATCAGAAAAG 59.709 40.000 11.37 0.00 45.74 2.27
4916 7109 1.076438 AGGGTCAAAAGGGAGGGAAG 58.924 55.000 0.00 0.00 0.00 3.46
4923 7116 0.103337 AAAGGGAGGGAAGGGAGGTT 60.103 55.000 0.00 0.00 0.00 3.50
4926 7119 2.231380 GGAGGGAAGGGAGGTTGCA 61.231 63.158 0.00 0.00 0.00 4.08
4931 7124 1.177401 GGAAGGGAGGTTGCACATTC 58.823 55.000 0.00 0.00 0.00 2.67
4938 7131 2.076863 GAGGTTGCACATTCGTTAGCT 58.923 47.619 0.00 0.00 0.00 3.32
4954 7160 5.358725 TCGTTAGCTATCCGAATATATGCCA 59.641 40.000 12.14 0.00 0.00 4.92
4957 7163 8.029522 CGTTAGCTATCCGAATATATGCCATAT 58.970 37.037 2.25 2.25 0.00 1.78
4959 7165 6.705302 AGCTATCCGAATATATGCCATATGG 58.295 40.000 18.07 18.07 38.53 2.74
4975 7181 7.669427 TGCCATATGGAAAATATTTCATGACC 58.331 34.615 26.47 1.65 35.47 4.02
5087 7293 9.793252 AAAAGCTCACATGCAACTATAATTTAG 57.207 29.630 0.00 0.00 34.99 1.85
5088 7294 6.963796 AGCTCACATGCAACTATAATTTAGC 58.036 36.000 0.00 0.00 34.99 3.09
5089 7295 6.016777 AGCTCACATGCAACTATAATTTAGCC 60.017 38.462 0.00 0.00 34.99 3.93
5090 7296 6.238731 GCTCACATGCAACTATAATTTAGCCA 60.239 38.462 0.00 0.00 0.00 4.75
5091 7297 7.522725 GCTCACATGCAACTATAATTTAGCCAT 60.523 37.037 0.00 0.00 0.00 4.40
5092 7298 7.650890 TCACATGCAACTATAATTTAGCCATG 58.349 34.615 0.00 0.00 0.00 3.66
5093 7299 6.364165 CACATGCAACTATAATTTAGCCATGC 59.636 38.462 0.00 0.00 0.00 4.06
5094 7300 5.107109 TGCAACTATAATTTAGCCATGCG 57.893 39.130 0.00 0.00 34.16 4.73
5095 7301 4.023279 TGCAACTATAATTTAGCCATGCGG 60.023 41.667 0.00 0.00 34.16 5.69
5096 7302 4.215399 GCAACTATAATTTAGCCATGCGGA 59.785 41.667 0.00 0.00 0.00 5.54
5097 7303 5.278266 GCAACTATAATTTAGCCATGCGGAA 60.278 40.000 0.00 0.00 0.00 4.30
5098 7304 6.373779 CAACTATAATTTAGCCATGCGGAAG 58.626 40.000 0.00 0.00 0.00 3.46
5099 7305 5.865085 ACTATAATTTAGCCATGCGGAAGA 58.135 37.500 0.00 0.00 0.00 2.87
5100 7306 6.296026 ACTATAATTTAGCCATGCGGAAGAA 58.704 36.000 0.00 0.00 0.00 2.52
5101 7307 6.942576 ACTATAATTTAGCCATGCGGAAGAAT 59.057 34.615 0.00 0.00 0.00 2.40
5102 7308 4.574599 AATTTAGCCATGCGGAAGAATC 57.425 40.909 0.00 0.00 0.00 2.52
5103 7309 2.708216 TTAGCCATGCGGAAGAATCA 57.292 45.000 0.00 0.00 0.00 2.57
5104 7310 2.936919 TAGCCATGCGGAAGAATCAT 57.063 45.000 0.00 0.00 0.00 2.45
5105 7311 2.062971 AGCCATGCGGAAGAATCATT 57.937 45.000 0.00 0.00 0.00 2.57
5106 7312 1.679680 AGCCATGCGGAAGAATCATTG 59.320 47.619 0.00 0.00 0.00 2.82
5107 7313 1.406539 GCCATGCGGAAGAATCATTGT 59.593 47.619 0.00 0.00 0.00 2.71
5108 7314 2.542411 GCCATGCGGAAGAATCATTGTC 60.542 50.000 0.00 0.00 0.00 3.18
5109 7315 2.286595 CCATGCGGAAGAATCATTGTCG 60.287 50.000 0.00 0.00 0.00 4.35
5110 7316 2.093306 TGCGGAAGAATCATTGTCGT 57.907 45.000 0.00 0.00 0.00 4.34
5111 7317 1.731709 TGCGGAAGAATCATTGTCGTG 59.268 47.619 0.00 0.00 0.00 4.35
5112 7318 1.999735 GCGGAAGAATCATTGTCGTGA 59.000 47.619 0.00 0.00 0.00 4.35
5113 7319 2.222819 GCGGAAGAATCATTGTCGTGAC 60.223 50.000 0.00 0.00 0.00 3.67
5114 7320 2.348666 CGGAAGAATCATTGTCGTGACC 59.651 50.000 0.00 0.00 0.00 4.02
5115 7321 3.600388 GGAAGAATCATTGTCGTGACCT 58.400 45.455 0.00 0.00 0.00 3.85
5116 7322 4.003648 GGAAGAATCATTGTCGTGACCTT 58.996 43.478 0.00 0.00 31.32 3.50
5117 7323 4.142816 GGAAGAATCATTGTCGTGACCTTG 60.143 45.833 0.00 0.00 29.85 3.61
5118 7324 4.271696 AGAATCATTGTCGTGACCTTGA 57.728 40.909 0.00 1.49 0.00 3.02
5119 7325 3.997021 AGAATCATTGTCGTGACCTTGAC 59.003 43.478 0.00 0.00 35.67 3.18
5120 7326 2.163818 TCATTGTCGTGACCTTGACC 57.836 50.000 0.00 0.00 34.18 4.02
5121 7327 1.414550 TCATTGTCGTGACCTTGACCA 59.585 47.619 0.00 0.00 34.18 4.02
5122 7328 2.158885 TCATTGTCGTGACCTTGACCAA 60.159 45.455 0.00 0.00 34.18 3.67
5123 7329 2.404923 TTGTCGTGACCTTGACCAAA 57.595 45.000 0.00 0.00 34.18 3.28
5124 7330 2.404923 TGTCGTGACCTTGACCAAAA 57.595 45.000 0.00 0.00 34.18 2.44
5125 7331 2.712709 TGTCGTGACCTTGACCAAAAA 58.287 42.857 0.00 0.00 34.18 1.94
5238 7444 5.488341 GAAGCCCAGTTACAGATGTAAGAA 58.512 41.667 5.68 0.00 40.74 2.52
5243 7449 6.430000 GCCCAGTTACAGATGTAAGAAAGAAA 59.570 38.462 5.68 0.00 40.74 2.52
5282 7492 3.244422 ACATGGGACTACTCGCAAAAGAA 60.244 43.478 0.00 0.00 42.26 2.52
5532 7743 1.283321 GAGGAGGAGAAGGCAAACCAT 59.717 52.381 0.00 0.00 39.06 3.55
5565 7776 3.616560 CGAAAGGGCACTTTAGCAGTAGA 60.617 47.826 15.39 0.00 46.51 2.59
5727 7938 0.325933 CATCCCAGACCTTGTGCAGA 59.674 55.000 0.00 0.00 0.00 4.26
5728 7939 0.326264 ATCCCAGACCTTGTGCAGAC 59.674 55.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.550678 GTCGGGAGCAACTAATTAACGAG 59.449 47.826 0.00 0.00 0.00 4.18
1 2 3.056678 TGTCGGGAGCAACTAATTAACGA 60.057 43.478 0.00 0.00 0.00 3.85
2 3 3.255725 TGTCGGGAGCAACTAATTAACG 58.744 45.455 0.00 0.00 0.00 3.18
3 4 4.501071 TCTGTCGGGAGCAACTAATTAAC 58.499 43.478 0.00 0.00 0.00 2.01
4 5 4.811969 TCTGTCGGGAGCAACTAATTAA 57.188 40.909 0.00 0.00 0.00 1.40
5 6 4.161565 ACATCTGTCGGGAGCAACTAATTA 59.838 41.667 0.00 0.00 0.00 1.40
6 7 3.055094 ACATCTGTCGGGAGCAACTAATT 60.055 43.478 0.00 0.00 0.00 1.40
7 8 2.501723 ACATCTGTCGGGAGCAACTAAT 59.498 45.455 0.00 0.00 0.00 1.73
9 10 1.476891 GACATCTGTCGGGAGCAACTA 59.523 52.381 0.00 0.00 35.12 2.24
10 11 0.247736 GACATCTGTCGGGAGCAACT 59.752 55.000 0.00 0.00 35.12 3.16
11 12 2.755929 GACATCTGTCGGGAGCAAC 58.244 57.895 0.00 0.00 35.12 4.17
40 41 4.835615 TCTTGCATTTGCTACCCCTAAAAA 59.164 37.500 3.94 0.00 42.66 1.94
41 42 4.411927 TCTTGCATTTGCTACCCCTAAAA 58.588 39.130 3.94 0.00 42.66 1.52
42 43 4.016444 CTCTTGCATTTGCTACCCCTAAA 58.984 43.478 3.94 0.00 42.66 1.85
43 44 3.265737 TCTCTTGCATTTGCTACCCCTAA 59.734 43.478 3.94 0.00 42.66 2.69
44 45 2.843730 TCTCTTGCATTTGCTACCCCTA 59.156 45.455 3.94 0.00 42.66 3.53
45 46 1.635487 TCTCTTGCATTTGCTACCCCT 59.365 47.619 3.94 0.00 42.66 4.79
46 47 2.019984 CTCTCTTGCATTTGCTACCCC 58.980 52.381 3.94 0.00 42.66 4.95
47 48 1.403323 GCTCTCTTGCATTTGCTACCC 59.597 52.381 3.94 0.00 42.66 3.69
48 49 1.403323 GGCTCTCTTGCATTTGCTACC 59.597 52.381 3.94 0.00 42.66 3.18
49 50 2.363683 AGGCTCTCTTGCATTTGCTAC 58.636 47.619 3.94 0.00 42.66 3.58
50 51 2.795231 AGGCTCTCTTGCATTTGCTA 57.205 45.000 3.94 0.00 42.66 3.49
51 52 2.795231 TAGGCTCTCTTGCATTTGCT 57.205 45.000 3.94 0.00 42.66 3.91
52 53 4.615452 GCATATAGGCTCTCTTGCATTTGC 60.615 45.833 1.25 0.00 42.50 3.68
53 54 4.760715 AGCATATAGGCTCTCTTGCATTTG 59.239 41.667 5.96 0.00 41.05 2.32
54 55 4.760715 CAGCATATAGGCTCTCTTGCATTT 59.239 41.667 9.34 0.00 43.68 2.32
55 56 4.325119 CAGCATATAGGCTCTCTTGCATT 58.675 43.478 9.34 0.00 43.68 3.56
56 57 3.869140 GCAGCATATAGGCTCTCTTGCAT 60.869 47.826 9.34 0.00 43.68 3.96
57 58 2.549563 GCAGCATATAGGCTCTCTTGCA 60.550 50.000 9.34 0.00 43.68 4.08
58 59 2.075338 GCAGCATATAGGCTCTCTTGC 58.925 52.381 9.34 6.85 43.68 4.01
59 60 2.614987 GGGCAGCATATAGGCTCTCTTG 60.615 54.545 9.34 0.00 43.68 3.02
60 61 1.627834 GGGCAGCATATAGGCTCTCTT 59.372 52.381 9.34 0.00 43.68 2.85
61 62 1.274712 GGGCAGCATATAGGCTCTCT 58.725 55.000 9.34 0.00 43.68 3.10
62 63 0.108424 CGGGCAGCATATAGGCTCTC 60.108 60.000 9.34 4.34 43.68 3.20
63 64 0.833834 ACGGGCAGCATATAGGCTCT 60.834 55.000 9.34 0.00 43.68 4.09
64 65 0.035458 AACGGGCAGCATATAGGCTC 59.965 55.000 9.34 4.73 43.68 4.70
66 67 0.875059 GAAACGGGCAGCATATAGGC 59.125 55.000 0.00 0.00 0.00 3.93
67 68 2.037772 AGAGAAACGGGCAGCATATAGG 59.962 50.000 0.00 0.00 0.00 2.57
68 69 3.393089 AGAGAAACGGGCAGCATATAG 57.607 47.619 0.00 0.00 0.00 1.31
69 70 3.895656 AGTAGAGAAACGGGCAGCATATA 59.104 43.478 0.00 0.00 0.00 0.86
70 71 2.700897 AGTAGAGAAACGGGCAGCATAT 59.299 45.455 0.00 0.00 0.00 1.78
71 72 2.108168 AGTAGAGAAACGGGCAGCATA 58.892 47.619 0.00 0.00 0.00 3.14
72 73 0.905357 AGTAGAGAAACGGGCAGCAT 59.095 50.000 0.00 0.00 0.00 3.79
73 74 0.037326 CAGTAGAGAAACGGGCAGCA 60.037 55.000 0.00 0.00 0.00 4.41
74 75 0.246635 TCAGTAGAGAAACGGGCAGC 59.753 55.000 0.00 0.00 0.00 5.25
75 76 2.611518 CTTCAGTAGAGAAACGGGCAG 58.388 52.381 0.00 0.00 0.00 4.85
76 77 1.275291 CCTTCAGTAGAGAAACGGGCA 59.725 52.381 0.00 0.00 0.00 5.36
77 78 2.007547 GCCTTCAGTAGAGAAACGGGC 61.008 57.143 0.00 0.00 0.00 6.13
78 79 1.405661 GGCCTTCAGTAGAGAAACGGG 60.406 57.143 0.00 0.00 0.00 5.28
79 80 1.405661 GGGCCTTCAGTAGAGAAACGG 60.406 57.143 0.84 0.00 0.00 4.44
80 81 1.275291 TGGGCCTTCAGTAGAGAAACG 59.725 52.381 4.53 0.00 0.00 3.60
81 82 2.701107 GTGGGCCTTCAGTAGAGAAAC 58.299 52.381 4.53 0.00 0.00 2.78
82 83 1.275291 CGTGGGCCTTCAGTAGAGAAA 59.725 52.381 4.53 0.00 0.00 2.52
83 84 0.895530 CGTGGGCCTTCAGTAGAGAA 59.104 55.000 4.53 0.00 0.00 2.87
84 85 0.039180 TCGTGGGCCTTCAGTAGAGA 59.961 55.000 4.53 0.00 0.00 3.10
85 86 0.895530 TTCGTGGGCCTTCAGTAGAG 59.104 55.000 4.53 0.00 0.00 2.43
86 87 0.895530 CTTCGTGGGCCTTCAGTAGA 59.104 55.000 4.53 0.00 0.00 2.59
87 88 0.108138 CCTTCGTGGGCCTTCAGTAG 60.108 60.000 4.53 0.00 0.00 2.57
88 89 0.543410 TCCTTCGTGGGCCTTCAGTA 60.543 55.000 4.53 0.00 36.20 2.74
89 90 1.201429 ATCCTTCGTGGGCCTTCAGT 61.201 55.000 4.53 0.00 36.20 3.41
90 91 0.830648 TATCCTTCGTGGGCCTTCAG 59.169 55.000 4.53 0.00 36.20 3.02
91 92 1.140852 CATATCCTTCGTGGGCCTTCA 59.859 52.381 4.53 0.00 36.20 3.02
92 93 1.884235 CATATCCTTCGTGGGCCTTC 58.116 55.000 4.53 0.00 36.20 3.46
93 94 0.179018 GCATATCCTTCGTGGGCCTT 60.179 55.000 4.53 0.00 36.20 4.35
94 95 1.056700 AGCATATCCTTCGTGGGCCT 61.057 55.000 4.53 0.00 36.20 5.19
95 96 0.886490 CAGCATATCCTTCGTGGGCC 60.886 60.000 0.00 0.00 36.20 5.80
96 97 1.510480 GCAGCATATCCTTCGTGGGC 61.510 60.000 0.00 0.00 36.20 5.36
97 98 0.886490 GGCAGCATATCCTTCGTGGG 60.886 60.000 0.00 0.00 36.20 4.61
98 99 0.886490 GGGCAGCATATCCTTCGTGG 60.886 60.000 0.00 0.00 37.10 4.94
99 100 0.179048 TGGGCAGCATATCCTTCGTG 60.179 55.000 0.00 0.00 0.00 4.35
100 101 0.767375 ATGGGCAGCATATCCTTCGT 59.233 50.000 0.00 0.00 0.00 3.85
101 102 1.162698 CATGGGCAGCATATCCTTCG 58.837 55.000 0.00 0.00 0.00 3.79
102 103 2.283145 ACATGGGCAGCATATCCTTC 57.717 50.000 0.00 0.00 0.00 3.46
103 104 2.553904 GCTACATGGGCAGCATATCCTT 60.554 50.000 10.35 0.00 37.73 3.36
104 105 1.004044 GCTACATGGGCAGCATATCCT 59.996 52.381 10.35 0.00 37.73 3.24
105 106 1.004044 AGCTACATGGGCAGCATATCC 59.996 52.381 15.77 0.00 40.36 2.59
106 107 2.486472 AGCTACATGGGCAGCATATC 57.514 50.000 15.77 0.00 40.36 1.63
107 108 2.965671 AAGCTACATGGGCAGCATAT 57.034 45.000 15.77 2.58 40.36 1.78
108 109 2.734755 AAAGCTACATGGGCAGCATA 57.265 45.000 15.77 0.00 40.36 3.14
109 110 1.856629 AAAAGCTACATGGGCAGCAT 58.143 45.000 15.77 4.12 40.36 3.79
110 111 2.368439 CTAAAAGCTACATGGGCAGCA 58.632 47.619 15.77 0.00 40.36 4.41
111 112 1.678101 CCTAAAAGCTACATGGGCAGC 59.322 52.381 13.84 10.90 38.09 5.25
112 113 1.678101 GCCTAAAAGCTACATGGGCAG 59.322 52.381 13.57 1.96 38.16 4.85
113 114 1.684869 GGCCTAAAAGCTACATGGGCA 60.685 52.381 18.21 0.00 39.79 5.36
114 115 1.032794 GGCCTAAAAGCTACATGGGC 58.967 55.000 10.95 10.95 37.61 5.36
115 116 1.692411 GGGCCTAAAAGCTACATGGG 58.308 55.000 0.84 0.00 0.00 4.00
116 117 1.308998 CGGGCCTAAAAGCTACATGG 58.691 55.000 0.84 0.00 0.00 3.66
117 118 1.308998 CCGGGCCTAAAAGCTACATG 58.691 55.000 0.84 0.00 0.00 3.21
118 119 0.916809 ACCGGGCCTAAAAGCTACAT 59.083 50.000 6.32 0.00 0.00 2.29
119 120 0.035820 CACCGGGCCTAAAAGCTACA 60.036 55.000 6.32 0.00 0.00 2.74
120 121 0.251073 TCACCGGGCCTAAAAGCTAC 59.749 55.000 6.32 0.00 0.00 3.58
121 122 0.251073 GTCACCGGGCCTAAAAGCTA 59.749 55.000 6.32 0.00 0.00 3.32
122 123 1.002502 GTCACCGGGCCTAAAAGCT 60.003 57.895 6.32 0.00 0.00 3.74
123 124 0.891904 TTGTCACCGGGCCTAAAAGC 60.892 55.000 6.32 0.00 0.00 3.51
124 125 1.268625 GTTTGTCACCGGGCCTAAAAG 59.731 52.381 6.32 0.00 0.00 2.27
125 126 1.320507 GTTTGTCACCGGGCCTAAAA 58.679 50.000 6.32 0.00 0.00 1.52
126 127 0.183014 TGTTTGTCACCGGGCCTAAA 59.817 50.000 6.32 0.00 0.00 1.85
127 128 0.402504 ATGTTTGTCACCGGGCCTAA 59.597 50.000 6.32 0.00 0.00 2.69
128 129 0.322098 CATGTTTGTCACCGGGCCTA 60.322 55.000 6.32 0.00 0.00 3.93
129 130 1.603455 CATGTTTGTCACCGGGCCT 60.603 57.895 6.32 0.00 0.00 5.19
130 131 1.586154 CTCATGTTTGTCACCGGGCC 61.586 60.000 6.32 0.00 0.00 5.80
131 132 0.605319 TCTCATGTTTGTCACCGGGC 60.605 55.000 6.32 0.00 0.00 6.13
132 133 1.890876 TTCTCATGTTTGTCACCGGG 58.109 50.000 6.32 0.00 0.00 5.73
133 134 3.366273 CCATTTCTCATGTTTGTCACCGG 60.366 47.826 0.00 0.00 0.00 5.28
134 135 3.366273 CCCATTTCTCATGTTTGTCACCG 60.366 47.826 0.00 0.00 0.00 4.94
135 136 3.826157 TCCCATTTCTCATGTTTGTCACC 59.174 43.478 0.00 0.00 0.00 4.02
136 137 4.278170 TGTCCCATTTCTCATGTTTGTCAC 59.722 41.667 0.00 0.00 0.00 3.67
137 138 4.468713 TGTCCCATTTCTCATGTTTGTCA 58.531 39.130 0.00 0.00 0.00 3.58
138 139 4.082571 CCTGTCCCATTTCTCATGTTTGTC 60.083 45.833 0.00 0.00 0.00 3.18
139 140 3.828451 CCTGTCCCATTTCTCATGTTTGT 59.172 43.478 0.00 0.00 0.00 2.83
140 141 3.367703 GCCTGTCCCATTTCTCATGTTTG 60.368 47.826 0.00 0.00 0.00 2.93
141 142 2.827921 GCCTGTCCCATTTCTCATGTTT 59.172 45.455 0.00 0.00 0.00 2.83
142 143 2.450476 GCCTGTCCCATTTCTCATGTT 58.550 47.619 0.00 0.00 0.00 2.71
143 144 1.341383 GGCCTGTCCCATTTCTCATGT 60.341 52.381 0.00 0.00 0.00 3.21
144 145 1.064166 AGGCCTGTCCCATTTCTCATG 60.064 52.381 3.11 0.00 34.51 3.07
145 146 1.213926 GAGGCCTGTCCCATTTCTCAT 59.786 52.381 12.00 0.00 34.51 2.90
146 147 0.620556 GAGGCCTGTCCCATTTCTCA 59.379 55.000 12.00 0.00 34.51 3.27
147 148 0.915364 AGAGGCCTGTCCCATTTCTC 59.085 55.000 12.00 0.00 34.51 2.87
148 149 0.622665 CAGAGGCCTGTCCCATTTCT 59.377 55.000 12.00 0.00 35.70 2.52
149 150 0.620556 TCAGAGGCCTGTCCCATTTC 59.379 55.000 12.00 0.00 41.16 2.17
150 151 0.622665 CTCAGAGGCCTGTCCCATTT 59.377 55.000 12.00 0.00 41.16 2.32
151 152 0.252881 TCTCAGAGGCCTGTCCCATT 60.253 55.000 12.00 0.00 41.16 3.16
152 153 0.690411 CTCTCAGAGGCCTGTCCCAT 60.690 60.000 12.00 0.00 41.16 4.00
153 154 1.305633 CTCTCAGAGGCCTGTCCCA 60.306 63.158 12.00 0.00 41.16 4.37
154 155 0.616111 TTCTCTCAGAGGCCTGTCCC 60.616 60.000 12.00 0.00 41.16 4.46
155 156 0.534873 GTTCTCTCAGAGGCCTGTCC 59.465 60.000 12.00 0.00 41.16 4.02
156 157 0.172352 CGTTCTCTCAGAGGCCTGTC 59.828 60.000 12.00 0.00 41.16 3.51
157 158 1.882989 GCGTTCTCTCAGAGGCCTGT 61.883 60.000 12.00 1.36 41.16 4.00
158 159 1.153667 GCGTTCTCTCAGAGGCCTG 60.154 63.158 12.00 0.00 41.74 4.85
159 160 1.188219 TTGCGTTCTCTCAGAGGCCT 61.188 55.000 3.86 3.86 0.00 5.19
160 161 0.320771 TTTGCGTTCTCTCAGAGGCC 60.321 55.000 0.57 0.00 0.00 5.19
161 162 0.793250 GTTTGCGTTCTCTCAGAGGC 59.207 55.000 0.57 0.00 0.00 4.70
162 163 1.063806 CGTTTGCGTTCTCTCAGAGG 58.936 55.000 0.57 0.00 0.00 3.69
163 164 0.436531 GCGTTTGCGTTCTCTCAGAG 59.563 55.000 0.00 0.00 40.81 3.35
164 165 2.517598 GCGTTTGCGTTCTCTCAGA 58.482 52.632 0.00 0.00 40.81 3.27
175 176 2.437343 CGACTCTCTCCGCGTTTGC 61.437 63.158 4.92 0.00 37.91 3.68
176 177 0.386858 TTCGACTCTCTCCGCGTTTG 60.387 55.000 4.92 0.00 0.00 2.93
177 178 0.386985 GTTCGACTCTCTCCGCGTTT 60.387 55.000 4.92 0.00 0.00 3.60
178 179 1.209640 GTTCGACTCTCTCCGCGTT 59.790 57.895 4.92 0.00 0.00 4.84
179 180 1.637478 GAGTTCGACTCTCTCCGCGT 61.637 60.000 4.92 0.00 41.88 6.01
180 181 1.061253 GAGTTCGACTCTCTCCGCG 59.939 63.158 0.00 0.00 41.88 6.46
181 182 1.061253 CGAGTTCGACTCTCTCCGC 59.939 63.158 12.82 0.00 42.92 5.54
182 183 1.061253 GCGAGTTCGACTCTCTCCG 59.939 63.158 5.60 4.44 42.92 4.63
183 184 1.430228 GGCGAGTTCGACTCTCTCC 59.570 63.158 5.60 11.03 45.57 3.71
271 272 1.000283 GGAGGAGACGCATATCAGTGG 60.000 57.143 0.00 0.00 0.00 4.00
289 290 0.687757 CGTGAAGATGGGGAGGAGGA 60.688 60.000 0.00 0.00 0.00 3.71
297 298 2.892425 GCGAGGCGTGAAGATGGG 60.892 66.667 0.00 0.00 0.00 4.00
314 315 2.096406 CGATGTTGAACGCAGGCG 59.904 61.111 12.71 12.71 46.03 5.52
407 1141 4.361971 AGGTGGAGCTCCGTCGGA 62.362 66.667 27.43 14.54 39.43 4.55
470 1216 1.270625 CGACAAGCAGGGGTTAACAGA 60.271 52.381 8.10 0.00 0.00 3.41
500 1246 3.705604 ACAAAACTGAAATTGGTGAGCG 58.294 40.909 0.00 0.00 0.00 5.03
505 1251 5.159273 ACCACAACAAAACTGAAATTGGT 57.841 34.783 0.00 0.00 0.00 3.67
525 1271 2.052782 AGGGTTCACACTTCACAACC 57.947 50.000 0.00 0.00 38.07 3.77
527 1273 4.497291 AGTAAGGGTTCACACTTCACAA 57.503 40.909 0.00 0.00 39.19 3.33
528 1274 4.196193 CAAGTAAGGGTTCACACTTCACA 58.804 43.478 0.00 0.00 39.19 3.58
529 1275 4.196971 ACAAGTAAGGGTTCACACTTCAC 58.803 43.478 0.00 0.00 39.19 3.18
532 1278 4.638865 GTCAACAAGTAAGGGTTCACACTT 59.361 41.667 0.00 0.00 43.10 3.16
533 1279 4.080526 AGTCAACAAGTAAGGGTTCACACT 60.081 41.667 0.00 0.00 0.00 3.55
534 1280 4.035208 CAGTCAACAAGTAAGGGTTCACAC 59.965 45.833 0.00 0.00 0.00 3.82
546 1307 1.210478 AGCCACAGTCAGTCAACAAGT 59.790 47.619 0.00 0.00 0.00 3.16
654 1415 1.221021 GGATCCGTGGACTTGGACC 59.779 63.158 0.00 0.00 37.02 4.46
665 1426 1.078214 CTGTGCCATGTGGATCCGT 60.078 57.895 7.39 0.00 37.39 4.69
680 1441 5.178252 CACTGTCGTCATGAAGAAAATCTGT 59.822 40.000 13.12 8.02 0.00 3.41
720 1481 2.745884 TGTCCCGATTTGCAGCCG 60.746 61.111 0.00 0.00 0.00 5.52
744 1505 0.886490 AAGCACAGAGAAACCCAGCG 60.886 55.000 0.00 0.00 0.00 5.18
782 1546 1.460305 AGGCTACATCATCCGGGCT 60.460 57.895 0.00 0.00 0.00 5.19
787 1555 5.674052 ATATCTCACAGGCTACATCATCC 57.326 43.478 0.00 0.00 0.00 3.51
789 1557 7.313740 AGAAATATCTCACAGGCTACATCAT 57.686 36.000 0.00 0.00 0.00 2.45
790 1558 6.737720 AGAAATATCTCACAGGCTACATCA 57.262 37.500 0.00 0.00 0.00 3.07
866 1634 3.484407 CCCTGATTGATAGGAAAGGCAG 58.516 50.000 0.00 0.00 37.52 4.85
885 1656 2.041153 CCACACAAAAGTCCAGCCC 58.959 57.895 0.00 0.00 0.00 5.19
945 1721 6.881065 TCTCAGAGTTTTGGTATTCCTGATTG 59.119 38.462 0.00 0.00 34.23 2.67
946 1722 6.881602 GTCTCAGAGTTTTGGTATTCCTGATT 59.118 38.462 0.00 0.00 34.23 2.57
947 1723 6.013379 TGTCTCAGAGTTTTGGTATTCCTGAT 60.013 38.462 0.00 0.00 34.23 2.90
948 1724 5.306937 TGTCTCAGAGTTTTGGTATTCCTGA 59.693 40.000 0.00 0.00 34.23 3.86
1005 1781 2.287248 GCTTCAGACTGTTTGCTTGGAC 60.287 50.000 1.59 0.00 0.00 4.02
1119 1925 1.447838 GCGATCCTCGGAGTTGCAA 60.448 57.895 4.02 0.00 40.84 4.08
1146 1952 0.392193 CGATGGAGAGTGGCTTTGCT 60.392 55.000 0.00 0.00 0.00 3.91
1199 2008 1.444933 TGGGGAGAAGAAGCCAAGAA 58.555 50.000 0.00 0.00 0.00 2.52
1336 2147 0.315251 TCAGAGCTGTTGGTCACGAG 59.685 55.000 0.00 0.00 42.66 4.18
1338 2149 1.067283 AGATCAGAGCTGTTGGTCACG 60.067 52.381 9.95 0.00 42.66 4.35
1400 2211 2.030805 GCTTCAGTGGTGATGTTGTTCC 60.031 50.000 0.00 0.00 30.85 3.62
1707 2536 2.223923 GCTCTGATACATGGCGAAGACT 60.224 50.000 0.00 0.00 34.59 3.24
1731 2564 0.181350 GGGACATGATGGGACCTGAC 59.819 60.000 0.00 0.00 0.00 3.51
1761 2594 3.574826 AGTAGAACTCACCACCTCTGTTC 59.425 47.826 0.00 0.00 37.76 3.18
1871 2704 6.705863 AGAAAACATCCCAAGATAATGAGC 57.294 37.500 0.00 0.00 0.00 4.26
2008 2841 4.846940 ACATCCTAGGGAAAAGTCAAGACT 59.153 41.667 9.46 0.00 38.18 3.24
2137 2970 0.457853 CTGCATTCTGCTGCGCATTT 60.458 50.000 12.24 0.00 45.31 2.32
2229 3071 1.929494 TCCCCCATCCAAACTAAGCAT 59.071 47.619 0.00 0.00 0.00 3.79
2350 3197 2.991250 AGGCAATCCATCACACAGTAC 58.009 47.619 0.00 0.00 33.74 2.73
2403 3267 8.752187 CCACCTTAGTAAACTTAGTGGTATACA 58.248 37.037 5.01 0.00 35.87 2.29
2475 3344 2.704725 GCACAAATGCGGAAGAAAGA 57.295 45.000 0.00 0.00 43.33 2.52
2496 3366 2.607282 CGACCTCACACTGTAACAGGAC 60.607 54.545 7.66 2.31 35.51 3.85
2567 3442 9.370126 GACTGATAATATATGCACGAACAAAAC 57.630 33.333 0.00 0.00 0.00 2.43
2620 3516 1.135859 CGTCTGACTTTGATGCAAGGC 60.136 52.381 6.21 0.00 0.00 4.35
2673 3569 3.067180 CACTGGTGAAGATGTTGCAACTT 59.933 43.478 28.61 23.00 0.00 2.66
2675 3571 2.358898 ACACTGGTGAAGATGTTGCAAC 59.641 45.455 22.83 22.83 0.00 4.17
2681 3578 4.422073 TCAGAAACACTGGTGAAGATGT 57.578 40.909 7.78 0.00 45.76 3.06
2690 3587 7.925483 TGAAATGGTAAAATTCAGAAACACTGG 59.075 33.333 0.00 0.00 45.76 4.00
2717 3624 6.943981 TCATGAGCACGTAAATATTTACAGC 58.056 36.000 28.93 28.57 42.34 4.40
2903 4094 6.203530 TGACTGCAAAAGACAACAGATAGAAG 59.796 38.462 0.00 0.00 34.25 2.85
3033 4267 6.092092 TGCACTTGGAAACATAATTGAATCG 58.908 36.000 0.00 0.00 42.32 3.34
3047 4281 1.340088 AACATGGCATGCACTTGGAA 58.660 45.000 26.70 0.00 0.00 3.53
3084 4318 9.231297 GCCTGCCAAGAATTAATATCAGTTATA 57.769 33.333 0.00 0.00 0.00 0.98
3102 4345 2.062777 TTTGGTGCTTGCCTGCCAA 61.063 52.632 8.50 8.50 39.00 4.52
3143 4386 1.608055 TGCCCAGTTGTTCTGACATG 58.392 50.000 0.00 0.00 46.27 3.21
3147 4390 3.228188 AGAATTGCCCAGTTGTTCTGA 57.772 42.857 0.00 0.00 46.27 3.27
3208 4458 4.586884 AGCAGTGATGATGTCATTGAAGT 58.413 39.130 0.00 0.00 44.76 3.01
3225 4475 2.093973 CAGAGAAACCATCCGTAGCAGT 60.094 50.000 0.00 0.00 0.00 4.40
3363 4624 1.601759 CACCTTCCAGTGTGCCCTG 60.602 63.158 0.00 0.00 32.89 4.45
3599 4860 5.536161 TGCTCCTTTGCTCAACTAAAGAATT 59.464 36.000 0.00 0.00 36.29 2.17
3606 4867 2.086869 GCATGCTCCTTTGCTCAACTA 58.913 47.619 11.37 0.00 35.95 2.24
3691 4952 3.514645 CTTGTTGGCCAATCAAGCATAC 58.485 45.455 30.45 16.29 33.51 2.39
3715 4976 5.850046 AGCTACCCCTTTGATTATGCTAT 57.150 39.130 0.00 0.00 0.00 2.97
3924 5185 4.038162 GCATGGTTACTCTAGTGTAGGAGG 59.962 50.000 4.93 0.00 34.22 4.30
3930 5191 9.953565 TTATTTTAAGCATGGTTACTCTAGTGT 57.046 29.630 16.65 2.57 0.00 3.55
3971 6093 7.881142 AGCAAGTGCACAAAATGTATTAGTTA 58.119 30.769 21.04 0.00 45.16 2.24
3980 6103 3.188492 TCACAAGCAAGTGCACAAAATG 58.812 40.909 21.04 12.99 45.16 2.32
4004 6127 3.818210 ACATGTAACCGCTGTTTGAATCA 59.182 39.130 0.00 0.00 35.87 2.57
4129 6257 5.479027 GGGAAGTCTCTCATAAGATAGGGAC 59.521 48.000 0.00 0.00 0.00 4.46
4134 6262 5.535406 GGTTCGGGAAGTCTCTCATAAGATA 59.465 44.000 0.00 0.00 0.00 1.98
4145 6285 3.383698 TCTATGAGGTTCGGGAAGTCT 57.616 47.619 0.00 0.00 0.00 3.24
4154 6294 9.413048 GTAGCACTTACATAATCTATGAGGTTC 57.587 37.037 0.75 0.00 39.45 3.62
4198 6338 5.554822 TGTTGTACTTGAGTTGGTCAAAC 57.445 39.130 0.00 0.00 44.83 2.93
4203 6343 2.884639 GCCATGTTGTACTTGAGTTGGT 59.115 45.455 0.00 0.00 0.00 3.67
4230 6404 9.621629 TGGTGATGGGTAATAAGTTAGTATTTG 57.378 33.333 0.00 0.00 0.00 2.32
4232 6406 9.793259 CATGGTGATGGGTAATAAGTTAGTATT 57.207 33.333 0.00 0.00 0.00 1.89
4247 6424 0.819582 GCCTGAAACATGGTGATGGG 59.180 55.000 0.00 0.00 33.39 4.00
4249 6426 2.094390 CCAAGCCTGAAACATGGTGATG 60.094 50.000 0.00 0.00 35.49 3.07
4250 6427 2.173519 CCAAGCCTGAAACATGGTGAT 58.826 47.619 0.00 0.00 0.00 3.06
4251 6428 1.144708 TCCAAGCCTGAAACATGGTGA 59.855 47.619 0.00 0.00 32.90 4.02
4252 6429 1.619654 TCCAAGCCTGAAACATGGTG 58.380 50.000 0.00 0.00 32.90 4.17
4267 6444 5.640158 TTCCTTCTTCCAGTAAGTTCCAA 57.360 39.130 0.00 0.00 36.51 3.53
4338 6515 2.553602 TGGATGCACAATGACACTTGAC 59.446 45.455 0.00 0.00 0.00 3.18
4348 6525 6.041182 ACAATAATGCTATGTGGATGCACAAT 59.959 34.615 24.45 14.46 39.63 2.71
4674 6867 4.183686 CCGGCTTGCATTGGAGCG 62.184 66.667 2.18 0.00 39.78 5.03
4682 6875 3.057174 CCAGTAATTTTAACCGGCTTGCA 60.057 43.478 0.00 0.00 0.00 4.08
4684 6877 4.022676 ACACCAGTAATTTTAACCGGCTTG 60.023 41.667 0.00 0.00 0.00 4.01
4685 6878 4.022676 CACACCAGTAATTTTAACCGGCTT 60.023 41.667 0.00 0.00 0.00 4.35
4686 6879 3.504520 CACACCAGTAATTTTAACCGGCT 59.495 43.478 0.00 0.00 0.00 5.52
4687 6880 3.828786 CACACCAGTAATTTTAACCGGC 58.171 45.455 0.00 0.00 0.00 6.13
4691 6884 6.067263 TGTCAGCACACCAGTAATTTTAAC 57.933 37.500 0.00 0.00 0.00 2.01
4694 6887 5.301551 TCAATGTCAGCACACCAGTAATTTT 59.698 36.000 0.00 0.00 34.48 1.82
4711 6904 8.316640 AGTTTATCAGTCAAAGACTCAATGTC 57.683 34.615 0.00 0.00 41.37 3.06
4712 6905 8.562892 CAAGTTTATCAGTCAAAGACTCAATGT 58.437 33.333 0.00 0.00 41.37 2.71
4714 6907 8.682936 ACAAGTTTATCAGTCAAAGACTCAAT 57.317 30.769 0.00 0.00 41.37 2.57
4766 6959 4.816925 GTCCTTCTTAACAAGCTGACAGTT 59.183 41.667 3.99 0.00 0.00 3.16
4769 6962 4.100963 TGAGTCCTTCTTAACAAGCTGACA 59.899 41.667 0.00 0.00 0.00 3.58
4781 6974 2.026449 CCAAGCCTGATGAGTCCTTCTT 60.026 50.000 0.00 0.00 0.00 2.52
4816 7009 4.347453 GCAAAGGCTGGGTGCGTG 62.347 66.667 2.77 0.00 44.05 5.34
4826 7019 1.135575 CGATCAGTTTCCAGCAAAGGC 60.136 52.381 0.00 0.00 41.61 4.35
4828 7021 1.808945 AGCGATCAGTTTCCAGCAAAG 59.191 47.619 0.00 0.00 0.00 2.77
4829 7022 1.806542 GAGCGATCAGTTTCCAGCAAA 59.193 47.619 0.00 0.00 0.00 3.68
4830 7023 1.002430 AGAGCGATCAGTTTCCAGCAA 59.998 47.619 2.38 0.00 0.00 3.91
4831 7024 0.610174 AGAGCGATCAGTTTCCAGCA 59.390 50.000 2.38 0.00 0.00 4.41
4832 7025 1.663135 GAAGAGCGATCAGTTTCCAGC 59.337 52.381 2.38 0.00 0.00 4.85
4833 7026 2.928757 CAGAAGAGCGATCAGTTTCCAG 59.071 50.000 2.38 0.00 0.00 3.86
4834 7027 2.562738 TCAGAAGAGCGATCAGTTTCCA 59.437 45.455 2.38 0.00 0.00 3.53
4835 7028 3.238108 TCAGAAGAGCGATCAGTTTCC 57.762 47.619 2.38 0.00 0.00 3.13
4836 7029 4.180057 ACATCAGAAGAGCGATCAGTTTC 58.820 43.478 2.38 0.00 0.00 2.78
4837 7030 4.180057 GACATCAGAAGAGCGATCAGTTT 58.820 43.478 2.38 0.00 0.00 2.66
4838 7031 3.430098 GGACATCAGAAGAGCGATCAGTT 60.430 47.826 2.38 0.00 0.00 3.16
4839 7032 2.100584 GGACATCAGAAGAGCGATCAGT 59.899 50.000 2.38 0.00 0.00 3.41
4840 7033 2.100418 TGGACATCAGAAGAGCGATCAG 59.900 50.000 2.38 0.00 0.00 2.90
4841 7034 2.102578 TGGACATCAGAAGAGCGATCA 58.897 47.619 2.38 0.00 0.00 2.92
4842 7035 2.863137 GTTGGACATCAGAAGAGCGATC 59.137 50.000 0.00 0.00 0.00 3.69
4843 7036 2.419297 GGTTGGACATCAGAAGAGCGAT 60.419 50.000 0.00 0.00 0.00 4.58
4844 7037 1.066858 GGTTGGACATCAGAAGAGCGA 60.067 52.381 0.00 0.00 0.00 4.93
4845 7038 1.363744 GGTTGGACATCAGAAGAGCG 58.636 55.000 0.00 0.00 0.00 5.03
4846 7039 1.003580 TGGGTTGGACATCAGAAGAGC 59.996 52.381 0.00 0.00 0.00 4.09
4847 7040 3.641434 ATGGGTTGGACATCAGAAGAG 57.359 47.619 0.00 0.00 0.00 2.85
4848 7041 3.588842 AGAATGGGTTGGACATCAGAAGA 59.411 43.478 0.00 0.00 0.00 2.87
4849 7042 3.944015 GAGAATGGGTTGGACATCAGAAG 59.056 47.826 0.00 0.00 0.00 2.85
4850 7043 3.588842 AGAGAATGGGTTGGACATCAGAA 59.411 43.478 0.00 0.00 0.00 3.02
4851 7044 3.184628 AGAGAATGGGTTGGACATCAGA 58.815 45.455 0.00 0.00 0.00 3.27
4863 7056 1.758936 TCAGCATGCAAGAGAATGGG 58.241 50.000 21.98 0.00 34.76 4.00
4877 7070 4.221262 CCCTTTTCTGATGGATTTTCAGCA 59.779 41.667 0.00 0.00 40.35 4.41
4893 7086 2.158370 TCCCTCCCTTTTGACCCTTTTC 60.158 50.000 0.00 0.00 0.00 2.29
4898 7091 0.039764 CCTTCCCTCCCTTTTGACCC 59.960 60.000 0.00 0.00 0.00 4.46
4916 7109 1.737793 CTAACGAATGTGCAACCTCCC 59.262 52.381 0.00 0.00 34.36 4.30
4923 7116 2.100087 TCGGATAGCTAACGAATGTGCA 59.900 45.455 18.03 0.00 33.21 4.57
4931 7124 5.588240 TGGCATATATTCGGATAGCTAACG 58.412 41.667 13.24 13.24 0.00 3.18
4983 7189 8.976353 AGCATTTACAATACCAAATCAATACCA 58.024 29.630 0.00 0.00 0.00 3.25
5019 7225 7.867305 TGTCAACATTAACCAAGTTTACAGA 57.133 32.000 0.00 0.00 29.22 3.41
5068 7274 6.364165 GCATGGCTAAATTATAGTTGCATGTG 59.636 38.462 0.00 0.00 0.00 3.21
5071 7277 5.335897 CCGCATGGCTAAATTATAGTTGCAT 60.336 40.000 0.00 0.00 0.00 3.96
5086 7292 1.679680 CAATGATTCTTCCGCATGGCT 59.320 47.619 0.00 0.00 34.14 4.75
5087 7293 1.406539 ACAATGATTCTTCCGCATGGC 59.593 47.619 0.00 0.00 34.14 4.40
5088 7294 2.286595 CGACAATGATTCTTCCGCATGG 60.287 50.000 0.00 0.00 0.00 3.66
5089 7295 2.352651 ACGACAATGATTCTTCCGCATG 59.647 45.455 0.00 0.00 0.00 4.06
5090 7296 2.352651 CACGACAATGATTCTTCCGCAT 59.647 45.455 0.00 0.00 0.00 4.73
5091 7297 1.731709 CACGACAATGATTCTTCCGCA 59.268 47.619 0.00 0.00 0.00 5.69
5092 7298 1.999735 TCACGACAATGATTCTTCCGC 59.000 47.619 0.00 0.00 0.00 5.54
5093 7299 2.348666 GGTCACGACAATGATTCTTCCG 59.651 50.000 0.00 0.00 0.00 4.30
5094 7300 3.600388 AGGTCACGACAATGATTCTTCC 58.400 45.455 0.00 0.00 0.00 3.46
5095 7301 4.690748 TCAAGGTCACGACAATGATTCTTC 59.309 41.667 0.00 0.00 0.00 2.87
5096 7302 4.452455 GTCAAGGTCACGACAATGATTCTT 59.548 41.667 7.22 0.00 32.65 2.52
5097 7303 3.997021 GTCAAGGTCACGACAATGATTCT 59.003 43.478 7.22 0.00 32.65 2.40
5098 7304 3.125316 GGTCAAGGTCACGACAATGATTC 59.875 47.826 7.22 1.95 33.66 2.52
5099 7305 3.074412 GGTCAAGGTCACGACAATGATT 58.926 45.455 7.22 0.00 33.66 2.57
5100 7306 2.038426 TGGTCAAGGTCACGACAATGAT 59.962 45.455 7.22 0.00 33.66 2.45
5101 7307 1.414550 TGGTCAAGGTCACGACAATGA 59.585 47.619 0.00 0.27 33.66 2.57
5102 7308 1.877637 TGGTCAAGGTCACGACAATG 58.122 50.000 0.00 0.00 33.66 2.82
5103 7309 2.631160 TTGGTCAAGGTCACGACAAT 57.369 45.000 0.00 0.00 33.66 2.71
5104 7310 2.404923 TTTGGTCAAGGTCACGACAA 57.595 45.000 0.00 0.00 33.66 3.18
5105 7311 2.404923 TTTTGGTCAAGGTCACGACA 57.595 45.000 0.00 0.00 33.66 4.35
5133 7339 8.334632 CGTTGGCTTGTCAAAAAGAAAAATTAT 58.665 29.630 0.00 0.00 0.00 1.28
5134 7340 7.201565 CCGTTGGCTTGTCAAAAAGAAAAATTA 60.202 33.333 0.00 0.00 0.00 1.40
5135 7341 6.403092 CCGTTGGCTTGTCAAAAAGAAAAATT 60.403 34.615 0.00 0.00 0.00 1.82
5136 7342 5.064579 CCGTTGGCTTGTCAAAAAGAAAAAT 59.935 36.000 0.00 0.00 0.00 1.82
5137 7343 4.390297 CCGTTGGCTTGTCAAAAAGAAAAA 59.610 37.500 0.00 0.00 0.00 1.94
5138 7344 3.929610 CCGTTGGCTTGTCAAAAAGAAAA 59.070 39.130 0.00 0.00 0.00 2.29
5139 7345 3.516615 CCGTTGGCTTGTCAAAAAGAAA 58.483 40.909 0.00 0.00 0.00 2.52
5140 7346 2.737039 GCCGTTGGCTTGTCAAAAAGAA 60.737 45.455 0.00 0.00 46.69 2.52
5141 7347 1.202359 GCCGTTGGCTTGTCAAAAAGA 60.202 47.619 0.00 0.00 46.69 2.52
5142 7348 1.208259 GCCGTTGGCTTGTCAAAAAG 58.792 50.000 0.00 0.00 46.69 2.27
5238 7444 3.973472 AGGTCTTCCCTGGTTTTTCTT 57.027 42.857 0.00 0.00 44.08 2.52
5243 7449 3.245264 CCATGTAAGGTCTTCCCTGGTTT 60.245 47.826 0.00 0.00 45.47 3.27
5632 7843 2.031163 GACAGCTGACCGCCTTGT 59.969 61.111 23.35 0.00 40.39 3.16



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.