Multiple sequence alignment - TraesCS2B01G567900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G567900 chr2B 100.000 2954 0 0 1 2954 758806949 758809902 0.000000e+00 5456.0
1 TraesCS2B01G567900 chr2B 93.241 2086 107 8 1 2055 758086214 758084132 0.000000e+00 3040.0
2 TraesCS2B01G567900 chr2B 83.333 66 8 3 374 437 411494193 411494257 1.140000e-04 58.4
3 TraesCS2B01G567900 chr2D 91.716 1690 99 12 451 2123 619334334 619332669 0.000000e+00 2307.0
4 TraesCS2B01G567900 chr2D 90.904 1693 110 13 451 2123 619372689 619371021 0.000000e+00 2233.0
5 TraesCS2B01G567900 chr2D 88.837 215 21 3 153 366 619334685 619334473 8.120000e-66 261.0
6 TraesCS2B01G567900 chr2D 75.814 430 75 23 1079 1501 59452426 59452019 1.080000e-44 191.0
7 TraesCS2B01G567900 chr2D 92.424 132 8 2 7 136 619334899 619334768 1.400000e-43 187.0
8 TraesCS2B01G567900 chr2D 89.362 141 7 2 1 136 619373239 619373102 1.410000e-38 171.0
9 TraesCS2B01G567900 chr2D 100.000 28 0 0 374 401 27997142 27997169 5.000000e-03 52.8
10 TraesCS2B01G567900 chr2A 91.768 1640 102 9 494 2118 750531674 750530053 0.000000e+00 2250.0
11 TraesCS2B01G567900 chr2A 91.367 139 9 2 1 136 750532281 750532143 1.400000e-43 187.0
12 TraesCS2B01G567900 chr7B 88.889 648 69 3 2118 2764 465934716 465934071 0.000000e+00 795.0
13 TraesCS2B01G567900 chr7B 80.215 652 123 4 2117 2765 322188760 322189408 4.430000e-133 484.0
14 TraesCS2B01G567900 chr7D 88.479 651 59 5 2115 2764 448690686 448690051 0.000000e+00 773.0
15 TraesCS2B01G567900 chr7D 92.473 186 14 0 2769 2954 9058676 9058861 1.750000e-67 267.0
16 TraesCS2B01G567900 chr5A 87.423 652 77 5 2115 2764 607309150 607309798 0.000000e+00 745.0
17 TraesCS2B01G567900 chr5A 92.105 38 3 0 374 411 482536207 482536170 1.000000e-03 54.7
18 TraesCS2B01G567900 chr7A 85.714 651 91 2 2115 2764 96118360 96119009 0.000000e+00 686.0
19 TraesCS2B01G567900 chr7A 80.519 77 11 4 374 448 677688766 677688692 4.110000e-04 56.5
20 TraesCS2B01G567900 chr1B 84.946 651 96 2 2115 2764 118142396 118143045 0.000000e+00 658.0
21 TraesCS2B01G567900 chr1B 80.967 641 120 2 2120 2759 680756038 680755399 9.450000e-140 507.0
22 TraesCS2B01G567900 chr1B 94.475 181 9 1 2774 2954 162376780 162376601 8.060000e-71 278.0
23 TraesCS2B01G567900 chr1B 93.889 180 11 0 2775 2954 449879095 449879274 3.750000e-69 272.0
24 TraesCS2B01G567900 chr1B 90.385 52 5 0 374 425 492788201 492788252 5.280000e-08 69.4
25 TraesCS2B01G567900 chr3B 84.639 651 98 2 2115 2764 554550707 554551356 0.000000e+00 647.0
26 TraesCS2B01G567900 chr3B 80.680 647 123 2 2120 2765 11937208 11936563 4.400000e-138 501.0
27 TraesCS2B01G567900 chr3B 94.475 181 10 0 2774 2954 39098551 39098371 2.240000e-71 279.0
28 TraesCS2B01G567900 chr3B 100.000 29 0 0 2058 2086 30911178 30911206 1.000000e-03 54.7
29 TraesCS2B01G567900 chr3D 95.580 181 8 0 2774 2954 2874378 2874198 1.040000e-74 291.0
30 TraesCS2B01G567900 chr3D 89.362 47 4 1 374 419 134829690 134829644 1.140000e-04 58.4
31 TraesCS2B01G567900 chr4B 94.475 181 10 0 2774 2954 517718951 517718771 2.240000e-71 279.0
32 TraesCS2B01G567900 chr4B 81.333 75 13 1 375 448 119334559 119334633 3.180000e-05 60.2
33 TraesCS2B01G567900 chrUn 93.989 183 11 0 2772 2954 22865159 22864977 8.060000e-71 278.0
34 TraesCS2B01G567900 chr4A 93.923 181 11 0 2774 2954 713473824 713474004 1.040000e-69 274.0
35 TraesCS2B01G567900 chr5D 93.407 182 11 1 2773 2954 550913372 550913192 4.850000e-68 268.0
36 TraesCS2B01G567900 chr1D 84.000 75 12 0 374 448 370013734 370013808 4.080000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G567900 chr2B 758806949 758809902 2953 False 5456.000000 5456 100.000000 1 2954 1 chr2B.!!$F2 2953
1 TraesCS2B01G567900 chr2B 758084132 758086214 2082 True 3040.000000 3040 93.241000 1 2055 1 chr2B.!!$R1 2054
2 TraesCS2B01G567900 chr2D 619371021 619373239 2218 True 1202.000000 2233 90.133000 1 2123 2 chr2D.!!$R3 2122
3 TraesCS2B01G567900 chr2D 619332669 619334899 2230 True 918.333333 2307 90.992333 7 2123 3 chr2D.!!$R2 2116
4 TraesCS2B01G567900 chr2A 750530053 750532281 2228 True 1218.500000 2250 91.567500 1 2118 2 chr2A.!!$R1 2117
5 TraesCS2B01G567900 chr7B 465934071 465934716 645 True 795.000000 795 88.889000 2118 2764 1 chr7B.!!$R1 646
6 TraesCS2B01G567900 chr7B 322188760 322189408 648 False 484.000000 484 80.215000 2117 2765 1 chr7B.!!$F1 648
7 TraesCS2B01G567900 chr7D 448690051 448690686 635 True 773.000000 773 88.479000 2115 2764 1 chr7D.!!$R1 649
8 TraesCS2B01G567900 chr5A 607309150 607309798 648 False 745.000000 745 87.423000 2115 2764 1 chr5A.!!$F1 649
9 TraesCS2B01G567900 chr7A 96118360 96119009 649 False 686.000000 686 85.714000 2115 2764 1 chr7A.!!$F1 649
10 TraesCS2B01G567900 chr1B 118142396 118143045 649 False 658.000000 658 84.946000 2115 2764 1 chr1B.!!$F1 649
11 TraesCS2B01G567900 chr1B 680755399 680756038 639 True 507.000000 507 80.967000 2120 2759 1 chr1B.!!$R2 639
12 TraesCS2B01G567900 chr3B 554550707 554551356 649 False 647.000000 647 84.639000 2115 2764 1 chr3B.!!$F2 649
13 TraesCS2B01G567900 chr3B 11936563 11937208 645 True 501.000000 501 80.680000 2120 2765 1 chr3B.!!$R1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
588 770 0.394625 AGAGTCGTGCCTCCTACCTC 60.395 60.0 0.0 0.0 31.53 3.85 F
1665 1858 0.110486 ATCTGAGCGGGTTGTTTGGT 59.890 50.0 0.0 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1759 1952 0.114560 TCTTCCTTCCTCCTCACCGT 59.885 55.0 0.00 0.0 0.0 4.83 R
2830 3030 0.032952 CCTTATTAGTAGCGCGGCCA 59.967 55.0 8.83 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 118 6.378280 AGTCTGTTTCTTTTTCAATGGTGAGT 59.622 34.615 0.00 0.00 34.49 3.41
172 246 5.048921 CCAATCATCATACTGGTCTCAATGC 60.049 44.000 0.00 0.00 0.00 3.56
401 556 6.094325 ACGGACTAAAATGAGTGAACAAACAA 59.906 34.615 0.00 0.00 0.00 2.83
405 560 8.687824 ACTAAAATGAGTGAACAAACAAACTG 57.312 30.769 0.00 0.00 0.00 3.16
420 583 7.094377 ACAAACAAACTGAAGTGTGTCTATGTT 60.094 33.333 6.73 0.00 45.20 2.71
459 632 3.922910 AGTTAGAACAGTAAACGGAGGC 58.077 45.455 0.00 0.00 0.00 4.70
553 731 1.203523 AGTCCAGCGAAACTAGCTCTG 59.796 52.381 0.00 0.00 44.06 3.35
588 770 0.394625 AGAGTCGTGCCTCCTACCTC 60.395 60.000 0.00 0.00 31.53 3.85
848 1030 3.003173 CACCCCTGCTCTCCCGAA 61.003 66.667 0.00 0.00 0.00 4.30
1029 1219 4.736896 GGCCGTTTCGACGAGCCT 62.737 66.667 16.27 0.00 42.20 4.58
1030 1220 3.479269 GCCGTTTCGACGAGCCTG 61.479 66.667 0.00 0.00 34.64 4.85
1152 1342 3.114616 CACGGCGACCTGAAGCTG 61.115 66.667 16.62 0.00 44.74 4.24
1463 1653 3.771160 GGACCCAGACGCCGACAT 61.771 66.667 0.00 0.00 0.00 3.06
1477 1667 2.071540 CCGACATGCGCATCAAGATAT 58.928 47.619 22.51 0.00 39.11 1.63
1512 1702 2.227194 CACCCTTGGGTACAACAAGAC 58.773 52.381 23.39 0.00 46.27 3.01
1538 1731 2.407026 CGTCGTCGTTTGACATCATTCA 59.593 45.455 0.00 0.00 45.80 2.57
1581 1774 2.722094 CCGGAAGTGATGAAATGGGAA 58.278 47.619 0.00 0.00 0.00 3.97
1584 1777 3.091545 GGAAGTGATGAAATGGGAAGCA 58.908 45.455 0.00 0.00 0.00 3.91
1605 1798 2.376518 AGAAATGGAGCAAGTGAGGGAA 59.623 45.455 0.00 0.00 0.00 3.97
1665 1858 0.110486 ATCTGAGCGGGTTGTTTGGT 59.890 50.000 0.00 0.00 0.00 3.67
1696 1889 0.725117 CCGGGTTCGATTTGCTGTAC 59.275 55.000 0.00 0.00 39.00 2.90
1747 1940 2.586245 CTGAGGAGATTGGGCGCA 59.414 61.111 10.83 0.00 0.00 6.09
1759 1952 4.344865 GGCGCAAGGAGGGGTTCA 62.345 66.667 10.83 0.00 38.28 3.18
1782 1978 2.640332 GGTGAGGAGGAAGGAAGAAGTT 59.360 50.000 0.00 0.00 0.00 2.66
1815 2011 1.812571 GTCATGTTTGAGGCGATTGGT 59.187 47.619 0.00 0.00 30.85 3.67
1827 2023 1.141053 GCGATTGGTAGGGAGGTCATT 59.859 52.381 0.00 0.00 0.00 2.57
1909 2105 2.307098 AGCTCAAGTGAGGCACCTAATT 59.693 45.455 10.25 0.00 42.29 1.40
1939 2135 4.081365 AGAGGCTTCAGCTAGGTCTTAAAC 60.081 45.833 0.00 0.00 41.70 2.01
2020 2218 9.431887 GAAAAATGAGTGTATAGTCCACAACTA 57.568 33.333 0.00 0.00 44.49 2.24
2055 2253 5.968254 TCGTTGGCACATTAGACTATGTTA 58.032 37.500 0.00 0.00 39.30 2.41
2057 2255 6.040247 CGTTGGCACATTAGACTATGTTAGA 58.960 40.000 0.00 0.00 39.30 2.10
2152 2350 2.210116 TCCACTCTCACGCTCAAAAAC 58.790 47.619 0.00 0.00 0.00 2.43
2201 2399 0.243907 ATTATCGGATCCGCACCTCG 59.756 55.000 29.62 3.95 39.59 4.63
2246 2444 5.865013 CACAAAAATATTACCCCCAAACGTC 59.135 40.000 0.00 0.00 0.00 4.34
2252 2450 0.533491 TACCCCCAAACGTCATCTCG 59.467 55.000 0.00 0.00 0.00 4.04
2332 2530 2.941563 GAACCCCCTCGCTAGCCCTA 62.942 65.000 9.66 0.00 0.00 3.53
2461 2659 2.290071 TGCTTAAACAGAGCCCACCTAC 60.290 50.000 0.00 0.00 39.38 3.18
2495 2693 1.708341 AAAGGCCATGCAAACACTCT 58.292 45.000 5.01 0.00 0.00 3.24
2546 2746 2.417257 GCCCATCAAAGCCATCGCA 61.417 57.895 0.00 0.00 37.52 5.10
2550 2750 2.419021 CCCATCAAAGCCATCGCAAAAT 60.419 45.455 0.00 0.00 37.52 1.82
2747 2947 2.838813 TCGACTCTCTCTCTTGGGACTA 59.161 50.000 0.00 0.00 0.00 2.59
2765 2965 8.202461 TGGGACTACCTTACATCCATATTAAG 57.798 38.462 0.00 0.00 41.11 1.85
2766 2966 7.236847 TGGGACTACCTTACATCCATATTAAGG 59.763 40.741 8.13 8.13 45.15 2.69
2772 2972 6.531021 CCTTACATCCATATTAAGGTTCCGT 58.469 40.000 2.99 0.00 37.95 4.69
2773 2973 6.649557 CCTTACATCCATATTAAGGTTCCGTC 59.350 42.308 2.99 0.00 37.95 4.79
2774 2974 5.623956 ACATCCATATTAAGGTTCCGTCA 57.376 39.130 0.00 0.00 0.00 4.35
2775 2975 5.365619 ACATCCATATTAAGGTTCCGTCAC 58.634 41.667 0.00 0.00 0.00 3.67
2776 2976 5.130477 ACATCCATATTAAGGTTCCGTCACT 59.870 40.000 0.00 0.00 0.00 3.41
2777 2977 6.325545 ACATCCATATTAAGGTTCCGTCACTA 59.674 38.462 0.00 0.00 0.00 2.74
2778 2978 6.152932 TCCATATTAAGGTTCCGTCACTAC 57.847 41.667 0.00 0.00 0.00 2.73
2779 2979 5.895534 TCCATATTAAGGTTCCGTCACTACT 59.104 40.000 0.00 0.00 0.00 2.57
2780 2980 7.062322 TCCATATTAAGGTTCCGTCACTACTA 58.938 38.462 0.00 0.00 0.00 1.82
2781 2981 7.230108 TCCATATTAAGGTTCCGTCACTACTAG 59.770 40.741 0.00 0.00 0.00 2.57
2782 2982 5.848833 ATTAAGGTTCCGTCACTACTAGG 57.151 43.478 0.00 0.00 0.00 3.02
2783 2983 2.140839 AGGTTCCGTCACTACTAGGG 57.859 55.000 0.00 0.00 0.00 3.53
2784 2984 1.637553 AGGTTCCGTCACTACTAGGGA 59.362 52.381 0.00 0.00 0.00 4.20
2785 2985 2.042162 AGGTTCCGTCACTACTAGGGAA 59.958 50.000 0.00 0.00 38.28 3.97
2786 2986 2.827921 GGTTCCGTCACTACTAGGGAAA 59.172 50.000 0.00 0.00 41.23 3.13
2787 2987 3.259123 GGTTCCGTCACTACTAGGGAAAA 59.741 47.826 0.00 0.00 41.23 2.29
2788 2988 4.240888 GTTCCGTCACTACTAGGGAAAAC 58.759 47.826 0.00 0.00 41.23 2.43
2789 2989 2.827921 TCCGTCACTACTAGGGAAAACC 59.172 50.000 0.00 0.00 40.67 3.27
2790 2990 2.093816 CCGTCACTACTAGGGAAAACCC 60.094 54.545 0.00 0.00 41.63 4.11
2791 2991 2.830321 CGTCACTACTAGGGAAAACCCT 59.170 50.000 12.57 12.57 41.63 4.34
2792 2992 4.019174 CGTCACTACTAGGGAAAACCCTA 58.981 47.826 13.44 13.44 41.63 3.53
2801 3001 3.029570 AGGGAAAACCCTAGTAGTAGCG 58.970 50.000 5.97 0.00 41.63 4.26
2802 3002 2.762887 GGGAAAACCCTAGTAGTAGCGT 59.237 50.000 0.00 0.00 34.51 5.07
2803 3003 3.429960 GGGAAAACCCTAGTAGTAGCGTG 60.430 52.174 0.00 0.00 34.51 5.34
2804 3004 3.429960 GGAAAACCCTAGTAGTAGCGTGG 60.430 52.174 0.00 0.00 0.00 4.94
2805 3005 1.772836 AACCCTAGTAGTAGCGTGGG 58.227 55.000 0.00 0.00 40.37 4.61
2806 3006 0.627986 ACCCTAGTAGTAGCGTGGGT 59.372 55.000 0.00 0.00 42.52 4.51
2807 3007 1.006400 ACCCTAGTAGTAGCGTGGGTT 59.994 52.381 0.00 0.00 44.68 4.11
2808 3008 2.105766 CCCTAGTAGTAGCGTGGGTTT 58.894 52.381 0.00 0.00 0.00 3.27
2809 3009 2.498885 CCCTAGTAGTAGCGTGGGTTTT 59.501 50.000 0.00 0.00 0.00 2.43
2810 3010 3.701040 CCCTAGTAGTAGCGTGGGTTTTA 59.299 47.826 0.00 0.00 0.00 1.52
2811 3011 4.160252 CCCTAGTAGTAGCGTGGGTTTTAA 59.840 45.833 0.00 0.00 0.00 1.52
2812 3012 5.105063 CCTAGTAGTAGCGTGGGTTTTAAC 58.895 45.833 0.00 0.00 0.00 2.01
2813 3013 3.578688 AGTAGTAGCGTGGGTTTTAACG 58.421 45.455 0.00 0.00 42.61 3.18
2820 3020 3.651562 CGTGGGTTTTAACGCTATCAG 57.348 47.619 10.44 0.00 41.84 2.90
2821 3021 2.997986 CGTGGGTTTTAACGCTATCAGT 59.002 45.455 10.44 0.00 41.84 3.41
2822 3022 4.175516 CGTGGGTTTTAACGCTATCAGTA 58.824 43.478 10.44 0.00 41.84 2.74
2823 3023 4.266976 CGTGGGTTTTAACGCTATCAGTAG 59.733 45.833 10.44 0.00 41.84 2.57
2830 3030 2.728817 GCTATCAGTAGCGCGGGT 59.271 61.111 8.83 0.00 43.49 5.28
2831 3031 1.661821 GCTATCAGTAGCGCGGGTG 60.662 63.158 8.83 0.00 43.49 4.61
2832 3032 1.007271 CTATCAGTAGCGCGGGTGG 60.007 63.158 8.83 0.00 0.00 4.61
2833 3033 3.146726 TATCAGTAGCGCGGGTGGC 62.147 63.158 8.83 0.00 38.69 5.01
2844 3044 4.151582 GGGTGGCCGCGCTACTAA 62.152 66.667 24.95 0.00 39.93 2.24
2845 3045 2.108362 GGTGGCCGCGCTACTAAT 59.892 61.111 10.86 0.00 39.93 1.73
2846 3046 1.364901 GGTGGCCGCGCTACTAATA 59.635 57.895 10.86 0.00 39.93 0.98
2847 3047 0.249573 GGTGGCCGCGCTACTAATAA 60.250 55.000 10.86 0.00 39.93 1.40
2848 3048 1.137513 GTGGCCGCGCTACTAATAAG 58.862 55.000 5.56 0.00 37.08 1.73
2849 3049 0.032952 TGGCCGCGCTACTAATAAGG 59.967 55.000 5.56 0.00 0.00 2.69
2850 3050 1.289800 GGCCGCGCTACTAATAAGGC 61.290 60.000 5.56 7.28 42.10 4.35
2856 3056 3.278367 CGCTACTAATAAGGCGCTACA 57.722 47.619 7.64 0.00 41.08 2.74
2857 3057 3.235195 CGCTACTAATAAGGCGCTACAG 58.765 50.000 7.64 0.00 41.08 2.74
2858 3058 2.987821 GCTACTAATAAGGCGCTACAGC 59.012 50.000 7.64 0.00 37.78 4.40
2859 3059 3.305471 GCTACTAATAAGGCGCTACAGCT 60.305 47.826 7.64 0.00 39.32 4.24
2860 3060 4.082895 GCTACTAATAAGGCGCTACAGCTA 60.083 45.833 7.64 0.00 39.32 3.32
2861 3061 4.931661 ACTAATAAGGCGCTACAGCTAA 57.068 40.909 7.64 0.00 39.32 3.09
2862 3062 4.618965 ACTAATAAGGCGCTACAGCTAAC 58.381 43.478 7.64 0.00 39.32 2.34
2863 3063 3.536956 AATAAGGCGCTACAGCTAACA 57.463 42.857 7.64 0.00 39.32 2.41
2864 3064 3.536956 ATAAGGCGCTACAGCTAACAA 57.463 42.857 7.64 0.00 39.32 2.83
2865 3065 2.178912 AAGGCGCTACAGCTAACAAA 57.821 45.000 7.64 0.00 39.32 2.83
2866 3066 2.403252 AGGCGCTACAGCTAACAAAT 57.597 45.000 7.64 0.00 39.32 2.32
2867 3067 3.536956 AGGCGCTACAGCTAACAAATA 57.463 42.857 7.64 0.00 39.32 1.40
2868 3068 3.458189 AGGCGCTACAGCTAACAAATAG 58.542 45.455 7.64 0.00 39.32 1.73
2869 3069 3.118738 AGGCGCTACAGCTAACAAATAGT 60.119 43.478 7.64 0.00 39.32 2.12
2870 3070 4.098960 AGGCGCTACAGCTAACAAATAGTA 59.901 41.667 7.64 0.00 39.32 1.82
2871 3071 4.208666 GGCGCTACAGCTAACAAATAGTAC 59.791 45.833 7.64 0.00 39.32 2.73
2872 3072 5.041940 GCGCTACAGCTAACAAATAGTACT 58.958 41.667 0.00 0.00 39.32 2.73
2873 3073 6.204359 GCGCTACAGCTAACAAATAGTACTA 58.796 40.000 4.77 4.77 39.32 1.82
2874 3074 6.360148 GCGCTACAGCTAACAAATAGTACTAG 59.640 42.308 8.85 0.00 39.32 2.57
2875 3075 6.360148 CGCTACAGCTAACAAATAGTACTAGC 59.640 42.308 8.85 6.11 37.00 3.42
2876 3076 6.360148 GCTACAGCTAACAAATAGTACTAGCG 59.640 42.308 8.85 5.55 40.11 4.26
2877 3077 5.041940 ACAGCTAACAAATAGTACTAGCGC 58.958 41.667 8.85 0.00 40.11 5.92
2878 3078 5.163540 ACAGCTAACAAATAGTACTAGCGCT 60.164 40.000 17.26 17.26 40.11 5.92
2879 3079 5.399892 CAGCTAACAAATAGTACTAGCGCTC 59.600 44.000 16.34 0.00 40.11 5.03
2880 3080 5.299782 AGCTAACAAATAGTACTAGCGCTCT 59.700 40.000 16.34 7.52 40.11 4.09
2881 3081 6.485984 AGCTAACAAATAGTACTAGCGCTCTA 59.514 38.462 16.34 9.98 40.11 2.43
2882 3082 7.175293 AGCTAACAAATAGTACTAGCGCTCTAT 59.825 37.037 16.34 12.16 40.11 1.98
2883 3083 7.271653 GCTAACAAATAGTACTAGCGCTCTATG 59.728 40.741 16.34 8.00 33.87 2.23
2884 3084 6.636562 ACAAATAGTACTAGCGCTCTATGT 57.363 37.500 16.34 6.98 0.00 2.29
2885 3085 7.741027 ACAAATAGTACTAGCGCTCTATGTA 57.259 36.000 16.34 10.74 0.00 2.29
2886 3086 7.583230 ACAAATAGTACTAGCGCTCTATGTAC 58.417 38.462 16.34 21.32 33.95 2.90
2887 3087 6.740411 AATAGTACTAGCGCTCTATGTACC 57.260 41.667 25.28 15.16 34.08 3.34
2888 3088 3.410508 AGTACTAGCGCTCTATGTACCC 58.589 50.000 25.28 12.23 34.08 3.69
2889 3089 1.236628 ACTAGCGCTCTATGTACCCG 58.763 55.000 16.34 0.00 0.00 5.28
2890 3090 0.109689 CTAGCGCTCTATGTACCCGC 60.110 60.000 16.34 0.00 44.47 6.13
2891 3091 2.729862 GCGCTCTATGTACCCGCG 60.730 66.667 0.00 0.00 45.88 6.46
2892 3092 2.729862 CGCTCTATGTACCCGCGC 60.730 66.667 0.00 0.00 37.29 6.86
2893 3093 2.728817 GCTCTATGTACCCGCGCT 59.271 61.111 5.56 0.00 0.00 5.92
2894 3094 1.848932 CGCTCTATGTACCCGCGCTA 61.849 60.000 5.56 0.00 37.29 4.26
2895 3095 0.386985 GCTCTATGTACCCGCGCTAC 60.387 60.000 5.56 1.51 0.00 3.58
2896 3096 1.236628 CTCTATGTACCCGCGCTACT 58.763 55.000 5.56 0.00 0.00 2.57
2897 3097 2.420642 CTCTATGTACCCGCGCTACTA 58.579 52.381 5.56 0.00 0.00 1.82
2898 3098 2.415857 CTCTATGTACCCGCGCTACTAG 59.584 54.545 5.56 5.81 0.00 2.57
2899 3099 2.149578 CTATGTACCCGCGCTACTAGT 58.850 52.381 5.56 0.00 0.00 2.57
2900 3100 2.260844 ATGTACCCGCGCTACTAGTA 57.739 50.000 5.56 1.89 0.00 1.82
2901 3101 2.260844 TGTACCCGCGCTACTAGTAT 57.739 50.000 5.56 0.00 0.00 2.12
2902 3102 2.575532 TGTACCCGCGCTACTAGTATT 58.424 47.619 5.56 0.00 0.00 1.89
2903 3103 2.291465 TGTACCCGCGCTACTAGTATTG 59.709 50.000 5.56 0.16 0.00 1.90
2904 3104 1.683943 ACCCGCGCTACTAGTATTGA 58.316 50.000 5.56 0.00 0.00 2.57
2905 3105 2.026641 ACCCGCGCTACTAGTATTGAA 58.973 47.619 5.56 0.00 0.00 2.69
2906 3106 2.626743 ACCCGCGCTACTAGTATTGAAT 59.373 45.455 5.56 0.00 0.00 2.57
2907 3107 2.987149 CCCGCGCTACTAGTATTGAATG 59.013 50.000 5.56 0.00 0.00 2.67
2908 3108 3.552273 CCCGCGCTACTAGTATTGAATGT 60.552 47.826 5.56 0.00 0.00 2.71
2909 3109 4.320714 CCCGCGCTACTAGTATTGAATGTA 60.321 45.833 5.56 0.00 0.00 2.29
2910 3110 5.399858 CCGCGCTACTAGTATTGAATGTAT 58.600 41.667 5.56 0.00 0.00 2.29
2911 3111 5.862323 CCGCGCTACTAGTATTGAATGTATT 59.138 40.000 5.56 0.00 0.00 1.89
2912 3112 7.025365 CCGCGCTACTAGTATTGAATGTATTA 58.975 38.462 5.56 0.00 0.00 0.98
2913 3113 7.218393 CCGCGCTACTAGTATTGAATGTATTAG 59.782 40.741 5.56 0.00 0.00 1.73
2914 3114 7.749570 CGCGCTACTAGTATTGAATGTATTAGT 59.250 37.037 5.56 0.00 31.92 2.24
2919 3119 8.967552 ACTAGTATTGAATGTATTAGTAGCGC 57.032 34.615 0.00 0.00 0.00 5.92
2920 3120 8.794553 ACTAGTATTGAATGTATTAGTAGCGCT 58.205 33.333 17.26 17.26 0.00 5.92
2921 3121 9.627395 CTAGTATTGAATGTATTAGTAGCGCTT 57.373 33.333 18.68 0.00 0.00 4.68
2922 3122 8.888579 AGTATTGAATGTATTAGTAGCGCTTT 57.111 30.769 18.68 7.38 0.00 3.51
2923 3123 9.326413 AGTATTGAATGTATTAGTAGCGCTTTT 57.674 29.630 18.68 6.95 0.00 2.27
2924 3124 9.582223 GTATTGAATGTATTAGTAGCGCTTTTC 57.418 33.333 18.68 7.06 0.00 2.29
2925 3125 6.598753 TGAATGTATTAGTAGCGCTTTTCC 57.401 37.500 18.68 0.95 0.00 3.13
2926 3126 6.110033 TGAATGTATTAGTAGCGCTTTTCCA 58.890 36.000 18.68 4.13 0.00 3.53
2927 3127 6.596106 TGAATGTATTAGTAGCGCTTTTCCAA 59.404 34.615 18.68 3.47 0.00 3.53
2928 3128 5.789710 TGTATTAGTAGCGCTTTTCCAAC 57.210 39.130 18.68 6.40 0.00 3.77
2929 3129 5.239351 TGTATTAGTAGCGCTTTTCCAACA 58.761 37.500 18.68 11.67 0.00 3.33
2930 3130 5.878116 TGTATTAGTAGCGCTTTTCCAACAT 59.122 36.000 18.68 0.00 0.00 2.71
2931 3131 4.678509 TTAGTAGCGCTTTTCCAACATG 57.321 40.909 18.68 0.00 0.00 3.21
2932 3132 1.200020 AGTAGCGCTTTTCCAACATGC 59.800 47.619 18.68 0.00 0.00 4.06
2934 3134 3.451250 CGCTTTTCCAACATGCGC 58.549 55.556 0.00 0.00 40.15 6.09
2935 3135 1.081242 CGCTTTTCCAACATGCGCT 60.081 52.632 9.73 0.00 40.15 5.92
2936 3136 0.167908 CGCTTTTCCAACATGCGCTA 59.832 50.000 9.73 0.00 40.15 4.26
2937 3137 1.617740 GCTTTTCCAACATGCGCTAC 58.382 50.000 9.73 0.00 0.00 3.58
2938 3138 1.200020 GCTTTTCCAACATGCGCTACT 59.800 47.619 9.73 0.00 0.00 2.57
2939 3139 2.418628 GCTTTTCCAACATGCGCTACTA 59.581 45.455 9.73 0.00 0.00 1.82
2940 3140 3.119990 GCTTTTCCAACATGCGCTACTAA 60.120 43.478 9.73 0.00 0.00 2.24
2941 3141 4.438744 GCTTTTCCAACATGCGCTACTAAT 60.439 41.667 9.73 0.00 0.00 1.73
2942 3142 5.220777 GCTTTTCCAACATGCGCTACTAATA 60.221 40.000 9.73 0.00 0.00 0.98
2943 3143 6.676943 GCTTTTCCAACATGCGCTACTAATAA 60.677 38.462 9.73 0.00 0.00 1.40
2944 3144 5.984233 TTCCAACATGCGCTACTAATAAG 57.016 39.130 9.73 0.00 0.00 1.73
2945 3145 5.018539 TCCAACATGCGCTACTAATAAGT 57.981 39.130 9.73 0.00 39.91 2.24
2946 3146 6.151663 TCCAACATGCGCTACTAATAAGTA 57.848 37.500 9.73 0.00 37.15 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 7.042254 GGTCAGATACGAACAGTACAAGTTTTT 60.042 37.037 5.37 0.00 38.29 1.94
110 118 3.132289 GTGGGAAGTATGATCACGAGGAA 59.868 47.826 0.00 0.00 0.00 3.36
172 246 7.068103 AGAGTGTCACTTTGGATACTATCTCAG 59.932 40.741 7.00 0.00 39.05 3.35
356 465 9.632638 AGTCCGTATACAAGAGGTACTAAATAA 57.367 33.333 3.32 0.00 41.55 1.40
383 538 7.872483 ACTTCAGTTTGTTTGTTCACTCATTTT 59.128 29.630 0.00 0.00 0.00 1.82
401 556 6.763355 AGATGAACATAGACACACTTCAGTT 58.237 36.000 0.00 0.00 0.00 3.16
405 560 8.029522 TGAAGTAGATGAACATAGACACACTTC 58.970 37.037 0.00 0.00 38.91 3.01
501 674 6.866010 TTCGAGAAAGGTTTTAGGGTAAAC 57.134 37.500 0.00 0.00 37.30 2.01
553 731 3.206964 GACTCTGCTGCCCTTTTATACC 58.793 50.000 0.00 0.00 0.00 2.73
588 770 1.110442 TGTTGCCTCTGGTTTTGTGG 58.890 50.000 0.00 0.00 0.00 4.17
700 882 1.680522 GCCCTGCAGGATCTTCGAGA 61.681 60.000 34.91 0.00 38.24 4.04
752 934 1.533338 CGGTAGACTTTGGACGATCCG 60.533 57.143 0.00 0.00 40.17 4.18
836 1018 1.821332 GGCCATTTCGGGAGAGCAG 60.821 63.158 0.00 0.00 41.75 4.24
1152 1342 2.432628 CACAGCCCGAAGTCCGTC 60.433 66.667 0.00 0.00 36.31 4.79
1463 1653 3.457610 TCTCACATATCTTGATGCGCA 57.542 42.857 14.96 14.96 0.00 6.09
1477 1667 0.543277 GGGTGCTCCATGATCTCACA 59.457 55.000 7.20 0.00 35.00 3.58
1538 1731 1.859302 AGGATCAGAGGAACGAGCTT 58.141 50.000 0.00 0.00 0.00 3.74
1581 1774 2.434428 CTCACTTGCTCCATTTCTGCT 58.566 47.619 0.00 0.00 0.00 4.24
1584 1777 1.988107 TCCCTCACTTGCTCCATTTCT 59.012 47.619 0.00 0.00 0.00 2.52
1605 1798 2.054687 TTATGTCGAACGCGTTCAGT 57.945 45.000 40.99 27.90 39.46 3.41
1696 1889 1.247567 GACCCAATGTCCACACCTTG 58.752 55.000 0.00 0.00 38.09 3.61
1747 1940 1.460689 TCACCGTGAACCCCTCCTT 60.461 57.895 0.00 0.00 0.00 3.36
1759 1952 0.114560 TCTTCCTTCCTCCTCACCGT 59.885 55.000 0.00 0.00 0.00 4.83
1815 2011 0.988145 CCAGGGCAATGACCTCCCTA 60.988 60.000 3.68 0.00 35.03 3.53
1848 2044 6.575162 ACCATCAACATTTCCTCTAACAAC 57.425 37.500 0.00 0.00 0.00 3.32
1909 2105 1.130054 AGCTGAAGCCTCTCCCACAA 61.130 55.000 0.00 0.00 43.38 3.33
2010 2208 3.146066 TGCACTTCCATTAGTTGTGGAC 58.854 45.455 0.00 0.00 45.05 4.02
2015 2213 4.406069 CAACGATGCACTTCCATTAGTTG 58.594 43.478 0.00 0.00 37.56 3.16
2020 2218 0.527565 GCCAACGATGCACTTCCATT 59.472 50.000 0.00 0.00 0.00 3.16
2095 2293 8.454570 TCAGCTAATTATTGCTTTCATCATGA 57.545 30.769 0.00 0.00 37.44 3.07
2102 2300 6.639632 TCCCATCAGCTAATTATTGCTTTC 57.360 37.500 0.00 0.00 37.44 2.62
2152 2350 5.939883 TGAAGTGATCTTTCAGTATGGTTGG 59.060 40.000 8.54 0.00 34.33 3.77
2246 2444 1.565305 GAGTGTGCTAAGCCGAGATG 58.435 55.000 0.00 0.00 0.00 2.90
2252 2450 0.528470 AGAGTCGAGTGTGCTAAGCC 59.472 55.000 0.00 0.00 0.00 4.35
2332 2530 4.002797 GCCGAAGCCATTTGGTCT 57.997 55.556 0.00 0.00 41.55 3.85
2480 2678 0.166814 GTCGAGAGTGTTTGCATGGC 59.833 55.000 0.00 0.00 0.00 4.40
2511 2710 0.915364 GGCAGTTCTGGAGGGAGATT 59.085 55.000 1.97 0.00 0.00 2.40
2546 2746 9.744468 GTTTTAATCTGTTGGTGAGTACATTTT 57.256 29.630 0.00 0.00 0.00 1.82
2550 2750 5.467399 CGGTTTTAATCTGTTGGTGAGTACA 59.533 40.000 0.00 0.00 0.00 2.90
2665 2865 0.830648 TTTCTAGTATGGCAGGCGCT 59.169 50.000 7.64 0.00 38.60 5.92
2765 2965 2.134789 TCCCTAGTAGTGACGGAACC 57.865 55.000 0.00 0.00 0.00 3.62
2766 2966 4.240888 GTTTTCCCTAGTAGTGACGGAAC 58.759 47.826 5.41 0.00 32.42 3.62
2767 2967 3.259123 GGTTTTCCCTAGTAGTGACGGAA 59.741 47.826 2.46 2.46 0.00 4.30
2768 2968 2.827921 GGTTTTCCCTAGTAGTGACGGA 59.172 50.000 0.00 0.00 0.00 4.69
2769 2969 3.242549 GGTTTTCCCTAGTAGTGACGG 57.757 52.381 0.00 0.00 0.00 4.79
2782 2982 3.429960 CCACGCTACTACTAGGGTTTTCC 60.430 52.174 0.00 0.00 42.10 3.13
2783 2983 3.429960 CCCACGCTACTACTAGGGTTTTC 60.430 52.174 0.00 0.00 42.10 2.29
2784 2984 2.498885 CCCACGCTACTACTAGGGTTTT 59.501 50.000 0.00 0.00 42.10 2.43
2785 2985 2.105766 CCCACGCTACTACTAGGGTTT 58.894 52.381 0.00 0.00 42.10 3.27
2786 2986 1.006400 ACCCACGCTACTACTAGGGTT 59.994 52.381 0.00 0.00 46.99 4.11
2787 2987 0.627986 ACCCACGCTACTACTAGGGT 59.372 55.000 0.00 0.00 44.83 4.34
2788 2988 1.772836 AACCCACGCTACTACTAGGG 58.227 55.000 0.00 0.00 42.07 3.53
2789 2989 3.881937 AAAACCCACGCTACTACTAGG 57.118 47.619 0.00 0.00 0.00 3.02
2790 2990 4.795278 CGTTAAAACCCACGCTACTACTAG 59.205 45.833 0.00 0.00 0.00 2.57
2791 2991 4.732784 CGTTAAAACCCACGCTACTACTA 58.267 43.478 0.00 0.00 0.00 1.82
2792 2992 3.578688 CGTTAAAACCCACGCTACTACT 58.421 45.455 0.00 0.00 0.00 2.57
2793 2993 3.978352 CGTTAAAACCCACGCTACTAC 57.022 47.619 0.00 0.00 0.00 2.73
2800 3000 2.997986 ACTGATAGCGTTAAAACCCACG 59.002 45.455 0.00 0.00 39.49 4.94
2801 3001 4.033702 GCTACTGATAGCGTTAAAACCCAC 59.966 45.833 0.00 0.00 44.36 4.61
2802 3002 4.186159 GCTACTGATAGCGTTAAAACCCA 58.814 43.478 0.00 0.00 44.36 4.51
2803 3003 4.790810 GCTACTGATAGCGTTAAAACCC 57.209 45.455 0.00 0.00 44.36 4.11
2814 3014 1.007271 CCACCCGCGCTACTGATAG 60.007 63.158 5.56 0.00 0.00 2.08
2815 3015 3.125607 CCACCCGCGCTACTGATA 58.874 61.111 5.56 0.00 0.00 2.15
2816 3016 4.530857 GCCACCCGCGCTACTGAT 62.531 66.667 5.56 0.00 0.00 2.90
2827 3027 2.091102 TATTAGTAGCGCGGCCACCC 62.091 60.000 8.83 0.00 0.00 4.61
2828 3028 0.249573 TTATTAGTAGCGCGGCCACC 60.250 55.000 8.83 0.00 0.00 4.61
2829 3029 1.137513 CTTATTAGTAGCGCGGCCAC 58.862 55.000 8.83 0.00 0.00 5.01
2830 3030 0.032952 CCTTATTAGTAGCGCGGCCA 59.967 55.000 8.83 0.00 0.00 5.36
2831 3031 1.289800 GCCTTATTAGTAGCGCGGCC 61.290 60.000 8.83 0.00 0.00 6.13
2832 3032 1.615107 CGCCTTATTAGTAGCGCGGC 61.615 60.000 8.83 4.17 42.31 6.53
2833 3033 2.431539 CGCCTTATTAGTAGCGCGG 58.568 57.895 8.83 0.00 42.31 6.46
2837 3037 2.987821 GCTGTAGCGCCTTATTAGTAGC 59.012 50.000 2.29 0.00 0.00 3.58
2851 3051 6.360148 CGCTAGTACTATTTGTTAGCTGTAGC 59.640 42.308 2.33 0.00 34.50 3.58
2852 3052 6.360148 GCGCTAGTACTATTTGTTAGCTGTAG 59.640 42.308 2.33 0.00 34.50 2.74
2853 3053 6.039047 AGCGCTAGTACTATTTGTTAGCTGTA 59.961 38.462 8.99 0.00 34.50 2.74
2854 3054 5.041940 GCGCTAGTACTATTTGTTAGCTGT 58.958 41.667 2.33 0.00 34.50 4.40
2855 3055 5.282510 AGCGCTAGTACTATTTGTTAGCTG 58.717 41.667 8.99 1.83 34.50 4.24
2856 3056 5.299782 AGAGCGCTAGTACTATTTGTTAGCT 59.700 40.000 11.50 6.78 34.50 3.32
2857 3057 5.521544 AGAGCGCTAGTACTATTTGTTAGC 58.478 41.667 11.50 2.19 33.75 3.09
2858 3058 8.291032 ACATAGAGCGCTAGTACTATTTGTTAG 58.709 37.037 11.50 2.74 0.00 2.34
2859 3059 8.162878 ACATAGAGCGCTAGTACTATTTGTTA 57.837 34.615 11.50 0.00 0.00 2.41
2860 3060 7.040473 ACATAGAGCGCTAGTACTATTTGTT 57.960 36.000 11.50 0.00 0.00 2.83
2861 3061 6.636562 ACATAGAGCGCTAGTACTATTTGT 57.363 37.500 11.50 7.08 0.00 2.83
2862 3062 7.022384 GGTACATAGAGCGCTAGTACTATTTG 58.978 42.308 26.68 16.59 34.81 2.32
2863 3063 6.150809 GGGTACATAGAGCGCTAGTACTATTT 59.849 42.308 26.68 18.20 34.81 1.40
2864 3064 5.647225 GGGTACATAGAGCGCTAGTACTATT 59.353 44.000 26.68 16.03 34.81 1.73
2865 3065 5.184711 GGGTACATAGAGCGCTAGTACTAT 58.815 45.833 26.68 19.80 34.81 2.12
2866 3066 4.573900 GGGTACATAGAGCGCTAGTACTA 58.426 47.826 26.68 18.74 34.81 1.82
2867 3067 3.410508 GGGTACATAGAGCGCTAGTACT 58.589 50.000 26.68 17.50 34.81 2.73
2868 3068 2.159234 CGGGTACATAGAGCGCTAGTAC 59.841 54.545 23.03 23.03 34.29 2.73
2869 3069 2.420642 CGGGTACATAGAGCGCTAGTA 58.579 52.381 11.50 8.69 0.00 1.82
2870 3070 1.236628 CGGGTACATAGAGCGCTAGT 58.763 55.000 11.50 9.80 0.00 2.57
2871 3071 0.109689 GCGGGTACATAGAGCGCTAG 60.110 60.000 11.50 3.11 0.00 3.42
2872 3072 1.848932 CGCGGGTACATAGAGCGCTA 61.849 60.000 11.50 0.00 44.19 4.26
2873 3073 2.728817 GCGGGTACATAGAGCGCT 59.271 61.111 11.27 11.27 0.00 5.92
2874 3074 2.729862 CGCGGGTACATAGAGCGC 60.730 66.667 0.00 0.00 44.19 5.92
2876 3076 0.386985 GTAGCGCGGGTACATAGAGC 60.387 60.000 8.83 0.00 36.64 4.09
2877 3077 1.236628 AGTAGCGCGGGTACATAGAG 58.763 55.000 8.83 0.00 38.76 2.43
2878 3078 2.224378 ACTAGTAGCGCGGGTACATAGA 60.224 50.000 8.83 0.00 38.76 1.98
2879 3079 2.149578 ACTAGTAGCGCGGGTACATAG 58.850 52.381 8.83 13.06 38.76 2.23
2880 3080 2.260844 ACTAGTAGCGCGGGTACATA 57.739 50.000 8.83 3.38 38.76 2.29
2881 3081 2.260844 TACTAGTAGCGCGGGTACAT 57.739 50.000 8.83 2.12 38.76 2.29
2882 3082 2.260844 ATACTAGTAGCGCGGGTACA 57.739 50.000 8.83 0.11 38.76 2.90
2883 3083 2.549754 TCAATACTAGTAGCGCGGGTAC 59.450 50.000 8.83 8.96 36.86 3.34
2884 3084 2.849942 TCAATACTAGTAGCGCGGGTA 58.150 47.619 8.83 2.64 0.00 3.69
2885 3085 1.683943 TCAATACTAGTAGCGCGGGT 58.316 50.000 8.83 0.19 0.00 5.28
2886 3086 2.787601 TTCAATACTAGTAGCGCGGG 57.212 50.000 8.83 0.00 0.00 6.13
2887 3087 3.639538 ACATTCAATACTAGTAGCGCGG 58.360 45.455 8.83 0.00 0.00 6.46
2888 3088 6.929587 AATACATTCAATACTAGTAGCGCG 57.070 37.500 8.85 0.00 0.00 6.86
2889 3089 8.967552 ACTAATACATTCAATACTAGTAGCGC 57.032 34.615 8.85 0.00 0.00 5.92
2894 3094 8.794553 AGCGCTACTAATACATTCAATACTAGT 58.205 33.333 8.99 0.00 0.00 2.57
2895 3095 9.627395 AAGCGCTACTAATACATTCAATACTAG 57.373 33.333 12.05 0.00 0.00 2.57
2896 3096 9.976511 AAAGCGCTACTAATACATTCAATACTA 57.023 29.630 12.05 0.00 0.00 1.82
2897 3097 8.888579 AAAGCGCTACTAATACATTCAATACT 57.111 30.769 12.05 0.00 0.00 2.12
2898 3098 9.582223 GAAAAGCGCTACTAATACATTCAATAC 57.418 33.333 12.05 0.00 0.00 1.89
2899 3099 8.770828 GGAAAAGCGCTACTAATACATTCAATA 58.229 33.333 12.05 0.00 0.00 1.90
2900 3100 7.282224 TGGAAAAGCGCTACTAATACATTCAAT 59.718 33.333 12.05 0.00 0.00 2.57
2901 3101 6.596106 TGGAAAAGCGCTACTAATACATTCAA 59.404 34.615 12.05 0.00 0.00 2.69
2902 3102 6.110033 TGGAAAAGCGCTACTAATACATTCA 58.890 36.000 12.05 0.00 0.00 2.57
2903 3103 6.598753 TGGAAAAGCGCTACTAATACATTC 57.401 37.500 12.05 4.50 0.00 2.67
2904 3104 6.373216 TGTTGGAAAAGCGCTACTAATACATT 59.627 34.615 12.05 0.00 0.00 2.71
2905 3105 5.878116 TGTTGGAAAAGCGCTACTAATACAT 59.122 36.000 12.05 0.00 0.00 2.29
2906 3106 5.239351 TGTTGGAAAAGCGCTACTAATACA 58.761 37.500 12.05 9.28 0.00 2.29
2907 3107 5.789710 TGTTGGAAAAGCGCTACTAATAC 57.210 39.130 12.05 6.49 0.00 1.89
2908 3108 5.220777 GCATGTTGGAAAAGCGCTACTAATA 60.221 40.000 12.05 8.64 0.00 0.98
2909 3109 4.438744 GCATGTTGGAAAAGCGCTACTAAT 60.439 41.667 12.05 0.00 0.00 1.73
2910 3110 3.119990 GCATGTTGGAAAAGCGCTACTAA 60.120 43.478 12.05 7.12 0.00 2.24
2911 3111 2.418628 GCATGTTGGAAAAGCGCTACTA 59.581 45.455 12.05 0.00 0.00 1.82
2912 3112 1.200020 GCATGTTGGAAAAGCGCTACT 59.800 47.619 12.05 0.00 0.00 2.57
2913 3113 1.617740 GCATGTTGGAAAAGCGCTAC 58.382 50.000 12.05 4.18 0.00 3.58
2914 3114 0.167908 CGCATGTTGGAAAAGCGCTA 59.832 50.000 12.05 0.00 37.13 4.26
2915 3115 1.081242 CGCATGTTGGAAAAGCGCT 60.081 52.632 2.64 2.64 37.13 5.92
2916 3116 3.451250 CGCATGTTGGAAAAGCGC 58.549 55.556 0.00 0.00 37.13 5.92
2917 3117 0.167908 TAGCGCATGTTGGAAAAGCG 59.832 50.000 11.47 0.00 43.60 4.68
2918 3118 1.200020 AGTAGCGCATGTTGGAAAAGC 59.800 47.619 11.47 0.00 0.00 3.51
2919 3119 4.678509 TTAGTAGCGCATGTTGGAAAAG 57.321 40.909 11.47 0.00 0.00 2.27
2920 3120 6.373216 ACTTATTAGTAGCGCATGTTGGAAAA 59.627 34.615 11.47 0.00 31.21 2.29
2921 3121 5.878116 ACTTATTAGTAGCGCATGTTGGAAA 59.122 36.000 11.47 0.00 31.21 3.13
2922 3122 5.424757 ACTTATTAGTAGCGCATGTTGGAA 58.575 37.500 11.47 0.00 31.21 3.53
2923 3123 5.018539 ACTTATTAGTAGCGCATGTTGGA 57.981 39.130 11.47 0.00 31.21 3.53
2924 3124 6.453643 CTACTTATTAGTAGCGCATGTTGG 57.546 41.667 11.47 0.00 45.33 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.