Multiple sequence alignment - TraesCS2B01G566600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G566600 chr2B 100.000 2704 0 0 1 2704 757901456 757898753 0.000000e+00 4994.0
1 TraesCS2B01G566600 chr2B 94.038 889 36 10 1825 2704 757925521 757924641 0.000000e+00 1332.0
2 TraesCS2B01G566600 chr2B 91.724 725 47 6 1125 1836 757926290 757925566 0.000000e+00 994.0
3 TraesCS2B01G566600 chr2B 91.418 268 13 6 812 1079 757926556 757926299 2.560000e-95 359.0
4 TraesCS2B01G566600 chr2B 90.452 199 18 1 298 496 547875090 547874893 7.430000e-66 261.0
5 TraesCS2B01G566600 chr2B 91.892 74 4 2 703 774 757926640 757926567 4.760000e-18 102.0
6 TraesCS2B01G566600 chr2D 90.716 1551 69 36 787 2317 610864577 610863082 0.000000e+00 1997.0
7 TraesCS2B01G566600 chr2D 90.957 763 45 12 1097 1858 619339202 619338463 0.000000e+00 1005.0
8 TraesCS2B01G566600 chr2D 92.795 458 18 8 625 1081 619339633 619339190 0.000000e+00 649.0
9 TraesCS2B01G566600 chr2D 81.818 275 27 9 1953 2207 619338465 619338194 2.730000e-50 209.0
10 TraesCS2B01G566600 chr2D 90.816 98 9 0 641 738 610866335 610866238 6.070000e-27 132.0
11 TraesCS2B01G566600 chr4B 89.500 200 18 3 298 496 518100392 518100589 1.610000e-62 250.0
12 TraesCS2B01G566600 chr4B 78.808 151 25 7 356 504 106821792 106821937 7.970000e-16 95.3
13 TraesCS2B01G566600 chr4A 77.725 211 31 13 298 500 624367561 624367763 6.120000e-22 115.0
14 TraesCS2B01G566600 chr4A 89.831 59 4 2 228 284 339986275 339986217 1.040000e-09 75.0
15 TraesCS2B01G566600 chr7A 91.525 59 3 2 228 284 410597824 410597766 2.230000e-11 80.5
16 TraesCS2B01G566600 chr7A 89.831 59 4 2 228 284 410552021 410551963 1.040000e-09 75.0
17 TraesCS2B01G566600 chr4D 92.727 55 4 0 230 284 188695692 188695638 2.230000e-11 80.5
18 TraesCS2B01G566600 chr1D 90.476 63 3 3 228 287 182632400 182632462 2.230000e-11 80.5
19 TraesCS2B01G566600 chr1D 92.453 53 4 0 232 284 143443784 143443836 2.890000e-10 76.8
20 TraesCS2B01G566600 chr6D 92.453 53 4 0 232 284 265982129 265982181 2.890000e-10 76.8
21 TraesCS2B01G566600 chr6D 94.000 50 3 0 235 284 295186155 295186106 2.890000e-10 76.8
22 TraesCS2B01G566600 chr3D 92.453 53 4 0 232 284 223506863 223506915 2.890000e-10 76.8
23 TraesCS2B01G566600 chr3D 95.000 40 1 1 465 504 136569738 136569700 8.080000e-06 62.1
24 TraesCS2B01G566600 chr1B 93.023 43 2 1 465 507 278694009 278693968 8.080000e-06 62.1
25 TraesCS2B01G566600 chr3B 94.872 39 1 1 465 503 748976903 748976866 2.910000e-05 60.2
26 TraesCS2B01G566600 chr7B 97.059 34 1 0 465 498 597315101 597315068 1.050000e-04 58.4
27 TraesCS2B01G566600 chr5A 100.000 31 0 0 6 36 688509578 688509548 1.050000e-04 58.4
28 TraesCS2B01G566600 chr5A 86.792 53 5 2 447 498 702498539 702498488 1.050000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G566600 chr2B 757898753 757901456 2703 True 4994.00 4994 100.000000 1 2704 1 chr2B.!!$R2 2703
1 TraesCS2B01G566600 chr2B 757924641 757926640 1999 True 696.75 1332 92.268000 703 2704 4 chr2B.!!$R3 2001
2 TraesCS2B01G566600 chr2D 610863082 610866335 3253 True 1064.50 1997 90.766000 641 2317 2 chr2D.!!$R1 1676
3 TraesCS2B01G566600 chr2D 619338194 619339633 1439 True 621.00 1005 88.523333 625 2207 3 chr2D.!!$R2 1582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.031314 TTCGCGGCAATCAAAGCAAA 59.969 45.0 6.13 0.0 0.0 3.68 F
627 628 0.034477 ATCCCGGCCGTGAGATTTTT 60.034 50.0 26.12 0.0 0.0 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1219 2841 0.827089 TCCCGTACACCTCGTTCCAA 60.827 55.0 0.00 0.0 0.00 3.53 R
2434 4150 0.255890 TCCAAAGGCCATAGCTCCAC 59.744 55.0 5.01 0.0 39.73 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.215245 GATCTGCCCTCTCGTGCT 58.785 61.111 0.00 0.00 0.00 4.40
18 19 1.519719 GATCTGCCCTCTCGTGCTT 59.480 57.895 0.00 0.00 0.00 3.91
19 20 0.107945 GATCTGCCCTCTCGTGCTTT 60.108 55.000 0.00 0.00 0.00 3.51
20 21 0.326264 ATCTGCCCTCTCGTGCTTTT 59.674 50.000 0.00 0.00 0.00 2.27
21 22 0.973632 TCTGCCCTCTCGTGCTTTTA 59.026 50.000 0.00 0.00 0.00 1.52
22 23 1.555075 TCTGCCCTCTCGTGCTTTTAT 59.445 47.619 0.00 0.00 0.00 1.40
23 24 2.764010 TCTGCCCTCTCGTGCTTTTATA 59.236 45.455 0.00 0.00 0.00 0.98
24 25 3.196901 TCTGCCCTCTCGTGCTTTTATAA 59.803 43.478 0.00 0.00 0.00 0.98
25 26 4.130118 CTGCCCTCTCGTGCTTTTATAAT 58.870 43.478 0.00 0.00 0.00 1.28
26 27 3.876914 TGCCCTCTCGTGCTTTTATAATG 59.123 43.478 0.00 0.00 0.00 1.90
27 28 4.127171 GCCCTCTCGTGCTTTTATAATGA 58.873 43.478 0.00 0.00 0.00 2.57
28 29 4.757149 GCCCTCTCGTGCTTTTATAATGAT 59.243 41.667 0.00 0.00 0.00 2.45
29 30 5.932303 GCCCTCTCGTGCTTTTATAATGATA 59.068 40.000 0.00 0.00 0.00 2.15
30 31 6.091441 GCCCTCTCGTGCTTTTATAATGATAG 59.909 42.308 0.00 0.00 0.00 2.08
31 32 7.155328 CCCTCTCGTGCTTTTATAATGATAGT 58.845 38.462 0.00 0.00 0.00 2.12
32 33 8.304596 CCCTCTCGTGCTTTTATAATGATAGTA 58.695 37.037 0.00 0.00 0.00 1.82
33 34 9.347934 CCTCTCGTGCTTTTATAATGATAGTAG 57.652 37.037 0.00 0.00 0.00 2.57
46 47 5.888691 ATGATAGTAGATACTGCTCACGG 57.111 43.478 2.72 0.00 37.10 4.94
47 48 4.072839 TGATAGTAGATACTGCTCACGGG 58.927 47.826 2.72 0.00 37.10 5.28
48 49 2.730934 AGTAGATACTGCTCACGGGA 57.269 50.000 0.00 0.00 34.72 5.14
49 50 2.299521 AGTAGATACTGCTCACGGGAC 58.700 52.381 0.00 0.00 34.72 4.46
50 51 2.022195 GTAGATACTGCTCACGGGACA 58.978 52.381 0.00 0.00 0.00 4.02
51 52 1.781786 AGATACTGCTCACGGGACAT 58.218 50.000 0.00 0.00 0.00 3.06
52 53 1.410517 AGATACTGCTCACGGGACATG 59.589 52.381 0.00 0.00 0.00 3.21
53 54 1.409064 GATACTGCTCACGGGACATGA 59.591 52.381 0.00 0.00 0.00 3.07
54 55 0.530744 TACTGCTCACGGGACATGAC 59.469 55.000 0.00 0.00 0.00 3.06
55 56 1.448540 CTGCTCACGGGACATGACC 60.449 63.158 5.56 5.56 0.00 4.02
56 57 2.171209 CTGCTCACGGGACATGACCA 62.171 60.000 16.14 0.00 0.00 4.02
57 58 1.003839 GCTCACGGGACATGACCAA 60.004 57.895 16.14 0.00 0.00 3.67
58 59 1.298859 GCTCACGGGACATGACCAAC 61.299 60.000 16.14 0.00 0.00 3.77
59 60 0.034756 CTCACGGGACATGACCAACA 59.965 55.000 16.14 0.00 0.00 3.33
60 61 0.690192 TCACGGGACATGACCAACAT 59.310 50.000 16.14 0.00 40.17 2.71
61 62 1.903183 TCACGGGACATGACCAACATA 59.097 47.619 16.14 0.00 37.46 2.29
62 63 2.303311 TCACGGGACATGACCAACATAA 59.697 45.455 16.14 0.00 37.46 1.90
63 64 3.078097 CACGGGACATGACCAACATAAA 58.922 45.455 16.14 0.00 37.46 1.40
64 65 3.504134 CACGGGACATGACCAACATAAAA 59.496 43.478 16.14 0.00 37.46 1.52
65 66 3.756434 ACGGGACATGACCAACATAAAAG 59.244 43.478 16.14 0.00 37.46 2.27
66 67 3.128589 CGGGACATGACCAACATAAAAGG 59.871 47.826 16.14 0.00 37.46 3.11
67 68 4.340617 GGGACATGACCAACATAAAAGGA 58.659 43.478 16.14 0.00 37.46 3.36
68 69 4.399303 GGGACATGACCAACATAAAAGGAG 59.601 45.833 16.14 0.00 37.46 3.69
69 70 4.399303 GGACATGACCAACATAAAAGGAGG 59.601 45.833 9.48 0.00 37.46 4.30
70 71 5.253330 GACATGACCAACATAAAAGGAGGA 58.747 41.667 0.00 0.00 37.46 3.71
71 72 5.256474 ACATGACCAACATAAAAGGAGGAG 58.744 41.667 0.00 0.00 37.46 3.69
72 73 4.301072 TGACCAACATAAAAGGAGGAGG 57.699 45.455 0.00 0.00 0.00 4.30
73 74 3.655777 TGACCAACATAAAAGGAGGAGGT 59.344 43.478 0.00 0.00 0.00 3.85
74 75 4.105697 TGACCAACATAAAAGGAGGAGGTT 59.894 41.667 0.00 0.00 0.00 3.50
75 76 5.074746 ACCAACATAAAAGGAGGAGGTTT 57.925 39.130 0.00 0.00 0.00 3.27
76 77 5.077564 ACCAACATAAAAGGAGGAGGTTTC 58.922 41.667 0.00 0.00 0.00 2.78
77 78 4.462834 CCAACATAAAAGGAGGAGGTTTCC 59.537 45.833 0.00 0.00 44.39 3.13
78 79 5.076873 CAACATAAAAGGAGGAGGTTTCCA 58.923 41.667 0.00 0.00 46.64 3.53
79 80 5.536497 ACATAAAAGGAGGAGGTTTCCAT 57.464 39.130 0.00 0.00 46.64 3.41
80 81 5.903923 ACATAAAAGGAGGAGGTTTCCATT 58.096 37.500 0.00 0.00 46.64 3.16
81 82 5.716703 ACATAAAAGGAGGAGGTTTCCATTG 59.283 40.000 0.00 0.00 46.64 2.82
82 83 2.222227 AAGGAGGAGGTTTCCATTGC 57.778 50.000 0.00 0.00 46.64 3.56
83 84 1.376649 AGGAGGAGGTTTCCATTGCT 58.623 50.000 0.00 0.00 46.64 3.91
84 85 1.713078 AGGAGGAGGTTTCCATTGCTT 59.287 47.619 0.00 0.00 46.64 3.91
85 86 2.110721 AGGAGGAGGTTTCCATTGCTTT 59.889 45.455 0.00 0.00 46.64 3.51
86 87 3.333680 AGGAGGAGGTTTCCATTGCTTTA 59.666 43.478 0.00 0.00 46.64 1.85
87 88 4.086457 GGAGGAGGTTTCCATTGCTTTAA 58.914 43.478 0.00 0.00 46.64 1.52
88 89 4.526650 GGAGGAGGTTTCCATTGCTTTAAA 59.473 41.667 0.00 0.00 46.64 1.52
89 90 5.011635 GGAGGAGGTTTCCATTGCTTTAAAA 59.988 40.000 0.00 0.00 46.64 1.52
90 91 6.295859 GGAGGAGGTTTCCATTGCTTTAAAAT 60.296 38.462 0.00 0.00 46.64 1.82
91 92 6.466812 AGGAGGTTTCCATTGCTTTAAAATG 58.533 36.000 0.00 0.00 46.64 2.32
92 93 5.122239 GGAGGTTTCCATTGCTTTAAAATGC 59.878 40.000 0.00 0.00 43.45 3.56
93 94 5.868454 AGGTTTCCATTGCTTTAAAATGCT 58.132 33.333 1.68 0.00 34.35 3.79
94 95 7.003402 AGGTTTCCATTGCTTTAAAATGCTA 57.997 32.000 1.68 0.00 34.35 3.49
95 96 7.099120 AGGTTTCCATTGCTTTAAAATGCTAG 58.901 34.615 1.68 0.00 34.35 3.42
96 97 7.039082 AGGTTTCCATTGCTTTAAAATGCTAGA 60.039 33.333 0.00 0.00 34.35 2.43
97 98 7.276438 GGTTTCCATTGCTTTAAAATGCTAGAG 59.724 37.037 0.00 0.00 34.35 2.43
98 99 6.455360 TCCATTGCTTTAAAATGCTAGAGG 57.545 37.500 0.00 1.64 34.35 3.69
99 100 5.045872 CCATTGCTTTAAAATGCTAGAGGC 58.954 41.667 0.00 0.00 42.22 4.70
113 114 5.044428 GCTAGAGGCATGCATTAAGAATG 57.956 43.478 21.36 1.43 40.25 2.67
125 126 2.798834 TAAGAATGCACGTAAAGCGC 57.201 45.000 0.00 0.00 46.11 5.92
126 127 0.179225 AAGAATGCACGTAAAGCGCG 60.179 50.000 0.00 0.00 46.11 6.86
143 144 4.415501 GCGCTCGCGTGACTTGTG 62.416 66.667 13.13 0.00 42.09 3.33
144 145 2.729491 CGCTCGCGTGACTTGTGA 60.729 61.111 13.13 0.00 34.35 3.58
145 146 2.846918 GCTCGCGTGACTTGTGAC 59.153 61.111 13.13 0.00 0.00 3.67
146 147 1.661821 GCTCGCGTGACTTGTGACT 60.662 57.895 13.13 0.00 0.00 3.41
147 148 1.215655 GCTCGCGTGACTTGTGACTT 61.216 55.000 13.13 0.00 0.00 3.01
148 149 1.209128 CTCGCGTGACTTGTGACTTT 58.791 50.000 5.77 0.00 0.00 2.66
149 150 0.927537 TCGCGTGACTTGTGACTTTG 59.072 50.000 5.77 0.00 0.00 2.77
150 151 0.042188 CGCGTGACTTGTGACTTTGG 60.042 55.000 0.00 0.00 0.00 3.28
151 152 0.317020 GCGTGACTTGTGACTTTGGC 60.317 55.000 0.00 0.00 0.00 4.52
152 153 0.042188 CGTGACTTGTGACTTTGGCG 60.042 55.000 0.00 0.00 0.00 5.69
153 154 1.295792 GTGACTTGTGACTTTGGCGA 58.704 50.000 0.00 0.00 0.00 5.54
154 155 1.003866 GTGACTTGTGACTTTGGCGAC 60.004 52.381 0.00 0.00 0.00 5.19
155 156 0.232303 GACTTGTGACTTTGGCGACG 59.768 55.000 0.00 0.00 0.00 5.12
156 157 1.157870 ACTTGTGACTTTGGCGACGG 61.158 55.000 0.00 0.00 0.00 4.79
157 158 2.443957 CTTGTGACTTTGGCGACGGC 62.444 60.000 15.43 15.43 38.90 5.68
158 159 4.072088 GTGACTTTGGCGACGGCG 62.072 66.667 17.16 6.12 41.24 6.46
175 176 4.096558 GCGGTTCGCGGCAATCAA 62.097 61.111 6.13 0.00 44.55 2.57
176 177 2.558821 CGGTTCGCGGCAATCAAA 59.441 55.556 6.13 0.00 0.00 2.69
177 178 1.511887 CGGTTCGCGGCAATCAAAG 60.512 57.895 6.13 0.00 0.00 2.77
178 179 1.801512 GGTTCGCGGCAATCAAAGC 60.802 57.895 6.13 0.00 0.00 3.51
179 180 1.081509 GTTCGCGGCAATCAAAGCA 60.082 52.632 6.13 0.00 0.00 3.91
180 181 0.662970 GTTCGCGGCAATCAAAGCAA 60.663 50.000 6.13 0.00 0.00 3.91
181 182 0.031314 TTCGCGGCAATCAAAGCAAA 59.969 45.000 6.13 0.00 0.00 3.68
182 183 0.387112 TCGCGGCAATCAAAGCAAAG 60.387 50.000 6.13 0.00 0.00 2.77
183 184 0.387112 CGCGGCAATCAAAGCAAAGA 60.387 50.000 0.00 0.00 0.00 2.52
184 185 1.782044 GCGGCAATCAAAGCAAAGAA 58.218 45.000 0.00 0.00 0.00 2.52
185 186 2.134346 GCGGCAATCAAAGCAAAGAAA 58.866 42.857 0.00 0.00 0.00 2.52
186 187 2.543430 GCGGCAATCAAAGCAAAGAAAA 59.457 40.909 0.00 0.00 0.00 2.29
187 188 3.002144 GCGGCAATCAAAGCAAAGAAAAA 59.998 39.130 0.00 0.00 0.00 1.94
188 189 4.319694 GCGGCAATCAAAGCAAAGAAAAAT 60.320 37.500 0.00 0.00 0.00 1.82
189 190 5.107143 GCGGCAATCAAAGCAAAGAAAAATA 60.107 36.000 0.00 0.00 0.00 1.40
190 191 6.402442 GCGGCAATCAAAGCAAAGAAAAATAT 60.402 34.615 0.00 0.00 0.00 1.28
191 192 6.957077 CGGCAATCAAAGCAAAGAAAAATATG 59.043 34.615 0.00 0.00 0.00 1.78
192 193 7.148606 CGGCAATCAAAGCAAAGAAAAATATGA 60.149 33.333 0.00 0.00 0.00 2.15
193 194 8.671028 GGCAATCAAAGCAAAGAAAAATATGAT 58.329 29.630 0.00 0.00 0.00 2.45
197 198 9.947433 ATCAAAGCAAAGAAAAATATGATTCCA 57.053 25.926 0.00 0.00 0.00 3.53
198 199 9.775854 TCAAAGCAAAGAAAAATATGATTCCAA 57.224 25.926 0.00 0.00 0.00 3.53
200 201 9.783081 AAAGCAAAGAAAAATATGATTCCAAGT 57.217 25.926 0.00 0.00 0.00 3.16
201 202 9.783081 AAGCAAAGAAAAATATGATTCCAAGTT 57.217 25.926 0.00 0.00 0.00 2.66
202 203 9.783081 AGCAAAGAAAAATATGATTCCAAGTTT 57.217 25.926 0.00 0.00 0.00 2.66
227 228 9.719279 TTTGTTTAACTTACATACAAAAGACCG 57.281 29.630 0.00 0.00 36.20 4.79
228 229 7.863666 TGTTTAACTTACATACAAAAGACCGG 58.136 34.615 0.00 0.00 0.00 5.28
229 230 7.498570 TGTTTAACTTACATACAAAAGACCGGT 59.501 33.333 6.92 6.92 0.00 5.28
230 231 8.987890 GTTTAACTTACATACAAAAGACCGGTA 58.012 33.333 7.34 0.00 0.00 4.02
231 232 9.553064 TTTAACTTACATACAAAAGACCGGTAA 57.447 29.630 7.34 0.00 0.00 2.85
232 233 9.553064 TTAACTTACATACAAAAGACCGGTAAA 57.447 29.630 7.34 0.00 0.00 2.01
233 234 8.449251 AACTTACATACAAAAGACCGGTAAAA 57.551 30.769 7.34 0.00 0.00 1.52
234 235 8.449251 ACTTACATACAAAAGACCGGTAAAAA 57.551 30.769 7.34 0.00 0.00 1.94
235 236 8.562052 ACTTACATACAAAAGACCGGTAAAAAG 58.438 33.333 7.34 0.00 0.00 2.27
236 237 6.321848 ACATACAAAAGACCGGTAAAAAGG 57.678 37.500 7.34 0.00 0.00 3.11
237 238 6.063404 ACATACAAAAGACCGGTAAAAAGGA 58.937 36.000 7.34 0.00 0.00 3.36
238 239 6.717997 ACATACAAAAGACCGGTAAAAAGGAT 59.282 34.615 7.34 0.00 0.00 3.24
239 240 7.884354 ACATACAAAAGACCGGTAAAAAGGATA 59.116 33.333 7.34 0.00 0.00 2.59
240 241 6.812879 ACAAAAGACCGGTAAAAAGGATAG 57.187 37.500 7.34 0.00 0.00 2.08
241 242 5.182570 ACAAAAGACCGGTAAAAAGGATAGC 59.817 40.000 7.34 0.00 0.00 2.97
242 243 4.838904 AAGACCGGTAAAAAGGATAGCT 57.161 40.909 7.34 0.00 0.00 3.32
243 244 4.838904 AGACCGGTAAAAAGGATAGCTT 57.161 40.909 7.34 0.00 0.00 3.74
244 245 5.175388 AGACCGGTAAAAAGGATAGCTTT 57.825 39.130 7.34 0.00 0.00 3.51
245 246 4.941873 AGACCGGTAAAAAGGATAGCTTTG 59.058 41.667 7.34 0.00 0.00 2.77
246 247 3.442625 ACCGGTAAAAAGGATAGCTTTGC 59.557 43.478 4.49 0.00 0.00 3.68
247 248 3.442273 CCGGTAAAAAGGATAGCTTTGCA 59.558 43.478 0.00 0.00 0.00 4.08
248 249 4.097892 CCGGTAAAAAGGATAGCTTTGCAT 59.902 41.667 0.00 0.00 0.00 3.96
249 250 5.036737 CGGTAAAAAGGATAGCTTTGCATG 58.963 41.667 0.00 0.00 0.00 4.06
250 251 5.163663 CGGTAAAAAGGATAGCTTTGCATGA 60.164 40.000 0.00 0.00 0.00 3.07
251 252 6.460123 CGGTAAAAAGGATAGCTTTGCATGAT 60.460 38.462 0.00 0.00 0.00 2.45
252 253 7.255104 CGGTAAAAAGGATAGCTTTGCATGATA 60.255 37.037 0.00 0.00 0.00 2.15
253 254 8.579863 GGTAAAAAGGATAGCTTTGCATGATAT 58.420 33.333 0.00 0.00 0.00 1.63
254 255 9.617975 GTAAAAAGGATAGCTTTGCATGATATC 57.382 33.333 13.66 13.66 33.53 1.63
255 256 6.492007 AAAGGATAGCTTTGCATGATATCG 57.508 37.500 14.85 0.00 34.68 2.92
256 257 4.511527 AGGATAGCTTTGCATGATATCGG 58.488 43.478 14.85 0.00 34.68 4.18
257 258 4.223700 AGGATAGCTTTGCATGATATCGGA 59.776 41.667 14.85 0.00 34.68 4.55
258 259 4.569966 GGATAGCTTTGCATGATATCGGAG 59.430 45.833 14.85 0.00 34.68 4.63
259 260 3.758755 AGCTTTGCATGATATCGGAGA 57.241 42.857 0.00 0.00 45.75 3.71
260 261 4.077300 AGCTTTGCATGATATCGGAGAA 57.923 40.909 0.00 0.00 43.58 2.87
261 262 3.812053 AGCTTTGCATGATATCGGAGAAC 59.188 43.478 0.00 0.00 43.58 3.01
262 263 3.363378 GCTTTGCATGATATCGGAGAACG 60.363 47.826 0.00 0.00 43.58 3.95
263 264 3.452755 TTGCATGATATCGGAGAACGT 57.547 42.857 0.00 0.00 43.58 3.99
264 265 4.577834 TTGCATGATATCGGAGAACGTA 57.422 40.909 0.00 0.00 43.58 3.57
265 266 4.577834 TGCATGATATCGGAGAACGTAA 57.422 40.909 0.00 0.00 43.58 3.18
266 267 4.939271 TGCATGATATCGGAGAACGTAAA 58.061 39.130 0.00 0.00 43.58 2.01
267 268 4.743151 TGCATGATATCGGAGAACGTAAAC 59.257 41.667 0.00 0.00 43.58 2.01
268 269 4.743151 GCATGATATCGGAGAACGTAAACA 59.257 41.667 0.00 0.00 43.58 2.83
269 270 5.405571 GCATGATATCGGAGAACGTAAACAT 59.594 40.000 0.00 0.00 43.58 2.71
270 271 6.584942 GCATGATATCGGAGAACGTAAACATA 59.415 38.462 0.00 0.00 43.58 2.29
271 272 7.115805 GCATGATATCGGAGAACGTAAACATAA 59.884 37.037 0.00 0.00 43.58 1.90
272 273 8.974408 CATGATATCGGAGAACGTAAACATAAA 58.026 33.333 0.00 0.00 43.58 1.40
273 274 8.929827 TGATATCGGAGAACGTAAACATAAAA 57.070 30.769 0.00 0.00 43.58 1.52
274 275 9.368674 TGATATCGGAGAACGTAAACATAAAAA 57.631 29.630 0.00 0.00 43.58 1.94
278 279 8.188531 TCGGAGAACGTAAACATAAAAATAGG 57.811 34.615 0.00 0.00 44.69 2.57
279 280 7.818930 TCGGAGAACGTAAACATAAAAATAGGT 59.181 33.333 0.00 0.00 44.69 3.08
280 281 7.901377 CGGAGAACGTAAACATAAAAATAGGTG 59.099 37.037 0.00 0.00 37.93 4.00
281 282 8.938906 GGAGAACGTAAACATAAAAATAGGTGA 58.061 33.333 0.00 0.00 0.00 4.02
284 285 8.905103 AACGTAAACATAAAAATAGGTGATGC 57.095 30.769 0.00 0.00 0.00 3.91
285 286 7.477494 ACGTAAACATAAAAATAGGTGATGCC 58.523 34.615 0.00 0.00 37.58 4.40
297 298 2.930950 GGTGATGCCTGCTATTAACCA 58.069 47.619 0.00 0.00 0.00 3.67
298 299 2.618709 GGTGATGCCTGCTATTAACCAC 59.381 50.000 0.00 0.00 0.00 4.16
299 300 2.287915 GTGATGCCTGCTATTAACCACG 59.712 50.000 0.00 0.00 0.00 4.94
300 301 1.264288 GATGCCTGCTATTAACCACGC 59.736 52.381 0.00 0.00 0.00 5.34
301 302 0.746563 TGCCTGCTATTAACCACGCC 60.747 55.000 0.00 0.00 0.00 5.68
302 303 1.444917 GCCTGCTATTAACCACGCCC 61.445 60.000 0.00 0.00 0.00 6.13
303 304 0.180406 CCTGCTATTAACCACGCCCT 59.820 55.000 0.00 0.00 0.00 5.19
304 305 1.299541 CTGCTATTAACCACGCCCTG 58.700 55.000 0.00 0.00 0.00 4.45
312 313 2.358737 CCACGCCCTGGTGTCTTC 60.359 66.667 0.00 0.00 36.64 2.87
313 314 2.358737 CACGCCCTGGTGTCTTCC 60.359 66.667 0.00 0.00 36.64 3.46
314 315 4.003788 ACGCCCTGGTGTCTTCCG 62.004 66.667 0.00 0.00 32.98 4.30
315 316 4.003788 CGCCCTGGTGTCTTCCGT 62.004 66.667 0.00 0.00 0.00 4.69
316 317 2.358737 GCCCTGGTGTCTTCCGTG 60.359 66.667 0.00 0.00 0.00 4.94
317 318 2.358737 CCCTGGTGTCTTCCGTGC 60.359 66.667 0.00 0.00 0.00 5.34
318 319 2.738521 CCTGGTGTCTTCCGTGCG 60.739 66.667 0.00 0.00 0.00 5.34
319 320 2.029073 CTGGTGTCTTCCGTGCGT 59.971 61.111 0.00 0.00 0.00 5.24
320 321 2.022129 CTGGTGTCTTCCGTGCGTC 61.022 63.158 0.00 0.00 0.00 5.19
321 322 3.103911 GGTGTCTTCCGTGCGTCG 61.104 66.667 0.00 0.00 39.52 5.12
322 323 2.050714 GTGTCTTCCGTGCGTCGA 60.051 61.111 0.00 0.00 42.86 4.20
323 324 2.050714 TGTCTTCCGTGCGTCGAC 60.051 61.111 5.18 5.18 42.86 4.20
324 325 2.254651 GTCTTCCGTGCGTCGACT 59.745 61.111 14.70 0.00 42.86 4.18
325 326 1.796749 GTCTTCCGTGCGTCGACTC 60.797 63.158 14.70 6.24 42.86 3.36
326 327 2.870161 CTTCCGTGCGTCGACTCG 60.870 66.667 14.70 14.53 42.86 4.18
334 335 3.013990 CGTCGACTCGCTGATCGC 61.014 66.667 14.70 0.23 38.24 4.58
335 336 2.405594 GTCGACTCGCTGATCGCT 59.594 61.111 8.70 0.00 38.24 4.93
336 337 1.652930 GTCGACTCGCTGATCGCTC 60.653 63.158 8.70 0.00 38.24 5.03
337 338 2.720392 CGACTCGCTGATCGCTCG 60.720 66.667 7.71 6.62 38.27 5.03
338 339 2.710086 GACTCGCTGATCGCTCGA 59.290 61.111 7.71 0.00 38.27 4.04
339 340 1.652930 GACTCGCTGATCGCTCGAC 60.653 63.158 7.71 0.00 38.27 4.20
340 341 2.311080 GACTCGCTGATCGCTCGACA 62.311 60.000 7.71 0.00 38.27 4.35
341 342 1.653835 CTCGCTGATCGCTCGACAG 60.654 63.158 13.51 13.51 38.27 3.51
342 343 2.041366 CTCGCTGATCGCTCGACAGA 62.041 60.000 18.68 0.00 38.27 3.41
343 344 1.936880 CGCTGATCGCTCGACAGAC 60.937 63.158 18.68 12.07 36.13 3.51
344 345 1.431440 GCTGATCGCTCGACAGACT 59.569 57.895 18.68 0.00 34.07 3.24
345 346 0.591236 GCTGATCGCTCGACAGACTC 60.591 60.000 18.68 5.01 34.07 3.36
346 347 0.315788 CTGATCGCTCGACAGACTCG 60.316 60.000 12.92 0.00 44.44 4.18
347 348 1.019805 TGATCGCTCGACAGACTCGT 61.020 55.000 0.00 0.00 43.45 4.18
348 349 0.928922 GATCGCTCGACAGACTCGTA 59.071 55.000 0.00 0.00 43.45 3.43
349 350 0.931702 ATCGCTCGACAGACTCGTAG 59.068 55.000 0.00 0.00 43.45 3.51
350 351 1.297012 CGCTCGACAGACTCGTAGC 60.297 63.158 0.00 0.00 43.45 3.58
351 352 1.062845 GCTCGACAGACTCGTAGCC 59.937 63.158 0.00 0.00 43.45 3.93
352 353 1.370587 GCTCGACAGACTCGTAGCCT 61.371 60.000 0.00 0.00 43.45 4.58
353 354 0.375454 CTCGACAGACTCGTAGCCTG 59.625 60.000 0.00 0.00 43.45 4.85
354 355 0.321387 TCGACAGACTCGTAGCCTGT 60.321 55.000 4.12 4.12 43.45 4.00
356 357 0.452585 GACAGACTCGTAGCCTGTCC 59.547 60.000 15.39 3.99 46.60 4.02
357 358 0.966370 ACAGACTCGTAGCCTGTCCC 60.966 60.000 0.00 0.00 36.51 4.46
358 359 0.681564 CAGACTCGTAGCCTGTCCCT 60.682 60.000 0.00 0.00 0.00 4.20
359 360 0.681564 AGACTCGTAGCCTGTCCCTG 60.682 60.000 0.00 0.00 0.00 4.45
360 361 1.668101 GACTCGTAGCCTGTCCCTGG 61.668 65.000 0.00 0.00 0.00 4.45
361 362 1.682684 CTCGTAGCCTGTCCCTGGT 60.683 63.158 0.00 0.00 0.00 4.00
362 363 1.949847 CTCGTAGCCTGTCCCTGGTG 61.950 65.000 0.00 0.00 0.00 4.17
363 364 2.990479 GTAGCCTGTCCCTGGTGG 59.010 66.667 0.00 0.00 0.00 4.61
364 365 3.009115 TAGCCTGTCCCTGGTGGC 61.009 66.667 8.55 8.55 45.21 5.01
366 367 3.971702 GCCTGTCCCTGGTGGCTT 61.972 66.667 9.13 0.00 41.92 4.35
367 368 2.846532 CCTGTCCCTGGTGGCTTT 59.153 61.111 0.00 0.00 0.00 3.51
368 369 1.153756 CCTGTCCCTGGTGGCTTTT 59.846 57.895 0.00 0.00 0.00 2.27
369 370 0.469892 CCTGTCCCTGGTGGCTTTTT 60.470 55.000 0.00 0.00 0.00 1.94
370 371 0.961753 CTGTCCCTGGTGGCTTTTTC 59.038 55.000 0.00 0.00 0.00 2.29
371 372 0.555769 TGTCCCTGGTGGCTTTTTCT 59.444 50.000 0.00 0.00 0.00 2.52
372 373 0.961753 GTCCCTGGTGGCTTTTTCTG 59.038 55.000 0.00 0.00 0.00 3.02
373 374 0.555769 TCCCTGGTGGCTTTTTCTGT 59.444 50.000 0.00 0.00 0.00 3.41
374 375 1.063266 TCCCTGGTGGCTTTTTCTGTT 60.063 47.619 0.00 0.00 0.00 3.16
375 376 1.762370 CCCTGGTGGCTTTTTCTGTTT 59.238 47.619 0.00 0.00 0.00 2.83
376 377 2.224042 CCCTGGTGGCTTTTTCTGTTTC 60.224 50.000 0.00 0.00 0.00 2.78
377 378 2.224042 CCTGGTGGCTTTTTCTGTTTCC 60.224 50.000 0.00 0.00 0.00 3.13
378 379 2.695147 CTGGTGGCTTTTTCTGTTTCCT 59.305 45.455 0.00 0.00 0.00 3.36
379 380 2.693074 TGGTGGCTTTTTCTGTTTCCTC 59.307 45.455 0.00 0.00 0.00 3.71
380 381 2.959030 GGTGGCTTTTTCTGTTTCCTCT 59.041 45.455 0.00 0.00 0.00 3.69
381 382 3.384789 GGTGGCTTTTTCTGTTTCCTCTT 59.615 43.478 0.00 0.00 0.00 2.85
382 383 4.583073 GGTGGCTTTTTCTGTTTCCTCTTA 59.417 41.667 0.00 0.00 0.00 2.10
383 384 5.278512 GGTGGCTTTTTCTGTTTCCTCTTAG 60.279 44.000 0.00 0.00 0.00 2.18
384 385 5.299531 GTGGCTTTTTCTGTTTCCTCTTAGT 59.700 40.000 0.00 0.00 0.00 2.24
385 386 5.891551 TGGCTTTTTCTGTTTCCTCTTAGTT 59.108 36.000 0.00 0.00 0.00 2.24
386 387 6.379988 TGGCTTTTTCTGTTTCCTCTTAGTTT 59.620 34.615 0.00 0.00 0.00 2.66
387 388 6.918569 GGCTTTTTCTGTTTCCTCTTAGTTTC 59.081 38.462 0.00 0.00 0.00 2.78
388 389 7.201830 GGCTTTTTCTGTTTCCTCTTAGTTTCT 60.202 37.037 0.00 0.00 0.00 2.52
389 390 8.191446 GCTTTTTCTGTTTCCTCTTAGTTTCTT 58.809 33.333 0.00 0.00 0.00 2.52
391 392 9.855021 TTTTTCTGTTTCCTCTTAGTTTCTTTG 57.145 29.630 0.00 0.00 0.00 2.77
392 393 7.568199 TTCTGTTTCCTCTTAGTTTCTTTGG 57.432 36.000 0.00 0.00 0.00 3.28
393 394 6.062095 TCTGTTTCCTCTTAGTTTCTTTGGG 58.938 40.000 0.00 0.00 0.00 4.12
394 395 4.583073 TGTTTCCTCTTAGTTTCTTTGGGC 59.417 41.667 0.00 0.00 0.00 5.36
395 396 4.447138 TTCCTCTTAGTTTCTTTGGGCA 57.553 40.909 0.00 0.00 0.00 5.36
396 397 4.657814 TCCTCTTAGTTTCTTTGGGCAT 57.342 40.909 0.00 0.00 0.00 4.40
397 398 4.589908 TCCTCTTAGTTTCTTTGGGCATC 58.410 43.478 0.00 0.00 0.00 3.91
398 399 4.042809 TCCTCTTAGTTTCTTTGGGCATCA 59.957 41.667 0.00 0.00 0.00 3.07
399 400 4.952335 CCTCTTAGTTTCTTTGGGCATCAT 59.048 41.667 0.00 0.00 0.00 2.45
400 401 5.420104 CCTCTTAGTTTCTTTGGGCATCATT 59.580 40.000 0.00 0.00 0.00 2.57
401 402 6.271488 TCTTAGTTTCTTTGGGCATCATTG 57.729 37.500 0.00 0.00 0.00 2.82
402 403 5.774690 TCTTAGTTTCTTTGGGCATCATTGT 59.225 36.000 0.00 0.00 0.00 2.71
403 404 4.261578 AGTTTCTTTGGGCATCATTGTG 57.738 40.909 0.00 0.00 0.00 3.33
404 405 2.738314 GTTTCTTTGGGCATCATTGTGC 59.262 45.455 3.53 3.53 44.31 4.57
405 406 1.927487 TCTTTGGGCATCATTGTGCT 58.073 45.000 9.86 0.00 44.45 4.40
406 407 1.546923 TCTTTGGGCATCATTGTGCTG 59.453 47.619 9.86 0.00 44.45 4.41
407 408 1.274167 CTTTGGGCATCATTGTGCTGT 59.726 47.619 9.86 0.00 44.45 4.40
408 409 0.604073 TTGGGCATCATTGTGCTGTG 59.396 50.000 9.86 0.00 44.45 3.66
409 410 1.252215 TGGGCATCATTGTGCTGTGG 61.252 55.000 9.86 0.00 44.45 4.17
410 411 1.153706 GGCATCATTGTGCTGTGGC 60.154 57.895 9.86 0.00 44.45 5.01
411 412 1.153706 GCATCATTGTGCTGTGGCC 60.154 57.895 0.00 0.00 41.82 5.36
412 413 1.514087 CATCATTGTGCTGTGGCCC 59.486 57.895 0.00 0.00 37.74 5.80
413 414 1.683365 ATCATTGTGCTGTGGCCCC 60.683 57.895 0.00 0.00 37.74 5.80
414 415 3.384532 CATTGTGCTGTGGCCCCC 61.385 66.667 0.00 0.00 37.74 5.40
419 420 4.531426 TGCTGTGGCCCCCGTTTT 62.531 61.111 0.00 0.00 37.74 2.43
420 421 3.230990 GCTGTGGCCCCCGTTTTT 61.231 61.111 0.00 0.00 0.00 1.94
442 443 3.817709 TTCTTTTTGGTCTTGCTTGGG 57.182 42.857 0.00 0.00 0.00 4.12
443 444 3.025322 TCTTTTTGGTCTTGCTTGGGA 57.975 42.857 0.00 0.00 0.00 4.37
444 445 2.693074 TCTTTTTGGTCTTGCTTGGGAC 59.307 45.455 0.00 0.00 0.00 4.46
445 446 1.028905 TTTTGGTCTTGCTTGGGACG 58.971 50.000 0.00 0.00 33.70 4.79
446 447 0.106918 TTTGGTCTTGCTTGGGACGT 60.107 50.000 0.00 0.00 33.70 4.34
447 448 0.817634 TTGGTCTTGCTTGGGACGTG 60.818 55.000 0.00 0.00 33.70 4.49
448 449 1.966451 GGTCTTGCTTGGGACGTGG 60.966 63.158 0.00 0.00 33.70 4.94
449 450 1.227853 GTCTTGCTTGGGACGTGGT 60.228 57.895 0.00 0.00 0.00 4.16
450 451 0.818040 GTCTTGCTTGGGACGTGGTT 60.818 55.000 0.00 0.00 0.00 3.67
451 452 0.817634 TCTTGCTTGGGACGTGGTTG 60.818 55.000 0.00 0.00 0.00 3.77
452 453 1.077357 TTGCTTGGGACGTGGTTGT 60.077 52.632 0.00 0.00 0.00 3.32
453 454 0.180642 TTGCTTGGGACGTGGTTGTA 59.819 50.000 0.00 0.00 0.00 2.41
454 455 0.398696 TGCTTGGGACGTGGTTGTAT 59.601 50.000 0.00 0.00 0.00 2.29
455 456 0.802494 GCTTGGGACGTGGTTGTATG 59.198 55.000 0.00 0.00 0.00 2.39
456 457 1.448985 CTTGGGACGTGGTTGTATGG 58.551 55.000 0.00 0.00 0.00 2.74
457 458 1.002659 CTTGGGACGTGGTTGTATGGA 59.997 52.381 0.00 0.00 0.00 3.41
458 459 0.611200 TGGGACGTGGTTGTATGGAG 59.389 55.000 0.00 0.00 0.00 3.86
459 460 0.611714 GGGACGTGGTTGTATGGAGT 59.388 55.000 0.00 0.00 0.00 3.85
460 461 1.002773 GGGACGTGGTTGTATGGAGTT 59.997 52.381 0.00 0.00 0.00 3.01
461 462 2.234414 GGGACGTGGTTGTATGGAGTTA 59.766 50.000 0.00 0.00 0.00 2.24
462 463 3.118519 GGGACGTGGTTGTATGGAGTTAT 60.119 47.826 0.00 0.00 0.00 1.89
463 464 4.099881 GGGACGTGGTTGTATGGAGTTATA 59.900 45.833 0.00 0.00 0.00 0.98
464 465 5.045872 GGACGTGGTTGTATGGAGTTATAC 58.954 45.833 0.00 0.00 34.78 1.47
465 466 5.163478 GGACGTGGTTGTATGGAGTTATACT 60.163 44.000 0.00 0.00 35.16 2.12
466 467 6.290294 ACGTGGTTGTATGGAGTTATACTT 57.710 37.500 0.00 0.00 35.16 2.24
467 468 6.704310 ACGTGGTTGTATGGAGTTATACTTT 58.296 36.000 0.00 0.00 35.16 2.66
468 469 7.839907 ACGTGGTTGTATGGAGTTATACTTTA 58.160 34.615 0.00 0.00 35.16 1.85
469 470 8.480501 ACGTGGTTGTATGGAGTTATACTTTAT 58.519 33.333 0.00 0.00 35.16 1.40
470 471 8.975439 CGTGGTTGTATGGAGTTATACTTTATC 58.025 37.037 0.00 0.00 35.16 1.75
504 505 4.197107 CGAAAGCCTGTTTCGGATAATC 57.803 45.455 11.18 0.00 45.17 1.75
505 506 3.871594 CGAAAGCCTGTTTCGGATAATCT 59.128 43.478 11.18 0.00 45.17 2.40
506 507 4.025647 CGAAAGCCTGTTTCGGATAATCTC 60.026 45.833 11.18 0.00 45.17 2.75
507 508 4.762289 AAGCCTGTTTCGGATAATCTCT 57.238 40.909 0.00 0.00 0.00 3.10
508 509 4.762289 AGCCTGTTTCGGATAATCTCTT 57.238 40.909 0.00 0.00 0.00 2.85
509 510 5.104259 AGCCTGTTTCGGATAATCTCTTT 57.896 39.130 0.00 0.00 0.00 2.52
510 511 4.878397 AGCCTGTTTCGGATAATCTCTTTG 59.122 41.667 0.00 0.00 0.00 2.77
511 512 4.496507 GCCTGTTTCGGATAATCTCTTTGC 60.497 45.833 0.00 0.00 0.00 3.68
512 513 4.635765 CCTGTTTCGGATAATCTCTTTGCA 59.364 41.667 0.00 0.00 0.00 4.08
513 514 5.447818 CCTGTTTCGGATAATCTCTTTGCAC 60.448 44.000 0.00 0.00 0.00 4.57
514 515 5.245531 TGTTTCGGATAATCTCTTTGCACT 58.754 37.500 0.00 0.00 0.00 4.40
515 516 6.403049 TGTTTCGGATAATCTCTTTGCACTA 58.597 36.000 0.00 0.00 0.00 2.74
516 517 6.312918 TGTTTCGGATAATCTCTTTGCACTAC 59.687 38.462 0.00 0.00 0.00 2.73
517 518 5.592104 TCGGATAATCTCTTTGCACTACA 57.408 39.130 0.00 0.00 0.00 2.74
518 519 5.972935 TCGGATAATCTCTTTGCACTACAA 58.027 37.500 0.00 0.00 36.13 2.41
519 520 6.403049 TCGGATAATCTCTTTGCACTACAAA 58.597 36.000 0.00 0.00 46.01 2.83
532 533 8.641499 TTTGCACTACAAAAATAACTTCCAAG 57.359 30.769 0.00 0.00 45.22 3.61
533 534 7.341445 TGCACTACAAAAATAACTTCCAAGT 57.659 32.000 0.00 0.00 42.04 3.16
534 535 8.254508 TTGCACTACAAAAATAACTTCCAAGTT 58.745 29.630 9.58 9.58 42.77 2.66
535 536 8.254508 TGCACTACAAAAATAACTTCCAAGTTT 58.745 29.630 9.92 0.00 46.52 2.66
536 537 8.752254 GCACTACAAAAATAACTTCCAAGTTTC 58.248 33.333 9.92 0.00 46.52 2.78
541 542 9.586435 ACAAAAATAACTTCCAAGTTTCTTCAG 57.414 29.630 9.92 1.23 46.52 3.02
542 543 9.586435 CAAAAATAACTTCCAAGTTTCTTCAGT 57.414 29.630 9.92 0.00 46.52 3.41
546 547 6.378710 AACTTCCAAGTTTCTTCAGTTAGC 57.621 37.500 0.00 0.00 46.52 3.09
547 548 5.437060 ACTTCCAAGTTTCTTCAGTTAGCA 58.563 37.500 0.00 0.00 35.21 3.49
548 549 5.529060 ACTTCCAAGTTTCTTCAGTTAGCAG 59.471 40.000 0.00 0.00 35.21 4.24
549 550 5.036117 TCCAAGTTTCTTCAGTTAGCAGT 57.964 39.130 0.00 0.00 0.00 4.40
550 551 4.816385 TCCAAGTTTCTTCAGTTAGCAGTG 59.184 41.667 0.00 0.00 0.00 3.66
551 552 4.576463 CCAAGTTTCTTCAGTTAGCAGTGT 59.424 41.667 0.00 0.00 0.00 3.55
552 553 5.504665 CCAAGTTTCTTCAGTTAGCAGTGTG 60.505 44.000 0.00 0.00 0.00 3.82
553 554 3.561725 AGTTTCTTCAGTTAGCAGTGTGC 59.438 43.478 0.00 0.00 45.46 4.57
576 577 7.848716 GCTTTGTGCATGTGAGAATATAATC 57.151 36.000 0.00 0.00 42.31 1.75
577 578 7.420002 GCTTTGTGCATGTGAGAATATAATCA 58.580 34.615 0.00 0.00 42.31 2.57
578 579 7.377928 GCTTTGTGCATGTGAGAATATAATCAC 59.622 37.037 11.51 11.51 42.62 3.06
588 589 7.284351 GTGAGAATATAATCACGTTTAGCTGC 58.716 38.462 0.00 0.00 36.76 5.25
589 590 6.423905 TGAGAATATAATCACGTTTAGCTGCC 59.576 38.462 0.00 0.00 0.00 4.85
590 591 5.701290 AGAATATAATCACGTTTAGCTGCCC 59.299 40.000 0.00 0.00 0.00 5.36
591 592 1.647346 TAATCACGTTTAGCTGCCCG 58.353 50.000 0.00 0.00 0.00 6.13
592 593 0.321298 AATCACGTTTAGCTGCCCGT 60.321 50.000 0.00 0.00 0.00 5.28
593 594 2.860293 CACGTTTAGCTGCCCGTG 59.140 61.111 15.95 15.95 43.70 4.94
594 595 2.738480 ACGTTTAGCTGCCCGTGA 59.262 55.556 0.00 0.00 31.43 4.35
595 596 1.295423 ACGTTTAGCTGCCCGTGAT 59.705 52.632 0.00 0.00 31.43 3.06
596 597 0.321298 ACGTTTAGCTGCCCGTGATT 60.321 50.000 0.00 0.00 31.43 2.57
597 598 0.802494 CGTTTAGCTGCCCGTGATTT 59.198 50.000 0.00 0.00 0.00 2.17
598 599 1.202031 CGTTTAGCTGCCCGTGATTTC 60.202 52.381 0.00 0.00 0.00 2.17
599 600 1.132453 GTTTAGCTGCCCGTGATTTCC 59.868 52.381 0.00 0.00 0.00 3.13
600 601 0.742990 TTAGCTGCCCGTGATTTCCG 60.743 55.000 0.00 0.00 0.00 4.30
601 602 2.587322 TAGCTGCCCGTGATTTCCGG 62.587 60.000 0.00 0.00 45.07 5.14
607 608 3.794270 CGTGATTTCCGGACGCAT 58.206 55.556 1.83 0.00 0.00 4.73
608 609 2.966324 CGTGATTTCCGGACGCATA 58.034 52.632 1.83 0.00 0.00 3.14
609 610 1.497991 CGTGATTTCCGGACGCATAT 58.502 50.000 1.83 0.00 0.00 1.78
610 611 1.455786 CGTGATTTCCGGACGCATATC 59.544 52.381 1.83 3.23 0.00 1.63
611 612 1.798813 GTGATTTCCGGACGCATATCC 59.201 52.381 1.83 0.00 35.16 2.59
612 613 1.270625 TGATTTCCGGACGCATATCCC 60.271 52.381 1.83 0.00 35.03 3.85
613 614 0.320421 ATTTCCGGACGCATATCCCG 60.320 55.000 1.83 0.00 42.64 5.14
618 619 4.295119 GACGCATATCCCGGCCGT 62.295 66.667 26.12 8.42 0.00 5.68
619 620 4.602259 ACGCATATCCCGGCCGTG 62.602 66.667 26.12 14.27 0.00 4.94
620 621 4.293648 CGCATATCCCGGCCGTGA 62.294 66.667 26.12 20.42 0.00 4.35
621 622 2.357517 GCATATCCCGGCCGTGAG 60.358 66.667 26.12 12.76 0.00 3.51
622 623 2.867855 GCATATCCCGGCCGTGAGA 61.868 63.158 26.12 17.21 0.00 3.27
623 624 1.975327 CATATCCCGGCCGTGAGAT 59.025 57.895 26.12 23.37 0.00 2.75
624 625 0.321671 CATATCCCGGCCGTGAGATT 59.678 55.000 26.12 5.85 0.00 2.40
625 626 1.056660 ATATCCCGGCCGTGAGATTT 58.943 50.000 26.12 14.71 0.00 2.17
626 627 0.834612 TATCCCGGCCGTGAGATTTT 59.165 50.000 26.12 5.01 0.00 1.82
627 628 0.034477 ATCCCGGCCGTGAGATTTTT 60.034 50.000 26.12 0.00 0.00 1.94
945 2563 0.598562 AATCCCATCTCGTCCGATCG 59.401 55.000 8.51 8.51 0.00 3.69
985 2603 2.428530 TGGCTCTGGCTCGCTATATATG 59.571 50.000 0.00 0.00 38.73 1.78
1049 2671 2.685017 TCCATCTCCAGCCGCTGT 60.685 61.111 18.98 0.00 0.00 4.40
1072 2694 3.593794 GTCGCCGAGCCCGTCTAT 61.594 66.667 0.00 0.00 0.00 1.98
1073 2695 3.285215 TCGCCGAGCCCGTCTATC 61.285 66.667 0.00 0.00 0.00 2.08
1074 2696 3.288290 CGCCGAGCCCGTCTATCT 61.288 66.667 0.00 0.00 0.00 1.98
1075 2697 2.646143 GCCGAGCCCGTCTATCTC 59.354 66.667 0.00 0.00 0.00 2.75
1076 2698 1.899534 GCCGAGCCCGTCTATCTCT 60.900 63.158 0.00 0.00 0.00 3.10
1077 2699 1.858372 GCCGAGCCCGTCTATCTCTC 61.858 65.000 0.00 0.00 0.00 3.20
1078 2700 0.250553 CCGAGCCCGTCTATCTCTCT 60.251 60.000 0.00 0.00 0.00 3.10
1079 2701 1.153353 CGAGCCCGTCTATCTCTCTC 58.847 60.000 0.00 0.00 0.00 3.20
1080 2702 1.270625 CGAGCCCGTCTATCTCTCTCT 60.271 57.143 0.00 0.00 0.00 3.10
1081 2703 2.423577 GAGCCCGTCTATCTCTCTCTC 58.576 57.143 0.00 0.00 0.00 3.20
1082 2704 2.038557 GAGCCCGTCTATCTCTCTCTCT 59.961 54.545 0.00 0.00 0.00 3.10
1083 2705 2.038557 AGCCCGTCTATCTCTCTCTCTC 59.961 54.545 0.00 0.00 0.00 3.20
1084 2706 2.038557 GCCCGTCTATCTCTCTCTCTCT 59.961 54.545 0.00 0.00 0.00 3.10
1085 2707 3.864921 GCCCGTCTATCTCTCTCTCTCTC 60.865 56.522 0.00 0.00 0.00 3.20
1086 2708 3.578716 CCCGTCTATCTCTCTCTCTCTCT 59.421 52.174 0.00 0.00 0.00 3.10
1087 2709 4.322049 CCCGTCTATCTCTCTCTCTCTCTC 60.322 54.167 0.00 0.00 0.00 3.20
1088 2710 4.524714 CCGTCTATCTCTCTCTCTCTCTCT 59.475 50.000 0.00 0.00 0.00 3.10
1089 2711 5.336055 CCGTCTATCTCTCTCTCTCTCTCTC 60.336 52.000 0.00 0.00 0.00 3.20
1090 2712 5.475220 CGTCTATCTCTCTCTCTCTCTCTCT 59.525 48.000 0.00 0.00 0.00 3.10
1091 2713 6.348950 CGTCTATCTCTCTCTCTCTCTCTCTC 60.349 50.000 0.00 0.00 0.00 3.20
1092 2714 6.719370 GTCTATCTCTCTCTCTCTCTCTCTCT 59.281 46.154 0.00 0.00 0.00 3.10
1093 2715 6.945435 TCTATCTCTCTCTCTCTCTCTCTCTC 59.055 46.154 0.00 0.00 0.00 3.20
1219 2841 2.584608 CCGACGGGCAGGAATTCT 59.415 61.111 5.81 0.00 0.00 2.40
1310 2932 1.004440 GACAACAAGAGGCTCGGCT 60.004 57.895 9.22 0.00 0.00 5.52
1344 2978 2.123033 GAGGAGGAGGAGGAGGGC 60.123 72.222 0.00 0.00 0.00 5.19
1556 3190 3.797546 GCTCAAGGTCAGCTGCGC 61.798 66.667 9.47 0.00 33.75 6.09
1631 3265 0.318275 GAGGCGACGAGTCCATGATC 60.318 60.000 0.00 0.00 0.00 2.92
1646 3280 6.825213 AGTCCATGATCGATCATCTTTTTCAA 59.175 34.615 32.92 12.75 45.23 2.69
1647 3281 7.501559 AGTCCATGATCGATCATCTTTTTCAAT 59.498 33.333 32.92 11.03 45.23 2.57
1675 3309 4.016444 TGAAGACTTTTTCTGCTGGTGTT 58.984 39.130 0.00 0.00 33.46 3.32
1676 3310 4.142403 TGAAGACTTTTTCTGCTGGTGTTG 60.142 41.667 0.00 0.00 33.46 3.33
1749 3383 8.311836 CAGTCCTCAATGTAAACCTAGAACTTA 58.688 37.037 0.00 0.00 0.00 2.24
1761 3395 3.614616 CCTAGAACTTAAAGCAGAGCGTG 59.385 47.826 0.00 0.00 0.00 5.34
1928 3621 1.120184 TACCTGCCACCGGTGTTACA 61.120 55.000 31.80 24.09 35.98 2.41
2090 3801 5.712152 ACTCTCAAGCAAAATACCTTTGG 57.288 39.130 0.00 0.00 44.03 3.28
2248 3964 6.173339 ACTCTGATGGTGTATTGTGGTTTAG 58.827 40.000 0.00 0.00 0.00 1.85
2350 4066 5.130643 GGCCTTACAAAGAAGTACCTCCTAT 59.869 44.000 0.00 0.00 0.00 2.57
2353 4069 7.686371 GCCTTACAAAGAAGTACCTCCTATACC 60.686 44.444 0.00 0.00 0.00 2.73
2384 4100 7.713764 AATTTGTTTCCAGTTAATGCAAGAC 57.286 32.000 0.00 0.00 0.00 3.01
2431 4147 5.408356 CAAGGATTGCCTGAATGAAAGAAG 58.592 41.667 0.00 0.00 46.28 2.85
2432 4148 4.927049 AGGATTGCCTGAATGAAAGAAGA 58.073 39.130 0.00 0.00 44.90 2.87
2433 4149 5.327732 AGGATTGCCTGAATGAAAGAAGAA 58.672 37.500 0.00 0.00 44.90 2.52
2434 4150 5.418209 AGGATTGCCTGAATGAAAGAAGAAG 59.582 40.000 0.00 0.00 44.90 2.85
2470 4186 1.003580 TGGAAGAAGTGCATCTGGACC 59.996 52.381 0.00 0.00 37.04 4.46
2483 4199 2.111999 CTGGACCACCACCACACGAT 62.112 60.000 0.00 0.00 41.77 3.73
2575 4295 8.854117 AGAGAATGAAAGACAAGCTTACAAATT 58.146 29.630 0.00 0.00 35.24 1.82
2578 4298 6.612247 TGAAAGACAAGCTTACAAATTCGA 57.388 33.333 0.00 0.00 35.24 3.71
2579 4299 7.022055 TGAAAGACAAGCTTACAAATTCGAA 57.978 32.000 0.00 0.00 35.24 3.71
2606 4326 1.996292 TGCGAGTAGTCATGCTGTTC 58.004 50.000 0.00 0.00 0.00 3.18
2609 4329 2.346847 GCGAGTAGTCATGCTGTTCTTG 59.653 50.000 0.00 0.00 0.00 3.02
2695 4418 3.361977 CACCCCCAAAAGACGCCG 61.362 66.667 0.00 0.00 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 7.155328 ACTATCATTATAAAAGCACGAGAGGG 58.845 38.462 0.00 0.00 37.78 4.30
7 8 9.347934 CTACTATCATTATAAAAGCACGAGAGG 57.652 37.037 0.00 0.00 0.00 3.69
20 21 9.110502 CCGTGAGCAGTATCTACTATCATTATA 57.889 37.037 7.37 0.00 35.22 0.98
21 22 7.067615 CCCGTGAGCAGTATCTACTATCATTAT 59.932 40.741 7.37 0.00 35.22 1.28
22 23 6.374613 CCCGTGAGCAGTATCTACTATCATTA 59.625 42.308 7.37 0.00 35.22 1.90
23 24 5.184096 CCCGTGAGCAGTATCTACTATCATT 59.816 44.000 7.37 0.00 35.22 2.57
24 25 4.702612 CCCGTGAGCAGTATCTACTATCAT 59.297 45.833 7.37 0.00 35.22 2.45
25 26 4.072839 CCCGTGAGCAGTATCTACTATCA 58.927 47.826 0.00 0.00 34.13 2.15
26 27 4.154556 GTCCCGTGAGCAGTATCTACTATC 59.845 50.000 0.00 0.00 34.13 2.08
27 28 4.073549 GTCCCGTGAGCAGTATCTACTAT 58.926 47.826 0.00 0.00 34.13 2.12
28 29 3.118149 TGTCCCGTGAGCAGTATCTACTA 60.118 47.826 0.00 0.00 34.13 1.82
29 30 2.299521 GTCCCGTGAGCAGTATCTACT 58.700 52.381 0.00 0.00 36.90 2.57
30 31 2.022195 TGTCCCGTGAGCAGTATCTAC 58.978 52.381 0.00 0.00 0.00 2.59
31 32 2.430248 TGTCCCGTGAGCAGTATCTA 57.570 50.000 0.00 0.00 0.00 1.98
32 33 1.410517 CATGTCCCGTGAGCAGTATCT 59.589 52.381 0.00 0.00 0.00 1.98
33 34 1.409064 TCATGTCCCGTGAGCAGTATC 59.591 52.381 0.00 0.00 0.00 2.24
34 35 1.137086 GTCATGTCCCGTGAGCAGTAT 59.863 52.381 0.00 0.00 29.40 2.12
35 36 0.530744 GTCATGTCCCGTGAGCAGTA 59.469 55.000 0.00 0.00 29.40 2.74
36 37 1.293498 GTCATGTCCCGTGAGCAGT 59.707 57.895 0.00 0.00 29.40 4.40
37 38 1.448540 GGTCATGTCCCGTGAGCAG 60.449 63.158 9.98 0.00 44.32 4.24
38 39 2.662596 GGTCATGTCCCGTGAGCA 59.337 61.111 9.98 0.00 44.32 4.26
39 40 1.003839 TTGGTCATGTCCCGTGAGC 60.004 57.895 6.53 8.33 44.90 4.26
40 41 0.034756 TGTTGGTCATGTCCCGTGAG 59.965 55.000 6.53 0.00 29.40 3.51
41 42 0.690192 ATGTTGGTCATGTCCCGTGA 59.310 50.000 6.53 0.00 35.19 4.35
42 43 2.394930 TATGTTGGTCATGTCCCGTG 57.605 50.000 6.53 0.00 37.91 4.94
43 44 3.426787 TTTATGTTGGTCATGTCCCGT 57.573 42.857 6.53 0.00 37.91 5.28
44 45 3.128589 CCTTTTATGTTGGTCATGTCCCG 59.871 47.826 6.53 0.00 37.91 5.14
45 46 4.340617 TCCTTTTATGTTGGTCATGTCCC 58.659 43.478 6.53 2.04 37.91 4.46
46 47 4.399303 CCTCCTTTTATGTTGGTCATGTCC 59.601 45.833 1.55 1.55 37.91 4.02
47 48 5.253330 TCCTCCTTTTATGTTGGTCATGTC 58.747 41.667 0.00 0.00 37.91 3.06
48 49 5.255397 TCCTCCTTTTATGTTGGTCATGT 57.745 39.130 0.00 0.00 37.91 3.21
49 50 4.641989 CCTCCTCCTTTTATGTTGGTCATG 59.358 45.833 0.00 0.00 37.91 3.07
50 51 4.292306 ACCTCCTCCTTTTATGTTGGTCAT 59.708 41.667 0.00 0.00 40.25 3.06
51 52 3.655777 ACCTCCTCCTTTTATGTTGGTCA 59.344 43.478 0.00 0.00 0.00 4.02
52 53 4.302559 ACCTCCTCCTTTTATGTTGGTC 57.697 45.455 0.00 0.00 0.00 4.02
53 54 4.741928 AACCTCCTCCTTTTATGTTGGT 57.258 40.909 0.00 0.00 0.00 3.67
54 55 4.462834 GGAAACCTCCTCCTTTTATGTTGG 59.537 45.833 0.00 0.00 38.88 3.77
55 56 5.076873 TGGAAACCTCCTCCTTTTATGTTG 58.923 41.667 0.00 0.00 42.94 3.33
56 57 5.333566 TGGAAACCTCCTCCTTTTATGTT 57.666 39.130 0.00 0.00 42.94 2.71
57 58 5.536497 ATGGAAACCTCCTCCTTTTATGT 57.464 39.130 0.00 0.00 42.94 2.29
58 59 5.394553 GCAATGGAAACCTCCTCCTTTTATG 60.395 44.000 0.00 0.00 42.94 1.90
59 60 4.711846 GCAATGGAAACCTCCTCCTTTTAT 59.288 41.667 0.00 0.00 42.94 1.40
60 61 4.086457 GCAATGGAAACCTCCTCCTTTTA 58.914 43.478 0.00 0.00 42.94 1.52
61 62 2.899900 GCAATGGAAACCTCCTCCTTTT 59.100 45.455 0.00 0.00 42.94 2.27
62 63 2.110721 AGCAATGGAAACCTCCTCCTTT 59.889 45.455 0.00 0.00 42.94 3.11
63 64 1.713078 AGCAATGGAAACCTCCTCCTT 59.287 47.619 0.00 0.00 42.94 3.36
64 65 1.376649 AGCAATGGAAACCTCCTCCT 58.623 50.000 0.00 0.00 42.94 3.69
65 66 2.222227 AAGCAATGGAAACCTCCTCC 57.778 50.000 0.00 0.00 42.94 4.30
66 67 5.722021 TTTAAAGCAATGGAAACCTCCTC 57.278 39.130 0.00 0.00 42.94 3.71
67 68 6.466812 CATTTTAAAGCAATGGAAACCTCCT 58.533 36.000 0.00 0.00 42.94 3.69
68 69 5.122239 GCATTTTAAAGCAATGGAAACCTCC 59.878 40.000 1.60 0.00 42.81 4.30
69 70 5.934043 AGCATTTTAAAGCAATGGAAACCTC 59.066 36.000 2.68 0.00 32.98 3.85
70 71 5.868454 AGCATTTTAAAGCAATGGAAACCT 58.132 33.333 2.68 0.00 32.98 3.50
71 72 7.096551 TCTAGCATTTTAAAGCAATGGAAACC 58.903 34.615 2.68 0.00 32.98 3.27
72 73 7.276438 CCTCTAGCATTTTAAAGCAATGGAAAC 59.724 37.037 2.68 0.00 32.98 2.78
73 74 7.322664 CCTCTAGCATTTTAAAGCAATGGAAA 58.677 34.615 2.68 0.00 32.98 3.13
74 75 6.627953 GCCTCTAGCATTTTAAAGCAATGGAA 60.628 38.462 2.68 0.00 42.97 3.53
75 76 5.163519 GCCTCTAGCATTTTAAAGCAATGGA 60.164 40.000 2.68 0.00 42.97 3.41
76 77 5.045872 GCCTCTAGCATTTTAAAGCAATGG 58.954 41.667 2.68 1.17 42.97 3.16
90 91 4.517832 CATTCTTAATGCATGCCTCTAGCA 59.482 41.667 16.68 0.00 43.71 3.49
91 92 5.044428 CATTCTTAATGCATGCCTCTAGC 57.956 43.478 16.68 0.00 35.28 3.42
126 127 4.415501 CACAAGTCACGCGAGCGC 62.416 66.667 15.93 8.99 44.19 5.92
127 128 2.729491 TCACAAGTCACGCGAGCG 60.729 61.111 15.93 16.38 46.03 5.03
128 129 1.215655 AAGTCACAAGTCACGCGAGC 61.216 55.000 15.93 0.75 0.00 5.03
129 130 1.071239 CAAAGTCACAAGTCACGCGAG 60.071 52.381 15.93 4.59 0.00 5.03
130 131 0.927537 CAAAGTCACAAGTCACGCGA 59.072 50.000 15.93 0.00 0.00 5.87
131 132 0.042188 CCAAAGTCACAAGTCACGCG 60.042 55.000 3.53 3.53 0.00 6.01
132 133 0.317020 GCCAAAGTCACAAGTCACGC 60.317 55.000 0.00 0.00 0.00 5.34
133 134 0.042188 CGCCAAAGTCACAAGTCACG 60.042 55.000 0.00 0.00 0.00 4.35
134 135 1.003866 GTCGCCAAAGTCACAAGTCAC 60.004 52.381 0.00 0.00 0.00 3.67
135 136 1.295792 GTCGCCAAAGTCACAAGTCA 58.704 50.000 0.00 0.00 0.00 3.41
136 137 0.232303 CGTCGCCAAAGTCACAAGTC 59.768 55.000 0.00 0.00 0.00 3.01
137 138 1.157870 CCGTCGCCAAAGTCACAAGT 61.158 55.000 0.00 0.00 0.00 3.16
138 139 1.569493 CCGTCGCCAAAGTCACAAG 59.431 57.895 0.00 0.00 0.00 3.16
139 140 2.539338 GCCGTCGCCAAAGTCACAA 61.539 57.895 0.00 0.00 0.00 3.33
140 141 2.970324 GCCGTCGCCAAAGTCACA 60.970 61.111 0.00 0.00 0.00 3.58
141 142 4.072088 CGCCGTCGCCAAAGTCAC 62.072 66.667 0.00 0.00 0.00 3.67
159 160 1.511887 CTTTGATTGCCGCGAACCG 60.512 57.895 8.23 0.00 0.00 4.44
160 161 1.801512 GCTTTGATTGCCGCGAACC 60.802 57.895 8.23 0.00 0.00 3.62
161 162 0.662970 TTGCTTTGATTGCCGCGAAC 60.663 50.000 8.23 0.00 0.00 3.95
162 163 0.031314 TTTGCTTTGATTGCCGCGAA 59.969 45.000 8.23 0.00 0.00 4.70
163 164 0.387112 CTTTGCTTTGATTGCCGCGA 60.387 50.000 8.23 0.00 0.00 5.87
164 165 0.387112 TCTTTGCTTTGATTGCCGCG 60.387 50.000 0.00 0.00 0.00 6.46
165 166 1.782044 TTCTTTGCTTTGATTGCCGC 58.218 45.000 0.00 0.00 0.00 6.53
166 167 4.792528 TTTTTCTTTGCTTTGATTGCCG 57.207 36.364 0.00 0.00 0.00 5.69
167 168 8.031848 TCATATTTTTCTTTGCTTTGATTGCC 57.968 30.769 0.00 0.00 0.00 4.52
171 172 9.947433 TGGAATCATATTTTTCTTTGCTTTGAT 57.053 25.926 0.00 0.00 0.00 2.57
172 173 9.775854 TTGGAATCATATTTTTCTTTGCTTTGA 57.224 25.926 0.00 0.00 0.00 2.69
174 175 9.783081 ACTTGGAATCATATTTTTCTTTGCTTT 57.217 25.926 0.00 0.00 0.00 3.51
175 176 9.783081 AACTTGGAATCATATTTTTCTTTGCTT 57.217 25.926 0.00 0.00 0.00 3.91
176 177 9.783081 AAACTTGGAATCATATTTTTCTTTGCT 57.217 25.926 0.00 0.00 0.00 3.91
201 202 9.719279 CGGTCTTTTGTATGTAAGTTAAACAAA 57.281 29.630 12.17 12.17 38.04 2.83
202 203 8.344098 CCGGTCTTTTGTATGTAAGTTAAACAA 58.656 33.333 0.00 3.72 0.00 2.83
203 204 7.498570 ACCGGTCTTTTGTATGTAAGTTAAACA 59.501 33.333 0.00 0.00 0.00 2.83
204 205 7.864686 ACCGGTCTTTTGTATGTAAGTTAAAC 58.135 34.615 0.00 0.00 0.00 2.01
205 206 9.553064 TTACCGGTCTTTTGTATGTAAGTTAAA 57.447 29.630 12.40 0.00 0.00 1.52
206 207 9.553064 TTTACCGGTCTTTTGTATGTAAGTTAA 57.447 29.630 12.40 0.00 0.00 2.01
207 208 9.553064 TTTTACCGGTCTTTTGTATGTAAGTTA 57.447 29.630 12.40 0.00 0.00 2.24
208 209 8.449251 TTTTACCGGTCTTTTGTATGTAAGTT 57.551 30.769 12.40 0.00 0.00 2.66
209 210 8.449251 TTTTTACCGGTCTTTTGTATGTAAGT 57.551 30.769 12.40 0.00 0.00 2.24
210 211 8.019094 CCTTTTTACCGGTCTTTTGTATGTAAG 58.981 37.037 12.40 0.40 0.00 2.34
211 212 7.718753 TCCTTTTTACCGGTCTTTTGTATGTAA 59.281 33.333 12.40 0.00 0.00 2.41
212 213 7.222872 TCCTTTTTACCGGTCTTTTGTATGTA 58.777 34.615 12.40 0.00 0.00 2.29
213 214 6.063404 TCCTTTTTACCGGTCTTTTGTATGT 58.937 36.000 12.40 0.00 0.00 2.29
214 215 6.563222 TCCTTTTTACCGGTCTTTTGTATG 57.437 37.500 12.40 0.00 0.00 2.39
215 216 7.066645 GCTATCCTTTTTACCGGTCTTTTGTAT 59.933 37.037 12.40 1.36 0.00 2.29
216 217 6.372381 GCTATCCTTTTTACCGGTCTTTTGTA 59.628 38.462 12.40 0.00 0.00 2.41
217 218 5.182570 GCTATCCTTTTTACCGGTCTTTTGT 59.817 40.000 12.40 0.00 0.00 2.83
218 219 5.414765 AGCTATCCTTTTTACCGGTCTTTTG 59.585 40.000 12.40 0.00 0.00 2.44
219 220 5.567430 AGCTATCCTTTTTACCGGTCTTTT 58.433 37.500 12.40 0.00 0.00 2.27
220 221 5.175388 AGCTATCCTTTTTACCGGTCTTT 57.825 39.130 12.40 0.00 0.00 2.52
221 222 4.838904 AGCTATCCTTTTTACCGGTCTT 57.161 40.909 12.40 0.00 0.00 3.01
222 223 4.838904 AAGCTATCCTTTTTACCGGTCT 57.161 40.909 12.40 0.00 0.00 3.85
223 224 4.438336 GCAAAGCTATCCTTTTTACCGGTC 60.438 45.833 12.40 0.00 41.75 4.79
224 225 3.442625 GCAAAGCTATCCTTTTTACCGGT 59.557 43.478 13.98 13.98 41.75 5.28
225 226 3.442273 TGCAAAGCTATCCTTTTTACCGG 59.558 43.478 0.00 0.00 41.75 5.28
226 227 4.695217 TGCAAAGCTATCCTTTTTACCG 57.305 40.909 0.00 0.00 41.75 4.02
227 228 6.207691 TCATGCAAAGCTATCCTTTTTACC 57.792 37.500 0.00 0.00 41.75 2.85
228 229 9.617975 GATATCATGCAAAGCTATCCTTTTTAC 57.382 33.333 0.00 0.00 41.75 2.01
229 230 8.506437 CGATATCATGCAAAGCTATCCTTTTTA 58.494 33.333 3.12 0.00 41.75 1.52
230 231 7.365741 CGATATCATGCAAAGCTATCCTTTTT 58.634 34.615 3.12 0.00 41.75 1.94
231 232 6.072286 CCGATATCATGCAAAGCTATCCTTTT 60.072 38.462 3.12 0.00 41.75 2.27
232 233 5.413833 CCGATATCATGCAAAGCTATCCTTT 59.586 40.000 3.12 0.00 44.45 3.11
233 234 4.940046 CCGATATCATGCAAAGCTATCCTT 59.060 41.667 3.12 0.00 34.51 3.36
234 235 4.223700 TCCGATATCATGCAAAGCTATCCT 59.776 41.667 3.12 0.00 0.00 3.24
235 236 4.507710 TCCGATATCATGCAAAGCTATCC 58.492 43.478 3.12 0.00 0.00 2.59
236 237 5.414360 TCTCCGATATCATGCAAAGCTATC 58.586 41.667 3.12 0.00 0.00 2.08
237 238 5.411831 TCTCCGATATCATGCAAAGCTAT 57.588 39.130 3.12 0.00 0.00 2.97
238 239 4.871933 TCTCCGATATCATGCAAAGCTA 57.128 40.909 3.12 0.00 0.00 3.32
239 240 3.758755 TCTCCGATATCATGCAAAGCT 57.241 42.857 3.12 0.00 0.00 3.74
240 241 3.363378 CGTTCTCCGATATCATGCAAAGC 60.363 47.826 3.12 0.00 39.56 3.51
241 242 3.804325 ACGTTCTCCGATATCATGCAAAG 59.196 43.478 3.12 0.00 40.70 2.77
242 243 3.792401 ACGTTCTCCGATATCATGCAAA 58.208 40.909 3.12 0.00 40.70 3.68
243 244 3.452755 ACGTTCTCCGATATCATGCAA 57.547 42.857 3.12 0.00 40.70 4.08
244 245 4.577834 TTACGTTCTCCGATATCATGCA 57.422 40.909 3.12 0.00 40.70 3.96
245 246 4.743151 TGTTTACGTTCTCCGATATCATGC 59.257 41.667 3.12 0.00 40.70 4.06
246 247 8.515473 TTATGTTTACGTTCTCCGATATCATG 57.485 34.615 3.12 0.00 40.70 3.07
247 248 9.537192 TTTTATGTTTACGTTCTCCGATATCAT 57.463 29.630 3.12 0.00 40.70 2.45
248 249 8.929827 TTTTATGTTTACGTTCTCCGATATCA 57.070 30.769 3.12 0.00 40.70 2.15
252 253 8.823818 CCTATTTTTATGTTTACGTTCTCCGAT 58.176 33.333 0.00 0.00 40.70 4.18
253 254 7.818930 ACCTATTTTTATGTTTACGTTCTCCGA 59.181 33.333 0.00 0.00 40.70 4.55
254 255 7.901377 CACCTATTTTTATGTTTACGTTCTCCG 59.099 37.037 0.00 0.00 44.03 4.63
255 256 8.938906 TCACCTATTTTTATGTTTACGTTCTCC 58.061 33.333 0.00 0.00 0.00 3.71
258 259 9.006215 GCATCACCTATTTTTATGTTTACGTTC 57.994 33.333 0.00 0.00 0.00 3.95
259 260 7.971722 GGCATCACCTATTTTTATGTTTACGTT 59.028 33.333 0.00 0.00 34.51 3.99
260 261 7.477494 GGCATCACCTATTTTTATGTTTACGT 58.523 34.615 0.00 0.00 34.51 3.57
261 262 7.908193 GGCATCACCTATTTTTATGTTTACG 57.092 36.000 0.00 0.00 34.51 3.18
277 278 2.618709 GTGGTTAATAGCAGGCATCACC 59.381 50.000 0.00 0.00 39.61 4.02
278 279 2.287915 CGTGGTTAATAGCAGGCATCAC 59.712 50.000 0.00 0.00 31.87 3.06
279 280 2.560504 CGTGGTTAATAGCAGGCATCA 58.439 47.619 0.00 0.00 31.87 3.07
284 285 0.180406 AGGGCGTGGTTAATAGCAGG 59.820 55.000 0.00 0.00 39.84 4.85
285 286 1.299541 CAGGGCGTGGTTAATAGCAG 58.700 55.000 0.00 0.00 31.28 4.24
286 287 0.107410 CCAGGGCGTGGTTAATAGCA 60.107 55.000 17.92 0.00 42.17 3.49
287 288 2.702847 CCAGGGCGTGGTTAATAGC 58.297 57.895 17.92 0.00 42.17 2.97
296 297 2.358737 GGAAGACACCAGGGCGTG 60.359 66.667 0.00 0.00 39.75 5.34
297 298 4.003788 CGGAAGACACCAGGGCGT 62.004 66.667 0.00 0.00 0.00 5.68
298 299 4.003788 ACGGAAGACACCAGGGCG 62.004 66.667 0.00 0.00 0.00 6.13
299 300 2.358737 CACGGAAGACACCAGGGC 60.359 66.667 0.00 0.00 0.00 5.19
300 301 2.358737 GCACGGAAGACACCAGGG 60.359 66.667 0.00 0.00 0.00 4.45
301 302 2.738521 CGCACGGAAGACACCAGG 60.739 66.667 0.00 0.00 0.00 4.45
302 303 2.022129 GACGCACGGAAGACACCAG 61.022 63.158 0.00 0.00 0.00 4.00
303 304 2.028484 GACGCACGGAAGACACCA 59.972 61.111 0.00 0.00 0.00 4.17
304 305 3.103911 CGACGCACGGAAGACACC 61.104 66.667 0.00 0.00 38.46 4.16
305 306 2.050714 TCGACGCACGGAAGACAC 60.051 61.111 3.02 0.00 42.82 3.67
306 307 2.050714 GTCGACGCACGGAAGACA 60.051 61.111 0.00 0.00 42.82 3.41
307 308 1.796749 GAGTCGACGCACGGAAGAC 60.797 63.158 14.83 1.16 42.82 3.01
308 309 2.559840 GAGTCGACGCACGGAAGA 59.440 61.111 14.83 0.00 42.82 2.87
309 310 2.870161 CGAGTCGACGCACGGAAG 60.870 66.667 19.45 0.00 42.82 3.46
317 318 3.013990 GCGATCAGCGAGTCGACG 61.014 66.667 18.61 13.32 44.57 5.12
327 328 3.525059 GAGTCTGTCGAGCGATCAG 57.475 57.895 0.00 12.83 0.00 2.90
340 341 0.681564 CAGGGACAGGCTACGAGTCT 60.682 60.000 0.00 0.00 32.98 3.24
341 342 1.668101 CCAGGGACAGGCTACGAGTC 61.668 65.000 0.00 0.00 0.00 3.36
342 343 1.682684 CCAGGGACAGGCTACGAGT 60.683 63.158 0.00 0.00 0.00 4.18
343 344 1.682684 ACCAGGGACAGGCTACGAG 60.683 63.158 0.00 0.00 39.28 4.18
344 345 1.982395 CACCAGGGACAGGCTACGA 60.982 63.158 0.00 0.00 39.28 3.43
345 346 2.579201 CACCAGGGACAGGCTACG 59.421 66.667 0.00 0.00 39.28 3.51
346 347 2.990479 CCACCAGGGACAGGCTAC 59.010 66.667 0.00 0.00 39.28 3.58
347 348 3.009115 GCCACCAGGGACAGGCTA 61.009 66.667 11.85 0.00 43.70 3.93
350 351 0.469892 AAAAAGCCACCAGGGACAGG 60.470 55.000 0.00 0.00 42.48 4.00
351 352 0.961753 GAAAAAGCCACCAGGGACAG 59.038 55.000 0.00 0.00 40.01 3.51
352 353 0.555769 AGAAAAAGCCACCAGGGACA 59.444 50.000 0.00 0.00 40.01 4.02
353 354 0.961753 CAGAAAAAGCCACCAGGGAC 59.038 55.000 0.00 0.00 40.01 4.46
354 355 0.555769 ACAGAAAAAGCCACCAGGGA 59.444 50.000 0.00 0.00 40.01 4.20
355 356 1.413118 AACAGAAAAAGCCACCAGGG 58.587 50.000 0.00 0.00 40.85 4.45
356 357 2.224042 GGAAACAGAAAAAGCCACCAGG 60.224 50.000 0.00 0.00 38.23 4.45
357 358 2.695147 AGGAAACAGAAAAAGCCACCAG 59.305 45.455 0.00 0.00 0.00 4.00
358 359 2.693074 GAGGAAACAGAAAAAGCCACCA 59.307 45.455 0.00 0.00 0.00 4.17
359 360 2.959030 AGAGGAAACAGAAAAAGCCACC 59.041 45.455 0.00 0.00 0.00 4.61
360 361 4.655762 AAGAGGAAACAGAAAAAGCCAC 57.344 40.909 0.00 0.00 0.00 5.01
361 362 5.445964 ACTAAGAGGAAACAGAAAAAGCCA 58.554 37.500 0.00 0.00 0.00 4.75
362 363 6.392625 AACTAAGAGGAAACAGAAAAAGCC 57.607 37.500 0.00 0.00 0.00 4.35
363 364 7.708051 AGAAACTAAGAGGAAACAGAAAAAGC 58.292 34.615 0.00 0.00 0.00 3.51
365 366 9.855021 CAAAGAAACTAAGAGGAAACAGAAAAA 57.145 29.630 0.00 0.00 0.00 1.94
366 367 8.466798 CCAAAGAAACTAAGAGGAAACAGAAAA 58.533 33.333 0.00 0.00 0.00 2.29
367 368 7.068226 CCCAAAGAAACTAAGAGGAAACAGAAA 59.932 37.037 0.00 0.00 0.00 2.52
368 369 6.546034 CCCAAAGAAACTAAGAGGAAACAGAA 59.454 38.462 0.00 0.00 0.00 3.02
369 370 6.062095 CCCAAAGAAACTAAGAGGAAACAGA 58.938 40.000 0.00 0.00 0.00 3.41
370 371 5.278512 GCCCAAAGAAACTAAGAGGAAACAG 60.279 44.000 0.00 0.00 0.00 3.16
371 372 4.583073 GCCCAAAGAAACTAAGAGGAAACA 59.417 41.667 0.00 0.00 0.00 2.83
372 373 4.583073 TGCCCAAAGAAACTAAGAGGAAAC 59.417 41.667 0.00 0.00 0.00 2.78
373 374 4.798882 TGCCCAAAGAAACTAAGAGGAAA 58.201 39.130 0.00 0.00 0.00 3.13
374 375 4.447138 TGCCCAAAGAAACTAAGAGGAA 57.553 40.909 0.00 0.00 0.00 3.36
375 376 4.042809 TGATGCCCAAAGAAACTAAGAGGA 59.957 41.667 0.00 0.00 0.00 3.71
376 377 4.335416 TGATGCCCAAAGAAACTAAGAGG 58.665 43.478 0.00 0.00 0.00 3.69
377 378 6.071728 ACAATGATGCCCAAAGAAACTAAGAG 60.072 38.462 0.00 0.00 0.00 2.85
378 379 5.774690 ACAATGATGCCCAAAGAAACTAAGA 59.225 36.000 0.00 0.00 0.00 2.10
379 380 5.865552 CACAATGATGCCCAAAGAAACTAAG 59.134 40.000 0.00 0.00 0.00 2.18
380 381 5.782047 CACAATGATGCCCAAAGAAACTAA 58.218 37.500 0.00 0.00 0.00 2.24
381 382 4.321899 GCACAATGATGCCCAAAGAAACTA 60.322 41.667 0.00 0.00 39.86 2.24
382 383 3.555586 GCACAATGATGCCCAAAGAAACT 60.556 43.478 0.00 0.00 39.86 2.66
383 384 2.738314 GCACAATGATGCCCAAAGAAAC 59.262 45.455 0.00 0.00 39.86 2.78
384 385 3.042871 GCACAATGATGCCCAAAGAAA 57.957 42.857 0.00 0.00 39.86 2.52
385 386 2.747396 GCACAATGATGCCCAAAGAA 57.253 45.000 0.00 0.00 39.86 2.52
393 394 1.153706 GGCCACAGCACAATGATGC 60.154 57.895 0.00 0.00 46.50 3.91
394 395 1.514087 GGGCCACAGCACAATGATG 59.486 57.895 4.39 0.00 44.19 3.07
395 396 4.023137 GGGCCACAGCACAATGAT 57.977 55.556 4.39 0.00 44.19 2.45
402 403 4.531426 AAAACGGGGGCCACAGCA 62.531 61.111 7.65 0.00 42.56 4.41
403 404 3.230990 AAAAACGGGGGCCACAGC 61.231 61.111 7.65 0.00 38.76 4.40
419 420 4.940654 CCCAAGCAAGACCAAAAAGAAAAA 59.059 37.500 0.00 0.00 0.00 1.94
420 421 4.223923 TCCCAAGCAAGACCAAAAAGAAAA 59.776 37.500 0.00 0.00 0.00 2.29
421 422 3.772025 TCCCAAGCAAGACCAAAAAGAAA 59.228 39.130 0.00 0.00 0.00 2.52
422 423 3.132111 GTCCCAAGCAAGACCAAAAAGAA 59.868 43.478 0.00 0.00 0.00 2.52
423 424 2.693074 GTCCCAAGCAAGACCAAAAAGA 59.307 45.455 0.00 0.00 0.00 2.52
424 425 2.543653 CGTCCCAAGCAAGACCAAAAAG 60.544 50.000 0.00 0.00 0.00 2.27
425 426 1.407258 CGTCCCAAGCAAGACCAAAAA 59.593 47.619 0.00 0.00 0.00 1.94
426 427 1.028905 CGTCCCAAGCAAGACCAAAA 58.971 50.000 0.00 0.00 0.00 2.44
427 428 0.106918 ACGTCCCAAGCAAGACCAAA 60.107 50.000 0.00 0.00 0.00 3.28
428 429 0.817634 CACGTCCCAAGCAAGACCAA 60.818 55.000 0.00 0.00 0.00 3.67
429 430 1.227823 CACGTCCCAAGCAAGACCA 60.228 57.895 0.00 0.00 0.00 4.02
430 431 1.966451 CCACGTCCCAAGCAAGACC 60.966 63.158 0.00 0.00 0.00 3.85
431 432 0.818040 AACCACGTCCCAAGCAAGAC 60.818 55.000 0.00 0.00 0.00 3.01
432 433 0.817634 CAACCACGTCCCAAGCAAGA 60.818 55.000 0.00 0.00 0.00 3.02
433 434 1.101049 ACAACCACGTCCCAAGCAAG 61.101 55.000 0.00 0.00 0.00 4.01
434 435 0.180642 TACAACCACGTCCCAAGCAA 59.819 50.000 0.00 0.00 0.00 3.91
435 436 0.398696 ATACAACCACGTCCCAAGCA 59.601 50.000 0.00 0.00 0.00 3.91
436 437 0.802494 CATACAACCACGTCCCAAGC 59.198 55.000 0.00 0.00 0.00 4.01
437 438 1.002659 TCCATACAACCACGTCCCAAG 59.997 52.381 0.00 0.00 0.00 3.61
438 439 1.002659 CTCCATACAACCACGTCCCAA 59.997 52.381 0.00 0.00 0.00 4.12
439 440 0.611200 CTCCATACAACCACGTCCCA 59.389 55.000 0.00 0.00 0.00 4.37
440 441 0.611714 ACTCCATACAACCACGTCCC 59.388 55.000 0.00 0.00 0.00 4.46
441 442 2.467566 AACTCCATACAACCACGTCC 57.532 50.000 0.00 0.00 0.00 4.79
442 443 5.899299 AGTATAACTCCATACAACCACGTC 58.101 41.667 0.00 0.00 34.42 4.34
443 444 5.927281 AGTATAACTCCATACAACCACGT 57.073 39.130 0.00 0.00 34.42 4.49
444 445 8.882415 ATAAAGTATAACTCCATACAACCACG 57.118 34.615 0.00 0.00 34.42 4.94
455 456 9.583765 CCCGCTTTATAGATAAAGTATAACTCC 57.416 37.037 18.65 4.02 46.78 3.85
458 459 9.070149 CGTCCCGCTTTATAGATAAAGTATAAC 57.930 37.037 18.65 12.83 46.78 1.89
459 460 9.013229 TCGTCCCGCTTTATAGATAAAGTATAA 57.987 33.333 18.65 5.19 46.78 0.98
460 461 8.565896 TCGTCCCGCTTTATAGATAAAGTATA 57.434 34.615 18.65 4.91 46.78 1.47
461 462 7.458409 TCGTCCCGCTTTATAGATAAAGTAT 57.542 36.000 18.65 0.00 46.78 2.12
462 463 6.882610 TCGTCCCGCTTTATAGATAAAGTA 57.117 37.500 18.65 4.92 46.78 2.24
463 464 5.779529 TCGTCCCGCTTTATAGATAAAGT 57.220 39.130 18.65 0.00 46.78 2.66
465 466 5.464389 GCTTTCGTCCCGCTTTATAGATAAA 59.536 40.000 0.00 0.00 0.00 1.40
466 467 4.986659 GCTTTCGTCCCGCTTTATAGATAA 59.013 41.667 0.00 0.00 0.00 1.75
467 468 4.553323 GCTTTCGTCCCGCTTTATAGATA 58.447 43.478 0.00 0.00 0.00 1.98
468 469 3.391049 GCTTTCGTCCCGCTTTATAGAT 58.609 45.455 0.00 0.00 0.00 1.98
469 470 2.482490 GGCTTTCGTCCCGCTTTATAGA 60.482 50.000 0.00 0.00 0.00 1.98
470 471 1.865340 GGCTTTCGTCCCGCTTTATAG 59.135 52.381 0.00 0.00 0.00 1.31
471 472 1.483415 AGGCTTTCGTCCCGCTTTATA 59.517 47.619 0.00 0.00 0.00 0.98
472 473 0.252197 AGGCTTTCGTCCCGCTTTAT 59.748 50.000 0.00 0.00 0.00 1.40
473 474 0.672401 CAGGCTTTCGTCCCGCTTTA 60.672 55.000 0.00 0.00 0.00 1.85
474 475 1.966451 CAGGCTTTCGTCCCGCTTT 60.966 57.895 0.00 0.00 0.00 3.51
475 476 2.358737 CAGGCTTTCGTCCCGCTT 60.359 61.111 0.00 0.00 0.00 4.68
476 477 2.676163 AAACAGGCTTTCGTCCCGCT 62.676 55.000 0.00 0.00 0.00 5.52
477 478 2.183858 GAAACAGGCTTTCGTCCCGC 62.184 60.000 0.00 0.00 0.00 6.13
478 479 1.866925 GAAACAGGCTTTCGTCCCG 59.133 57.895 0.00 0.00 0.00 5.14
479 480 1.574702 CCGAAACAGGCTTTCGTCCC 61.575 60.000 17.30 0.00 46.85 4.46
480 481 0.601841 TCCGAAACAGGCTTTCGTCC 60.602 55.000 17.30 0.00 46.85 4.79
481 482 1.439679 ATCCGAAACAGGCTTTCGTC 58.560 50.000 17.30 0.00 46.85 4.20
482 483 2.754946 TATCCGAAACAGGCTTTCGT 57.245 45.000 17.30 5.45 46.85 3.85
484 485 5.119694 AGAGATTATCCGAAACAGGCTTTC 58.880 41.667 0.00 0.00 0.00 2.62
485 486 5.104259 AGAGATTATCCGAAACAGGCTTT 57.896 39.130 0.00 0.00 0.00 3.51
486 487 4.762289 AGAGATTATCCGAAACAGGCTT 57.238 40.909 0.00 0.00 0.00 4.35
487 488 4.762289 AAGAGATTATCCGAAACAGGCT 57.238 40.909 0.00 0.00 0.00 4.58
488 489 4.496507 GCAAAGAGATTATCCGAAACAGGC 60.497 45.833 0.00 0.00 0.00 4.85
489 490 4.635765 TGCAAAGAGATTATCCGAAACAGG 59.364 41.667 0.00 0.00 0.00 4.00
490 491 5.352569 AGTGCAAAGAGATTATCCGAAACAG 59.647 40.000 0.00 0.00 0.00 3.16
491 492 5.245531 AGTGCAAAGAGATTATCCGAAACA 58.754 37.500 0.00 0.00 0.00 2.83
492 493 5.803020 AGTGCAAAGAGATTATCCGAAAC 57.197 39.130 0.00 0.00 0.00 2.78
493 494 6.403049 TGTAGTGCAAAGAGATTATCCGAAA 58.597 36.000 0.00 0.00 0.00 3.46
494 495 5.972935 TGTAGTGCAAAGAGATTATCCGAA 58.027 37.500 0.00 0.00 0.00 4.30
495 496 5.592104 TGTAGTGCAAAGAGATTATCCGA 57.408 39.130 0.00 0.00 0.00 4.55
496 497 6.662414 TTTGTAGTGCAAAGAGATTATCCG 57.338 37.500 1.88 0.00 41.68 4.18
502 503 9.899226 GAAGTTATTTTTGTAGTGCAAAGAGAT 57.101 29.630 6.49 5.75 46.40 2.75
503 504 8.349983 GGAAGTTATTTTTGTAGTGCAAAGAGA 58.650 33.333 6.49 0.00 46.40 3.10
504 505 8.134895 TGGAAGTTATTTTTGTAGTGCAAAGAG 58.865 33.333 6.49 0.00 46.40 2.85
505 506 8.001881 TGGAAGTTATTTTTGTAGTGCAAAGA 57.998 30.769 6.49 3.02 46.40 2.52
506 507 8.641499 TTGGAAGTTATTTTTGTAGTGCAAAG 57.359 30.769 6.49 0.00 46.40 2.77
507 508 8.254508 ACTTGGAAGTTATTTTTGTAGTGCAAA 58.745 29.630 1.88 1.88 39.60 3.68
508 509 7.777095 ACTTGGAAGTTATTTTTGTAGTGCAA 58.223 30.769 0.00 0.00 35.21 4.08
509 510 7.341445 ACTTGGAAGTTATTTTTGTAGTGCA 57.659 32.000 0.00 0.00 35.21 4.57
524 525 5.437060 TGCTAACTGAAGAAACTTGGAAGT 58.563 37.500 0.00 0.00 42.04 3.01
525 526 5.529060 ACTGCTAACTGAAGAAACTTGGAAG 59.471 40.000 0.00 0.00 0.00 3.46
526 527 5.296780 CACTGCTAACTGAAGAAACTTGGAA 59.703 40.000 0.00 0.00 0.00 3.53
527 528 4.816385 CACTGCTAACTGAAGAAACTTGGA 59.184 41.667 0.00 0.00 0.00 3.53
528 529 4.576463 ACACTGCTAACTGAAGAAACTTGG 59.424 41.667 0.00 0.00 0.00 3.61
529 530 5.505286 CACACTGCTAACTGAAGAAACTTG 58.495 41.667 0.00 0.00 0.00 3.16
530 531 4.035675 GCACACTGCTAACTGAAGAAACTT 59.964 41.667 0.00 0.00 40.96 2.66
531 532 3.561725 GCACACTGCTAACTGAAGAAACT 59.438 43.478 0.00 0.00 40.96 2.66
532 533 3.878245 GCACACTGCTAACTGAAGAAAC 58.122 45.455 0.00 0.00 40.96 2.78
552 553 7.377928 GTGATTATATTCTCACATGCACAAAGC 59.622 37.037 10.77 0.00 41.13 3.51
553 554 7.585210 CGTGATTATATTCTCACATGCACAAAG 59.415 37.037 14.26 0.00 41.46 2.77
554 555 7.065683 ACGTGATTATATTCTCACATGCACAAA 59.934 33.333 14.26 0.00 41.46 2.83
555 556 6.538381 ACGTGATTATATTCTCACATGCACAA 59.462 34.615 14.26 0.00 41.46 3.33
556 557 6.048509 ACGTGATTATATTCTCACATGCACA 58.951 36.000 14.26 0.00 41.46 4.57
557 558 6.530913 ACGTGATTATATTCTCACATGCAC 57.469 37.500 14.26 0.00 41.46 4.57
558 559 7.552458 AAACGTGATTATATTCTCACATGCA 57.448 32.000 14.26 0.00 41.46 3.96
559 560 7.742089 GCTAAACGTGATTATATTCTCACATGC 59.258 37.037 14.26 8.47 41.46 4.06
560 561 8.982685 AGCTAAACGTGATTATATTCTCACATG 58.017 33.333 14.26 0.00 41.46 3.21
561 562 8.982685 CAGCTAAACGTGATTATATTCTCACAT 58.017 33.333 14.26 0.79 41.46 3.21
562 563 7.042725 GCAGCTAAACGTGATTATATTCTCACA 60.043 37.037 14.26 0.00 41.46 3.58
563 564 7.284351 GCAGCTAAACGTGATTATATTCTCAC 58.716 38.462 0.00 7.10 38.69 3.51
564 565 6.423905 GGCAGCTAAACGTGATTATATTCTCA 59.576 38.462 0.00 0.00 0.00 3.27
565 566 6.128526 GGGCAGCTAAACGTGATTATATTCTC 60.129 42.308 0.00 0.00 0.00 2.87
566 567 5.701290 GGGCAGCTAAACGTGATTATATTCT 59.299 40.000 0.00 0.00 0.00 2.40
567 568 5.389516 CGGGCAGCTAAACGTGATTATATTC 60.390 44.000 0.00 0.00 0.00 1.75
568 569 4.451096 CGGGCAGCTAAACGTGATTATATT 59.549 41.667 0.00 0.00 0.00 1.28
569 570 3.994392 CGGGCAGCTAAACGTGATTATAT 59.006 43.478 0.00 0.00 0.00 0.86
570 571 3.181473 ACGGGCAGCTAAACGTGATTATA 60.181 43.478 7.79 0.00 38.24 0.98
571 572 2.210116 CGGGCAGCTAAACGTGATTAT 58.790 47.619 0.00 0.00 0.00 1.28
572 573 1.066716 ACGGGCAGCTAAACGTGATTA 60.067 47.619 7.79 0.00 38.24 1.75
573 574 0.321298 ACGGGCAGCTAAACGTGATT 60.321 50.000 7.79 0.00 38.24 2.57
574 575 1.295423 ACGGGCAGCTAAACGTGAT 59.705 52.632 7.79 0.00 38.24 3.06
575 576 2.738480 ACGGGCAGCTAAACGTGA 59.262 55.556 7.79 0.00 38.24 4.35
577 578 0.321298 AATCACGGGCAGCTAAACGT 60.321 50.000 3.30 3.30 40.60 3.99
578 579 0.802494 AAATCACGGGCAGCTAAACG 59.198 50.000 0.00 0.00 0.00 3.60
579 580 1.132453 GGAAATCACGGGCAGCTAAAC 59.868 52.381 0.00 0.00 0.00 2.01
580 581 1.459450 GGAAATCACGGGCAGCTAAA 58.541 50.000 0.00 0.00 0.00 1.85
581 582 0.742990 CGGAAATCACGGGCAGCTAA 60.743 55.000 0.00 0.00 0.00 3.09
582 583 1.153449 CGGAAATCACGGGCAGCTA 60.153 57.895 0.00 0.00 0.00 3.32
583 584 2.436646 CGGAAATCACGGGCAGCT 60.437 61.111 0.00 0.00 0.00 4.24
590 591 1.455786 GATATGCGTCCGGAAATCACG 59.544 52.381 5.23 7.06 36.60 4.35
591 592 1.798813 GGATATGCGTCCGGAAATCAC 59.201 52.381 5.23 0.00 0.00 3.06
592 593 1.270625 GGGATATGCGTCCGGAAATCA 60.271 52.381 5.23 4.66 39.26 2.57
593 594 1.439679 GGGATATGCGTCCGGAAATC 58.560 55.000 5.23 4.61 39.26 2.17
594 595 0.320421 CGGGATATGCGTCCGGAAAT 60.320 55.000 5.23 2.88 40.07 2.17
595 596 1.068417 CGGGATATGCGTCCGGAAA 59.932 57.895 5.23 0.00 40.07 3.13
596 597 2.732016 CGGGATATGCGTCCGGAA 59.268 61.111 5.23 0.00 40.07 4.30
601 602 4.295119 ACGGCCGGGATATGCGTC 62.295 66.667 31.76 0.00 0.00 5.19
602 603 4.602259 CACGGCCGGGATATGCGT 62.602 66.667 31.76 0.57 0.00 5.24
603 604 4.293648 TCACGGCCGGGATATGCG 62.294 66.667 30.05 4.83 0.00 4.73
604 605 2.172483 ATCTCACGGCCGGGATATGC 62.172 60.000 33.80 0.00 0.00 3.14
605 606 0.321671 AATCTCACGGCCGGGATATG 59.678 55.000 33.80 20.43 0.00 1.78
606 607 1.056660 AAATCTCACGGCCGGGATAT 58.943 50.000 33.80 27.13 0.00 1.63
607 608 0.834612 AAAATCTCACGGCCGGGATA 59.165 50.000 33.80 25.94 0.00 2.59
608 609 0.034477 AAAAATCTCACGGCCGGGAT 60.034 50.000 33.80 25.18 0.00 3.85
609 610 1.377229 AAAAATCTCACGGCCGGGA 59.623 52.632 31.48 31.48 0.00 5.14
610 611 3.996614 AAAAATCTCACGGCCGGG 58.003 55.556 31.76 28.69 0.00 5.73
625 626 5.216648 GCCAAGATACGTAGCAAACAAAAA 58.783 37.500 14.09 0.00 0.00 1.94
626 627 4.611807 CGCCAAGATACGTAGCAAACAAAA 60.612 41.667 14.09 0.00 0.00 2.44
627 628 3.120477 CGCCAAGATACGTAGCAAACAAA 60.120 43.478 14.09 0.00 0.00 2.83
628 629 2.413796 CGCCAAGATACGTAGCAAACAA 59.586 45.455 14.09 0.00 0.00 2.83
629 630 1.996898 CGCCAAGATACGTAGCAAACA 59.003 47.619 14.09 0.00 0.00 2.83
630 631 1.326548 CCGCCAAGATACGTAGCAAAC 59.673 52.381 14.09 0.00 0.00 2.93
633 634 0.179121 CACCGCCAAGATACGTAGCA 60.179 55.000 14.09 0.00 0.00 3.49
639 640 2.890808 TCATCTCACCGCCAAGATAC 57.109 50.000 0.00 0.00 31.10 2.24
645 646 0.389817 CGTCTTTCATCTCACCGCCA 60.390 55.000 0.00 0.00 0.00 5.69
824 2441 1.067582 CAGTACCGGCGATTCCTCC 59.932 63.158 9.30 0.00 0.00 4.30
825 2442 1.067582 CCAGTACCGGCGATTCCTC 59.932 63.158 9.30 0.00 0.00 3.71
826 2443 2.432300 CCCAGTACCGGCGATTCCT 61.432 63.158 9.30 0.00 0.00 3.36
945 2563 2.529151 CAATGTTGCGATTGCCTTACC 58.471 47.619 1.50 0.00 41.78 2.85
985 2603 3.569250 TTATCGAAGCAAAGGCAAACC 57.431 42.857 0.00 0.00 44.61 3.27
1049 2671 4.373116 GGGCTCGGCGACAAGACA 62.373 66.667 4.99 0.00 0.00 3.41
1068 2690 6.857848 AGAGAGAGAGAGAGAGAGAGATAGA 58.142 44.000 0.00 0.00 0.00 1.98
1069 2691 6.947733 AGAGAGAGAGAGAGAGAGAGAGATAG 59.052 46.154 0.00 0.00 0.00 2.08
1070 2692 6.857848 AGAGAGAGAGAGAGAGAGAGAGATA 58.142 44.000 0.00 0.00 0.00 1.98
1071 2693 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
1072 2694 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1073 2695 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1074 2696 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1075 2697 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1076 2698 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1077 2699 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1078 2700 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1079 2701 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1080 2702 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1081 2703 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1082 2704 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1083 2705 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1084 2706 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1085 2707 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1086 2708 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
1087 2709 5.867903 AAGAGAGAGAGAGAGAGAGAGAG 57.132 47.826 0.00 0.00 0.00 3.20
1088 2710 5.303078 GCTAAGAGAGAGAGAGAGAGAGAGA 59.697 48.000 0.00 0.00 0.00 3.10
1089 2711 5.510520 GGCTAAGAGAGAGAGAGAGAGAGAG 60.511 52.000 0.00 0.00 0.00 3.20
1090 2712 4.345257 GGCTAAGAGAGAGAGAGAGAGAGA 59.655 50.000 0.00 0.00 0.00 3.10
1091 2713 4.346418 AGGCTAAGAGAGAGAGAGAGAGAG 59.654 50.000 0.00 0.00 0.00 3.20
1092 2714 4.101585 CAGGCTAAGAGAGAGAGAGAGAGA 59.898 50.000 0.00 0.00 0.00 3.10
1093 2715 4.384056 CAGGCTAAGAGAGAGAGAGAGAG 58.616 52.174 0.00 0.00 0.00 3.20
1219 2841 0.827089 TCCCGTACACCTCGTTCCAA 60.827 55.000 0.00 0.00 0.00 3.53
1310 2932 1.742324 CTCCTCATAGCGGCTCTGCA 61.742 60.000 5.39 0.00 37.31 4.41
1344 2978 2.032071 AAACTCGGCCAGAACGGG 59.968 61.111 2.24 0.00 37.94 5.28
1631 3265 7.255491 TCATGGAGATTGAAAAAGATGATCG 57.745 36.000 0.00 0.00 0.00 3.69
1646 3280 5.415077 CAGCAGAAAAAGTCTTCATGGAGAT 59.585 40.000 7.06 0.00 32.70 2.75
1647 3281 4.758674 CAGCAGAAAAAGTCTTCATGGAGA 59.241 41.667 0.00 0.00 32.70 3.71
1675 3309 1.002868 GCTTGAAGCAGGGAGAGCA 60.003 57.895 13.09 0.00 41.89 4.26
1676 3310 1.748500 GGCTTGAAGCAGGGAGAGC 60.749 63.158 19.89 0.00 44.75 4.09
1779 3413 6.030379 CAGATCAAGATACGTCTGCTTTTC 57.970 41.667 0.00 0.00 34.13 2.29
1820 3455 1.181786 AAACAGAGAGAGAGAGGCCG 58.818 55.000 0.00 0.00 0.00 6.13
1824 3459 7.656948 ACATCAAAGAAAAACAGAGAGAGAGAG 59.343 37.037 0.00 0.00 0.00 3.20
1825 3460 7.504403 ACATCAAAGAAAAACAGAGAGAGAGA 58.496 34.615 0.00 0.00 0.00 3.10
2090 3801 4.755266 TTCTCAGGAATAAGTACCCTGC 57.245 45.455 9.55 0.00 45.29 4.85
2350 4066 5.205056 ACTGGAAACAAATTTGTCCTGGTA 58.795 37.500 26.07 13.07 41.31 3.25
2353 4069 7.307337 GCATTAACTGGAAACAAATTTGTCCTG 60.307 37.037 23.47 23.35 41.31 3.86
2384 4100 8.050778 TGTAAAGCCATAGTTTCACCTATTTG 57.949 34.615 0.00 0.00 0.00 2.32
2431 4147 2.019984 CAAAGGCCATAGCTCCACTTC 58.980 52.381 5.01 0.00 39.73 3.01
2432 4148 1.341383 CCAAAGGCCATAGCTCCACTT 60.341 52.381 5.01 0.00 39.73 3.16
2433 4149 0.257039 CCAAAGGCCATAGCTCCACT 59.743 55.000 5.01 0.00 39.73 4.00
2434 4150 0.255890 TCCAAAGGCCATAGCTCCAC 59.744 55.000 5.01 0.00 39.73 4.02
2491 4207 7.792364 ATTATCTGGTATGGAACTCGGAATA 57.208 36.000 0.00 0.00 0.00 1.75
2492 4208 6.688073 ATTATCTGGTATGGAACTCGGAAT 57.312 37.500 0.00 0.00 0.00 3.01
2494 4210 7.256190 CCTTAATTATCTGGTATGGAACTCGGA 60.256 40.741 0.00 0.00 0.00 4.55
2495 4211 6.874134 CCTTAATTATCTGGTATGGAACTCGG 59.126 42.308 0.00 0.00 0.00 4.63
2496 4212 7.442656 ACCTTAATTATCTGGTATGGAACTCG 58.557 38.462 4.21 0.00 0.00 4.18
2579 4299 4.346734 CATGACTACTCGCATGCTTTTT 57.653 40.909 17.13 0.00 35.93 1.94
2588 4308 2.285827 AGAACAGCATGACTACTCGC 57.714 50.000 0.00 0.00 39.69 5.03
2606 4326 7.174599 AGAGGTTCAATCTTGATTCTTGACAAG 59.825 37.037 9.03 9.03 43.03 3.16
2609 4329 7.446001 AAGAGGTTCAATCTTGATTCTTGAC 57.554 36.000 11.09 0.35 35.70 3.18
2653 4376 7.487829 TGTTTTTGTTTCTGCTTTGACTATGTC 59.512 33.333 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.