Multiple sequence alignment - TraesCS2B01G566400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G566400 chr2B 100.000 2252 0 0 1 2252 757395531 757393280 0.000000e+00 4159.0
1 TraesCS2B01G566400 chr2B 86.852 791 60 15 881 1653 757453243 757452479 0.000000e+00 845.0
2 TraesCS2B01G566400 chr2B 93.775 498 18 1 1755 2252 757433085 757432601 0.000000e+00 736.0
3 TraesCS2B01G566400 chr2B 78.394 884 130 40 731 1578 757567344 757566486 3.320000e-143 518.0
4 TraesCS2B01G566400 chr2B 78.235 850 115 45 732 1552 757241872 757241064 4.350000e-132 481.0
5 TraesCS2B01G566400 chr2B 89.096 376 28 3 882 1253 757433744 757433378 2.640000e-124 455.0
6 TraesCS2B01G566400 chr2B 80.741 540 74 17 762 1285 757016166 757015641 5.830000e-106 394.0
7 TraesCS2B01G566400 chr2B 91.289 287 23 1 1 287 757067756 757067472 7.540000e-105 390.0
8 TraesCS2B01G566400 chr2B 90.610 213 17 2 370 579 757454243 757454031 1.700000e-71 279.0
9 TraesCS2B01G566400 chr2B 88.304 171 15 3 591 761 757453538 757453373 1.360000e-47 200.0
10 TraesCS2B01G566400 chr2B 79.592 294 41 10 1365 1653 757015609 757015330 2.280000e-45 193.0
11 TraesCS2B01G566400 chr2D 88.956 996 71 20 1288 2252 610757139 610756152 0.000000e+00 1194.0
12 TraesCS2B01G566400 chr2D 78.442 937 131 48 727 1622 619312885 619311979 1.520000e-151 545.0
13 TraesCS2B01G566400 chr2D 87.936 373 20 9 881 1253 610757484 610757137 1.240000e-112 416.0
14 TraesCS2B01G566400 chr2D 84.000 100 9 4 790 883 610757611 610757513 3.080000e-14 89.8
15 TraesCS2B01G566400 chr2D 95.652 46 2 0 1664 1709 99658649 99658604 8.630000e-10 75.0
16 TraesCS2B01G566400 chr2D 95.652 46 2 0 1664 1709 102944130 102944085 8.630000e-10 75.0
17 TraesCS2B01G566400 chr2D 95.652 46 2 0 1664 1709 102955115 102955070 8.630000e-10 75.0
18 TraesCS2B01G566400 chr2D 95.652 46 2 0 1664 1709 103130015 103130060 8.630000e-10 75.0
19 TraesCS2B01G566400 chr2A 86.926 719 69 15 891 1601 750365518 750364817 0.000000e+00 784.0
20 TraesCS2B01G566400 chr2A 78.242 933 124 45 731 1615 750425414 750424513 1.980000e-145 525.0
21 TraesCS2B01G566400 chr2A 85.050 301 18 12 591 874 750365875 750365585 4.740000e-72 281.0
22 TraesCS2B01G566400 chr2A 76.978 278 37 9 613 876 750334902 750334638 1.400000e-27 134.0
23 TraesCS2B01G566400 chr2A 95.455 66 2 1 815 880 750334548 750334484 1.100000e-18 104.0
24 TraesCS2B01G566400 chr2A 86.022 93 10 3 446 537 750368857 750368767 1.840000e-16 97.1
25 TraesCS2B01G566400 chr7D 81.600 1000 96 45 596 1553 498285638 498284685 0.000000e+00 747.0
26 TraesCS2B01G566400 chr7D 80.451 532 62 25 753 1258 498252524 498252009 3.530000e-98 368.0
27 TraesCS2B01G566400 chrUn 79.903 413 53 21 762 1158 291048373 291047975 2.200000e-70 276.0
28 TraesCS2B01G566400 chr1B 87.861 173 17 2 1396 1568 121012013 121012181 1.360000e-47 200.0
29 TraesCS2B01G566400 chr1A 95.745 47 2 0 1664 1710 574488981 574489027 2.400000e-10 76.8
30 TraesCS2B01G566400 chr4D 95.652 46 2 0 1664 1709 326385088 326385043 8.630000e-10 75.0
31 TraesCS2B01G566400 chr3D 95.652 46 2 0 1664 1709 546254265 546254220 8.630000e-10 75.0
32 TraesCS2B01G566400 chr1D 95.652 46 2 0 1664 1709 298576306 298576261 8.630000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G566400 chr2B 757393280 757395531 2251 True 4159.000000 4159 100.000000 1 2252 1 chr2B.!!$R3 2251
1 TraesCS2B01G566400 chr2B 757432601 757433744 1143 True 595.500000 736 91.435500 882 2252 2 chr2B.!!$R6 1370
2 TraesCS2B01G566400 chr2B 757566486 757567344 858 True 518.000000 518 78.394000 731 1578 1 chr2B.!!$R4 847
3 TraesCS2B01G566400 chr2B 757241064 757241872 808 True 481.000000 481 78.235000 732 1552 1 chr2B.!!$R2 820
4 TraesCS2B01G566400 chr2B 757452479 757454243 1764 True 441.333333 845 88.588667 370 1653 3 chr2B.!!$R7 1283
5 TraesCS2B01G566400 chr2B 757015330 757016166 836 True 293.500000 394 80.166500 762 1653 2 chr2B.!!$R5 891
6 TraesCS2B01G566400 chr2D 610756152 610757611 1459 True 566.600000 1194 86.964000 790 2252 3 chr2D.!!$R5 1462
7 TraesCS2B01G566400 chr2D 619311979 619312885 906 True 545.000000 545 78.442000 727 1622 1 chr2D.!!$R4 895
8 TraesCS2B01G566400 chr2A 750424513 750425414 901 True 525.000000 525 78.242000 731 1615 1 chr2A.!!$R1 884
9 TraesCS2B01G566400 chr2A 750364817 750368857 4040 True 387.366667 784 85.999333 446 1601 3 chr2A.!!$R3 1155
10 TraesCS2B01G566400 chr7D 498284685 498285638 953 True 747.000000 747 81.600000 596 1553 1 chr7D.!!$R2 957
11 TraesCS2B01G566400 chr7D 498252009 498252524 515 True 368.000000 368 80.451000 753 1258 1 chr7D.!!$R1 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.105964 TCCCGACCTTGTGTTGTCTG 59.894 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 4843 0.035056 CCAATCCTGGAAGCGGTTCT 60.035 55.0 25.05 3.77 46.92 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.339547 CACCAACAATCCCGACCTT 57.660 52.632 0.00 0.00 0.00 3.50
19 20 0.881118 CACCAACAATCCCGACCTTG 59.119 55.000 0.00 0.00 0.00 3.61
20 21 0.476771 ACCAACAATCCCGACCTTGT 59.523 50.000 0.00 0.00 37.19 3.16
21 22 0.881118 CCAACAATCCCGACCTTGTG 59.119 55.000 0.00 0.00 35.82 3.33
22 23 1.604604 CAACAATCCCGACCTTGTGT 58.395 50.000 0.00 0.00 35.82 3.72
23 24 1.953686 CAACAATCCCGACCTTGTGTT 59.046 47.619 0.00 0.00 35.82 3.32
24 25 1.604604 ACAATCCCGACCTTGTGTTG 58.395 50.000 0.00 0.00 34.43 3.33
25 26 1.133915 ACAATCCCGACCTTGTGTTGT 60.134 47.619 0.00 0.00 34.43 3.32
26 27 1.535462 CAATCCCGACCTTGTGTTGTC 59.465 52.381 0.00 0.00 0.00 3.18
27 28 1.056660 ATCCCGACCTTGTGTTGTCT 58.943 50.000 0.00 0.00 0.00 3.41
28 29 0.105964 TCCCGACCTTGTGTTGTCTG 59.894 55.000 0.00 0.00 0.00 3.51
29 30 0.105964 CCCGACCTTGTGTTGTCTGA 59.894 55.000 0.00 0.00 0.00 3.27
30 31 1.270839 CCCGACCTTGTGTTGTCTGAT 60.271 52.381 0.00 0.00 0.00 2.90
31 32 2.028476 CCCGACCTTGTGTTGTCTGATA 60.028 50.000 0.00 0.00 0.00 2.15
32 33 2.993899 CCGACCTTGTGTTGTCTGATAC 59.006 50.000 0.00 0.00 0.00 2.24
33 34 2.993899 CGACCTTGTGTTGTCTGATACC 59.006 50.000 0.00 0.00 0.00 2.73
34 35 3.335579 GACCTTGTGTTGTCTGATACCC 58.664 50.000 0.00 0.00 0.00 3.69
35 36 2.289444 ACCTTGTGTTGTCTGATACCCG 60.289 50.000 0.00 0.00 0.00 5.28
36 37 2.028476 CCTTGTGTTGTCTGATACCCGA 60.028 50.000 0.00 0.00 0.00 5.14
37 38 3.254060 CTTGTGTTGTCTGATACCCGAG 58.746 50.000 0.00 0.00 0.00 4.63
38 39 1.548719 TGTGTTGTCTGATACCCGAGG 59.451 52.381 0.00 0.00 0.00 4.63
39 40 1.549170 GTGTTGTCTGATACCCGAGGT 59.451 52.381 1.14 1.14 40.16 3.85
40 41 1.822990 TGTTGTCTGATACCCGAGGTC 59.177 52.381 0.00 0.00 37.09 3.85
41 42 1.100510 TTGTCTGATACCCGAGGTCG 58.899 55.000 0.00 0.00 37.09 4.79
42 43 1.359475 GTCTGATACCCGAGGTCGC 59.641 63.158 0.00 0.00 37.09 5.19
43 44 1.077285 TCTGATACCCGAGGTCGCA 60.077 57.895 0.00 0.00 37.09 5.10
44 45 1.065928 CTGATACCCGAGGTCGCAC 59.934 63.158 0.00 0.00 37.09 5.34
45 46 1.379443 TGATACCCGAGGTCGCACT 60.379 57.895 0.00 0.00 37.09 4.40
46 47 1.359475 GATACCCGAGGTCGCACTC 59.641 63.158 0.00 0.00 37.09 3.51
47 48 1.379443 ATACCCGAGGTCGCACTCA 60.379 57.895 0.00 0.00 37.09 3.41
48 49 0.755698 ATACCCGAGGTCGCACTCAT 60.756 55.000 0.00 0.00 37.09 2.90
49 50 0.968901 TACCCGAGGTCGCACTCATT 60.969 55.000 0.00 0.00 37.09 2.57
50 51 1.811266 CCCGAGGTCGCACTCATTG 60.811 63.158 6.93 0.00 37.34 2.82
51 52 1.811266 CCGAGGTCGCACTCATTGG 60.811 63.158 6.93 0.00 37.34 3.16
52 53 1.811266 CGAGGTCGCACTCATTGGG 60.811 63.158 6.93 0.00 37.34 4.12
53 54 2.045926 AGGTCGCACTCATTGGGC 60.046 61.111 0.00 0.00 42.86 5.36
58 59 3.368822 GCACTCATTGGGCAGCAA 58.631 55.556 0.00 0.00 46.29 3.91
59 60 1.667151 GCACTCATTGGGCAGCAAA 59.333 52.632 0.00 0.00 46.29 3.68
60 61 0.389426 GCACTCATTGGGCAGCAAAG 60.389 55.000 0.00 0.00 46.29 2.77
61 62 1.250328 CACTCATTGGGCAGCAAAGA 58.750 50.000 0.00 0.00 0.00 2.52
62 63 1.822990 CACTCATTGGGCAGCAAAGAT 59.177 47.619 0.00 0.00 0.00 2.40
63 64 1.822990 ACTCATTGGGCAGCAAAGATG 59.177 47.619 0.00 0.00 0.00 2.90
64 65 2.097036 CTCATTGGGCAGCAAAGATGA 58.903 47.619 0.00 0.00 0.00 2.92
65 66 2.494471 CTCATTGGGCAGCAAAGATGAA 59.506 45.455 0.00 0.00 0.00 2.57
66 67 3.101437 TCATTGGGCAGCAAAGATGAAT 58.899 40.909 0.00 0.00 0.00 2.57
67 68 4.279982 TCATTGGGCAGCAAAGATGAATA 58.720 39.130 0.00 0.00 0.00 1.75
68 69 4.710865 TCATTGGGCAGCAAAGATGAATAA 59.289 37.500 0.00 0.00 0.00 1.40
69 70 4.454728 TTGGGCAGCAAAGATGAATAAC 57.545 40.909 0.00 0.00 0.00 1.89
70 71 3.429492 TGGGCAGCAAAGATGAATAACA 58.571 40.909 0.00 0.00 0.00 2.41
71 72 4.025360 TGGGCAGCAAAGATGAATAACAT 58.975 39.130 0.00 0.00 42.47 2.71
82 83 2.355197 TGAATAACATCAGCACCACGG 58.645 47.619 0.00 0.00 0.00 4.94
83 84 1.670811 GAATAACATCAGCACCACGGG 59.329 52.381 0.00 0.00 0.00 5.28
84 85 0.908910 ATAACATCAGCACCACGGGA 59.091 50.000 0.00 0.00 0.00 5.14
85 86 0.249120 TAACATCAGCACCACGGGAG 59.751 55.000 0.00 0.00 0.00 4.30
87 88 1.003355 CATCAGCACCACGGGAGTT 60.003 57.895 0.00 0.00 44.67 3.01
88 89 1.003355 ATCAGCACCACGGGAGTTG 60.003 57.895 0.00 0.00 44.67 3.16
89 90 3.357079 CAGCACCACGGGAGTTGC 61.357 66.667 0.00 0.00 44.69 4.17
91 92 3.357079 GCACCACGGGAGTTGCTG 61.357 66.667 0.00 0.00 44.67 4.41
92 93 3.357079 CACCACGGGAGTTGCTGC 61.357 66.667 0.00 0.00 44.67 5.25
93 94 3.872603 ACCACGGGAGTTGCTGCA 61.873 61.111 0.00 0.00 44.67 4.41
94 95 3.052082 CCACGGGAGTTGCTGCAG 61.052 66.667 10.11 10.11 44.67 4.41
95 96 2.281070 CACGGGAGTTGCTGCAGT 60.281 61.111 16.64 0.00 44.67 4.40
96 97 1.005037 CACGGGAGTTGCTGCAGTA 60.005 57.895 16.64 8.31 44.67 2.74
97 98 1.004918 ACGGGAGTTGCTGCAGTAC 60.005 57.895 16.64 13.75 43.33 2.73
98 99 1.293498 CGGGAGTTGCTGCAGTACT 59.707 57.895 19.35 19.35 0.00 2.73
99 100 0.530744 CGGGAGTTGCTGCAGTACTA 59.469 55.000 16.64 0.00 0.00 1.82
100 101 1.736032 CGGGAGTTGCTGCAGTACTAC 60.736 57.143 19.40 19.40 0.00 2.73
101 102 1.630148 GGAGTTGCTGCAGTACTACG 58.370 55.000 16.64 0.00 0.00 3.51
102 103 0.992802 GAGTTGCTGCAGTACTACGC 59.007 55.000 16.64 5.08 0.00 4.42
103 104 0.389948 AGTTGCTGCAGTACTACGCC 60.390 55.000 16.64 0.00 0.00 5.68
104 105 0.389948 GTTGCTGCAGTACTACGCCT 60.390 55.000 16.64 0.00 0.00 5.52
105 106 1.135199 GTTGCTGCAGTACTACGCCTA 60.135 52.381 16.64 0.00 0.00 3.93
106 107 0.454600 TGCTGCAGTACTACGCCTAC 59.545 55.000 16.64 0.00 0.00 3.18
117 118 2.202878 CGCCTACGTGACATGGGG 60.203 66.667 0.00 2.43 33.53 4.96
118 119 2.717044 CGCCTACGTGACATGGGGA 61.717 63.158 0.00 0.00 34.94 4.81
119 120 1.600107 GCCTACGTGACATGGGGAA 59.400 57.895 0.00 0.00 0.00 3.97
120 121 0.180406 GCCTACGTGACATGGGGAAT 59.820 55.000 0.00 0.00 0.00 3.01
121 122 1.408266 GCCTACGTGACATGGGGAATT 60.408 52.381 0.00 0.00 0.00 2.17
122 123 2.944094 GCCTACGTGACATGGGGAATTT 60.944 50.000 0.00 0.00 0.00 1.82
123 124 2.682856 CCTACGTGACATGGGGAATTTG 59.317 50.000 0.00 0.00 0.00 2.32
124 125 1.544724 ACGTGACATGGGGAATTTGG 58.455 50.000 0.00 0.00 0.00 3.28
125 126 1.203001 ACGTGACATGGGGAATTTGGT 60.203 47.619 0.00 0.00 0.00 3.67
126 127 1.472480 CGTGACATGGGGAATTTGGTC 59.528 52.381 0.00 0.00 0.00 4.02
127 128 1.824852 GTGACATGGGGAATTTGGTCC 59.175 52.381 0.00 0.00 36.90 4.46
128 129 1.715931 TGACATGGGGAATTTGGTCCT 59.284 47.619 0.00 0.00 37.85 3.85
129 130 2.291540 TGACATGGGGAATTTGGTCCTC 60.292 50.000 0.00 0.00 38.82 3.71
130 131 1.007118 ACATGGGGAATTTGGTCCTCC 59.993 52.381 0.00 0.00 37.36 4.30
131 132 1.006998 CATGGGGAATTTGGTCCTCCA 59.993 52.381 0.00 0.00 37.36 3.86
144 145 4.023291 TGGTCCTCCAATTCCAAAATAGC 58.977 43.478 0.00 0.00 41.25 2.97
145 146 4.264352 TGGTCCTCCAATTCCAAAATAGCT 60.264 41.667 0.00 0.00 41.25 3.32
146 147 4.339530 GGTCCTCCAATTCCAAAATAGCTC 59.660 45.833 0.00 0.00 0.00 4.09
147 148 4.949856 GTCCTCCAATTCCAAAATAGCTCA 59.050 41.667 0.00 0.00 0.00 4.26
148 149 5.418840 GTCCTCCAATTCCAAAATAGCTCAA 59.581 40.000 0.00 0.00 0.00 3.02
149 150 5.418840 TCCTCCAATTCCAAAATAGCTCAAC 59.581 40.000 0.00 0.00 0.00 3.18
150 151 5.420104 CCTCCAATTCCAAAATAGCTCAACT 59.580 40.000 0.00 0.00 0.00 3.16
151 152 6.271488 TCCAATTCCAAAATAGCTCAACTG 57.729 37.500 0.00 0.00 0.00 3.16
152 153 5.774690 TCCAATTCCAAAATAGCTCAACTGT 59.225 36.000 0.00 0.00 0.00 3.55
153 154 6.945435 TCCAATTCCAAAATAGCTCAACTGTA 59.055 34.615 0.00 0.00 0.00 2.74
154 155 7.615365 TCCAATTCCAAAATAGCTCAACTGTAT 59.385 33.333 0.00 0.00 0.00 2.29
155 156 7.703621 CCAATTCCAAAATAGCTCAACTGTATG 59.296 37.037 0.00 0.00 0.00 2.39
156 157 6.757897 TTCCAAAATAGCTCAACTGTATGG 57.242 37.500 0.00 0.00 31.58 2.74
157 158 5.815581 TCCAAAATAGCTCAACTGTATGGT 58.184 37.500 0.00 0.00 31.99 3.55
158 159 6.953101 TCCAAAATAGCTCAACTGTATGGTA 58.047 36.000 0.00 0.00 31.99 3.25
159 160 7.398829 TCCAAAATAGCTCAACTGTATGGTAA 58.601 34.615 0.00 0.00 31.99 2.85
160 161 7.885922 TCCAAAATAGCTCAACTGTATGGTAAA 59.114 33.333 0.00 0.00 31.99 2.01
161 162 8.184192 CCAAAATAGCTCAACTGTATGGTAAAG 58.816 37.037 0.00 0.00 0.00 1.85
162 163 8.730680 CAAAATAGCTCAACTGTATGGTAAAGT 58.269 33.333 0.00 0.00 0.00 2.66
163 164 8.863872 AAATAGCTCAACTGTATGGTAAAGTT 57.136 30.769 0.00 0.00 34.52 2.66
164 165 8.863872 AATAGCTCAACTGTATGGTAAAGTTT 57.136 30.769 0.00 0.00 31.88 2.66
165 166 8.863872 ATAGCTCAACTGTATGGTAAAGTTTT 57.136 30.769 0.00 0.00 31.88 2.43
166 167 7.203255 AGCTCAACTGTATGGTAAAGTTTTC 57.797 36.000 0.00 0.00 31.88 2.29
167 168 6.206829 AGCTCAACTGTATGGTAAAGTTTTCC 59.793 38.462 4.38 4.38 31.88 3.13
168 169 6.569801 GCTCAACTGTATGGTAAAGTTTTCCC 60.570 42.308 8.62 3.37 31.88 3.97
169 170 5.470777 TCAACTGTATGGTAAAGTTTTCCCG 59.529 40.000 8.62 0.00 31.88 5.14
170 171 4.329392 ACTGTATGGTAAAGTTTTCCCGG 58.671 43.478 8.62 0.00 0.00 5.73
171 172 4.041938 ACTGTATGGTAAAGTTTTCCCGGA 59.958 41.667 0.73 0.00 0.00 5.14
172 173 5.182169 TGTATGGTAAAGTTTTCCCGGAT 57.818 39.130 0.73 0.00 0.00 4.18
173 174 6.070078 ACTGTATGGTAAAGTTTTCCCGGATA 60.070 38.462 0.73 0.00 0.00 2.59
174 175 6.902408 TGTATGGTAAAGTTTTCCCGGATAT 58.098 36.000 0.73 0.00 0.00 1.63
175 176 6.768861 TGTATGGTAAAGTTTTCCCGGATATG 59.231 38.462 0.73 0.00 0.00 1.78
176 177 5.438698 TGGTAAAGTTTTCCCGGATATGA 57.561 39.130 0.73 0.00 0.00 2.15
177 178 5.433526 TGGTAAAGTTTTCCCGGATATGAG 58.566 41.667 0.73 0.00 0.00 2.90
178 179 4.820173 GGTAAAGTTTTCCCGGATATGAGG 59.180 45.833 0.73 0.00 0.00 3.86
179 180 4.586306 AAAGTTTTCCCGGATATGAGGT 57.414 40.909 0.73 0.00 0.00 3.85
180 181 4.586306 AAGTTTTCCCGGATATGAGGTT 57.414 40.909 0.73 0.00 0.00 3.50
181 182 4.152284 AGTTTTCCCGGATATGAGGTTC 57.848 45.455 0.73 0.00 0.00 3.62
182 183 3.780850 AGTTTTCCCGGATATGAGGTTCT 59.219 43.478 0.73 0.00 0.00 3.01
183 184 4.227527 AGTTTTCCCGGATATGAGGTTCTT 59.772 41.667 0.73 0.00 0.00 2.52
184 185 3.838244 TTCCCGGATATGAGGTTCTTG 57.162 47.619 0.73 0.00 0.00 3.02
185 186 2.759355 TCCCGGATATGAGGTTCTTGT 58.241 47.619 0.73 0.00 0.00 3.16
186 187 3.112263 TCCCGGATATGAGGTTCTTGTT 58.888 45.455 0.73 0.00 0.00 2.83
187 188 3.118408 TCCCGGATATGAGGTTCTTGTTG 60.118 47.826 0.73 0.00 0.00 3.33
188 189 3.118408 CCCGGATATGAGGTTCTTGTTGA 60.118 47.826 0.73 0.00 0.00 3.18
189 190 4.122776 CCGGATATGAGGTTCTTGTTGAG 58.877 47.826 0.00 0.00 0.00 3.02
190 191 3.557595 CGGATATGAGGTTCTTGTTGAGC 59.442 47.826 0.00 0.00 0.00 4.26
191 192 3.557595 GGATATGAGGTTCTTGTTGAGCG 59.442 47.826 0.00 0.00 0.00 5.03
192 193 2.839486 ATGAGGTTCTTGTTGAGCGA 57.161 45.000 0.00 0.00 0.00 4.93
193 194 2.154854 TGAGGTTCTTGTTGAGCGAG 57.845 50.000 0.00 0.00 0.00 5.03
194 195 1.686587 TGAGGTTCTTGTTGAGCGAGA 59.313 47.619 0.00 0.00 35.87 4.04
195 196 2.288457 TGAGGTTCTTGTTGAGCGAGAG 60.288 50.000 0.00 0.00 38.74 3.20
196 197 1.001406 AGGTTCTTGTTGAGCGAGAGG 59.999 52.381 0.00 0.00 38.74 3.69
197 198 1.000955 GGTTCTTGTTGAGCGAGAGGA 59.999 52.381 0.00 0.00 38.74 3.71
198 199 2.333014 GTTCTTGTTGAGCGAGAGGAG 58.667 52.381 0.00 0.00 38.74 3.69
199 200 0.891373 TCTTGTTGAGCGAGAGGAGG 59.109 55.000 0.00 0.00 32.81 4.30
200 201 0.891373 CTTGTTGAGCGAGAGGAGGA 59.109 55.000 0.00 0.00 0.00 3.71
201 202 0.603569 TTGTTGAGCGAGAGGAGGAC 59.396 55.000 0.00 0.00 0.00 3.85
202 203 1.251527 TGTTGAGCGAGAGGAGGACC 61.252 60.000 0.00 0.00 0.00 4.46
203 204 2.046864 TTGAGCGAGAGGAGGACCG 61.047 63.158 0.00 0.00 41.83 4.79
204 205 2.438795 GAGCGAGAGGAGGACCGT 60.439 66.667 0.00 0.00 41.83 4.83
205 206 2.752238 AGCGAGAGGAGGACCGTG 60.752 66.667 0.00 0.00 41.83 4.94
206 207 3.063084 GCGAGAGGAGGACCGTGT 61.063 66.667 0.00 0.00 41.83 4.49
207 208 1.748122 GCGAGAGGAGGACCGTGTA 60.748 63.158 0.00 0.00 41.83 2.90
208 209 1.716826 GCGAGAGGAGGACCGTGTAG 61.717 65.000 0.00 0.00 41.83 2.74
209 210 0.392729 CGAGAGGAGGACCGTGTAGT 60.393 60.000 0.00 0.00 41.83 2.73
210 211 1.381522 GAGAGGAGGACCGTGTAGTC 58.618 60.000 0.00 0.00 41.83 2.59
211 212 0.392729 AGAGGAGGACCGTGTAGTCG 60.393 60.000 0.00 0.00 41.83 4.18
219 220 4.508128 CGTGTAGTCGGGCGCCAT 62.508 66.667 30.85 13.42 0.00 4.40
220 221 2.890474 GTGTAGTCGGGCGCCATG 60.890 66.667 30.85 20.54 0.00 3.66
221 222 3.387091 TGTAGTCGGGCGCCATGT 61.387 61.111 30.85 12.06 0.00 3.21
222 223 2.125269 GTAGTCGGGCGCCATGTT 60.125 61.111 30.85 13.38 0.00 2.71
223 224 2.125310 TAGTCGGGCGCCATGTTG 60.125 61.111 30.85 12.14 0.00 3.33
227 228 4.781959 CGGGCGCCATGTTGCTTG 62.782 66.667 30.85 1.52 0.00 4.01
228 229 4.440127 GGGCGCCATGTTGCTTGG 62.440 66.667 30.85 0.00 37.31 3.61
229 230 3.372730 GGCGCCATGTTGCTTGGA 61.373 61.111 24.80 0.00 36.26 3.53
230 231 2.650196 GCGCCATGTTGCTTGGAA 59.350 55.556 0.00 0.00 36.26 3.53
231 232 1.444895 GCGCCATGTTGCTTGGAAG 60.445 57.895 0.00 0.00 36.26 3.46
232 233 1.213537 CGCCATGTTGCTTGGAAGG 59.786 57.895 5.40 0.00 36.26 3.46
233 234 1.243342 CGCCATGTTGCTTGGAAGGA 61.243 55.000 5.40 0.00 36.26 3.36
234 235 0.244721 GCCATGTTGCTTGGAAGGAC 59.755 55.000 5.40 0.00 36.26 3.85
235 236 0.890683 CCATGTTGCTTGGAAGGACC 59.109 55.000 0.00 0.00 36.26 4.46
267 268 5.368256 CATCCACTGGAGACTTTTCTTTG 57.632 43.478 3.62 0.00 34.05 2.77
268 269 4.771114 TCCACTGGAGACTTTTCTTTGA 57.229 40.909 0.00 0.00 29.47 2.69
269 270 4.708177 TCCACTGGAGACTTTTCTTTGAG 58.292 43.478 0.00 0.00 29.47 3.02
270 271 3.251972 CCACTGGAGACTTTTCTTTGAGC 59.748 47.826 0.00 0.00 29.47 4.26
271 272 3.251972 CACTGGAGACTTTTCTTTGAGCC 59.748 47.826 0.00 0.00 29.47 4.70
272 273 3.137360 ACTGGAGACTTTTCTTTGAGCCT 59.863 43.478 0.00 0.00 29.47 4.58
273 274 4.140536 CTGGAGACTTTTCTTTGAGCCTT 58.859 43.478 0.00 0.00 29.47 4.35
274 275 5.163195 ACTGGAGACTTTTCTTTGAGCCTTA 60.163 40.000 0.00 0.00 29.47 2.69
275 276 5.690865 TGGAGACTTTTCTTTGAGCCTTAA 58.309 37.500 0.00 0.00 29.47 1.85
276 277 5.531287 TGGAGACTTTTCTTTGAGCCTTAAC 59.469 40.000 0.00 0.00 29.47 2.01
277 278 5.765677 GGAGACTTTTCTTTGAGCCTTAACT 59.234 40.000 0.00 0.00 29.47 2.24
278 279 6.293680 GGAGACTTTTCTTTGAGCCTTAACTG 60.294 42.308 0.00 0.00 29.47 3.16
279 280 6.122964 AGACTTTTCTTTGAGCCTTAACTGT 58.877 36.000 0.00 0.00 0.00 3.55
280 281 7.280356 AGACTTTTCTTTGAGCCTTAACTGTA 58.720 34.615 0.00 0.00 0.00 2.74
281 282 7.442666 AGACTTTTCTTTGAGCCTTAACTGTAG 59.557 37.037 0.00 0.00 0.00 2.74
282 283 5.941948 TTTCTTTGAGCCTTAACTGTAGC 57.058 39.130 0.00 0.00 0.00 3.58
283 284 4.891992 TCTTTGAGCCTTAACTGTAGCT 57.108 40.909 0.00 0.00 38.56 3.32
284 285 4.569943 TCTTTGAGCCTTAACTGTAGCTG 58.430 43.478 0.00 0.00 35.23 4.24
285 286 3.334583 TTGAGCCTTAACTGTAGCTGG 57.665 47.619 0.00 0.00 35.23 4.85
286 287 2.536066 TGAGCCTTAACTGTAGCTGGA 58.464 47.619 0.00 0.00 35.23 3.86
287 288 2.903784 TGAGCCTTAACTGTAGCTGGAA 59.096 45.455 0.00 0.00 35.23 3.53
288 289 3.519510 TGAGCCTTAACTGTAGCTGGAAT 59.480 43.478 0.00 0.00 35.23 3.01
289 290 4.123506 GAGCCTTAACTGTAGCTGGAATC 58.876 47.826 0.00 0.00 35.23 2.52
290 291 3.777522 AGCCTTAACTGTAGCTGGAATCT 59.222 43.478 0.00 0.00 33.41 2.40
291 292 4.226168 AGCCTTAACTGTAGCTGGAATCTT 59.774 41.667 0.00 0.00 33.41 2.40
292 293 4.572795 GCCTTAACTGTAGCTGGAATCTTC 59.427 45.833 0.00 0.00 0.00 2.87
293 294 5.734720 CCTTAACTGTAGCTGGAATCTTCA 58.265 41.667 0.00 0.00 0.00 3.02
294 295 6.173339 CCTTAACTGTAGCTGGAATCTTCAA 58.827 40.000 0.00 0.00 0.00 2.69
295 296 6.655003 CCTTAACTGTAGCTGGAATCTTCAAA 59.345 38.462 0.00 0.00 0.00 2.69
296 297 7.337942 CCTTAACTGTAGCTGGAATCTTCAAAT 59.662 37.037 0.00 0.00 0.00 2.32
297 298 6.506500 AACTGTAGCTGGAATCTTCAAATG 57.493 37.500 0.00 0.00 0.00 2.32
298 299 4.946157 ACTGTAGCTGGAATCTTCAAATGG 59.054 41.667 0.00 0.00 0.00 3.16
299 300 4.922206 TGTAGCTGGAATCTTCAAATGGT 58.078 39.130 0.00 0.00 0.00 3.55
300 301 4.943705 TGTAGCTGGAATCTTCAAATGGTC 59.056 41.667 0.00 0.00 0.00 4.02
301 302 4.038271 AGCTGGAATCTTCAAATGGTCA 57.962 40.909 0.00 0.00 0.00 4.02
302 303 4.607239 AGCTGGAATCTTCAAATGGTCAT 58.393 39.130 0.00 0.00 0.00 3.06
303 304 5.021458 AGCTGGAATCTTCAAATGGTCATT 58.979 37.500 0.00 0.00 0.00 2.57
304 305 5.482878 AGCTGGAATCTTCAAATGGTCATTT 59.517 36.000 3.34 3.34 41.33 2.32
313 314 2.250921 AATGGTCATTTGGCATGGGA 57.749 45.000 0.00 0.00 0.00 4.37
314 315 1.488390 ATGGTCATTTGGCATGGGAC 58.512 50.000 0.00 0.00 0.00 4.46
315 316 4.330850 AAATGGTCATTTGGCATGGGACA 61.331 43.478 7.99 0.00 40.58 4.02
316 317 6.139713 AAATGGTCATTTGGCATGGGACAG 62.140 45.833 7.99 0.00 39.98 3.51
330 331 2.113767 GACAGGGTCCTACTACCGC 58.886 63.158 0.00 0.00 40.73 5.68
331 332 1.722636 GACAGGGTCCTACTACCGCG 61.723 65.000 0.00 0.00 40.73 6.46
332 333 1.751927 CAGGGTCCTACTACCGCGT 60.752 63.158 4.92 0.00 40.73 6.01
333 334 1.452833 AGGGTCCTACTACCGCGTC 60.453 63.158 4.92 0.00 40.73 5.19
334 335 2.484928 GGGTCCTACTACCGCGTCC 61.485 68.421 4.92 0.00 40.73 4.79
335 336 2.484928 GGTCCTACTACCGCGTCCC 61.485 68.421 4.92 0.00 0.00 4.46
336 337 2.124151 TCCTACTACCGCGTCCCC 60.124 66.667 4.92 0.00 0.00 4.81
337 338 2.440796 CCTACTACCGCGTCCCCA 60.441 66.667 4.92 0.00 0.00 4.96
338 339 1.831286 CCTACTACCGCGTCCCCAT 60.831 63.158 4.92 0.00 0.00 4.00
339 340 1.362717 CTACTACCGCGTCCCCATG 59.637 63.158 4.92 0.00 0.00 3.66
340 341 2.694829 CTACTACCGCGTCCCCATGC 62.695 65.000 4.92 0.00 0.00 4.06
341 342 3.849951 CTACCGCGTCCCCATGCT 61.850 66.667 4.92 0.00 31.59 3.79
342 343 3.792053 CTACCGCGTCCCCATGCTC 62.792 68.421 4.92 0.00 31.59 4.26
344 345 4.776322 CCGCGTCCCCATGCTCAA 62.776 66.667 4.92 0.00 31.59 3.02
345 346 3.499737 CGCGTCCCCATGCTCAAC 61.500 66.667 0.00 0.00 31.59 3.18
346 347 3.499737 GCGTCCCCATGCTCAACG 61.500 66.667 0.00 0.00 36.48 4.10
347 348 2.819595 CGTCCCCATGCTCAACGG 60.820 66.667 0.00 0.00 0.00 4.44
348 349 2.351276 GTCCCCATGCTCAACGGT 59.649 61.111 0.00 0.00 0.00 4.83
349 350 2.040544 GTCCCCATGCTCAACGGTG 61.041 63.158 0.00 0.00 0.00 4.94
350 351 3.443045 CCCCATGCTCAACGGTGC 61.443 66.667 0.00 0.00 0.00 5.01
351 352 3.803082 CCCATGCTCAACGGTGCG 61.803 66.667 0.00 0.00 36.33 5.34
352 353 4.465512 CCATGCTCAACGGTGCGC 62.466 66.667 8.85 8.85 36.33 6.09
353 354 4.465512 CATGCTCAACGGTGCGCC 62.466 66.667 13.71 6.11 34.43 6.53
354 355 4.704833 ATGCTCAACGGTGCGCCT 62.705 61.111 13.71 0.00 34.43 5.52
355 356 4.927782 TGCTCAACGGTGCGCCTT 62.928 61.111 13.71 0.83 34.43 4.35
356 357 4.389576 GCTCAACGGTGCGCCTTG 62.390 66.667 15.69 16.73 28.73 3.61
357 358 2.972505 CTCAACGGTGCGCCTTGT 60.973 61.111 15.69 2.42 0.00 3.16
358 359 2.515057 TCAACGGTGCGCCTTGTT 60.515 55.556 15.69 9.27 0.00 2.83
359 360 2.353376 CAACGGTGCGCCTTGTTG 60.353 61.111 18.61 18.61 36.17 3.33
360 361 3.591835 AACGGTGCGCCTTGTTGG 61.592 61.111 15.69 0.00 39.35 3.77
361 362 4.555709 ACGGTGCGCCTTGTTGGA 62.556 61.111 15.69 0.00 38.35 3.53
362 363 3.055719 CGGTGCGCCTTGTTGGAT 61.056 61.111 15.69 0.00 38.35 3.41
363 364 2.877691 GGTGCGCCTTGTTGGATC 59.122 61.111 9.68 0.00 38.35 3.36
364 365 2.480555 GTGCGCCTTGTTGGATCG 59.519 61.111 4.18 0.00 38.35 3.69
365 366 2.032634 GTGCGCCTTGTTGGATCGA 61.033 57.895 4.18 0.00 38.35 3.59
366 367 1.302112 TGCGCCTTGTTGGATCGAA 60.302 52.632 4.18 0.00 38.35 3.71
367 368 1.298157 TGCGCCTTGTTGGATCGAAG 61.298 55.000 4.18 0.00 38.35 3.79
368 369 1.019278 GCGCCTTGTTGGATCGAAGA 61.019 55.000 0.00 0.00 38.35 2.87
383 384 2.876091 CGAAGATGTTGGTTCGAGCTA 58.124 47.619 0.00 0.00 46.78 3.32
395 396 2.413765 GAGCTACTTCTCGGGGCG 59.586 66.667 0.00 0.00 0.00 6.13
396 397 2.362632 AGCTACTTCTCGGGGCGT 60.363 61.111 0.00 0.00 0.00 5.68
452 453 3.260205 TCCCCCATTTCTAGGATCATCC 58.740 50.000 0.00 0.00 36.58 3.51
482 483 0.946221 GACGACACAGCTTGAGTGGG 60.946 60.000 7.50 2.05 41.21 4.61
487 488 0.976641 CACAGCTTGAGTGGGGAGTA 59.023 55.000 0.00 0.00 33.43 2.59
517 518 5.127845 ACCGAGTCAACAAGATGAGATATGT 59.872 40.000 0.00 0.00 0.00 2.29
527 528 4.602006 AGATGAGATATGTCGTGTTCACG 58.398 43.478 17.57 17.57 0.00 4.35
528 529 2.526077 TGAGATATGTCGTGTTCACGC 58.474 47.619 18.63 14.24 0.00 5.34
557 2795 4.801624 TGAGCAGGCTAGCACGCG 62.802 66.667 18.24 3.53 36.85 6.01
594 3454 1.959226 CACACGGTCCGTTTGAGGG 60.959 63.158 23.28 9.95 39.48 4.30
677 3543 2.829003 TTTTCCACGTTGGCGCCA 60.829 55.556 29.03 29.03 42.83 5.69
678 3544 2.343163 CTTTTCCACGTTGGCGCCAA 62.343 55.000 37.30 37.30 42.83 4.52
724 3594 5.410924 GCTCAATTGGTCTAAATTTCCACC 58.589 41.667 5.42 10.36 0.00 4.61
725 3595 5.047377 GCTCAATTGGTCTAAATTTCCACCA 60.047 40.000 14.46 14.46 37.13 4.17
750 3624 1.202114 AGAGCAGAAGAAGCAGAGTCG 59.798 52.381 0.00 0.00 0.00 4.18
764 3638 1.535833 GAGTCGTCCTCTGTTCCTCA 58.464 55.000 0.00 0.00 37.22 3.86
765 3639 1.887198 GAGTCGTCCTCTGTTCCTCAA 59.113 52.381 0.00 0.00 37.22 3.02
858 3760 1.270518 CCACTCAACACTCACCTCCAG 60.271 57.143 0.00 0.00 0.00 3.86
876 3792 5.070180 CCTCCAGCTCCCATCACTATATATG 59.930 48.000 0.00 0.00 0.00 1.78
878 3839 5.896106 TCCAGCTCCCATCACTATATATGAG 59.104 44.000 0.00 0.00 0.00 2.90
879 3840 5.453057 CCAGCTCCCATCACTATATATGAGC 60.453 48.000 8.60 8.60 43.19 4.26
969 3944 2.503765 TGCAAAGTTCCCTCCATCGATA 59.496 45.455 0.00 0.00 0.00 2.92
1008 3989 2.851824 CGCGAAACAATTAATGGCTTCC 59.148 45.455 0.00 0.00 0.00 3.46
1140 4136 1.216710 GTCCAGCGAGGTGAAGGAG 59.783 63.158 3.61 0.00 39.02 3.69
1141 4137 1.076727 TCCAGCGAGGTGAAGGAGA 59.923 57.895 3.61 0.00 39.02 3.71
1142 4138 0.541998 TCCAGCGAGGTGAAGGAGAA 60.542 55.000 3.61 0.00 39.02 2.87
1143 4139 0.108424 CCAGCGAGGTGAAGGAGAAG 60.108 60.000 3.61 0.00 0.00 2.85
1144 4140 0.108424 CAGCGAGGTGAAGGAGAAGG 60.108 60.000 0.00 0.00 0.00 3.46
1145 4141 0.251832 AGCGAGGTGAAGGAGAAGGA 60.252 55.000 0.00 0.00 0.00 3.36
1168 4164 1.081906 GCGGTCGTCGACAAGTACA 60.082 57.895 25.64 0.00 42.43 2.90
1321 4327 5.237815 ACAAGAGAAATCGTTCAGCATACA 58.762 37.500 0.00 0.00 36.09 2.29
1339 4388 5.727434 CATACATATGCTCACTGGCTGATA 58.273 41.667 1.58 0.00 0.00 2.15
1350 4414 3.077359 ACTGGCTGATAGTTTGTTCTGC 58.923 45.455 0.00 0.00 36.44 4.26
1475 4573 4.024893 TGTTGATTGAAAGAGTTCTGTCGC 60.025 41.667 0.00 0.00 32.82 5.19
1486 4584 1.855360 GTTCTGTCGCGATCCATTCTC 59.145 52.381 14.06 0.00 0.00 2.87
1640 4750 0.304705 CGCCGCCATTCTTACATGAC 59.695 55.000 0.00 0.00 0.00 3.06
1653 4763 7.591006 TTCTTACATGACGAATTGACCTAAC 57.409 36.000 0.00 0.00 0.00 2.34
1659 4769 4.556233 TGACGAATTGACCTAACTCAGTG 58.444 43.478 0.00 0.00 0.00 3.66
1673 4794 3.555966 ACTCAGTGGGAAAAAGGTGAAG 58.444 45.455 0.00 0.00 0.00 3.02
1721 4842 2.517402 TGCGTCGGCTGGGTTTTT 60.517 55.556 0.00 0.00 40.82 1.94
1722 4843 1.227883 TGCGTCGGCTGGGTTTTTA 60.228 52.632 0.00 0.00 40.82 1.52
1734 4855 2.232399 GGGTTTTTAGAACCGCTTCCA 58.768 47.619 0.00 0.00 41.18 3.53
1735 4856 2.228103 GGGTTTTTAGAACCGCTTCCAG 59.772 50.000 0.00 0.00 41.18 3.86
1743 4864 1.789576 AACCGCTTCCAGGATTGGGT 61.790 55.000 6.99 4.06 45.10 4.51
1833 4954 3.003173 CCAGGGGCTTCGACAGGA 61.003 66.667 0.00 0.00 0.00 3.86
1866 4988 1.984570 CCCTGCTCTTCGTCCTGGA 60.985 63.158 0.00 0.00 0.00 3.86
1891 5013 2.040278 TGATCCACTTCAAGGGGTTCTG 59.960 50.000 16.39 0.00 40.57 3.02
1893 5015 0.771127 CCACTTCAAGGGGTTCTGGA 59.229 55.000 0.00 0.00 32.85 3.86
1894 5016 1.355720 CCACTTCAAGGGGTTCTGGAT 59.644 52.381 0.00 0.00 32.85 3.41
1895 5017 2.576191 CCACTTCAAGGGGTTCTGGATA 59.424 50.000 0.00 0.00 32.85 2.59
1896 5018 3.610911 CACTTCAAGGGGTTCTGGATAC 58.389 50.000 0.00 0.00 0.00 2.24
1897 5019 6.096544 CCACTTCAAGGGGTTCTGGATACA 62.097 50.000 0.00 0.00 38.14 2.29
1964 5087 5.393124 CGGTTGTTCGTACTTCACTATACA 58.607 41.667 0.00 0.00 0.00 2.29
2225 5348 3.855255 TGGACTTCCAACATCTTGACA 57.145 42.857 0.00 0.00 44.35 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.476771 ACAAGGTCGGGATTGTTGGT 59.523 50.000 0.00 0.00 36.23 3.67
2 3 0.881118 CACAAGGTCGGGATTGTTGG 59.119 55.000 0.00 0.00 37.54 3.77
4 5 1.953686 CAACACAAGGTCGGGATTGTT 59.046 47.619 0.00 0.00 37.54 2.83
5 6 1.133915 ACAACACAAGGTCGGGATTGT 60.134 47.619 0.00 0.00 40.18 2.71
6 7 1.535462 GACAACACAAGGTCGGGATTG 59.465 52.381 0.00 0.00 0.00 2.67
7 8 1.420138 AGACAACACAAGGTCGGGATT 59.580 47.619 0.00 0.00 39.01 3.01
8 9 1.056660 AGACAACACAAGGTCGGGAT 58.943 50.000 0.00 0.00 39.01 3.85
9 10 0.105964 CAGACAACACAAGGTCGGGA 59.894 55.000 0.00 0.00 39.01 5.14
10 11 0.105964 TCAGACAACACAAGGTCGGG 59.894 55.000 0.00 0.00 39.01 5.14
11 12 2.169832 ATCAGACAACACAAGGTCGG 57.830 50.000 0.00 0.00 39.01 4.79
12 13 2.993899 GGTATCAGACAACACAAGGTCG 59.006 50.000 0.00 0.00 39.01 4.79
13 14 3.335579 GGGTATCAGACAACACAAGGTC 58.664 50.000 0.00 0.00 0.00 3.85
14 15 2.289444 CGGGTATCAGACAACACAAGGT 60.289 50.000 0.00 0.00 0.00 3.50
15 16 2.028476 TCGGGTATCAGACAACACAAGG 60.028 50.000 0.00 0.00 0.00 3.61
16 17 3.254060 CTCGGGTATCAGACAACACAAG 58.746 50.000 0.00 0.00 0.00 3.16
17 18 2.028476 CCTCGGGTATCAGACAACACAA 60.028 50.000 0.00 0.00 0.00 3.33
18 19 1.548719 CCTCGGGTATCAGACAACACA 59.451 52.381 0.00 0.00 0.00 3.72
19 20 1.549170 ACCTCGGGTATCAGACAACAC 59.451 52.381 0.00 0.00 32.11 3.32
20 21 1.822990 GACCTCGGGTATCAGACAACA 59.177 52.381 0.00 0.00 35.25 3.33
21 22 1.202268 CGACCTCGGGTATCAGACAAC 60.202 57.143 0.00 0.00 35.25 3.32
22 23 1.100510 CGACCTCGGGTATCAGACAA 58.899 55.000 0.00 0.00 35.25 3.18
23 24 1.381928 GCGACCTCGGGTATCAGACA 61.382 60.000 0.00 0.00 35.25 3.41
24 25 1.359475 GCGACCTCGGGTATCAGAC 59.641 63.158 0.00 0.00 35.25 3.51
25 26 1.077285 TGCGACCTCGGGTATCAGA 60.077 57.895 0.00 0.00 35.25 3.27
26 27 1.065928 GTGCGACCTCGGGTATCAG 59.934 63.158 0.00 0.00 35.25 2.90
27 28 1.379443 AGTGCGACCTCGGGTATCA 60.379 57.895 0.00 0.00 35.25 2.15
28 29 1.359475 GAGTGCGACCTCGGGTATC 59.641 63.158 0.00 0.00 35.25 2.24
29 30 0.755698 ATGAGTGCGACCTCGGGTAT 60.756 55.000 0.00 0.00 35.25 2.73
30 31 0.968901 AATGAGTGCGACCTCGGGTA 60.969 55.000 0.00 0.00 35.25 3.69
31 32 2.283529 AATGAGTGCGACCTCGGGT 61.284 57.895 0.00 0.00 39.44 5.28
32 33 1.811266 CAATGAGTGCGACCTCGGG 60.811 63.158 0.00 0.00 40.23 5.14
33 34 1.811266 CCAATGAGTGCGACCTCGG 60.811 63.158 0.00 0.00 40.23 4.63
34 35 1.811266 CCCAATGAGTGCGACCTCG 60.811 63.158 0.00 0.00 43.27 4.63
35 36 2.109126 GCCCAATGAGTGCGACCTC 61.109 63.158 0.00 0.00 0.00 3.85
36 37 2.045926 GCCCAATGAGTGCGACCT 60.046 61.111 0.00 0.00 0.00 3.85
37 38 2.359850 TGCCCAATGAGTGCGACC 60.360 61.111 0.00 0.00 0.00 4.79
38 39 3.044059 GCTGCCCAATGAGTGCGAC 62.044 63.158 0.00 0.00 0.00 5.19
39 40 2.747460 GCTGCCCAATGAGTGCGA 60.747 61.111 0.00 0.00 0.00 5.10
40 41 2.144833 TTTGCTGCCCAATGAGTGCG 62.145 55.000 0.00 0.00 32.49 5.34
41 42 0.389426 CTTTGCTGCCCAATGAGTGC 60.389 55.000 0.00 0.00 32.49 4.40
42 43 1.250328 TCTTTGCTGCCCAATGAGTG 58.750 50.000 0.00 0.00 33.98 3.51
43 44 1.822990 CATCTTTGCTGCCCAATGAGT 59.177 47.619 0.00 0.00 39.88 3.41
44 45 2.097036 TCATCTTTGCTGCCCAATGAG 58.903 47.619 0.00 0.00 39.88 2.90
45 46 2.219080 TCATCTTTGCTGCCCAATGA 57.781 45.000 0.00 0.00 40.53 2.57
46 47 3.536956 ATTCATCTTTGCTGCCCAATG 57.463 42.857 0.00 0.00 32.49 2.82
47 48 4.467082 TGTTATTCATCTTTGCTGCCCAAT 59.533 37.500 0.00 0.00 32.49 3.16
48 49 3.831333 TGTTATTCATCTTTGCTGCCCAA 59.169 39.130 0.00 0.00 0.00 4.12
49 50 3.429492 TGTTATTCATCTTTGCTGCCCA 58.571 40.909 0.00 0.00 0.00 5.36
50 51 4.614946 GATGTTATTCATCTTTGCTGCCC 58.385 43.478 0.00 0.00 46.64 5.36
61 62 2.945008 CCGTGGTGCTGATGTTATTCAT 59.055 45.455 0.00 0.00 39.77 2.57
62 63 2.355197 CCGTGGTGCTGATGTTATTCA 58.645 47.619 0.00 0.00 0.00 2.57
63 64 1.670811 CCCGTGGTGCTGATGTTATTC 59.329 52.381 0.00 0.00 0.00 1.75
64 65 1.280710 TCCCGTGGTGCTGATGTTATT 59.719 47.619 0.00 0.00 0.00 1.40
65 66 0.908910 TCCCGTGGTGCTGATGTTAT 59.091 50.000 0.00 0.00 0.00 1.89
66 67 0.249120 CTCCCGTGGTGCTGATGTTA 59.751 55.000 0.00 0.00 0.00 2.41
67 68 1.003355 CTCCCGTGGTGCTGATGTT 60.003 57.895 0.00 0.00 0.00 2.71
68 69 1.768684 AACTCCCGTGGTGCTGATGT 61.769 55.000 0.00 0.00 0.00 3.06
69 70 1.003355 AACTCCCGTGGTGCTGATG 60.003 57.895 0.00 0.00 0.00 3.07
70 71 1.003355 CAACTCCCGTGGTGCTGAT 60.003 57.895 0.00 0.00 0.00 2.90
71 72 2.425592 CAACTCCCGTGGTGCTGA 59.574 61.111 0.00 0.00 0.00 4.26
72 73 3.357079 GCAACTCCCGTGGTGCTG 61.357 66.667 0.00 0.00 0.00 4.41
73 74 3.560251 AGCAACTCCCGTGGTGCT 61.560 61.111 3.53 3.53 0.00 4.40
74 75 3.357079 CAGCAACTCCCGTGGTGC 61.357 66.667 0.00 0.00 0.00 5.01
75 76 3.357079 GCAGCAACTCCCGTGGTG 61.357 66.667 0.00 0.00 0.00 4.17
76 77 3.832237 CTGCAGCAACTCCCGTGGT 62.832 63.158 0.00 0.00 0.00 4.16
77 78 2.449031 TACTGCAGCAACTCCCGTGG 62.449 60.000 15.27 0.00 0.00 4.94
78 79 1.005037 TACTGCAGCAACTCCCGTG 60.005 57.895 15.27 0.00 0.00 4.94
79 80 1.004918 GTACTGCAGCAACTCCCGT 60.005 57.895 15.27 0.00 0.00 5.28
80 81 0.530744 TAGTACTGCAGCAACTCCCG 59.469 55.000 21.87 0.00 0.00 5.14
81 82 1.736032 CGTAGTACTGCAGCAACTCCC 60.736 57.143 21.87 14.29 0.00 4.30
82 83 1.630148 CGTAGTACTGCAGCAACTCC 58.370 55.000 21.87 12.51 0.00 3.85
83 84 0.992802 GCGTAGTACTGCAGCAACTC 59.007 55.000 21.87 14.03 0.00 3.01
84 85 0.389948 GGCGTAGTACTGCAGCAACT 60.390 55.000 21.90 21.90 0.00 3.16
85 86 0.389948 AGGCGTAGTACTGCAGCAAC 60.390 55.000 15.27 12.75 0.00 4.17
86 87 1.135199 GTAGGCGTAGTACTGCAGCAA 60.135 52.381 15.27 0.00 0.00 3.91
87 88 0.454600 GTAGGCGTAGTACTGCAGCA 59.545 55.000 15.27 0.00 0.00 4.41
88 89 0.591741 CGTAGGCGTAGTACTGCAGC 60.592 60.000 15.27 13.91 0.00 5.25
89 90 3.528594 CGTAGGCGTAGTACTGCAG 57.471 57.895 13.48 13.48 0.00 4.41
100 101 2.202878 CCCCATGTCACGTAGGCG 60.203 66.667 0.00 0.00 44.93 5.52
101 102 0.180406 ATTCCCCATGTCACGTAGGC 59.820 55.000 0.00 0.00 0.00 3.93
102 103 2.682856 CAAATTCCCCATGTCACGTAGG 59.317 50.000 0.00 0.00 0.00 3.18
103 104 2.682856 CCAAATTCCCCATGTCACGTAG 59.317 50.000 0.00 0.00 0.00 3.51
104 105 2.040545 ACCAAATTCCCCATGTCACGTA 59.959 45.455 0.00 0.00 0.00 3.57
105 106 1.203001 ACCAAATTCCCCATGTCACGT 60.203 47.619 0.00 0.00 0.00 4.49
106 107 1.472480 GACCAAATTCCCCATGTCACG 59.528 52.381 0.00 0.00 0.00 4.35
107 108 1.824852 GGACCAAATTCCCCATGTCAC 59.175 52.381 0.00 0.00 0.00 3.67
108 109 1.715931 AGGACCAAATTCCCCATGTCA 59.284 47.619 0.00 0.00 36.12 3.58
109 110 2.379005 GAGGACCAAATTCCCCATGTC 58.621 52.381 0.00 0.00 36.12 3.06
110 111 1.007118 GGAGGACCAAATTCCCCATGT 59.993 52.381 0.00 0.00 36.12 3.21
111 112 1.006998 TGGAGGACCAAATTCCCCATG 59.993 52.381 0.00 0.00 43.91 3.66
112 113 1.392407 TGGAGGACCAAATTCCCCAT 58.608 50.000 0.00 0.00 43.91 4.00
113 114 2.890258 TGGAGGACCAAATTCCCCA 58.110 52.632 0.00 0.00 43.91 4.96
122 123 4.023291 GCTATTTTGGAATTGGAGGACCA 58.977 43.478 0.00 0.00 45.34 4.02
123 124 4.281657 AGCTATTTTGGAATTGGAGGACC 58.718 43.478 0.00 0.00 0.00 4.46
124 125 4.949856 TGAGCTATTTTGGAATTGGAGGAC 59.050 41.667 0.00 0.00 0.00 3.85
125 126 5.191727 TGAGCTATTTTGGAATTGGAGGA 57.808 39.130 0.00 0.00 0.00 3.71
126 127 5.420104 AGTTGAGCTATTTTGGAATTGGAGG 59.580 40.000 0.00 0.00 0.00 4.30
127 128 6.071728 ACAGTTGAGCTATTTTGGAATTGGAG 60.072 38.462 0.00 0.00 0.00 3.86
128 129 5.774690 ACAGTTGAGCTATTTTGGAATTGGA 59.225 36.000 0.00 0.00 0.00 3.53
129 130 6.029346 ACAGTTGAGCTATTTTGGAATTGG 57.971 37.500 0.00 0.00 0.00 3.16
130 131 7.703621 CCATACAGTTGAGCTATTTTGGAATTG 59.296 37.037 0.00 0.00 0.00 2.32
131 132 7.397192 ACCATACAGTTGAGCTATTTTGGAATT 59.603 33.333 0.00 0.00 0.00 2.17
132 133 6.891908 ACCATACAGTTGAGCTATTTTGGAAT 59.108 34.615 0.00 0.00 0.00 3.01
133 134 6.245408 ACCATACAGTTGAGCTATTTTGGAA 58.755 36.000 0.00 0.00 0.00 3.53
134 135 5.815581 ACCATACAGTTGAGCTATTTTGGA 58.184 37.500 0.00 0.00 0.00 3.53
135 136 7.624360 TTACCATACAGTTGAGCTATTTTGG 57.376 36.000 0.00 0.00 0.00 3.28
136 137 8.730680 ACTTTACCATACAGTTGAGCTATTTTG 58.269 33.333 0.00 0.00 0.00 2.44
137 138 8.863872 ACTTTACCATACAGTTGAGCTATTTT 57.136 30.769 0.00 0.00 0.00 1.82
138 139 8.863872 AACTTTACCATACAGTTGAGCTATTT 57.136 30.769 0.00 0.00 29.36 1.40
139 140 8.863872 AAACTTTACCATACAGTTGAGCTATT 57.136 30.769 0.00 0.00 31.00 1.73
140 141 8.863872 AAAACTTTACCATACAGTTGAGCTAT 57.136 30.769 0.00 0.00 31.00 2.97
141 142 7.389607 GGAAAACTTTACCATACAGTTGAGCTA 59.610 37.037 0.00 0.00 31.00 3.32
142 143 6.206829 GGAAAACTTTACCATACAGTTGAGCT 59.793 38.462 0.00 0.00 31.00 4.09
143 144 6.379386 GGAAAACTTTACCATACAGTTGAGC 58.621 40.000 0.00 0.00 31.00 4.26
144 145 6.348213 CGGGAAAACTTTACCATACAGTTGAG 60.348 42.308 4.34 0.00 41.48 3.02
145 146 5.470777 CGGGAAAACTTTACCATACAGTTGA 59.529 40.000 4.34 0.00 41.48 3.18
146 147 5.335348 CCGGGAAAACTTTACCATACAGTTG 60.335 44.000 4.34 0.00 41.48 3.16
147 148 4.763279 CCGGGAAAACTTTACCATACAGTT 59.237 41.667 4.34 0.00 41.48 3.16
148 149 4.041938 TCCGGGAAAACTTTACCATACAGT 59.958 41.667 0.00 0.00 41.48 3.55
149 150 4.581868 TCCGGGAAAACTTTACCATACAG 58.418 43.478 0.00 0.00 41.48 2.74
150 151 4.637387 TCCGGGAAAACTTTACCATACA 57.363 40.909 0.00 0.00 41.48 2.29
151 152 6.993902 TCATATCCGGGAAAACTTTACCATAC 59.006 38.462 0.00 0.00 41.48 2.39
152 153 7.139287 TCATATCCGGGAAAACTTTACCATA 57.861 36.000 0.00 0.00 41.48 2.74
153 154 6.008696 TCATATCCGGGAAAACTTTACCAT 57.991 37.500 0.00 0.00 41.48 3.55
154 155 5.433526 CTCATATCCGGGAAAACTTTACCA 58.566 41.667 0.00 0.00 41.48 3.25
155 156 4.820173 CCTCATATCCGGGAAAACTTTACC 59.180 45.833 0.00 0.00 37.83 2.85
156 157 5.434408 ACCTCATATCCGGGAAAACTTTAC 58.566 41.667 0.00 0.00 0.00 2.01
157 158 5.703730 ACCTCATATCCGGGAAAACTTTA 57.296 39.130 0.00 0.00 0.00 1.85
158 159 4.586306 ACCTCATATCCGGGAAAACTTT 57.414 40.909 0.00 0.00 0.00 2.66
159 160 4.227527 AGAACCTCATATCCGGGAAAACTT 59.772 41.667 0.00 0.00 0.00 2.66
160 161 3.780850 AGAACCTCATATCCGGGAAAACT 59.219 43.478 0.00 0.00 0.00 2.66
161 162 4.152284 AGAACCTCATATCCGGGAAAAC 57.848 45.455 0.00 0.00 0.00 2.43
162 163 4.018779 ACAAGAACCTCATATCCGGGAAAA 60.019 41.667 0.00 0.00 0.00 2.29
163 164 3.521937 ACAAGAACCTCATATCCGGGAAA 59.478 43.478 0.00 0.00 0.00 3.13
164 165 3.112263 ACAAGAACCTCATATCCGGGAA 58.888 45.455 0.00 0.00 0.00 3.97
165 166 2.759355 ACAAGAACCTCATATCCGGGA 58.241 47.619 0.00 0.00 0.00 5.14
166 167 3.118408 TCAACAAGAACCTCATATCCGGG 60.118 47.826 0.00 0.00 0.00 5.73
167 168 4.122776 CTCAACAAGAACCTCATATCCGG 58.877 47.826 0.00 0.00 0.00 5.14
168 169 3.557595 GCTCAACAAGAACCTCATATCCG 59.442 47.826 0.00 0.00 0.00 4.18
169 170 3.557595 CGCTCAACAAGAACCTCATATCC 59.442 47.826 0.00 0.00 0.00 2.59
170 171 4.433615 TCGCTCAACAAGAACCTCATATC 58.566 43.478 0.00 0.00 0.00 1.63
171 172 4.160439 TCTCGCTCAACAAGAACCTCATAT 59.840 41.667 0.00 0.00 0.00 1.78
172 173 3.509967 TCTCGCTCAACAAGAACCTCATA 59.490 43.478 0.00 0.00 0.00 2.15
173 174 2.300152 TCTCGCTCAACAAGAACCTCAT 59.700 45.455 0.00 0.00 0.00 2.90
174 175 1.686587 TCTCGCTCAACAAGAACCTCA 59.313 47.619 0.00 0.00 0.00 3.86
175 176 2.333014 CTCTCGCTCAACAAGAACCTC 58.667 52.381 0.00 0.00 0.00 3.85
176 177 1.001406 CCTCTCGCTCAACAAGAACCT 59.999 52.381 0.00 0.00 0.00 3.50
177 178 1.000955 TCCTCTCGCTCAACAAGAACC 59.999 52.381 0.00 0.00 0.00 3.62
178 179 2.333014 CTCCTCTCGCTCAACAAGAAC 58.667 52.381 0.00 0.00 0.00 3.01
179 180 1.273606 CCTCCTCTCGCTCAACAAGAA 59.726 52.381 0.00 0.00 0.00 2.52
180 181 0.891373 CCTCCTCTCGCTCAACAAGA 59.109 55.000 0.00 0.00 0.00 3.02
181 182 0.891373 TCCTCCTCTCGCTCAACAAG 59.109 55.000 0.00 0.00 0.00 3.16
182 183 0.603569 GTCCTCCTCTCGCTCAACAA 59.396 55.000 0.00 0.00 0.00 2.83
183 184 1.251527 GGTCCTCCTCTCGCTCAACA 61.252 60.000 0.00 0.00 0.00 3.33
184 185 1.513622 GGTCCTCCTCTCGCTCAAC 59.486 63.158 0.00 0.00 0.00 3.18
185 186 2.046864 CGGTCCTCCTCTCGCTCAA 61.047 63.158 0.00 0.00 0.00 3.02
186 187 2.438614 CGGTCCTCCTCTCGCTCA 60.439 66.667 0.00 0.00 0.00 4.26
187 188 2.438795 ACGGTCCTCCTCTCGCTC 60.439 66.667 0.00 0.00 0.00 5.03
188 189 2.194388 TACACGGTCCTCCTCTCGCT 62.194 60.000 0.00 0.00 0.00 4.93
189 190 1.716826 CTACACGGTCCTCCTCTCGC 61.717 65.000 0.00 0.00 0.00 5.03
190 191 0.392729 ACTACACGGTCCTCCTCTCG 60.393 60.000 0.00 0.00 0.00 4.04
191 192 1.381522 GACTACACGGTCCTCCTCTC 58.618 60.000 0.00 0.00 0.00 3.20
192 193 0.392729 CGACTACACGGTCCTCCTCT 60.393 60.000 0.00 0.00 33.07 3.69
193 194 1.375098 CCGACTACACGGTCCTCCTC 61.375 65.000 0.00 0.00 46.70 3.71
194 195 1.378250 CCGACTACACGGTCCTCCT 60.378 63.158 0.00 0.00 46.70 3.69
195 196 3.194719 CCGACTACACGGTCCTCC 58.805 66.667 0.00 0.00 46.70 4.30
202 203 4.508128 ATGGCGCCCGACTACACG 62.508 66.667 26.77 0.00 0.00 4.49
203 204 2.890474 CATGGCGCCCGACTACAC 60.890 66.667 26.77 0.00 0.00 2.90
204 205 2.949909 AACATGGCGCCCGACTACA 61.950 57.895 26.77 2.60 0.00 2.74
205 206 2.125269 AACATGGCGCCCGACTAC 60.125 61.111 26.77 0.00 0.00 2.73
206 207 2.125310 CAACATGGCGCCCGACTA 60.125 61.111 26.77 4.49 0.00 2.59
210 211 4.781959 CAAGCAACATGGCGCCCG 62.782 66.667 26.77 18.23 39.27 6.13
211 212 4.440127 CCAAGCAACATGGCGCCC 62.440 66.667 26.77 7.06 39.27 6.13
212 213 2.824071 CTTCCAAGCAACATGGCGCC 62.824 60.000 22.73 22.73 37.88 6.53
213 214 1.444895 CTTCCAAGCAACATGGCGC 60.445 57.895 0.00 0.00 37.88 6.53
214 215 1.213537 CCTTCCAAGCAACATGGCG 59.786 57.895 0.00 0.00 37.88 5.69
215 216 0.244721 GTCCTTCCAAGCAACATGGC 59.755 55.000 0.00 0.00 37.88 4.40
216 217 0.890683 GGTCCTTCCAAGCAACATGG 59.109 55.000 0.00 0.00 39.41 3.66
217 218 1.542915 CTGGTCCTTCCAAGCAACATG 59.457 52.381 0.00 0.00 46.59 3.21
218 219 1.425066 TCTGGTCCTTCCAAGCAACAT 59.575 47.619 0.00 0.00 46.59 2.71
219 220 0.843309 TCTGGTCCTTCCAAGCAACA 59.157 50.000 0.00 0.00 46.59 3.33
220 221 1.981256 TTCTGGTCCTTCCAAGCAAC 58.019 50.000 0.00 0.00 46.59 4.17
221 222 2.517959 CATTCTGGTCCTTCCAAGCAA 58.482 47.619 0.00 0.00 46.59 3.91
222 223 1.272092 CCATTCTGGTCCTTCCAAGCA 60.272 52.381 0.00 0.00 46.59 3.91
223 224 1.467920 CCATTCTGGTCCTTCCAAGC 58.532 55.000 0.00 0.00 46.59 4.01
224 225 1.467920 GCCATTCTGGTCCTTCCAAG 58.532 55.000 0.00 0.00 46.59 3.61
225 226 0.039618 GGCCATTCTGGTCCTTCCAA 59.960 55.000 0.00 0.00 46.59 3.53
226 227 1.691219 GGCCATTCTGGTCCTTCCA 59.309 57.895 0.00 0.00 45.01 3.53
227 228 4.666105 GGCCATTCTGGTCCTTCC 57.334 61.111 0.00 0.00 40.46 3.46
232 233 1.614711 TGGATGGGCCATTCTGGTC 59.385 57.895 25.05 10.14 43.33 4.02
233 234 3.854582 TGGATGGGCCATTCTGGT 58.145 55.556 25.05 0.00 43.33 4.00
245 246 5.065914 TCAAAGAAAAGTCTCCAGTGGATG 58.934 41.667 13.56 7.29 30.70 3.51
246 247 5.310409 TCAAAGAAAAGTCTCCAGTGGAT 57.690 39.130 13.56 0.00 30.70 3.41
247 248 4.708177 CTCAAAGAAAAGTCTCCAGTGGA 58.292 43.478 12.40 12.40 30.70 4.02
248 249 3.251972 GCTCAAAGAAAAGTCTCCAGTGG 59.748 47.826 1.40 1.40 30.70 4.00
249 250 3.251972 GGCTCAAAGAAAAGTCTCCAGTG 59.748 47.826 0.00 0.00 30.70 3.66
250 251 3.137360 AGGCTCAAAGAAAAGTCTCCAGT 59.863 43.478 0.00 0.00 30.70 4.00
251 252 3.749226 AGGCTCAAAGAAAAGTCTCCAG 58.251 45.455 0.00 0.00 30.70 3.86
252 253 3.864789 AGGCTCAAAGAAAAGTCTCCA 57.135 42.857 0.00 0.00 30.70 3.86
253 254 5.765677 AGTTAAGGCTCAAAGAAAAGTCTCC 59.234 40.000 0.00 0.00 30.70 3.71
254 255 6.261158 ACAGTTAAGGCTCAAAGAAAAGTCTC 59.739 38.462 0.00 0.00 30.70 3.36
255 256 6.122964 ACAGTTAAGGCTCAAAGAAAAGTCT 58.877 36.000 0.00 0.00 34.72 3.24
256 257 6.378710 ACAGTTAAGGCTCAAAGAAAAGTC 57.621 37.500 0.00 0.00 0.00 3.01
257 258 6.017026 GCTACAGTTAAGGCTCAAAGAAAAGT 60.017 38.462 0.00 0.00 0.00 2.66
258 259 6.205658 AGCTACAGTTAAGGCTCAAAGAAAAG 59.794 38.462 0.00 0.00 0.00 2.27
259 260 6.017109 CAGCTACAGTTAAGGCTCAAAGAAAA 60.017 38.462 0.00 0.00 32.30 2.29
260 261 5.470098 CAGCTACAGTTAAGGCTCAAAGAAA 59.530 40.000 0.00 0.00 32.30 2.52
261 262 4.997395 CAGCTACAGTTAAGGCTCAAAGAA 59.003 41.667 0.00 0.00 32.30 2.52
262 263 4.563580 CCAGCTACAGTTAAGGCTCAAAGA 60.564 45.833 0.00 0.00 32.30 2.52
263 264 3.686726 CCAGCTACAGTTAAGGCTCAAAG 59.313 47.826 0.00 0.00 32.30 2.77
264 265 3.326588 TCCAGCTACAGTTAAGGCTCAAA 59.673 43.478 0.00 0.00 32.30 2.69
265 266 2.903784 TCCAGCTACAGTTAAGGCTCAA 59.096 45.455 0.00 0.00 32.30 3.02
266 267 2.536066 TCCAGCTACAGTTAAGGCTCA 58.464 47.619 0.00 0.00 32.30 4.26
267 268 3.611766 TTCCAGCTACAGTTAAGGCTC 57.388 47.619 0.00 0.00 32.30 4.70
268 269 3.777522 AGATTCCAGCTACAGTTAAGGCT 59.222 43.478 0.00 0.00 35.23 4.58
269 270 4.143986 AGATTCCAGCTACAGTTAAGGC 57.856 45.455 0.00 0.00 0.00 4.35
270 271 5.734720 TGAAGATTCCAGCTACAGTTAAGG 58.265 41.667 0.00 0.00 0.00 2.69
271 272 7.672983 TTTGAAGATTCCAGCTACAGTTAAG 57.327 36.000 0.00 0.00 0.00 1.85
272 273 7.121168 CCATTTGAAGATTCCAGCTACAGTTAA 59.879 37.037 0.00 0.00 0.00 2.01
273 274 6.599244 CCATTTGAAGATTCCAGCTACAGTTA 59.401 38.462 0.00 0.00 0.00 2.24
274 275 5.416952 CCATTTGAAGATTCCAGCTACAGTT 59.583 40.000 0.00 0.00 0.00 3.16
275 276 4.946157 CCATTTGAAGATTCCAGCTACAGT 59.054 41.667 0.00 0.00 0.00 3.55
276 277 4.946157 ACCATTTGAAGATTCCAGCTACAG 59.054 41.667 0.00 0.00 0.00 2.74
277 278 4.922206 ACCATTTGAAGATTCCAGCTACA 58.078 39.130 0.00 0.00 0.00 2.74
278 279 4.943705 TGACCATTTGAAGATTCCAGCTAC 59.056 41.667 0.00 0.00 0.00 3.58
279 280 5.178096 TGACCATTTGAAGATTCCAGCTA 57.822 39.130 0.00 0.00 0.00 3.32
280 281 4.038271 TGACCATTTGAAGATTCCAGCT 57.962 40.909 0.00 0.00 0.00 4.24
281 282 4.996788 ATGACCATTTGAAGATTCCAGC 57.003 40.909 0.00 0.00 0.00 4.85
293 294 2.236893 GTCCCATGCCAAATGACCATTT 59.763 45.455 2.38 2.38 41.33 2.32
294 295 1.832998 GTCCCATGCCAAATGACCATT 59.167 47.619 0.00 0.00 0.00 3.16
295 296 1.273154 TGTCCCATGCCAAATGACCAT 60.273 47.619 0.00 0.00 0.00 3.55
296 297 0.113972 TGTCCCATGCCAAATGACCA 59.886 50.000 0.00 0.00 0.00 4.02
297 298 0.819582 CTGTCCCATGCCAAATGACC 59.180 55.000 0.00 0.00 0.00 4.02
298 299 0.819582 CCTGTCCCATGCCAAATGAC 59.180 55.000 0.00 0.00 0.00 3.06
299 300 0.324552 CCCTGTCCCATGCCAAATGA 60.325 55.000 0.00 0.00 0.00 2.57
300 301 0.615544 ACCCTGTCCCATGCCAAATG 60.616 55.000 0.00 0.00 0.00 2.32
301 302 0.324645 GACCCTGTCCCATGCCAAAT 60.325 55.000 0.00 0.00 0.00 2.32
302 303 1.076549 GACCCTGTCCCATGCCAAA 59.923 57.895 0.00 0.00 0.00 3.28
303 304 2.763215 GACCCTGTCCCATGCCAA 59.237 61.111 0.00 0.00 0.00 4.52
304 305 3.338250 GGACCCTGTCCCATGCCA 61.338 66.667 1.68 0.00 46.19 4.92
312 313 1.722636 CGCGGTAGTAGGACCCTGTC 61.723 65.000 0.00 0.00 35.95 3.51
313 314 1.751927 CGCGGTAGTAGGACCCTGT 60.752 63.158 0.00 0.00 35.95 4.00
314 315 1.722636 GACGCGGTAGTAGGACCCTG 61.723 65.000 12.47 0.00 35.95 4.45
315 316 1.452833 GACGCGGTAGTAGGACCCT 60.453 63.158 12.47 0.00 35.95 4.34
316 317 2.484928 GGACGCGGTAGTAGGACCC 61.485 68.421 12.47 0.00 35.95 4.46
317 318 2.484928 GGGACGCGGTAGTAGGACC 61.485 68.421 12.47 0.00 36.00 4.46
318 319 2.484928 GGGGACGCGGTAGTAGGAC 61.485 68.421 12.47 0.00 0.00 3.85
319 320 2.124151 GGGGACGCGGTAGTAGGA 60.124 66.667 12.47 0.00 0.00 2.94
320 321 1.831286 ATGGGGACGCGGTAGTAGG 60.831 63.158 12.47 0.00 0.00 3.18
321 322 1.362717 CATGGGGACGCGGTAGTAG 59.637 63.158 12.47 0.00 0.00 2.57
322 323 2.788640 GCATGGGGACGCGGTAGTA 61.789 63.158 12.47 0.00 0.00 1.82
323 324 4.157120 GCATGGGGACGCGGTAGT 62.157 66.667 12.47 0.00 0.00 2.73
324 325 3.792053 GAGCATGGGGACGCGGTAG 62.792 68.421 12.47 0.00 0.00 3.18
325 326 3.845259 GAGCATGGGGACGCGGTA 61.845 66.667 12.47 0.00 0.00 4.02
327 328 4.776322 TTGAGCATGGGGACGCGG 62.776 66.667 12.47 0.00 0.00 6.46
328 329 3.499737 GTTGAGCATGGGGACGCG 61.500 66.667 3.53 3.53 0.00 6.01
329 330 3.499737 CGTTGAGCATGGGGACGC 61.500 66.667 0.00 0.00 0.00 5.19
330 331 2.819595 CCGTTGAGCATGGGGACG 60.820 66.667 0.00 0.00 0.00 4.79
331 332 2.040544 CACCGTTGAGCATGGGGAC 61.041 63.158 0.00 0.00 37.05 4.46
332 333 2.350895 CACCGTTGAGCATGGGGA 59.649 61.111 0.00 0.00 37.05 4.81
333 334 3.443045 GCACCGTTGAGCATGGGG 61.443 66.667 0.00 0.00 38.16 4.96
334 335 3.803082 CGCACCGTTGAGCATGGG 61.803 66.667 0.00 0.00 35.51 4.00
335 336 4.465512 GCGCACCGTTGAGCATGG 62.466 66.667 3.35 0.00 46.97 3.66
340 341 2.542907 AACAAGGCGCACCGTTGAG 61.543 57.895 10.83 0.00 42.76 3.02
341 342 2.515057 AACAAGGCGCACCGTTGA 60.515 55.556 10.83 0.00 42.76 3.18
342 343 2.353376 CAACAAGGCGCACCGTTG 60.353 61.111 10.83 14.82 42.76 4.10
343 344 3.591835 CCAACAAGGCGCACCGTT 61.592 61.111 10.83 5.66 42.76 4.44
344 345 3.842925 ATCCAACAAGGCGCACCGT 62.843 57.895 10.83 0.00 42.76 4.83
345 346 3.039202 GATCCAACAAGGCGCACCG 62.039 63.158 10.83 0.00 42.76 4.94
346 347 2.877691 GATCCAACAAGGCGCACC 59.122 61.111 10.83 0.00 37.29 5.01
347 348 1.573829 TTCGATCCAACAAGGCGCAC 61.574 55.000 10.83 0.00 37.29 5.34
348 349 1.298157 CTTCGATCCAACAAGGCGCA 61.298 55.000 10.83 0.00 37.29 6.09
349 350 1.019278 TCTTCGATCCAACAAGGCGC 61.019 55.000 0.00 0.00 37.29 6.53
350 351 1.328680 CATCTTCGATCCAACAAGGCG 59.671 52.381 0.00 0.00 37.29 5.52
351 352 2.359900 ACATCTTCGATCCAACAAGGC 58.640 47.619 0.00 0.00 37.29 4.35
352 353 3.127548 CCAACATCTTCGATCCAACAAGG 59.872 47.826 0.00 0.00 39.47 3.61
353 354 3.753272 ACCAACATCTTCGATCCAACAAG 59.247 43.478 0.00 0.00 0.00 3.16
354 355 3.750371 ACCAACATCTTCGATCCAACAA 58.250 40.909 0.00 0.00 0.00 2.83
355 356 3.417069 ACCAACATCTTCGATCCAACA 57.583 42.857 0.00 0.00 0.00 3.33
356 357 3.181520 CGAACCAACATCTTCGATCCAAC 60.182 47.826 0.00 0.00 41.47 3.77
357 358 3.000041 CGAACCAACATCTTCGATCCAA 59.000 45.455 0.00 0.00 41.47 3.53
358 359 2.232696 TCGAACCAACATCTTCGATCCA 59.767 45.455 0.00 0.00 42.47 3.41
359 360 2.860735 CTCGAACCAACATCTTCGATCC 59.139 50.000 3.20 0.00 45.30 3.36
360 361 2.282820 GCTCGAACCAACATCTTCGATC 59.717 50.000 3.20 0.00 45.30 3.69
361 362 2.093973 AGCTCGAACCAACATCTTCGAT 60.094 45.455 3.20 0.00 45.30 3.59
362 363 1.272490 AGCTCGAACCAACATCTTCGA 59.728 47.619 2.81 2.81 44.50 3.71
363 364 1.714794 AGCTCGAACCAACATCTTCG 58.285 50.000 0.00 0.00 40.52 3.79
364 365 3.851098 AGTAGCTCGAACCAACATCTTC 58.149 45.455 0.00 0.00 0.00 2.87
365 366 3.963428 AGTAGCTCGAACCAACATCTT 57.037 42.857 0.00 0.00 0.00 2.40
366 367 3.511934 AGAAGTAGCTCGAACCAACATCT 59.488 43.478 0.00 0.00 0.00 2.90
367 368 3.851098 AGAAGTAGCTCGAACCAACATC 58.149 45.455 0.00 0.00 0.00 3.06
368 369 3.851098 GAGAAGTAGCTCGAACCAACAT 58.149 45.455 0.00 0.00 0.00 2.71
395 396 3.570212 ATAGCCCCGGATGCCCAC 61.570 66.667 0.73 0.00 0.00 4.61
396 397 2.974435 TACATAGCCCCGGATGCCCA 62.974 60.000 0.73 0.00 0.00 5.36
452 453 1.792949 CTGTGTCGTCCCGAAAAGAAG 59.207 52.381 0.00 0.00 37.72 2.85
469 470 0.977395 GTACTCCCCACTCAAGCTGT 59.023 55.000 0.00 0.00 0.00 4.40
482 483 1.303799 TGACTCGGTGCTCGTACTCC 61.304 60.000 0.00 0.00 40.32 3.85
487 488 0.597637 CTTGTTGACTCGGTGCTCGT 60.598 55.000 0.54 0.00 40.32 4.18
527 528 2.664518 GCTCATCTAGGCTGCCGC 60.665 66.667 13.96 4.77 0.00 6.53
528 529 1.300775 CTGCTCATCTAGGCTGCCG 60.301 63.158 13.96 0.00 0.00 5.69
576 2814 1.959226 CCCTCAAACGGACCGTGTG 60.959 63.158 28.23 28.23 45.31 3.82
579 2817 3.633116 CCCCCTCAAACGGACCGT 61.633 66.667 15.37 15.37 43.97 4.83
580 2818 2.666098 ATCCCCCTCAAACGGACCG 61.666 63.158 13.61 13.61 0.00 4.79
581 2819 1.077716 CATCCCCCTCAAACGGACC 60.078 63.158 0.00 0.00 0.00 4.46
582 2820 0.107654 CTCATCCCCCTCAAACGGAC 60.108 60.000 0.00 0.00 0.00 4.79
583 2821 0.546747 ACTCATCCCCCTCAAACGGA 60.547 55.000 0.00 0.00 0.00 4.69
585 2823 1.453155 CAACTCATCCCCCTCAAACG 58.547 55.000 0.00 0.00 0.00 3.60
586 2824 1.177401 GCAACTCATCCCCCTCAAAC 58.823 55.000 0.00 0.00 0.00 2.93
587 2825 1.075601 AGCAACTCATCCCCCTCAAA 58.924 50.000 0.00 0.00 0.00 2.69
588 2826 1.075601 AAGCAACTCATCCCCCTCAA 58.924 50.000 0.00 0.00 0.00 3.02
589 2827 1.004745 GAAAGCAACTCATCCCCCTCA 59.995 52.381 0.00 0.00 0.00 3.86
594 3454 4.789012 TTTGATGAAAGCAACTCATCCC 57.211 40.909 15.85 0.00 44.81 3.85
677 3543 1.675641 GGCTGCGTTCATCTGGGTT 60.676 57.895 0.00 0.00 0.00 4.11
678 3544 2.045926 GGCTGCGTTCATCTGGGT 60.046 61.111 0.00 0.00 0.00 4.51
680 3546 2.825836 GGGGCTGCGTTCATCTGG 60.826 66.667 0.00 0.00 0.00 3.86
701 3567 5.047377 TGGTGGAAATTTAGACCAATTGAGC 60.047 40.000 15.35 0.00 35.51 4.26
707 3573 4.079253 GCTCTGGTGGAAATTTAGACCAA 58.921 43.478 17.39 10.31 38.02 3.67
724 3594 1.337917 TGCTTCTTCTGCTCTGCTCTG 60.338 52.381 0.00 0.00 0.00 3.35
725 3595 0.975135 TGCTTCTTCTGCTCTGCTCT 59.025 50.000 0.00 0.00 0.00 4.09
750 3624 2.104963 ACTTGGTTGAGGAACAGAGGAC 59.895 50.000 0.00 0.00 33.27 3.85
761 3635 3.181497 CCTTGTGTGTTGACTTGGTTGAG 60.181 47.826 0.00 0.00 0.00 3.02
762 3636 2.752354 CCTTGTGTGTTGACTTGGTTGA 59.248 45.455 0.00 0.00 0.00 3.18
763 3637 2.752354 TCCTTGTGTGTTGACTTGGTTG 59.248 45.455 0.00 0.00 0.00 3.77
764 3638 3.080300 TCCTTGTGTGTTGACTTGGTT 57.920 42.857 0.00 0.00 0.00 3.67
765 3639 2.799126 TCCTTGTGTGTTGACTTGGT 57.201 45.000 0.00 0.00 0.00 3.67
858 3760 5.599732 CTGCTCATATATAGTGATGGGAGC 58.400 45.833 9.38 9.38 44.95 4.70
876 3792 1.220477 GGGAGAAGGTCTGCTGCTC 59.780 63.158 0.00 0.00 35.01 4.26
878 3839 0.037447 AAAGGGAGAAGGTCTGCTGC 59.963 55.000 0.00 0.00 35.01 5.25
879 3840 1.627834 AGAAAGGGAGAAGGTCTGCTG 59.372 52.381 0.00 0.00 35.01 4.41
1008 3989 0.109086 TTCGAGCGCTGGAAGAAGAG 60.109 55.000 28.07 2.92 34.07 2.85
1321 4327 4.970860 AACTATCAGCCAGTGAGCATAT 57.029 40.909 6.40 2.52 39.07 1.78
1330 4379 3.341823 AGCAGAACAAACTATCAGCCAG 58.658 45.455 0.00 0.00 0.00 4.85
1334 4383 5.112220 TGCAAAGCAGAACAAACTATCAG 57.888 39.130 0.00 0.00 33.32 2.90
1350 4414 8.230486 CCTGTACAACTATCTTTTACTGCAAAG 58.770 37.037 0.00 0.00 35.39 2.77
1360 4424 9.877178 CTCTAACAATCCTGTACAACTATCTTT 57.123 33.333 0.00 0.00 33.45 2.52
1408 4488 9.238368 ACGAAAGAATGAAGGTATAATTTTGGA 57.762 29.630 0.00 0.00 0.00 3.53
1486 4584 8.180267 GGTGAGTATGAACAATCAATTCTTCAG 58.820 37.037 1.06 0.00 39.49 3.02
1617 4726 2.096220 TGTAAGAATGGCGGCGTTAA 57.904 45.000 17.28 2.73 0.00 2.01
1621 4730 0.304705 GTCATGTAAGAATGGCGGCG 59.695 55.000 0.51 0.51 0.00 6.46
1640 4750 3.056107 TCCCACTGAGTTAGGTCAATTCG 60.056 47.826 0.00 0.00 0.00 3.34
1653 4763 2.887152 CCTTCACCTTTTTCCCACTGAG 59.113 50.000 0.00 0.00 0.00 3.35
1659 4769 5.106277 CGAACTATTCCTTCACCTTTTTCCC 60.106 44.000 0.00 0.00 0.00 3.97
1706 4827 1.196127 GTTCTAAAAACCCAGCCGACG 59.804 52.381 0.00 0.00 0.00 5.12
1708 4829 1.878948 CGGTTCTAAAAACCCAGCCGA 60.879 52.381 1.54 0.00 40.27 5.54
1721 4842 1.209504 CCAATCCTGGAAGCGGTTCTA 59.790 52.381 25.05 19.23 46.92 2.10
1722 4843 0.035056 CCAATCCTGGAAGCGGTTCT 60.035 55.000 25.05 3.77 46.92 3.01
1734 4855 2.231380 AAGACCGCCACCCAATCCT 61.231 57.895 0.00 0.00 0.00 3.24
1735 4856 2.046285 CAAGACCGCCACCCAATCC 61.046 63.158 0.00 0.00 0.00 3.01
1743 4864 3.939939 TGCAGAGCAAGACCGCCA 61.940 61.111 0.00 0.00 34.76 5.69
1866 4988 4.132122 ACCCCTTGAAGTGGATCAATTT 57.868 40.909 0.00 0.00 38.55 1.82
1891 5013 4.645588 AGGTTGTGTCTAGTAGCTGTATCC 59.354 45.833 0.00 0.00 0.00 2.59
1893 5015 6.607004 AAAGGTTGTGTCTAGTAGCTGTAT 57.393 37.500 0.00 0.00 0.00 2.29
1894 5016 6.220930 CAAAAGGTTGTGTCTAGTAGCTGTA 58.779 40.000 0.00 0.00 0.00 2.74
1895 5017 4.957684 AAAGGTTGTGTCTAGTAGCTGT 57.042 40.909 0.00 0.00 0.00 4.40
1896 5018 4.083802 GCAAAAGGTTGTGTCTAGTAGCTG 60.084 45.833 0.00 0.00 37.06 4.24
1897 5019 4.065789 GCAAAAGGTTGTGTCTAGTAGCT 58.934 43.478 0.00 0.00 37.06 3.32
2014 5137 8.777413 CCGAATGATTTAAGAATGATAGCAAGA 58.223 33.333 0.00 0.00 0.00 3.02
2095 5218 1.771854 TCAAGGTCTAACTGGCCACAA 59.228 47.619 0.00 0.00 44.59 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.