Multiple sequence alignment - TraesCS2B01G566900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G566900 chr2B 100.000 2529 0 0 1 2529 758112059 758114587 0.000000e+00 4671
1 TraesCS2B01G566900 chr2B 94.054 2119 92 13 1 2098 758799800 758797695 0.000000e+00 3184
2 TraesCS2B01G566900 chr2B 75.681 551 117 15 988 1532 707462252 707461713 2.500000e-65 259
3 TraesCS2B01G566900 chr2B 76.770 452 96 7 991 1440 707414796 707414352 6.990000e-61 244
4 TraesCS2B01G566900 chr2B 76.535 456 95 9 988 1439 707630855 707630408 3.250000e-59 239
5 TraesCS2B01G566900 chr2B 84.649 228 33 2 160 386 758670797 758671023 2.530000e-55 226
6 TraesCS2B01G566900 chr2B 74.609 575 109 25 982 1534 707620647 707620088 4.240000e-53 219
7 TraesCS2B01G566900 chr2B 80.090 221 40 3 1223 1441 756970183 756970401 7.240000e-36 161
8 TraesCS2B01G566900 chr2D 91.333 2123 131 24 1 2098 619405220 619407314 0.000000e+00 2852
9 TraesCS2B01G566900 chr2D 84.282 369 44 3 2107 2462 106318628 106318261 5.180000e-92 348
10 TraesCS2B01G566900 chr2D 83.978 362 43 4 2115 2462 24429442 24429082 1.450000e-87 333
11 TraesCS2B01G566900 chr2D 76.546 469 95 13 977 1439 585916351 585916810 2.510000e-60 243
12 TraesCS2B01G566900 chr2D 83.465 254 40 2 134 386 619568651 619568903 4.210000e-58 235
13 TraesCS2B01G566900 chr2D 80.822 219 42 0 1223 1441 619148488 619148706 3.340000e-39 172
14 TraesCS2B01G566900 chr2A 90.300 2103 125 35 1 2076 750557152 750559202 0.000000e+00 2680
15 TraesCS2B01G566900 chr2A 77.371 464 85 16 988 1446 721008561 721008113 8.980000e-65 257
16 TraesCS2B01G566900 chr2A 77.162 451 96 5 991 1440 720060017 720059573 3.230000e-64 255
17 TraesCS2B01G566900 chr2A 83.122 237 40 0 149 385 750208543 750208307 1.520000e-52 217
18 TraesCS2B01G566900 chr2A 81.818 253 46 0 134 386 751233988 751234240 1.970000e-51 213
19 TraesCS2B01G566900 chr2A 81.557 244 42 3 144 386 751168157 751168398 5.520000e-47 198
20 TraesCS2B01G566900 chr2A 80.738 244 44 3 144 386 751029132 751029373 1.190000e-43 187
21 TraesCS2B01G566900 chr5D 83.590 390 47 6 2089 2462 327499365 327499753 1.440000e-92 350
22 TraesCS2B01G566900 chr5D 89.407 236 24 1 2228 2462 152279704 152279939 1.900000e-76 296
23 TraesCS2B01G566900 chr4A 84.282 369 44 9 2107 2462 441960238 441960605 5.180000e-92 348
24 TraesCS2B01G566900 chr6D 83.243 370 47 4 2107 2462 20010665 20011033 2.430000e-85 326
25 TraesCS2B01G566900 chr4D 83.662 355 38 11 2125 2462 310820235 310819884 1.460000e-82 316
26 TraesCS2B01G566900 chr4B 89.407 236 23 2 2228 2462 299557106 299557340 1.900000e-76 296
27 TraesCS2B01G566900 chr6A 84.444 315 32 5 2163 2462 438971526 438971838 6.840000e-76 294
28 TraesCS2B01G566900 chr3D 81.702 235 34 6 2107 2336 82553336 82553106 1.190000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G566900 chr2B 758112059 758114587 2528 False 4671 4671 100.000 1 2529 1 chr2B.!!$F2 2528
1 TraesCS2B01G566900 chr2B 758797695 758799800 2105 True 3184 3184 94.054 1 2098 1 chr2B.!!$R5 2097
2 TraesCS2B01G566900 chr2B 707461713 707462252 539 True 259 259 75.681 988 1532 1 chr2B.!!$R2 544
3 TraesCS2B01G566900 chr2B 707620088 707620647 559 True 219 219 74.609 982 1534 1 chr2B.!!$R3 552
4 TraesCS2B01G566900 chr2D 619405220 619407314 2094 False 2852 2852 91.333 1 2098 1 chr2D.!!$F3 2097
5 TraesCS2B01G566900 chr2A 750557152 750559202 2050 False 2680 2680 90.300 1 2076 1 chr2A.!!$F1 2075

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 178 0.040058 TGTCCTTGATTGGCTGGCAT 59.96 50.0 4.22 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2111 2180 0.03601 ATTTCTCACCCAGAGTGCCG 60.036 55.0 0.0 0.0 46.81 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 175 2.431954 AGATGTCCTTGATTGGCTGG 57.568 50.000 0.00 0.00 0.00 4.85
174 178 0.040058 TGTCCTTGATTGGCTGGCAT 59.960 50.000 4.22 0.00 0.00 4.40
182 186 2.496871 TGATTGGCTGGCATGGTTTAAG 59.503 45.455 4.22 0.00 0.00 1.85
243 247 9.699410 TCCACCAAGATTCAAGATTAACAATAT 57.301 29.630 0.00 0.00 0.00 1.28
364 368 4.201861 GCAGCAAGGAAACACTATTAGAGC 60.202 45.833 0.00 0.00 0.00 4.09
396 400 7.792374 ACATAGTAAGTAATTCATGTGCTGG 57.208 36.000 0.00 0.00 0.00 4.85
399 403 6.992063 AGTAAGTAATTCATGTGCTGGAAG 57.008 37.500 0.00 0.00 0.00 3.46
492 496 8.603181 CATTGCCTGTTATATTTTTGGTTTAGC 58.397 33.333 0.00 0.00 0.00 3.09
512 516 7.715265 TTAGCTAAGTTCAACTTGTCTTCTG 57.285 36.000 13.39 0.00 39.11 3.02
548 552 2.096013 GCTTCGATGAGTTTAGTTGGGC 59.904 50.000 1.89 0.00 0.00 5.36
613 624 9.220767 GTTAAAAAGTGAGGACAGTAATGAGAT 57.779 33.333 0.00 0.00 0.00 2.75
686 697 7.148540 CCTGTCGGATGAAAGTTACGAAATTAA 60.149 37.037 0.00 0.00 35.17 1.40
687 698 8.259049 TGTCGGATGAAAGTTACGAAATTAAT 57.741 30.769 0.00 0.00 35.17 1.40
800 811 6.372381 GCAACTGCCAATTCCAATTTAAATCT 59.628 34.615 0.10 0.00 34.31 2.40
813 824 6.229733 CAATTTAAATCTCCCAAAGCCACAA 58.770 36.000 0.10 0.00 0.00 3.33
835 846 8.017373 CACAAATCTTCACTCGTGTTTGATTAT 58.983 33.333 14.06 6.00 31.46 1.28
1382 1425 1.129251 CACTCATGTCATCGGTTGTGC 59.871 52.381 0.00 0.00 0.00 4.57
1683 1726 4.099881 ACCGAAGTGGACTTTACTGTGTAA 59.900 41.667 0.00 0.00 42.00 2.41
1689 1732 6.231211 AGTGGACTTTACTGTGTAATGAAGG 58.769 40.000 9.35 0.00 0.00 3.46
1710 1753 9.585369 TGAAGGAAATGTGGATAATGCATTATA 57.415 29.630 27.71 15.28 33.37 0.98
1797 1852 9.693739 TTGCTAAGAATAAGGTTTCCATCATAA 57.306 29.630 0.00 0.00 0.00 1.90
1815 1879 9.223099 CCATCATAACATCTCAGTATGCATTAA 57.777 33.333 3.54 0.00 34.76 1.40
1836 1900 3.853355 ATCCTTACCCTGAGATTGCTG 57.147 47.619 0.00 0.00 0.00 4.41
1855 1919 2.357009 CTGTGTGTCAGCTGCTCTTTTT 59.643 45.455 9.47 0.00 37.36 1.94
1894 1958 7.880713 TCAAAATAAAGGCTAAAAATCCAACCC 59.119 33.333 0.00 0.00 0.00 4.11
1895 1959 7.568128 AAATAAAGGCTAAAAATCCAACCCT 57.432 32.000 0.00 0.00 0.00 4.34
1896 1960 7.568128 AATAAAGGCTAAAAATCCAACCCTT 57.432 32.000 0.00 0.00 32.93 3.95
1915 1979 2.647683 TGTGTATGACCAAGTGCCAA 57.352 45.000 0.00 0.00 0.00 4.52
1918 1982 2.621055 GTGTATGACCAAGTGCCAACAA 59.379 45.455 0.00 0.00 0.00 2.83
1926 1990 2.029110 CCAAGTGCCAACAATAACAGGG 60.029 50.000 0.00 0.00 0.00 4.45
1927 1991 1.256812 AGTGCCAACAATAACAGGGC 58.743 50.000 0.00 0.00 44.82 5.19
1930 1994 2.584492 GCCAACAATAACAGGGCATC 57.416 50.000 0.00 0.00 44.01 3.91
1931 1995 2.102578 GCCAACAATAACAGGGCATCT 58.897 47.619 0.00 0.00 44.01 2.90
1932 1996 2.099756 GCCAACAATAACAGGGCATCTC 59.900 50.000 0.00 0.00 44.01 2.75
1933 1997 2.355756 CCAACAATAACAGGGCATCTCG 59.644 50.000 0.00 0.00 0.00 4.04
1989 2057 9.612066 AACACCTTTCAAAATTACATGAACAAT 57.388 25.926 0.00 0.00 35.42 2.71
2005 2073 4.815308 TGAACAATTTTTCCCAAGTGCATG 59.185 37.500 2.00 0.00 0.00 4.06
2006 2074 4.420522 ACAATTTTTCCCAAGTGCATGT 57.579 36.364 0.00 0.00 0.00 3.21
2086 2155 6.937436 AGGAACATTTTTAAACGTGAGACT 57.063 33.333 0.00 0.00 0.00 3.24
2103 2172 9.970553 ACGTGAGACTAATATTATATAGGGTCA 57.029 33.333 10.95 1.42 0.00 4.02
2114 2183 6.770746 TTATATAGGGTCACTCTATTCGGC 57.229 41.667 1.45 0.00 0.00 5.54
2115 2184 2.447408 TAGGGTCACTCTATTCGGCA 57.553 50.000 0.00 0.00 0.00 5.69
2116 2185 0.824759 AGGGTCACTCTATTCGGCAC 59.175 55.000 0.00 0.00 0.00 5.01
2117 2186 0.824759 GGGTCACTCTATTCGGCACT 59.175 55.000 0.00 0.00 0.00 4.40
2118 2187 1.202428 GGGTCACTCTATTCGGCACTC 60.202 57.143 0.00 0.00 0.00 3.51
2119 2188 1.751924 GGTCACTCTATTCGGCACTCT 59.248 52.381 0.00 0.00 0.00 3.24
2120 2189 2.480416 GGTCACTCTATTCGGCACTCTG 60.480 54.545 0.00 0.00 0.00 3.35
2121 2190 1.751351 TCACTCTATTCGGCACTCTGG 59.249 52.381 0.00 0.00 0.00 3.86
2122 2191 1.115467 ACTCTATTCGGCACTCTGGG 58.885 55.000 0.00 0.00 0.00 4.45
2123 2192 1.115467 CTCTATTCGGCACTCTGGGT 58.885 55.000 0.00 0.00 0.00 4.51
2145 2214 9.077885 TGGGTGAGAAATAATTATTATTCAGCC 57.922 33.333 34.26 34.26 45.25 4.85
2146 2215 8.523658 GGGTGAGAAATAATTATTATTCAGCCC 58.476 37.037 32.92 28.32 42.84 5.19
2147 2216 8.523658 GGTGAGAAATAATTATTATTCAGCCCC 58.476 37.037 25.41 18.22 34.88 5.80
2148 2217 9.301897 GTGAGAAATAATTATTATTCAGCCCCT 57.698 33.333 17.97 2.89 34.88 4.79
2149 2218 9.520515 TGAGAAATAATTATTATTCAGCCCCTC 57.479 33.333 11.07 10.06 34.88 4.30
2150 2219 9.520515 GAGAAATAATTATTATTCAGCCCCTCA 57.479 33.333 11.07 0.00 34.88 3.86
2151 2220 9.881773 AGAAATAATTATTATTCAGCCCCTCAA 57.118 29.630 11.07 0.00 34.88 3.02
2159 2228 7.732222 ATTATTCAGCCCCTCAATTTTAACA 57.268 32.000 0.00 0.00 0.00 2.41
2160 2229 4.864704 TTCAGCCCCTCAATTTTAACAC 57.135 40.909 0.00 0.00 0.00 3.32
2161 2230 3.161866 TCAGCCCCTCAATTTTAACACC 58.838 45.455 0.00 0.00 0.00 4.16
2162 2231 2.896685 CAGCCCCTCAATTTTAACACCA 59.103 45.455 0.00 0.00 0.00 4.17
2163 2232 3.323403 CAGCCCCTCAATTTTAACACCAA 59.677 43.478 0.00 0.00 0.00 3.67
2164 2233 4.020307 CAGCCCCTCAATTTTAACACCAAT 60.020 41.667 0.00 0.00 0.00 3.16
2165 2234 4.020307 AGCCCCTCAATTTTAACACCAATG 60.020 41.667 0.00 0.00 0.00 2.82
2166 2235 4.252878 CCCCTCAATTTTAACACCAATGC 58.747 43.478 0.00 0.00 0.00 3.56
2167 2236 4.262808 CCCCTCAATTTTAACACCAATGCA 60.263 41.667 0.00 0.00 0.00 3.96
2168 2237 4.690280 CCCTCAATTTTAACACCAATGCAC 59.310 41.667 0.00 0.00 0.00 4.57
2169 2238 4.690280 CCTCAATTTTAACACCAATGCACC 59.310 41.667 0.00 0.00 0.00 5.01
2170 2239 4.302455 TCAATTTTAACACCAATGCACCG 58.698 39.130 0.00 0.00 0.00 4.94
2171 2240 4.054671 CAATTTTAACACCAATGCACCGT 58.945 39.130 0.00 0.00 0.00 4.83
2172 2241 5.009710 TCAATTTTAACACCAATGCACCGTA 59.990 36.000 0.00 0.00 0.00 4.02
2173 2242 5.652994 ATTTTAACACCAATGCACCGTAT 57.347 34.783 0.00 0.00 0.00 3.06
2174 2243 5.455056 TTTTAACACCAATGCACCGTATT 57.545 34.783 0.00 0.00 0.00 1.89
2175 2244 5.455056 TTTAACACCAATGCACCGTATTT 57.545 34.783 0.00 0.00 0.00 1.40
2176 2245 5.455056 TTAACACCAATGCACCGTATTTT 57.545 34.783 0.00 0.00 0.00 1.82
2177 2246 4.329462 AACACCAATGCACCGTATTTTT 57.671 36.364 0.00 0.00 0.00 1.94
2178 2247 5.455056 AACACCAATGCACCGTATTTTTA 57.545 34.783 0.00 0.00 0.00 1.52
2179 2248 5.652994 ACACCAATGCACCGTATTTTTAT 57.347 34.783 0.00 0.00 0.00 1.40
2180 2249 5.406649 ACACCAATGCACCGTATTTTTATG 58.593 37.500 0.00 0.00 0.00 1.90
2181 2250 5.047660 ACACCAATGCACCGTATTTTTATGT 60.048 36.000 0.00 0.00 0.00 2.29
2182 2251 5.866633 CACCAATGCACCGTATTTTTATGTT 59.133 36.000 0.00 0.00 0.00 2.71
2183 2252 6.034470 CACCAATGCACCGTATTTTTATGTTC 59.966 38.462 0.00 0.00 0.00 3.18
2184 2253 5.518487 CCAATGCACCGTATTTTTATGTTCC 59.482 40.000 0.00 0.00 0.00 3.62
2185 2254 4.343811 TGCACCGTATTTTTATGTTCCG 57.656 40.909 0.00 0.00 0.00 4.30
2186 2255 3.752222 TGCACCGTATTTTTATGTTCCGT 59.248 39.130 0.00 0.00 0.00 4.69
2187 2256 4.934001 TGCACCGTATTTTTATGTTCCGTA 59.066 37.500 0.00 0.00 0.00 4.02
2188 2257 5.410746 TGCACCGTATTTTTATGTTCCGTAA 59.589 36.000 0.00 0.00 0.00 3.18
2189 2258 6.093771 TGCACCGTATTTTTATGTTCCGTAAT 59.906 34.615 0.00 0.00 0.00 1.89
2190 2259 6.968335 GCACCGTATTTTTATGTTCCGTAATT 59.032 34.615 0.00 0.00 0.00 1.40
2191 2260 7.485595 GCACCGTATTTTTATGTTCCGTAATTT 59.514 33.333 0.00 0.00 0.00 1.82
2192 2261 9.344309 CACCGTATTTTTATGTTCCGTAATTTT 57.656 29.630 0.00 0.00 0.00 1.82
2193 2262 9.911138 ACCGTATTTTTATGTTCCGTAATTTTT 57.089 25.926 0.00 0.00 0.00 1.94
2221 2290 8.430063 TCTTACTTTATACGCAAAAAGAGAACG 58.570 33.333 10.01 0.00 36.43 3.95
2222 2291 6.535274 ACTTTATACGCAAAAAGAGAACGT 57.465 33.333 10.01 0.00 40.53 3.99
2223 2292 7.642071 ACTTTATACGCAAAAAGAGAACGTA 57.358 32.000 10.01 0.00 42.62 3.57
2224 2293 8.075593 ACTTTATACGCAAAAAGAGAACGTAA 57.924 30.769 10.01 0.00 41.86 3.18
2225 2294 8.219105 ACTTTATACGCAAAAAGAGAACGTAAG 58.781 33.333 10.01 0.00 41.86 2.34
2226 2295 7.872163 TTATACGCAAAAAGAGAACGTAAGA 57.128 32.000 0.00 0.00 41.86 2.10
2227 2296 4.710528 ACGCAAAAAGAGAACGTAAGAG 57.289 40.909 0.00 0.00 43.62 2.85
2228 2297 3.059800 ACGCAAAAAGAGAACGTAAGAGC 60.060 43.478 0.00 0.00 43.62 4.09
2229 2298 3.664537 CGCAAAAAGAGAACGTAAGAGCC 60.665 47.826 0.00 0.00 43.62 4.70
2230 2299 3.250040 GCAAAAAGAGAACGTAAGAGCCA 59.750 43.478 0.00 0.00 43.62 4.75
2231 2300 4.083271 GCAAAAAGAGAACGTAAGAGCCAT 60.083 41.667 0.00 0.00 43.62 4.40
2232 2301 5.121768 GCAAAAAGAGAACGTAAGAGCCATA 59.878 40.000 0.00 0.00 43.62 2.74
2233 2302 6.348213 GCAAAAAGAGAACGTAAGAGCCATAA 60.348 38.462 0.00 0.00 43.62 1.90
2234 2303 7.581476 CAAAAAGAGAACGTAAGAGCCATAAA 58.419 34.615 0.00 0.00 43.62 1.40
2235 2304 7.739498 AAAAGAGAACGTAAGAGCCATAAAA 57.261 32.000 0.00 0.00 43.62 1.52
2236 2305 7.739498 AAAGAGAACGTAAGAGCCATAAAAA 57.261 32.000 0.00 0.00 43.62 1.94
2279 2348 9.934190 AAAATTACGAACGTAAAAACATAGTGT 57.066 25.926 20.47 1.41 42.82 3.55
2349 2418 9.922305 TTTTGTTTTCTTATGCCAAATTTTACG 57.078 25.926 0.00 0.00 0.00 3.18
2350 2419 8.649973 TTGTTTTCTTATGCCAAATTTTACGT 57.350 26.923 0.00 0.00 0.00 3.57
2351 2420 9.745880 TTGTTTTCTTATGCCAAATTTTACGTA 57.254 25.926 0.00 0.00 0.00 3.57
2352 2421 9.400638 TGTTTTCTTATGCCAAATTTTACGTAG 57.599 29.630 0.00 0.00 0.00 3.51
2354 2423 8.958175 TTTCTTATGCCAAATTTTACGTAGTG 57.042 30.769 0.00 0.00 45.73 2.74
2355 2424 7.908827 TCTTATGCCAAATTTTACGTAGTGA 57.091 32.000 0.00 0.00 45.73 3.41
2356 2425 7.745015 TCTTATGCCAAATTTTACGTAGTGAC 58.255 34.615 0.00 0.00 45.73 3.67
2357 2426 7.604927 TCTTATGCCAAATTTTACGTAGTGACT 59.395 33.333 0.00 0.00 45.73 3.41
2358 2427 8.774890 TTATGCCAAATTTTACGTAGTGACTA 57.225 30.769 0.00 0.00 45.73 2.59
2359 2428 7.675962 ATGCCAAATTTTACGTAGTGACTAA 57.324 32.000 0.00 0.00 45.73 2.24
2360 2429 7.493743 TGCCAAATTTTACGTAGTGACTAAA 57.506 32.000 0.00 0.00 45.73 1.85
2361 2430 7.354257 TGCCAAATTTTACGTAGTGACTAAAC 58.646 34.615 0.00 0.00 45.73 2.01
2362 2431 7.012138 TGCCAAATTTTACGTAGTGACTAAACA 59.988 33.333 0.00 0.00 45.73 2.83
2363 2432 8.019094 GCCAAATTTTACGTAGTGACTAAACAT 58.981 33.333 0.00 0.00 45.73 2.71
2364 2433 9.325150 CCAAATTTTACGTAGTGACTAAACATG 57.675 33.333 0.00 0.00 45.73 3.21
2369 2438 8.821147 TTTACGTAGTGACTAAACATGAATGT 57.179 30.769 0.00 0.00 45.73 2.71
2370 2439 9.911138 TTTACGTAGTGACTAAACATGAATGTA 57.089 29.630 0.00 0.00 45.73 2.29
2371 2440 9.911138 TTACGTAGTGACTAAACATGAATGTAA 57.089 29.630 0.00 0.00 45.73 2.41
2372 2441 8.997621 ACGTAGTGACTAAACATGAATGTAAT 57.002 30.769 0.00 0.00 42.51 1.89
2373 2442 9.431887 ACGTAGTGACTAAACATGAATGTAATT 57.568 29.630 0.00 0.00 42.51 1.40
2421 2490 7.548196 TTTATGAAATGGTCGTGAGATTACC 57.452 36.000 0.00 0.00 45.19 2.85
2422 2491 4.819105 TGAAATGGTCGTGAGATTACCT 57.181 40.909 0.00 0.00 45.19 3.08
2423 2492 5.160607 TGAAATGGTCGTGAGATTACCTT 57.839 39.130 0.00 0.00 45.19 3.50
2424 2493 4.935205 TGAAATGGTCGTGAGATTACCTTG 59.065 41.667 0.00 0.00 45.19 3.61
2425 2494 3.543680 ATGGTCGTGAGATTACCTTGG 57.456 47.619 0.00 0.00 45.19 3.61
2426 2495 1.553248 TGGTCGTGAGATTACCTTGGG 59.447 52.381 0.00 0.00 45.19 4.12
2427 2496 1.553704 GGTCGTGAGATTACCTTGGGT 59.446 52.381 0.00 0.00 45.19 4.51
2428 2497 2.618053 GTCGTGAGATTACCTTGGGTG 58.382 52.381 0.00 0.00 45.19 4.61
2429 2498 2.232941 GTCGTGAGATTACCTTGGGTGA 59.767 50.000 0.00 0.00 45.19 4.02
2430 2499 2.901192 TCGTGAGATTACCTTGGGTGAA 59.099 45.455 0.00 0.00 33.79 3.18
2431 2500 3.056107 TCGTGAGATTACCTTGGGTGAAG 60.056 47.826 0.00 0.00 33.79 3.02
2432 2501 3.056107 CGTGAGATTACCTTGGGTGAAGA 60.056 47.826 0.00 0.00 36.19 2.87
2433 2502 4.562757 CGTGAGATTACCTTGGGTGAAGAA 60.563 45.833 0.00 0.00 36.19 2.52
2434 2503 5.501156 GTGAGATTACCTTGGGTGAAGAAT 58.499 41.667 0.00 0.00 36.19 2.40
2435 2504 6.629515 CGTGAGATTACCTTGGGTGAAGAATA 60.630 42.308 0.00 0.00 36.19 1.75
2436 2505 7.110155 GTGAGATTACCTTGGGTGAAGAATAA 58.890 38.462 0.00 0.00 36.19 1.40
2437 2506 7.065923 GTGAGATTACCTTGGGTGAAGAATAAC 59.934 40.741 0.00 0.00 36.19 1.89
2438 2507 7.037586 TGAGATTACCTTGGGTGAAGAATAACT 60.038 37.037 0.00 0.00 36.19 2.24
2439 2508 7.699878 AGATTACCTTGGGTGAAGAATAACTT 58.300 34.615 0.00 0.00 38.14 2.66
2440 2509 8.832735 AGATTACCTTGGGTGAAGAATAACTTA 58.167 33.333 0.00 0.00 36.67 2.24
2441 2510 9.628500 GATTACCTTGGGTGAAGAATAACTTAT 57.372 33.333 0.00 0.00 36.67 1.73
2442 2511 9.990868 ATTACCTTGGGTGAAGAATAACTTATT 57.009 29.630 0.00 0.00 36.67 1.40
2443 2512 7.939784 ACCTTGGGTGAAGAATAACTTATTC 57.060 36.000 12.07 12.07 38.76 1.75
2444 2513 7.699878 ACCTTGGGTGAAGAATAACTTATTCT 58.300 34.615 15.62 15.62 44.74 2.40
2445 2514 8.832735 ACCTTGGGTGAAGAATAACTTATTCTA 58.167 33.333 19.92 7.06 43.39 2.10
2455 2524 6.896883 GAATAACTTATTCTACACCCTGGGT 58.103 40.000 14.05 14.05 41.00 4.51
2457 2526 7.365295 GAATAACTTATTCTACACCCTGGGTGA 60.365 40.741 44.10 28.35 46.15 4.02
2465 2534 2.868504 ACCCTGGGTGATGAACTGT 58.131 52.632 19.82 0.00 32.98 3.55
2466 2535 0.693049 ACCCTGGGTGATGAACTGTC 59.307 55.000 19.82 0.00 32.98 3.51
2467 2536 0.987294 CCCTGGGTGATGAACTGTCT 59.013 55.000 3.97 0.00 0.00 3.41
2468 2537 1.339438 CCCTGGGTGATGAACTGTCTG 60.339 57.143 3.97 0.00 0.00 3.51
2469 2538 1.446907 CTGGGTGATGAACTGTCTGC 58.553 55.000 0.00 0.00 0.00 4.26
2470 2539 0.764271 TGGGTGATGAACTGTCTGCA 59.236 50.000 0.00 0.00 0.00 4.41
2471 2540 1.160137 GGGTGATGAACTGTCTGCAC 58.840 55.000 0.00 0.00 0.00 4.57
2472 2541 1.271054 GGGTGATGAACTGTCTGCACT 60.271 52.381 0.00 0.00 32.53 4.40
2473 2542 2.498167 GGTGATGAACTGTCTGCACTT 58.502 47.619 0.00 0.00 32.53 3.16
2474 2543 2.880890 GGTGATGAACTGTCTGCACTTT 59.119 45.455 0.00 0.00 32.53 2.66
2475 2544 3.316308 GGTGATGAACTGTCTGCACTTTT 59.684 43.478 0.00 0.00 32.53 2.27
2476 2545 4.202050 GGTGATGAACTGTCTGCACTTTTT 60.202 41.667 0.00 0.00 32.53 1.94
2477 2546 4.736793 GTGATGAACTGTCTGCACTTTTTG 59.263 41.667 0.00 0.00 0.00 2.44
2478 2547 4.639755 TGATGAACTGTCTGCACTTTTTGA 59.360 37.500 0.00 0.00 0.00 2.69
2479 2548 5.125257 TGATGAACTGTCTGCACTTTTTGAA 59.875 36.000 0.00 0.00 0.00 2.69
2480 2549 4.732784 TGAACTGTCTGCACTTTTTGAAC 58.267 39.130 0.00 0.00 0.00 3.18
2481 2550 4.458989 TGAACTGTCTGCACTTTTTGAACT 59.541 37.500 0.00 0.00 0.00 3.01
2482 2551 5.645929 TGAACTGTCTGCACTTTTTGAACTA 59.354 36.000 0.00 0.00 0.00 2.24
2483 2552 6.150307 TGAACTGTCTGCACTTTTTGAACTAA 59.850 34.615 0.00 0.00 0.00 2.24
2484 2553 6.509418 ACTGTCTGCACTTTTTGAACTAAA 57.491 33.333 0.00 0.00 0.00 1.85
2485 2554 6.919721 ACTGTCTGCACTTTTTGAACTAAAA 58.080 32.000 0.00 0.00 36.51 1.52
2486 2555 7.547227 ACTGTCTGCACTTTTTGAACTAAAAT 58.453 30.769 0.00 0.00 38.03 1.82
2487 2556 8.682710 ACTGTCTGCACTTTTTGAACTAAAATA 58.317 29.630 0.00 0.00 38.03 1.40
2488 2557 9.683069 CTGTCTGCACTTTTTGAACTAAAATAT 57.317 29.630 0.00 0.00 38.03 1.28
2489 2558 9.462174 TGTCTGCACTTTTTGAACTAAAATATG 57.538 29.630 0.00 0.00 38.03 1.78
2490 2559 9.677567 GTCTGCACTTTTTGAACTAAAATATGA 57.322 29.630 0.00 0.00 38.03 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 175 7.926018 CACCCCTTTAATTATCTTAAACCATGC 59.074 37.037 0.00 0.00 0.00 4.06
174 178 6.381707 GCCACCCCTTTAATTATCTTAAACCA 59.618 38.462 0.00 0.00 0.00 3.67
182 186 4.584743 CCTCTTGCCACCCCTTTAATTATC 59.415 45.833 0.00 0.00 0.00 1.75
243 247 8.454106 GTTGCTTGCTTTAAGATCTCTATGAAA 58.546 33.333 0.00 0.00 38.76 2.69
396 400 5.918608 TGAAGCAATATCCTAGACACCTTC 58.081 41.667 0.00 0.00 0.00 3.46
399 403 6.529220 AGATTGAAGCAATATCCTAGACACC 58.471 40.000 0.00 0.00 33.90 4.16
492 496 7.041508 AGCATTCAGAAGACAAGTTGAACTTAG 60.042 37.037 10.63 7.93 36.03 2.18
512 516 4.864916 TCGAAGCATTTCACTAGCATTC 57.135 40.909 0.00 0.00 32.67 2.67
686 697 7.568349 TGAGCCTCTGAACAAACATAAGATAT 58.432 34.615 0.00 0.00 0.00 1.63
687 698 6.946340 TGAGCCTCTGAACAAACATAAGATA 58.054 36.000 0.00 0.00 0.00 1.98
708 719 3.123804 ACGCGCATCCTAAATTACTGAG 58.876 45.455 5.73 0.00 0.00 3.35
800 811 2.627699 GTGAAGATTTGTGGCTTTGGGA 59.372 45.455 0.00 0.00 0.00 4.37
813 824 7.905604 TCATAATCAAACACGAGTGAAGATT 57.094 32.000 10.50 15.57 35.24 2.40
835 846 1.820519 GCAGGGAAGCATGAAACATCA 59.179 47.619 0.00 0.00 0.00 3.07
919 930 3.008704 GGTCTTACTAAGGGGCAGTTTGA 59.991 47.826 0.00 0.00 0.00 2.69
1263 1306 2.233271 CAGCAATTGTTGAGTCCACCT 58.767 47.619 16.53 0.00 0.00 4.00
1382 1425 9.350357 CAAAGTGATTTCATTCTCCAACATAAG 57.650 33.333 0.00 0.00 0.00 1.73
1683 1726 6.989155 ATGCATTATCCACATTTCCTTCAT 57.011 33.333 0.00 0.00 0.00 2.57
1797 1852 9.277783 GTAAGGATTTAATGCATACTGAGATGT 57.722 33.333 0.00 0.00 0.00 3.06
1815 1879 3.525199 ACAGCAATCTCAGGGTAAGGATT 59.475 43.478 0.00 0.00 0.00 3.01
1819 1883 3.005554 CACACAGCAATCTCAGGGTAAG 58.994 50.000 0.00 0.00 0.00 2.34
1895 1959 2.621055 GTTGGCACTTGGTCATACACAA 59.379 45.455 0.00 0.00 0.00 3.33
1896 1960 2.226330 GTTGGCACTTGGTCATACACA 58.774 47.619 0.00 0.00 0.00 3.72
1915 1979 3.470709 CATCGAGATGCCCTGTTATTGT 58.529 45.455 0.00 0.00 31.39 2.71
2062 2130 9.545105 TTAGTCTCACGTTTAAAAATGTTCCTA 57.455 29.630 0.00 0.00 36.05 2.94
2098 2167 0.824759 AGTGCCGAATAGAGTGACCC 59.175 55.000 0.00 0.00 0.00 4.46
2099 2168 1.751924 AGAGTGCCGAATAGAGTGACC 59.248 52.381 0.00 0.00 0.00 4.02
2100 2169 2.480416 CCAGAGTGCCGAATAGAGTGAC 60.480 54.545 0.00 0.00 0.00 3.67
2101 2170 1.751351 CCAGAGTGCCGAATAGAGTGA 59.249 52.381 0.00 0.00 0.00 3.41
2102 2171 1.202463 CCCAGAGTGCCGAATAGAGTG 60.202 57.143 0.00 0.00 0.00 3.51
2103 2172 1.115467 CCCAGAGTGCCGAATAGAGT 58.885 55.000 0.00 0.00 0.00 3.24
2104 2173 1.115467 ACCCAGAGTGCCGAATAGAG 58.885 55.000 0.00 0.00 0.00 2.43
2105 2174 0.824109 CACCCAGAGTGCCGAATAGA 59.176 55.000 0.00 0.00 40.28 1.98
2106 2175 0.824109 TCACCCAGAGTGCCGAATAG 59.176 55.000 0.00 0.00 46.81 1.73
2107 2176 0.824109 CTCACCCAGAGTGCCGAATA 59.176 55.000 0.00 0.00 46.81 1.75
2108 2177 0.904865 TCTCACCCAGAGTGCCGAAT 60.905 55.000 0.00 0.00 46.81 3.34
2109 2178 1.118965 TTCTCACCCAGAGTGCCGAA 61.119 55.000 0.00 0.00 46.81 4.30
2110 2179 1.118965 TTTCTCACCCAGAGTGCCGA 61.119 55.000 0.00 0.00 46.81 5.54
2111 2180 0.036010 ATTTCTCACCCAGAGTGCCG 60.036 55.000 0.00 0.00 46.81 5.69
2112 2181 3.350219 TTATTTCTCACCCAGAGTGCC 57.650 47.619 0.00 0.00 46.81 5.01
2113 2182 7.573968 AATAATTATTTCTCACCCAGAGTGC 57.426 36.000 4.81 0.00 46.81 4.40
2119 2188 9.077885 GGCTGAATAATAATTATTTCTCACCCA 57.922 33.333 15.64 5.01 36.04 4.51
2120 2189 8.523658 GGGCTGAATAATAATTATTTCTCACCC 58.476 37.037 23.08 23.08 36.04 4.61
2121 2190 8.523658 GGGGCTGAATAATAATTATTTCTCACC 58.476 37.037 15.64 17.45 36.04 4.02
2122 2191 9.301897 AGGGGCTGAATAATAATTATTTCTCAC 57.698 33.333 15.64 11.85 36.04 3.51
2123 2192 9.520515 GAGGGGCTGAATAATAATTATTTCTCA 57.479 33.333 15.64 15.64 36.04 3.27
2124 2193 9.520515 TGAGGGGCTGAATAATAATTATTTCTC 57.479 33.333 15.64 12.44 36.04 2.87
2125 2194 9.881773 TTGAGGGGCTGAATAATAATTATTTCT 57.118 29.630 15.64 4.02 36.04 2.52
2133 2202 9.261035 TGTTAAAATTGAGGGGCTGAATAATAA 57.739 29.630 0.00 0.00 0.00 1.40
2134 2203 8.691797 GTGTTAAAATTGAGGGGCTGAATAATA 58.308 33.333 0.00 0.00 0.00 0.98
2135 2204 7.364673 GGTGTTAAAATTGAGGGGCTGAATAAT 60.365 37.037 0.00 0.00 0.00 1.28
2136 2205 6.071051 GGTGTTAAAATTGAGGGGCTGAATAA 60.071 38.462 0.00 0.00 0.00 1.40
2137 2206 5.420739 GGTGTTAAAATTGAGGGGCTGAATA 59.579 40.000 0.00 0.00 0.00 1.75
2138 2207 4.222810 GGTGTTAAAATTGAGGGGCTGAAT 59.777 41.667 0.00 0.00 0.00 2.57
2139 2208 3.576550 GGTGTTAAAATTGAGGGGCTGAA 59.423 43.478 0.00 0.00 0.00 3.02
2140 2209 3.161866 GGTGTTAAAATTGAGGGGCTGA 58.838 45.455 0.00 0.00 0.00 4.26
2141 2210 2.896685 TGGTGTTAAAATTGAGGGGCTG 59.103 45.455 0.00 0.00 0.00 4.85
2142 2211 3.252554 TGGTGTTAAAATTGAGGGGCT 57.747 42.857 0.00 0.00 0.00 5.19
2143 2212 4.252878 CATTGGTGTTAAAATTGAGGGGC 58.747 43.478 0.00 0.00 0.00 5.80
2144 2213 4.252878 GCATTGGTGTTAAAATTGAGGGG 58.747 43.478 0.00 0.00 0.00 4.79
2145 2214 4.690280 GTGCATTGGTGTTAAAATTGAGGG 59.310 41.667 0.00 0.00 0.00 4.30
2146 2215 4.690280 GGTGCATTGGTGTTAAAATTGAGG 59.310 41.667 0.00 0.00 0.00 3.86
2147 2216 4.385447 CGGTGCATTGGTGTTAAAATTGAG 59.615 41.667 0.00 0.00 0.00 3.02
2148 2217 4.202161 ACGGTGCATTGGTGTTAAAATTGA 60.202 37.500 0.00 0.00 0.00 2.57
2149 2218 4.054671 ACGGTGCATTGGTGTTAAAATTG 58.945 39.130 0.00 0.00 0.00 2.32
2150 2219 4.329462 ACGGTGCATTGGTGTTAAAATT 57.671 36.364 0.00 0.00 0.00 1.82
2151 2220 5.652994 ATACGGTGCATTGGTGTTAAAAT 57.347 34.783 0.00 0.00 0.00 1.82
2152 2221 5.455056 AATACGGTGCATTGGTGTTAAAA 57.545 34.783 0.00 0.00 0.00 1.52
2153 2222 5.455056 AAATACGGTGCATTGGTGTTAAA 57.545 34.783 0.00 0.00 0.00 1.52
2154 2223 5.455056 AAAATACGGTGCATTGGTGTTAA 57.545 34.783 0.00 0.00 0.00 2.01
2155 2224 5.455056 AAAAATACGGTGCATTGGTGTTA 57.545 34.783 0.00 0.00 0.00 2.41
2156 2225 4.329462 AAAAATACGGTGCATTGGTGTT 57.671 36.364 0.00 0.00 0.00 3.32
2157 2226 5.047660 ACATAAAAATACGGTGCATTGGTGT 60.048 36.000 0.00 0.00 0.00 4.16
2158 2227 5.406649 ACATAAAAATACGGTGCATTGGTG 58.593 37.500 0.00 0.00 0.00 4.17
2159 2228 5.652994 ACATAAAAATACGGTGCATTGGT 57.347 34.783 0.00 0.00 0.00 3.67
2160 2229 5.518487 GGAACATAAAAATACGGTGCATTGG 59.482 40.000 0.00 0.00 0.00 3.16
2161 2230 5.229052 CGGAACATAAAAATACGGTGCATTG 59.771 40.000 0.00 0.00 0.00 2.82
2162 2231 5.106078 ACGGAACATAAAAATACGGTGCATT 60.106 36.000 0.00 0.00 0.00 3.56
2163 2232 4.396790 ACGGAACATAAAAATACGGTGCAT 59.603 37.500 0.00 0.00 0.00 3.96
2164 2233 3.752222 ACGGAACATAAAAATACGGTGCA 59.248 39.130 0.00 0.00 0.00 4.57
2165 2234 4.345271 ACGGAACATAAAAATACGGTGC 57.655 40.909 0.00 0.00 0.00 5.01
2166 2235 8.898983 AAATTACGGAACATAAAAATACGGTG 57.101 30.769 0.00 0.00 0.00 4.94
2167 2236 9.911138 AAAAATTACGGAACATAAAAATACGGT 57.089 25.926 0.00 0.00 0.00 4.83
2195 2264 8.430063 CGTTCTCTTTTTGCGTATAAAGTAAGA 58.570 33.333 14.06 9.10 33.97 2.10
2196 2265 8.219105 ACGTTCTCTTTTTGCGTATAAAGTAAG 58.781 33.333 14.06 7.32 33.97 2.34
2197 2266 8.075593 ACGTTCTCTTTTTGCGTATAAAGTAA 57.924 30.769 14.06 8.70 33.97 2.24
2198 2267 7.642071 ACGTTCTCTTTTTGCGTATAAAGTA 57.358 32.000 14.06 4.09 33.97 2.24
2199 2268 6.535274 ACGTTCTCTTTTTGCGTATAAAGT 57.465 33.333 14.06 0.00 33.97 2.66
2200 2269 8.430063 TCTTACGTTCTCTTTTTGCGTATAAAG 58.570 33.333 9.54 9.54 37.76 1.85
2201 2270 8.296799 TCTTACGTTCTCTTTTTGCGTATAAA 57.703 30.769 0.00 0.00 37.76 1.40
2202 2271 7.411157 GCTCTTACGTTCTCTTTTTGCGTATAA 60.411 37.037 0.00 0.00 37.76 0.98
2203 2272 6.034256 GCTCTTACGTTCTCTTTTTGCGTATA 59.966 38.462 0.00 0.00 37.76 1.47
2204 2273 5.163982 GCTCTTACGTTCTCTTTTTGCGTAT 60.164 40.000 0.00 0.00 37.76 3.06
2205 2274 4.149396 GCTCTTACGTTCTCTTTTTGCGTA 59.851 41.667 0.00 0.00 37.05 4.42
2206 2275 3.059800 GCTCTTACGTTCTCTTTTTGCGT 60.060 43.478 0.00 0.00 39.23 5.24
2207 2276 3.470562 GCTCTTACGTTCTCTTTTTGCG 58.529 45.455 0.00 0.00 0.00 4.85
2208 2277 3.250040 TGGCTCTTACGTTCTCTTTTTGC 59.750 43.478 0.00 0.00 0.00 3.68
2209 2278 5.613358 ATGGCTCTTACGTTCTCTTTTTG 57.387 39.130 0.00 0.00 0.00 2.44
2210 2279 7.739498 TTTATGGCTCTTACGTTCTCTTTTT 57.261 32.000 0.00 0.00 0.00 1.94
2211 2280 7.739498 TTTTATGGCTCTTACGTTCTCTTTT 57.261 32.000 0.00 0.00 0.00 2.27
2212 2281 7.739498 TTTTTATGGCTCTTACGTTCTCTTT 57.261 32.000 0.00 0.00 0.00 2.52
2253 2322 9.934190 ACACTATGTTTTTACGTTCGTAATTTT 57.066 25.926 16.49 5.61 31.71 1.82
2323 2392 9.922305 CGTAAAATTTGGCATAAGAAAACAAAA 57.078 25.926 0.00 0.00 35.06 2.44
2324 2393 9.099454 ACGTAAAATTTGGCATAAGAAAACAAA 57.901 25.926 0.00 0.00 35.76 2.83
2325 2394 8.649973 ACGTAAAATTTGGCATAAGAAAACAA 57.350 26.923 0.00 0.00 0.00 2.83
2326 2395 9.400638 CTACGTAAAATTTGGCATAAGAAAACA 57.599 29.630 0.00 0.00 0.00 2.83
2327 2396 9.401873 ACTACGTAAAATTTGGCATAAGAAAAC 57.598 29.630 0.00 0.00 0.00 2.43
2328 2397 9.400638 CACTACGTAAAATTTGGCATAAGAAAA 57.599 29.630 0.00 0.00 0.00 2.29
2329 2398 8.784994 TCACTACGTAAAATTTGGCATAAGAAA 58.215 29.630 0.00 0.00 0.00 2.52
2330 2399 8.231837 GTCACTACGTAAAATTTGGCATAAGAA 58.768 33.333 0.00 0.00 0.00 2.52
2331 2400 7.604927 AGTCACTACGTAAAATTTGGCATAAGA 59.395 33.333 0.00 0.00 0.00 2.10
2332 2401 7.748847 AGTCACTACGTAAAATTTGGCATAAG 58.251 34.615 0.00 0.00 0.00 1.73
2333 2402 7.675962 AGTCACTACGTAAAATTTGGCATAA 57.324 32.000 0.00 0.00 0.00 1.90
2334 2403 8.774890 TTAGTCACTACGTAAAATTTGGCATA 57.225 30.769 0.00 0.00 0.00 3.14
2335 2404 7.675962 TTAGTCACTACGTAAAATTTGGCAT 57.324 32.000 0.00 0.00 0.00 4.40
2336 2405 7.012138 TGTTTAGTCACTACGTAAAATTTGGCA 59.988 33.333 0.00 0.00 0.00 4.92
2337 2406 7.354257 TGTTTAGTCACTACGTAAAATTTGGC 58.646 34.615 0.00 0.00 0.00 4.52
2338 2407 9.325150 CATGTTTAGTCACTACGTAAAATTTGG 57.675 33.333 0.00 0.00 0.00 3.28
2343 2412 9.263538 ACATTCATGTTTAGTCACTACGTAAAA 57.736 29.630 0.00 0.00 37.90 1.52
2344 2413 8.821147 ACATTCATGTTTAGTCACTACGTAAA 57.179 30.769 0.00 0.00 37.90 2.01
2345 2414 9.911138 TTACATTCATGTTTAGTCACTACGTAA 57.089 29.630 0.00 0.00 41.97 3.18
2347 2416 8.997621 ATTACATTCATGTTTAGTCACTACGT 57.002 30.769 0.00 0.00 41.97 3.57
2395 2464 9.268268 GGTAATCTCACGACCATTTCATAAATA 57.732 33.333 0.00 0.00 33.16 1.40
2396 2465 7.993183 AGGTAATCTCACGACCATTTCATAAAT 59.007 33.333 0.00 0.00 35.56 1.40
2397 2466 7.335627 AGGTAATCTCACGACCATTTCATAAA 58.664 34.615 0.00 0.00 35.56 1.40
2398 2467 6.884832 AGGTAATCTCACGACCATTTCATAA 58.115 36.000 0.00 0.00 35.56 1.90
2399 2468 6.479972 AGGTAATCTCACGACCATTTCATA 57.520 37.500 0.00 0.00 35.56 2.15
2400 2469 5.359194 AGGTAATCTCACGACCATTTCAT 57.641 39.130 0.00 0.00 35.56 2.57
2401 2470 4.819105 AGGTAATCTCACGACCATTTCA 57.181 40.909 0.00 0.00 35.56 2.69
2402 2471 4.332819 CCAAGGTAATCTCACGACCATTTC 59.667 45.833 0.00 0.00 35.56 2.17
2403 2472 4.261801 CCAAGGTAATCTCACGACCATTT 58.738 43.478 0.00 0.00 35.56 2.32
2404 2473 3.370527 CCCAAGGTAATCTCACGACCATT 60.371 47.826 0.00 0.00 35.56 3.16
2405 2474 2.170607 CCCAAGGTAATCTCACGACCAT 59.829 50.000 0.00 0.00 35.56 3.55
2406 2475 1.553248 CCCAAGGTAATCTCACGACCA 59.447 52.381 0.00 0.00 35.56 4.02
2407 2476 1.553704 ACCCAAGGTAATCTCACGACC 59.446 52.381 0.00 0.00 32.11 4.79
2408 2477 2.232941 TCACCCAAGGTAATCTCACGAC 59.767 50.000 0.00 0.00 32.11 4.34
2409 2478 2.531771 TCACCCAAGGTAATCTCACGA 58.468 47.619 0.00 0.00 32.11 4.35
2410 2479 3.056107 TCTTCACCCAAGGTAATCTCACG 60.056 47.826 0.00 0.00 32.11 4.35
2411 2480 4.553330 TCTTCACCCAAGGTAATCTCAC 57.447 45.455 0.00 0.00 32.11 3.51
2412 2481 5.779241 ATTCTTCACCCAAGGTAATCTCA 57.221 39.130 0.00 0.00 32.11 3.27
2413 2482 7.339482 AGTTATTCTTCACCCAAGGTAATCTC 58.661 38.462 0.00 0.00 32.11 2.75
2414 2483 7.272144 AGTTATTCTTCACCCAAGGTAATCT 57.728 36.000 0.00 0.00 32.11 2.40
2415 2484 7.939784 AAGTTATTCTTCACCCAAGGTAATC 57.060 36.000 0.00 0.00 32.11 1.75
2416 2485 9.990868 AATAAGTTATTCTTCACCCAAGGTAAT 57.009 29.630 2.10 0.00 37.56 1.89
2417 2486 9.457436 GAATAAGTTATTCTTCACCCAAGGTAA 57.543 33.333 22.93 0.00 41.00 2.85
2419 2488 7.939784 GAATAAGTTATTCTTCACCCAAGGT 57.060 36.000 22.93 0.00 41.00 3.50
2429 2498 7.184022 ACCCAGGGTGTAGAATAAGTTATTCTT 59.816 37.037 32.68 20.85 42.47 2.52
2430 2499 6.677076 ACCCAGGGTGTAGAATAAGTTATTCT 59.323 38.462 31.10 31.10 44.80 2.40
2431 2500 6.896883 ACCCAGGGTGTAGAATAAGTTATTC 58.103 40.000 22.80 22.80 38.76 1.75
2432 2501 6.903340 ACCCAGGGTGTAGAATAAGTTATT 57.097 37.500 11.70 7.87 32.98 1.40
2447 2516 0.693049 GACAGTTCATCACCCAGGGT 59.307 55.000 4.76 4.76 35.62 4.34
2448 2517 0.987294 AGACAGTTCATCACCCAGGG 59.013 55.000 2.85 2.85 0.00 4.45
2449 2518 1.947678 GCAGACAGTTCATCACCCAGG 60.948 57.143 0.00 0.00 0.00 4.45
2450 2519 1.271001 TGCAGACAGTTCATCACCCAG 60.271 52.381 0.00 0.00 0.00 4.45
2451 2520 0.764271 TGCAGACAGTTCATCACCCA 59.236 50.000 0.00 0.00 0.00 4.51
2452 2521 1.160137 GTGCAGACAGTTCATCACCC 58.840 55.000 0.00 0.00 0.00 4.61
2453 2522 2.175878 AGTGCAGACAGTTCATCACC 57.824 50.000 0.00 0.00 30.68 4.02
2454 2523 4.558538 AAAAGTGCAGACAGTTCATCAC 57.441 40.909 0.00 0.00 38.53 3.06
2455 2524 4.639755 TCAAAAAGTGCAGACAGTTCATCA 59.360 37.500 0.00 0.00 38.53 3.07
2456 2525 5.173774 TCAAAAAGTGCAGACAGTTCATC 57.826 39.130 0.00 0.00 38.53 2.92
2457 2526 5.126061 AGTTCAAAAAGTGCAGACAGTTCAT 59.874 36.000 0.00 0.00 38.53 2.57
2458 2527 4.458989 AGTTCAAAAAGTGCAGACAGTTCA 59.541 37.500 0.00 0.00 38.53 3.18
2459 2528 4.986622 AGTTCAAAAAGTGCAGACAGTTC 58.013 39.130 0.00 0.00 38.53 3.01
2460 2529 6.509418 TTAGTTCAAAAAGTGCAGACAGTT 57.491 33.333 0.00 0.00 41.32 3.16
2461 2530 6.509418 TTTAGTTCAAAAAGTGCAGACAGT 57.491 33.333 0.00 0.00 0.00 3.55
2462 2531 7.992180 ATTTTAGTTCAAAAAGTGCAGACAG 57.008 32.000 0.00 0.00 39.51 3.51
2463 2532 9.462174 CATATTTTAGTTCAAAAAGTGCAGACA 57.538 29.630 0.00 0.00 39.51 3.41
2464 2533 9.677567 TCATATTTTAGTTCAAAAAGTGCAGAC 57.322 29.630 0.00 0.00 39.51 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.