Multiple sequence alignment - TraesCS2B01G566700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G566700 chr2B 100.000 2507 0 0 1 2507 757927279 757924773 0.000000e+00 4630
1 TraesCS2B01G566700 chr2B 94.570 755 30 7 1759 2507 757899632 757898883 0.000000e+00 1157
2 TraesCS2B01G566700 chr2B 91.724 725 47 6 990 1714 757900332 757899621 0.000000e+00 994
3 TraesCS2B01G566700 chr2B 91.418 268 13 6 724 981 757900645 757900378 2.370000e-95 359
4 TraesCS2B01G566700 chr2B 91.892 74 4 2 640 713 757900754 757900683 4.410000e-18 102
5 TraesCS2B01G566700 chr2D 87.953 1021 67 20 724 1722 610864552 610863566 0.000000e+00 1153
6 TraesCS2B01G566700 chr2D 88.100 1000 71 20 724 1712 619339447 619338485 0.000000e+00 1144
7 TraesCS2B01G566700 chr2D 93.042 503 29 6 1753 2250 610863583 610863082 0.000000e+00 730
8 TraesCS2B01G566700 chr2D 88.930 542 36 5 1 530 314343102 314342573 0.000000e+00 647
9 TraesCS2B01G566700 chr2D 87.701 561 34 5 1 530 206634444 206633888 2.740000e-174 621
10 TraesCS2B01G566700 chr2D 91.892 74 4 2 640 713 619339556 619339485 4.410000e-18 102
11 TraesCS2B01G566700 chr4D 91.882 542 31 2 1 530 349001905 349002445 0.000000e+00 745
12 TraesCS2B01G566700 chr7B 91.525 531 43 2 1 530 58246337 58246866 0.000000e+00 730
13 TraesCS2B01G566700 chr7D 91.328 542 34 2 1 530 436473078 436473618 0.000000e+00 728
14 TraesCS2B01G566700 chr1D 91.144 542 36 1 1 530 7758844 7759385 0.000000e+00 725
15 TraesCS2B01G566700 chr3A 90.556 540 49 2 1 540 555647302 555647839 0.000000e+00 713
16 TraesCS2B01G566700 chr3A 91.331 496 42 1 1 496 555679898 555680392 0.000000e+00 676
17 TraesCS2B01G566700 chr4B 88.160 549 43 8 1 530 483516795 483517340 3.520000e-178 634
18 TraesCS2B01G566700 chr3D 87.879 561 36 4 1 530 30696816 30696257 4.550000e-177 630
19 TraesCS2B01G566700 chr5D 87.661 543 28 4 1 530 414015455 414015971 1.660000e-166 595
20 TraesCS2B01G566700 chrUn 86.627 501 50 4 47 530 153358593 153359093 2.840000e-149 538


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G566700 chr2B 757924773 757927279 2506 True 4630.0 4630 100.0000 1 2507 1 chr2B.!!$R1 2506
1 TraesCS2B01G566700 chr2B 757898883 757900754 1871 True 653.0 1157 92.4010 640 2507 4 chr2B.!!$R2 1867
2 TraesCS2B01G566700 chr2D 610863082 610864552 1470 True 941.5 1153 90.4975 724 2250 2 chr2D.!!$R3 1526
3 TraesCS2B01G566700 chr2D 314342573 314343102 529 True 647.0 647 88.9300 1 530 1 chr2D.!!$R2 529
4 TraesCS2B01G566700 chr2D 619338485 619339556 1071 True 623.0 1144 89.9960 640 1712 2 chr2D.!!$R4 1072
5 TraesCS2B01G566700 chr2D 206633888 206634444 556 True 621.0 621 87.7010 1 530 1 chr2D.!!$R1 529
6 TraesCS2B01G566700 chr4D 349001905 349002445 540 False 745.0 745 91.8820 1 530 1 chr4D.!!$F1 529
7 TraesCS2B01G566700 chr7B 58246337 58246866 529 False 730.0 730 91.5250 1 530 1 chr7B.!!$F1 529
8 TraesCS2B01G566700 chr7D 436473078 436473618 540 False 728.0 728 91.3280 1 530 1 chr7D.!!$F1 529
9 TraesCS2B01G566700 chr1D 7758844 7759385 541 False 725.0 725 91.1440 1 530 1 chr1D.!!$F1 529
10 TraesCS2B01G566700 chr3A 555647302 555647839 537 False 713.0 713 90.5560 1 540 1 chr3A.!!$F1 539
11 TraesCS2B01G566700 chr4B 483516795 483517340 545 False 634.0 634 88.1600 1 530 1 chr4B.!!$F1 529
12 TraesCS2B01G566700 chr3D 30696257 30696816 559 True 630.0 630 87.8790 1 530 1 chr3D.!!$R1 529
13 TraesCS2B01G566700 chr5D 414015455 414015971 516 False 595.0 595 87.6610 1 530 1 chr5D.!!$F1 529
14 TraesCS2B01G566700 chrUn 153358593 153359093 500 False 538.0 538 86.6270 47 530 1 chrUn.!!$F1 483

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 917 0.669318 GCGTCCACCAGTCGAATTCA 60.669 55.0 6.22 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2364 2511 1.225373 TCCAAAGGCCATAGCTCCAT 58.775 50.0 5.01 0.0 39.73 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.513158 CAGATGAACCTCGTCGGCT 59.487 57.895 0.00 0.00 37.48 5.52
149 162 2.365105 GTCTGGGGTCGGGATGGA 60.365 66.667 0.00 0.00 0.00 3.41
199 212 4.437587 GTCGGGAGGGGAGACGGA 62.438 72.222 0.00 0.00 0.00 4.69
285 335 3.072468 GGTCGGGGTCGTGATGGA 61.072 66.667 0.00 0.00 37.69 3.41
481 537 2.672961 TGCAGAGAAACGGTATCCTG 57.327 50.000 0.00 0.00 0.00 3.86
503 559 2.025155 TGTTTTTCGCAAACCTAGCCA 58.975 42.857 7.37 0.00 0.00 4.75
530 586 8.153550 TCAAAGTGGTGGTTTTATGCAATTTAT 58.846 29.630 0.00 0.00 0.00 1.40
532 588 8.916628 AAGTGGTGGTTTTATGCAATTTATTT 57.083 26.923 0.00 0.00 0.00 1.40
536 592 8.997323 TGGTGGTTTTATGCAATTTATTTCAAG 58.003 29.630 0.00 0.00 0.00 3.02
553 609 9.661563 TTATTTCAAGAATAACGTACATGAGGT 57.338 29.630 0.00 0.00 0.00 3.85
554 610 7.972832 TTTCAAGAATAACGTACATGAGGTT 57.027 32.000 0.00 4.24 39.44 3.50
555 611 7.972832 TTCAAGAATAACGTACATGAGGTTT 57.027 32.000 0.00 0.00 37.36 3.27
556 612 7.972832 TCAAGAATAACGTACATGAGGTTTT 57.027 32.000 0.00 0.00 37.36 2.43
557 613 8.385898 TCAAGAATAACGTACATGAGGTTTTT 57.614 30.769 0.00 3.36 37.36 1.94
558 614 8.500773 TCAAGAATAACGTACATGAGGTTTTTC 58.499 33.333 0.00 11.34 40.87 2.29
559 615 7.972832 AGAATAACGTACATGAGGTTTTTCA 57.027 32.000 20.97 5.69 41.96 2.69
560 616 8.561738 AGAATAACGTACATGAGGTTTTTCAT 57.438 30.769 20.97 12.21 41.96 2.57
561 617 8.665685 AGAATAACGTACATGAGGTTTTTCATC 58.334 33.333 20.97 10.63 41.96 2.92
562 618 5.622770 AACGTACATGAGGTTTTTCATCC 57.377 39.130 0.00 0.00 35.67 3.51
563 619 3.682858 ACGTACATGAGGTTTTTCATCCG 59.317 43.478 0.00 0.00 35.67 4.18
564 620 3.485216 CGTACATGAGGTTTTTCATCCGC 60.485 47.826 0.00 0.00 35.67 5.54
565 621 2.513753 ACATGAGGTTTTTCATCCGCA 58.486 42.857 0.00 0.00 35.67 5.69
566 622 2.890311 ACATGAGGTTTTTCATCCGCAA 59.110 40.909 0.00 0.00 37.12 4.85
567 623 3.320541 ACATGAGGTTTTTCATCCGCAAA 59.679 39.130 0.00 0.00 37.12 3.68
568 624 4.202202 ACATGAGGTTTTTCATCCGCAAAA 60.202 37.500 0.00 0.00 37.12 2.44
569 625 4.392921 TGAGGTTTTTCATCCGCAAAAA 57.607 36.364 0.00 0.00 31.20 1.94
570 626 4.954875 TGAGGTTTTTCATCCGCAAAAAT 58.045 34.783 0.00 0.00 35.67 1.82
571 627 6.090483 TGAGGTTTTTCATCCGCAAAAATA 57.910 33.333 0.00 0.00 35.67 1.40
572 628 6.516718 TGAGGTTTTTCATCCGCAAAAATAA 58.483 32.000 0.00 0.00 35.67 1.40
573 629 6.986817 TGAGGTTTTTCATCCGCAAAAATAAA 59.013 30.769 0.00 0.00 35.67 1.40
574 630 7.495934 TGAGGTTTTTCATCCGCAAAAATAAAA 59.504 29.630 0.00 0.00 35.67 1.52
575 631 8.214721 AGGTTTTTCATCCGCAAAAATAAAAA 57.785 26.923 0.00 0.00 35.67 1.94
609 665 9.736023 AAAATTGTAGCTGTAGTTTTTCTTCAG 57.264 29.630 0.00 0.00 42.11 3.02
610 666 8.451908 AATTGTAGCTGTAGTTTTTCTTCAGT 57.548 30.769 0.00 0.00 41.54 3.41
611 667 7.859325 TTGTAGCTGTAGTTTTTCTTCAGTT 57.141 32.000 0.00 0.00 41.54 3.16
612 668 8.951787 TTGTAGCTGTAGTTTTTCTTCAGTTA 57.048 30.769 0.00 0.00 41.54 2.24
613 669 8.589335 TGTAGCTGTAGTTTTTCTTCAGTTAG 57.411 34.615 0.00 0.00 41.54 2.34
614 670 6.546972 AGCTGTAGTTTTTCTTCAGTTAGC 57.453 37.500 0.00 0.00 41.54 3.09
615 671 6.292150 AGCTGTAGTTTTTCTTCAGTTAGCT 58.708 36.000 0.00 0.00 41.54 3.32
616 672 6.203723 AGCTGTAGTTTTTCTTCAGTTAGCTG 59.796 38.462 0.00 0.00 41.54 4.24
617 673 6.017852 GCTGTAGTTTTTCTTCAGTTAGCTGT 60.018 38.462 6.47 0.00 41.54 4.40
618 674 7.170998 GCTGTAGTTTTTCTTCAGTTAGCTGTA 59.829 37.037 6.47 0.00 41.54 2.74
619 675 8.361592 TGTAGTTTTTCTTCAGTTAGCTGTAC 57.638 34.615 6.47 0.00 43.05 2.90
620 676 6.862711 AGTTTTTCTTCAGTTAGCTGTACC 57.137 37.500 6.47 0.00 43.05 3.34
621 677 6.592870 AGTTTTTCTTCAGTTAGCTGTACCT 58.407 36.000 6.47 0.00 43.05 3.08
622 678 7.054751 AGTTTTTCTTCAGTTAGCTGTACCTT 58.945 34.615 6.47 0.00 43.05 3.50
623 679 7.556635 AGTTTTTCTTCAGTTAGCTGTACCTTT 59.443 33.333 6.47 0.00 43.05 3.11
624 680 7.875327 TTTTCTTCAGTTAGCTGTACCTTTT 57.125 32.000 6.47 0.00 43.05 2.27
625 681 7.492352 TTTCTTCAGTTAGCTGTACCTTTTC 57.508 36.000 6.47 0.00 43.05 2.29
626 682 6.420913 TCTTCAGTTAGCTGTACCTTTTCT 57.579 37.500 6.47 0.00 43.05 2.52
627 683 6.827727 TCTTCAGTTAGCTGTACCTTTTCTT 58.172 36.000 6.47 0.00 43.05 2.52
628 684 6.929606 TCTTCAGTTAGCTGTACCTTTTCTTC 59.070 38.462 6.47 0.00 43.05 2.87
629 685 6.169557 TCAGTTAGCTGTACCTTTTCTTCA 57.830 37.500 6.47 0.00 43.05 3.02
630 686 6.223852 TCAGTTAGCTGTACCTTTTCTTCAG 58.776 40.000 6.47 0.00 43.05 3.02
631 687 5.992217 CAGTTAGCTGTACCTTTTCTTCAGT 59.008 40.000 0.00 0.00 37.92 3.41
632 688 6.146347 CAGTTAGCTGTACCTTTTCTTCAGTC 59.854 42.308 0.00 0.00 37.92 3.51
633 689 4.689612 AGCTGTACCTTTTCTTCAGTCA 57.310 40.909 0.00 0.00 0.00 3.41
634 690 4.636249 AGCTGTACCTTTTCTTCAGTCAG 58.364 43.478 0.00 0.00 0.00 3.51
635 691 4.101741 AGCTGTACCTTTTCTTCAGTCAGT 59.898 41.667 0.00 0.00 0.00 3.41
636 692 4.816925 GCTGTACCTTTTCTTCAGTCAGTT 59.183 41.667 0.00 0.00 0.00 3.16
637 693 5.989777 GCTGTACCTTTTCTTCAGTCAGTTA 59.010 40.000 0.00 0.00 0.00 2.24
638 694 6.146347 GCTGTACCTTTTCTTCAGTCAGTTAG 59.854 42.308 0.00 0.00 0.00 2.34
647 703 5.918608 TCTTCAGTCAGTTAGAAGTGCTTT 58.081 37.500 0.00 0.00 39.69 3.51
699 755 1.679977 GGCTTTGGGCAGCAGATCA 60.680 57.895 0.00 0.00 42.10 2.92
712 772 1.473080 GCAGATCACCTTCTCCTGCTC 60.473 57.143 0.00 0.00 44.75 4.26
715 775 2.500910 AGATCACCTTCTCCTGCTCAAG 59.499 50.000 0.00 0.00 0.00 3.02
716 776 2.015456 TCACCTTCTCCTGCTCAAGA 57.985 50.000 0.00 0.00 0.00 3.02
718 778 3.713003 TCACCTTCTCCTGCTCAAGATA 58.287 45.455 0.00 0.00 0.00 1.98
720 780 4.343526 TCACCTTCTCCTGCTCAAGATATC 59.656 45.833 0.00 0.00 0.00 1.63
721 781 4.100653 CACCTTCTCCTGCTCAAGATATCA 59.899 45.833 5.32 0.00 0.00 2.15
722 782 4.906664 ACCTTCTCCTGCTCAAGATATCAT 59.093 41.667 5.32 0.00 0.00 2.45
743 827 1.066645 GGTAAGGTTCACCGGAATCGT 60.067 52.381 9.46 0.00 39.21 3.73
745 829 0.974383 AAGGTTCACCGGAATCGTCT 59.026 50.000 9.46 0.00 39.21 4.18
833 917 0.669318 GCGTCCACCAGTCGAATTCA 60.669 55.000 6.22 0.00 0.00 2.57
878 963 3.126729 GCAATCGCAACATTGGCTT 57.873 47.368 3.04 0.00 38.36 4.35
1014 1149 4.147449 CAGATGGAGCCCGTGCGA 62.147 66.667 0.00 0.00 44.33 5.10
1035 1170 2.431057 AGTGCGGACGAGAATTCCTATT 59.569 45.455 0.00 0.00 0.00 1.73
1047 1182 7.447853 ACGAGAATTCCTATTATCTACGAGGTT 59.552 37.037 0.65 0.00 31.33 3.50
1191 1326 0.250467 GGCCGCACATCTACCATGAT 60.250 55.000 0.00 0.00 0.00 2.45
1240 1375 3.645975 CGTTCTGGCCGCGTTTGT 61.646 61.111 4.92 0.00 0.00 2.83
1243 1378 0.385098 GTTCTGGCCGCGTTTGTTAC 60.385 55.000 4.92 0.00 0.00 2.50
1244 1379 0.814410 TTCTGGCCGCGTTTGTTACA 60.814 50.000 4.92 0.00 0.00 2.41
1245 1380 0.814410 TCTGGCCGCGTTTGTTACAA 60.814 50.000 4.92 0.00 0.00 2.41
1365 1500 1.372997 CGAGGTGGACGACAAGGTG 60.373 63.158 0.00 0.00 0.00 4.00
1523 1658 7.997482 AGTCCATGATTGATCATCTTTTTCAG 58.003 34.615 0.00 0.00 45.23 3.02
1524 1659 6.696148 GTCCATGATTGATCATCTTTTTCAGC 59.304 38.462 0.00 0.00 45.23 4.26
1531 1666 4.885907 TGATCATCTTTTTCAGCCTCCATC 59.114 41.667 0.00 0.00 0.00 3.51
1562 1697 0.764369 TGCTGGTGTCACTCTCCCTT 60.764 55.000 2.35 0.00 0.00 3.95
1563 1698 0.398318 GCTGGTGTCACTCTCCCTTT 59.602 55.000 2.35 0.00 0.00 3.11
1581 1716 1.321474 TTTTCAAGCCAGGCAGACAG 58.679 50.000 15.80 0.00 0.00 3.51
1598 1733 6.238593 GGCAGACAGGAAAATTTATCAGCTAG 60.239 42.308 0.00 0.00 0.00 3.42
1702 1837 2.433868 TCTAGAGCAACGTTGTGTCC 57.566 50.000 27.78 12.34 0.00 4.02
1703 1838 1.961394 TCTAGAGCAACGTTGTGTCCT 59.039 47.619 27.78 16.85 0.00 3.85
1704 1839 2.030185 TCTAGAGCAACGTTGTGTCCTC 60.030 50.000 27.78 23.27 0.00 3.71
1705 1840 0.753262 AGAGCAACGTTGTGTCCTCT 59.247 50.000 27.78 24.86 0.00 3.69
1706 1841 1.140816 GAGCAACGTTGTGTCCTCTC 58.859 55.000 27.78 19.76 0.00 3.20
1707 1842 0.753262 AGCAACGTTGTGTCCTCTCT 59.247 50.000 27.78 11.94 0.00 3.10
1708 1843 1.140816 GCAACGTTGTGTCCTCTCTC 58.859 55.000 27.78 4.91 0.00 3.20
1709 1844 1.269831 GCAACGTTGTGTCCTCTCTCT 60.270 52.381 27.78 0.00 0.00 3.10
1710 1845 2.667137 CAACGTTGTGTCCTCTCTCTC 58.333 52.381 20.21 0.00 0.00 3.20
1711 1846 2.279935 ACGTTGTGTCCTCTCTCTCT 57.720 50.000 0.00 0.00 0.00 3.10
1712 1847 2.156098 ACGTTGTGTCCTCTCTCTCTC 58.844 52.381 0.00 0.00 0.00 3.20
1713 1848 2.224670 ACGTTGTGTCCTCTCTCTCTCT 60.225 50.000 0.00 0.00 0.00 3.10
1714 1849 2.418628 CGTTGTGTCCTCTCTCTCTCTC 59.581 54.545 0.00 0.00 0.00 3.20
1715 1850 3.686016 GTTGTGTCCTCTCTCTCTCTCT 58.314 50.000 0.00 0.00 0.00 3.10
1716 1851 3.627395 TGTGTCCTCTCTCTCTCTCTC 57.373 52.381 0.00 0.00 0.00 3.20
1717 1852 3.181329 TGTGTCCTCTCTCTCTCTCTCT 58.819 50.000 0.00 0.00 0.00 3.10
1718 1853 3.197766 TGTGTCCTCTCTCTCTCTCTCTC 59.802 52.174 0.00 0.00 0.00 3.20
1719 1854 3.452627 GTGTCCTCTCTCTCTCTCTCTCT 59.547 52.174 0.00 0.00 0.00 3.10
1720 1855 3.706594 TGTCCTCTCTCTCTCTCTCTCTC 59.293 52.174 0.00 0.00 0.00 3.20
1721 1856 3.964031 GTCCTCTCTCTCTCTCTCTCTCT 59.036 52.174 0.00 0.00 0.00 3.10
1722 1857 4.038642 GTCCTCTCTCTCTCTCTCTCTCTC 59.961 54.167 0.00 0.00 0.00 3.20
1723 1858 4.078922 TCCTCTCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
1724 1859 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
1725 1860 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
1726 1861 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1727 1862 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1728 1863 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1729 1864 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1730 1865 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1731 1866 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1732 1867 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1733 1868 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1734 1869 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1735 1870 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1736 1871 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1737 1872 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1738 1873 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1739 1874 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1740 1875 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1741 1876 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1742 1877 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1743 1878 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1744 1879 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1745 1880 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1746 1881 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1747 1882 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1748 1883 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1749 1884 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1750 1885 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1751 1886 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1752 1887 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1753 1888 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1754 1889 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1755 1890 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1756 1891 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1757 1892 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1811 1954 7.639113 AACTAGTTATGTCTCCAGAGAAGAG 57.361 40.000 6.26 0.00 39.48 2.85
1827 1970 7.281100 CCAGAGAAGAGTGTTTAACTTGAACTT 59.719 37.037 0.00 0.00 40.07 2.66
1872 2015 1.278127 CCGGTGTTACCCAGATCAGTT 59.722 52.381 0.00 0.00 33.75 3.16
1873 2016 2.346803 CGGTGTTACCCAGATCAGTTG 58.653 52.381 0.00 0.00 33.75 3.16
1888 2031 0.322975 AGTTGATCACTGGCGCTCTT 59.677 50.000 7.64 0.00 32.83 2.85
1889 2032 1.550524 AGTTGATCACTGGCGCTCTTA 59.449 47.619 7.64 0.00 32.83 2.10
1890 2033 2.028112 AGTTGATCACTGGCGCTCTTAA 60.028 45.455 7.64 0.00 32.83 1.85
1935 2078 4.938226 CCCTTTTCTGTGACTGTATTCCTC 59.062 45.833 0.00 0.00 0.00 3.71
1984 2127 6.073003 GCTTTAGTTGTCACTAGCAAGAATGT 60.073 38.462 0.00 0.00 36.81 2.71
1996 2139 5.051891 AGCAAGAATGTACATTTGTCAGC 57.948 39.130 21.63 18.98 0.00 4.26
2001 2144 6.500684 AGAATGTACATTTGTCAGCGATTT 57.499 33.333 21.63 0.00 0.00 2.17
2018 2161 6.033196 CAGCGATTTAACTCTCAAGCAAAATG 59.967 38.462 0.00 0.00 0.00 2.32
2021 2164 5.528043 TTTAACTCTCAAGCAAAATGCCA 57.472 34.783 0.00 0.00 46.52 4.92
2036 2180 2.198827 TGCCATTGACAGGGTACTTG 57.801 50.000 0.00 0.00 0.00 3.16
2041 2185 2.943036 TTGACAGGGTACTTGTTCCC 57.057 50.000 7.29 7.29 43.71 3.97
2054 2199 5.941948 ACTTGTTCCCGAGAAAAATACAG 57.058 39.130 0.00 0.00 32.58 2.74
2059 2204 6.761312 TGTTCCCGAGAAAAATACAGACTTA 58.239 36.000 0.00 0.00 32.58 2.24
2124 2270 2.042979 AGGTTCAACCATGCCCTTACAT 59.957 45.455 9.90 0.00 41.95 2.29
2156 2302 4.987912 CCAAACAATAACCATGGTGTTCAC 59.012 41.667 20.60 0.00 33.18 3.18
2283 2430 5.417811 GCCTTACAAAGAAGTACCTCCTAC 58.582 45.833 0.00 0.00 0.00 3.18
2286 2433 6.210984 CCTTACAAAGAAGTACCTCCTACACT 59.789 42.308 0.00 0.00 0.00 3.55
2317 2464 8.610896 CAAATTTGTTTCCAGTTAATGCAAGAA 58.389 29.630 10.15 0.00 0.00 2.52
2364 2511 5.786311 CAAGGATTGCCTGAATGAAAGAAA 58.214 37.500 0.00 0.00 46.28 2.52
2400 2550 1.699083 TGGAAGAAGTGCATCTGGACA 59.301 47.619 4.63 0.00 38.96 4.02
2413 2563 0.462937 CTGGACAACCACCACACGAA 60.463 55.000 0.00 0.00 41.77 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 134 3.374402 CCCAGACGAGGCAGACGT 61.374 66.667 0.00 0.00 46.58 4.34
123 136 2.997897 ACCCCAGACGAGGCAGAC 60.998 66.667 0.00 0.00 0.00 3.51
223 236 1.052124 ACCACCTGTTCCAACCTCGA 61.052 55.000 0.00 0.00 0.00 4.04
279 329 2.198827 AATTTGTCGCAGGTCCATCA 57.801 45.000 0.00 0.00 0.00 3.07
285 335 2.820330 CCAAACAAATTTGTCGCAGGT 58.180 42.857 23.47 4.72 43.23 4.00
473 529 2.156098 TGCGAAAAACACCAGGATACC 58.844 47.619 0.00 0.00 37.17 2.73
481 537 2.390938 GCTAGGTTTGCGAAAAACACC 58.609 47.619 6.70 0.00 32.04 4.16
503 559 5.543507 TTGCATAAAACCACCACTTTGAT 57.456 34.783 0.00 0.00 0.00 2.57
530 586 7.972832 AACCTCATGTACGTTATTCTTGAAA 57.027 32.000 0.00 0.00 0.00 2.69
532 588 7.972832 AAAACCTCATGTACGTTATTCTTGA 57.027 32.000 0.00 0.00 0.00 3.02
536 592 7.908601 GGATGAAAAACCTCATGTACGTTATTC 59.091 37.037 0.00 0.00 36.15 1.75
538 594 6.036735 CGGATGAAAAACCTCATGTACGTTAT 59.963 38.462 0.00 0.00 36.15 1.89
539 595 5.349270 CGGATGAAAAACCTCATGTACGTTA 59.651 40.000 0.00 0.00 36.15 3.18
540 596 4.153475 CGGATGAAAAACCTCATGTACGTT 59.847 41.667 0.00 0.00 36.15 3.99
541 597 3.682858 CGGATGAAAAACCTCATGTACGT 59.317 43.478 0.00 0.00 36.15 3.57
542 598 3.485216 GCGGATGAAAAACCTCATGTACG 60.485 47.826 0.00 0.00 36.15 3.67
543 599 3.438781 TGCGGATGAAAAACCTCATGTAC 59.561 43.478 0.00 0.00 36.15 2.90
544 600 3.680490 TGCGGATGAAAAACCTCATGTA 58.320 40.909 0.00 0.00 36.15 2.29
545 601 2.513753 TGCGGATGAAAAACCTCATGT 58.486 42.857 0.00 0.00 36.15 3.21
546 602 3.574284 TTGCGGATGAAAAACCTCATG 57.426 42.857 0.00 0.00 36.15 3.07
547 603 4.599047 TTTTGCGGATGAAAAACCTCAT 57.401 36.364 0.00 0.00 38.79 2.90
548 604 4.392921 TTTTTGCGGATGAAAAACCTCA 57.607 36.364 0.00 0.00 32.20 3.86
549 605 7.414814 TTTATTTTTGCGGATGAAAAACCTC 57.585 32.000 0.00 0.00 35.64 3.85
550 606 7.793927 TTTTATTTTTGCGGATGAAAAACCT 57.206 28.000 0.00 0.00 35.64 3.50
583 639 9.736023 CTGAAGAAAAACTACAGCTACAATTTT 57.264 29.630 0.00 0.00 0.00 1.82
584 640 8.903820 ACTGAAGAAAAACTACAGCTACAATTT 58.096 29.630 0.00 0.00 32.67 1.82
585 641 8.451908 ACTGAAGAAAAACTACAGCTACAATT 57.548 30.769 0.00 0.00 32.67 2.32
586 642 8.451908 AACTGAAGAAAAACTACAGCTACAAT 57.548 30.769 0.00 0.00 32.67 2.71
587 643 7.859325 AACTGAAGAAAAACTACAGCTACAA 57.141 32.000 0.00 0.00 32.67 2.41
588 644 7.170998 GCTAACTGAAGAAAAACTACAGCTACA 59.829 37.037 0.00 0.00 32.67 2.74
589 645 7.385478 AGCTAACTGAAGAAAAACTACAGCTAC 59.615 37.037 0.00 0.00 33.01 3.58
590 646 7.442656 AGCTAACTGAAGAAAAACTACAGCTA 58.557 34.615 0.00 0.00 33.01 3.32
591 647 6.292150 AGCTAACTGAAGAAAAACTACAGCT 58.708 36.000 0.00 0.00 32.67 4.24
592 648 6.546972 AGCTAACTGAAGAAAAACTACAGC 57.453 37.500 0.00 0.00 32.67 4.40
608 664 6.176014 ACTGAAGAAAAGGTACAGCTAACT 57.824 37.500 0.00 0.00 32.67 2.24
609 665 5.989777 TGACTGAAGAAAAGGTACAGCTAAC 59.010 40.000 0.00 0.00 32.67 2.34
610 666 6.169557 TGACTGAAGAAAAGGTACAGCTAA 57.830 37.500 0.00 0.00 32.67 3.09
611 667 5.304614 ACTGACTGAAGAAAAGGTACAGCTA 59.695 40.000 0.00 0.00 32.67 3.32
612 668 4.101741 ACTGACTGAAGAAAAGGTACAGCT 59.898 41.667 0.00 0.00 32.67 4.24
613 669 4.381411 ACTGACTGAAGAAAAGGTACAGC 58.619 43.478 0.00 0.00 32.67 4.40
614 670 7.434492 TCTAACTGACTGAAGAAAAGGTACAG 58.566 38.462 0.00 0.00 35.14 2.74
615 671 7.356089 TCTAACTGACTGAAGAAAAGGTACA 57.644 36.000 0.00 0.00 0.00 2.90
616 672 7.927092 ACTTCTAACTGACTGAAGAAAAGGTAC 59.073 37.037 8.65 0.00 39.42 3.34
617 673 7.926555 CACTTCTAACTGACTGAAGAAAAGGTA 59.073 37.037 8.65 0.00 39.42 3.08
618 674 6.763610 CACTTCTAACTGACTGAAGAAAAGGT 59.236 38.462 8.65 0.00 39.42 3.50
619 675 6.293135 GCACTTCTAACTGACTGAAGAAAAGG 60.293 42.308 8.65 0.00 39.42 3.11
620 676 6.481644 AGCACTTCTAACTGACTGAAGAAAAG 59.518 38.462 8.65 0.00 39.42 2.27
621 677 6.349300 AGCACTTCTAACTGACTGAAGAAAA 58.651 36.000 8.65 0.00 39.42 2.29
622 678 5.918608 AGCACTTCTAACTGACTGAAGAAA 58.081 37.500 8.65 0.00 39.42 2.52
623 679 5.537300 AGCACTTCTAACTGACTGAAGAA 57.463 39.130 8.65 0.00 39.42 2.52
624 680 5.537300 AAGCACTTCTAACTGACTGAAGA 57.463 39.130 8.65 0.00 39.42 2.87
625 681 5.178438 GGAAAGCACTTCTAACTGACTGAAG 59.822 44.000 0.00 0.00 41.87 3.02
626 682 5.057149 GGAAAGCACTTCTAACTGACTGAA 58.943 41.667 0.00 0.00 34.17 3.02
627 683 4.100963 TGGAAAGCACTTCTAACTGACTGA 59.899 41.667 0.00 0.00 34.17 3.41
628 684 4.380531 TGGAAAGCACTTCTAACTGACTG 58.619 43.478 0.00 0.00 34.17 3.51
629 685 4.689612 TGGAAAGCACTTCTAACTGACT 57.310 40.909 0.00 0.00 34.17 3.41
630 686 5.751243 TTTGGAAAGCACTTCTAACTGAC 57.249 39.130 0.00 0.00 34.53 3.51
631 687 6.959639 ATTTTGGAAAGCACTTCTAACTGA 57.040 33.333 0.00 0.00 34.53 3.41
632 688 9.696917 ATTTATTTTGGAAAGCACTTCTAACTG 57.303 29.630 0.00 0.00 34.53 3.16
663 719 1.231068 CTGGGAATGGGATGGTGGG 59.769 63.158 0.00 0.00 0.00 4.61
699 755 4.293494 TGATATCTTGAGCAGGAGAAGGT 58.707 43.478 3.98 0.00 0.00 3.50
712 772 5.466728 CGGTGAACCTTACCATGATATCTTG 59.533 44.000 10.87 10.87 38.11 3.02
715 775 4.039973 TCCGGTGAACCTTACCATGATATC 59.960 45.833 0.00 0.00 38.11 1.63
716 776 3.971305 TCCGGTGAACCTTACCATGATAT 59.029 43.478 0.00 0.00 38.11 1.63
718 778 2.193127 TCCGGTGAACCTTACCATGAT 58.807 47.619 0.00 0.00 38.11 2.45
720 780 2.483014 TTCCGGTGAACCTTACCATG 57.517 50.000 0.00 0.00 38.11 3.66
721 781 2.419574 CGATTCCGGTGAACCTTACCAT 60.420 50.000 0.00 0.00 38.11 3.55
722 782 1.066716 CGATTCCGGTGAACCTTACCA 60.067 52.381 0.00 0.00 38.11 3.25
805 889 1.897398 CTGGTGGACGCGTTGCTTAC 61.897 60.000 15.53 8.41 0.00 2.34
809 893 3.712881 GACTGGTGGACGCGTTGC 61.713 66.667 15.53 6.65 0.00 4.17
811 895 2.430382 ATTCGACTGGTGGACGCGTT 62.430 55.000 15.53 0.00 0.00 4.84
833 917 1.889829 GATCGGACGAGATGGGATTCT 59.110 52.381 0.00 0.00 0.00 2.40
878 963 7.095229 CGAAGCAAAGGCAAACTATATATAGCA 60.095 37.037 18.00 0.00 44.61 3.49
973 1070 3.360886 GCAGCAGGCTAAGAGAGAC 57.639 57.895 0.00 0.00 40.25 3.36
1012 1147 1.140407 GGAATTCTCGTCCGCACTCG 61.140 60.000 5.23 0.00 0.00 4.18
1014 1149 1.471119 TAGGAATTCTCGTCCGCACT 58.529 50.000 5.23 0.00 40.36 4.40
1175 1310 3.656559 TCATCATCATGGTAGATGTGCG 58.343 45.455 16.84 0.00 44.46 5.34
1191 1326 1.862242 TCCTCCTCCTCCTCATCATCA 59.138 52.381 0.00 0.00 0.00 3.07
1234 1369 0.236449 GAGGCCGGTTGTAACAAACG 59.764 55.000 1.90 3.95 0.00 3.60
1365 1500 2.126618 TCACACGGCATCGTCGTC 60.127 61.111 0.00 0.00 40.97 4.20
1523 1658 3.366781 GCAGAAAAAGTCTTGATGGAGGC 60.367 47.826 0.00 0.00 32.70 4.70
1524 1659 4.077822 AGCAGAAAAAGTCTTGATGGAGG 58.922 43.478 0.00 0.00 32.70 4.30
1531 1666 3.378112 TGACACCAGCAGAAAAAGTCTTG 59.622 43.478 0.00 0.00 32.70 3.02
1562 1697 1.321474 CTGTCTGCCTGGCTTGAAAA 58.679 50.000 21.03 8.94 0.00 2.29
1563 1698 0.538057 CCTGTCTGCCTGGCTTGAAA 60.538 55.000 21.03 11.95 0.00 2.69
1581 1716 7.051000 AGGACTGACTAGCTGATAAATTTTCC 58.949 38.462 0.00 0.00 0.00 3.13
1598 1733 6.282199 TCTAGGTTTACATTGAGGACTGAC 57.718 41.667 0.00 0.00 0.00 3.51
1700 1835 4.078922 AGAGAGAGAGAGAGAGAGAGAGGA 60.079 50.000 0.00 0.00 0.00 3.71
1702 1837 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1703 1838 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1704 1839 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1705 1840 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1706 1841 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1707 1842 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1708 1843 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1709 1844 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1710 1845 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1711 1846 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1712 1847 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1713 1848 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1714 1849 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1715 1850 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1716 1851 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1717 1852 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1718 1853 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1719 1854 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1720 1855 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1721 1856 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1722 1857 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1723 1858 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1724 1859 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1725 1860 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1726 1861 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1727 1862 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1728 1863 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1729 1864 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1730 1865 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1731 1866 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1732 1867 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1733 1868 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1734 1869 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1735 1870 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1736 1871 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1737 1872 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1738 1873 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1739 1874 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1740 1875 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1741 1876 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1742 1877 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1743 1878 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1744 1879 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1745 1880 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1746 1881 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
1747 1882 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
1748 1883 4.648762 ACAGAGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
1749 1884 4.614475 ACAGAGAGAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
1750 1885 5.350504 AACAGAGAGAGAGAGAGAGAGAG 57.649 47.826 0.00 0.00 0.00 3.20
1751 1886 5.762179 AAACAGAGAGAGAGAGAGAGAGA 57.238 43.478 0.00 0.00 0.00 3.10
1752 1887 6.656693 AGAAAAACAGAGAGAGAGAGAGAGAG 59.343 42.308 0.00 0.00 0.00 3.20
1753 1888 6.542821 AGAAAAACAGAGAGAGAGAGAGAGA 58.457 40.000 0.00 0.00 0.00 3.10
1754 1889 6.824305 AGAAAAACAGAGAGAGAGAGAGAG 57.176 41.667 0.00 0.00 0.00 3.20
1755 1890 7.286546 TCAAAGAAAAACAGAGAGAGAGAGAGA 59.713 37.037 0.00 0.00 0.00 3.10
1756 1891 7.432869 TCAAAGAAAAACAGAGAGAGAGAGAG 58.567 38.462 0.00 0.00 0.00 3.20
1757 1892 7.353414 TCAAAGAAAAACAGAGAGAGAGAGA 57.647 36.000 0.00 0.00 0.00 3.10
1811 1954 4.739195 TGGCACAAGTTCAAGTTAAACAC 58.261 39.130 0.00 0.00 31.92 3.32
1872 2015 2.093500 ACATTAAGAGCGCCAGTGATCA 60.093 45.455 2.29 0.00 0.00 2.92
1873 2016 2.541762 GACATTAAGAGCGCCAGTGATC 59.458 50.000 2.29 0.00 0.00 2.92
1888 2031 7.038302 GGGACCCTAATATCATCAGTGACATTA 60.038 40.741 2.09 0.00 33.69 1.90
1889 2032 6.240002 GGGACCCTAATATCATCAGTGACATT 60.240 42.308 2.09 0.00 35.70 2.71
1890 2033 5.249393 GGGACCCTAATATCATCAGTGACAT 59.751 44.000 2.09 0.00 37.14 3.06
1935 2078 2.649331 ACTCGTATTCCTCAACACCG 57.351 50.000 0.00 0.00 0.00 4.94
1947 2090 7.817962 AGTGACAACTAAAGCAAATACTCGTAT 59.182 33.333 0.00 0.00 33.79 3.06
1950 2093 6.467723 AGTGACAACTAAAGCAAATACTCG 57.532 37.500 0.00 0.00 33.79 4.18
1984 2127 6.871492 TGAGAGTTAAATCGCTGACAAATGTA 59.129 34.615 8.10 0.00 0.00 2.29
1996 2139 5.287035 GGCATTTTGCTTGAGAGTTAAATCG 59.713 40.000 0.00 0.00 44.28 3.34
2001 2144 5.243507 TCAATGGCATTTTGCTTGAGAGTTA 59.756 36.000 10.65 0.00 44.28 2.24
2018 2161 2.200373 ACAAGTACCCTGTCAATGGC 57.800 50.000 0.00 0.00 0.00 4.40
2021 2164 2.290071 CGGGAACAAGTACCCTGTCAAT 60.290 50.000 0.00 0.00 43.57 2.57
2036 2180 7.845066 ATAAGTCTGTATTTTTCTCGGGAAC 57.155 36.000 0.00 0.00 0.00 3.62
2124 2270 7.070571 ACCATGGTTATTGTTTGGAGAGAAAAA 59.929 33.333 13.00 0.00 0.00 1.94
2156 2302 3.942829 ACCACAATACACCATCAGAGTG 58.057 45.455 0.00 0.00 41.15 3.51
2283 2430 6.391227 ACTGGAAACAAATTTGTCCTAGTG 57.609 37.500 26.61 17.88 41.31 2.74
2286 2433 7.870445 GCATTAACTGGAAACAAATTTGTCCTA 59.130 33.333 23.47 14.82 41.31 2.94
2317 2464 8.644374 TGTAAAGCCATAGTTTCACCTATTTT 57.356 30.769 0.00 0.00 0.00 1.82
2364 2511 1.225373 TCCAAAGGCCATAGCTCCAT 58.775 50.000 5.01 0.00 39.73 3.41
2421 2571 5.531122 TTATCTGGTATGGAACTCCGAAG 57.469 43.478 0.00 0.00 39.43 3.79
2422 2572 6.494666 AATTATCTGGTATGGAACTCCGAA 57.505 37.500 0.00 0.00 39.43 4.30
2424 2574 6.874134 CCTTAATTATCTGGTATGGAACTCCG 59.126 42.308 0.00 0.00 39.43 4.63
2425 2575 7.746703 ACCTTAATTATCTGGTATGGAACTCC 58.253 38.462 4.21 0.00 0.00 3.85
2470 2621 8.753133 TGTCTTTCATTCTCTATGTCTGTATGT 58.247 33.333 0.00 0.00 35.64 2.29
2471 2622 9.591792 TTGTCTTTCATTCTCTATGTCTGTATG 57.408 33.333 0.00 0.00 35.64 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.