Multiple sequence alignment - TraesCS2B01G566200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G566200 chr2B 100.000 2549 0 0 1 2549 757362201 757364749 0 4708
1 TraesCS2B01G566200 chr2B 97.187 1991 38 8 562 2549 776222962 776224937 0 3350
2 TraesCS2B01G566200 chr2B 97.097 1998 38 10 555 2549 781094236 781096216 0 3350
3 TraesCS2B01G566200 chr2B 96.750 2000 43 10 557 2549 788228852 788230836 0 3314
4 TraesCS2B01G566200 chr2B 96.678 1987 47 8 553 2535 4739868 4741839 0 3286
5 TraesCS2B01G566200 chr6A 97.388 1991 37 5 561 2549 617222870 617220893 0 3374
6 TraesCS2B01G566200 chr6A 97.050 2000 43 6 553 2549 533982332 533980346 0 3352
7 TraesCS2B01G566200 chr6B 97.289 1992 38 6 561 2549 30026527 30028505 0 3365
8 TraesCS2B01G566200 chr4A 97.186 1990 42 4 562 2549 36562913 36564890 0 3352
9 TraesCS2B01G566200 chr4A 96.631 1989 46 8 554 2535 661625053 661623079 0 3282
10 TraesCS2B01G566200 chr4B 97.139 1992 37 9 562 2549 368430367 368428392 0 3345
11 TraesCS2B01G566200 chr3A 97.137 1991 38 10 562 2549 54951918 54953892 0 3343
12 TraesCS2B01G566200 chr3A 96.991 1994 40 9 561 2549 9952657 9954635 0 3332
13 TraesCS2B01G566200 chr3A 96.895 1997 43 8 557 2549 77771310 77773291 0 3326
14 TraesCS2B01G566200 chr1B 97.085 1990 42 6 562 2549 42162338 42160363 0 3339
15 TraesCS2B01G566200 chr5B 96.988 1992 44 5 562 2549 185022644 185024623 0 3332
16 TraesCS2B01G566200 chr7B 96.700 2000 44 9 554 2549 743805897 743807878 0 3308
17 TraesCS2B01G566200 chr7B 90.955 1194 66 11 541 1725 734145266 734146426 0 1568
18 TraesCS2B01G566200 chr2A 97.055 1732 37 6 557 2286 613866453 613868172 0 2904


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G566200 chr2B 757362201 757364749 2548 False 4708 4708 100.000 1 2549 1 chr2B.!!$F2 2548
1 TraesCS2B01G566200 chr2B 776222962 776224937 1975 False 3350 3350 97.187 562 2549 1 chr2B.!!$F3 1987
2 TraesCS2B01G566200 chr2B 781094236 781096216 1980 False 3350 3350 97.097 555 2549 1 chr2B.!!$F4 1994
3 TraesCS2B01G566200 chr2B 788228852 788230836 1984 False 3314 3314 96.750 557 2549 1 chr2B.!!$F5 1992
4 TraesCS2B01G566200 chr2B 4739868 4741839 1971 False 3286 3286 96.678 553 2535 1 chr2B.!!$F1 1982
5 TraesCS2B01G566200 chr6A 617220893 617222870 1977 True 3374 3374 97.388 561 2549 1 chr6A.!!$R2 1988
6 TraesCS2B01G566200 chr6A 533980346 533982332 1986 True 3352 3352 97.050 553 2549 1 chr6A.!!$R1 1996
7 TraesCS2B01G566200 chr6B 30026527 30028505 1978 False 3365 3365 97.289 561 2549 1 chr6B.!!$F1 1988
8 TraesCS2B01G566200 chr4A 36562913 36564890 1977 False 3352 3352 97.186 562 2549 1 chr4A.!!$F1 1987
9 TraesCS2B01G566200 chr4A 661623079 661625053 1974 True 3282 3282 96.631 554 2535 1 chr4A.!!$R1 1981
10 TraesCS2B01G566200 chr4B 368428392 368430367 1975 True 3345 3345 97.139 562 2549 1 chr4B.!!$R1 1987
11 TraesCS2B01G566200 chr3A 54951918 54953892 1974 False 3343 3343 97.137 562 2549 1 chr3A.!!$F2 1987
12 TraesCS2B01G566200 chr3A 9952657 9954635 1978 False 3332 3332 96.991 561 2549 1 chr3A.!!$F1 1988
13 TraesCS2B01G566200 chr3A 77771310 77773291 1981 False 3326 3326 96.895 557 2549 1 chr3A.!!$F3 1992
14 TraesCS2B01G566200 chr1B 42160363 42162338 1975 True 3339 3339 97.085 562 2549 1 chr1B.!!$R1 1987
15 TraesCS2B01G566200 chr5B 185022644 185024623 1979 False 3332 3332 96.988 562 2549 1 chr5B.!!$F1 1987
16 TraesCS2B01G566200 chr7B 743805897 743807878 1981 False 3308 3308 96.700 554 2549 1 chr7B.!!$F2 1995
17 TraesCS2B01G566200 chr7B 734145266 734146426 1160 False 1568 1568 90.955 541 1725 1 chr7B.!!$F1 1184
18 TraesCS2B01G566200 chr2A 613866453 613868172 1719 False 2904 2904 97.055 557 2286 1 chr2A.!!$F1 1729


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.037697 TTGGCAGAAGTATGACGCGT 60.038 50.0 13.85 13.85 0.0 6.01 F
101 102 0.247301 GCGTGCGTACATCTGCTTTC 60.247 55.0 4.09 0.00 0.0 2.62 F
102 103 0.370273 CGTGCGTACATCTGCTTTCC 59.630 55.0 4.09 0.00 0.0 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1381 1389 0.104855 TCTCTGTCAGTGCGTGCTTT 59.895 50.000 0.0 0.0 0.00 3.51 R
1426 1437 4.899502 TCAAGCTTCCTAACCTTCTTCTG 58.100 43.478 0.0 0.0 0.00 3.02 R
2306 2333 0.865111 TGCAAACATTCACGGTCTCG 59.135 50.000 0.0 0.0 43.02 4.04 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.183478 AATCGTGTTGCACCTGATCA 57.817 45.000 0.00 0.00 0.00 2.92
20 21 2.408271 ATCGTGTTGCACCTGATCAT 57.592 45.000 0.00 0.00 0.00 2.45
21 22 1.441738 TCGTGTTGCACCTGATCATG 58.558 50.000 0.00 0.00 0.00 3.07
22 23 1.159285 CGTGTTGCACCTGATCATGT 58.841 50.000 0.00 0.00 0.00 3.21
24 25 2.938451 CGTGTTGCACCTGATCATGTAT 59.062 45.455 3.11 0.00 0.00 2.29
25 26 3.242511 CGTGTTGCACCTGATCATGTATG 60.243 47.826 3.11 0.00 0.00 2.39
26 27 3.940852 GTGTTGCACCTGATCATGTATGA 59.059 43.478 3.11 0.00 41.70 2.15
27 28 4.034858 GTGTTGCACCTGATCATGTATGAG 59.965 45.833 3.11 0.00 40.64 2.90
28 29 4.194640 GTTGCACCTGATCATGTATGAGT 58.805 43.478 3.11 0.00 40.64 3.41
29 30 4.492494 TGCACCTGATCATGTATGAGTT 57.508 40.909 3.11 0.00 40.64 3.01
30 31 4.847198 TGCACCTGATCATGTATGAGTTT 58.153 39.130 3.11 0.00 40.64 2.66
31 32 4.637091 TGCACCTGATCATGTATGAGTTTG 59.363 41.667 3.11 0.00 40.64 2.93
32 33 4.637534 GCACCTGATCATGTATGAGTTTGT 59.362 41.667 3.11 0.00 40.64 2.83
33 34 5.448225 GCACCTGATCATGTATGAGTTTGTG 60.448 44.000 3.11 6.80 40.64 3.33
34 35 5.876460 CACCTGATCATGTATGAGTTTGTGA 59.124 40.000 3.11 0.00 40.64 3.58
35 36 6.036844 CACCTGATCATGTATGAGTTTGTGAG 59.963 42.308 3.11 0.00 40.64 3.51
36 37 5.526479 CCTGATCATGTATGAGTTTGTGAGG 59.474 44.000 0.00 0.00 40.64 3.86
37 38 6.053632 TGATCATGTATGAGTTTGTGAGGT 57.946 37.500 0.00 0.00 40.64 3.85
38 39 5.876460 TGATCATGTATGAGTTTGTGAGGTG 59.124 40.000 0.00 0.00 40.64 4.00
39 40 5.227569 TCATGTATGAGTTTGTGAGGTGT 57.772 39.130 0.00 0.00 32.11 4.16
40 41 6.353404 TCATGTATGAGTTTGTGAGGTGTA 57.647 37.500 0.00 0.00 32.11 2.90
41 42 6.946340 TCATGTATGAGTTTGTGAGGTGTAT 58.054 36.000 0.00 0.00 32.11 2.29
42 43 8.073467 TCATGTATGAGTTTGTGAGGTGTATA 57.927 34.615 0.00 0.00 32.11 1.47
43 44 7.979537 TCATGTATGAGTTTGTGAGGTGTATAC 59.020 37.037 0.00 0.00 32.11 1.47
44 45 7.234661 TGTATGAGTTTGTGAGGTGTATACA 57.765 36.000 0.08 0.08 0.00 2.29
45 46 7.672240 TGTATGAGTTTGTGAGGTGTATACAA 58.328 34.615 7.25 0.00 32.93 2.41
46 47 7.601130 TGTATGAGTTTGTGAGGTGTATACAAC 59.399 37.037 13.28 13.28 34.38 3.32
48 49 7.292713 TGAGTTTGTGAGGTGTATACAACTA 57.707 36.000 23.26 5.57 45.35 2.24
49 50 7.903145 TGAGTTTGTGAGGTGTATACAACTAT 58.097 34.615 23.26 2.56 45.35 2.12
50 51 7.817478 TGAGTTTGTGAGGTGTATACAACTATG 59.183 37.037 23.26 0.00 45.35 2.23
51 52 6.594159 AGTTTGTGAGGTGTATACAACTATGC 59.406 38.462 23.26 15.62 45.35 3.14
52 53 5.669164 TGTGAGGTGTATACAACTATGCA 57.331 39.130 23.26 17.77 45.35 3.96
53 54 6.233905 TGTGAGGTGTATACAACTATGCAT 57.766 37.500 23.26 3.79 45.35 3.96
54 55 6.649155 TGTGAGGTGTATACAACTATGCATT 58.351 36.000 23.26 0.00 45.35 3.56
55 56 7.109501 TGTGAGGTGTATACAACTATGCATTT 58.890 34.615 23.26 0.00 45.35 2.32
56 57 7.609918 TGTGAGGTGTATACAACTATGCATTTT 59.390 33.333 23.26 0.00 45.35 1.82
57 58 8.458843 GTGAGGTGTATACAACTATGCATTTTT 58.541 33.333 23.26 0.00 45.35 1.94
80 81 6.662865 TTTTCCATTTTGGCAGAAGTATGA 57.337 33.333 0.00 0.00 37.47 2.15
81 82 5.643379 TTCCATTTTGGCAGAAGTATGAC 57.357 39.130 0.00 0.00 37.47 3.06
82 83 3.689161 TCCATTTTGGCAGAAGTATGACG 59.311 43.478 0.00 0.00 37.47 4.35
83 84 3.429085 CATTTTGGCAGAAGTATGACGC 58.571 45.455 0.00 0.00 0.00 5.19
84 85 1.075542 TTTGGCAGAAGTATGACGCG 58.924 50.000 3.53 3.53 0.00 6.01
85 86 0.037697 TTGGCAGAAGTATGACGCGT 60.038 50.000 13.85 13.85 0.00 6.01
86 87 0.735978 TGGCAGAAGTATGACGCGTG 60.736 55.000 20.70 0.00 0.00 5.34
87 88 1.345176 GCAGAAGTATGACGCGTGC 59.655 57.895 20.70 6.64 0.00 5.34
88 89 1.625870 CAGAAGTATGACGCGTGCG 59.374 57.895 20.70 13.39 46.03 5.34
98 99 2.880879 CGCGTGCGTACATCTGCT 60.881 61.111 6.00 0.00 34.35 4.24
99 100 2.444624 CGCGTGCGTACATCTGCTT 61.445 57.895 6.00 0.00 34.35 3.91
100 101 1.787847 GCGTGCGTACATCTGCTTT 59.212 52.632 4.09 0.00 0.00 3.51
101 102 0.247301 GCGTGCGTACATCTGCTTTC 60.247 55.000 4.09 0.00 0.00 2.62
102 103 0.370273 CGTGCGTACATCTGCTTTCC 59.630 55.000 4.09 0.00 0.00 3.13
103 104 1.438651 GTGCGTACATCTGCTTTCCA 58.561 50.000 0.00 0.00 0.00 3.53
104 105 1.804151 GTGCGTACATCTGCTTTCCAA 59.196 47.619 0.00 0.00 0.00 3.53
105 106 2.225491 GTGCGTACATCTGCTTTCCAAA 59.775 45.455 0.00 0.00 0.00 3.28
106 107 3.081061 TGCGTACATCTGCTTTCCAAAT 58.919 40.909 0.00 0.00 0.00 2.32
107 108 3.505680 TGCGTACATCTGCTTTCCAAATT 59.494 39.130 0.00 0.00 0.00 1.82
108 109 4.697828 TGCGTACATCTGCTTTCCAAATTA 59.302 37.500 0.00 0.00 0.00 1.40
109 110 5.356751 TGCGTACATCTGCTTTCCAAATTAT 59.643 36.000 0.00 0.00 0.00 1.28
110 111 6.540551 TGCGTACATCTGCTTTCCAAATTATA 59.459 34.615 0.00 0.00 0.00 0.98
111 112 7.228507 TGCGTACATCTGCTTTCCAAATTATAT 59.771 33.333 0.00 0.00 0.00 0.86
112 113 7.535258 GCGTACATCTGCTTTCCAAATTATATG 59.465 37.037 0.00 0.00 0.00 1.78
113 114 8.773645 CGTACATCTGCTTTCCAAATTATATGA 58.226 33.333 0.00 0.00 0.00 2.15
119 120 9.208022 TCTGCTTTCCAAATTATATGATACTCG 57.792 33.333 0.00 0.00 0.00 4.18
120 121 8.902540 TGCTTTCCAAATTATATGATACTCGT 57.097 30.769 0.00 0.00 0.00 4.18
121 122 9.337396 TGCTTTCCAAATTATATGATACTCGTT 57.663 29.630 0.00 0.00 0.00 3.85
130 131 9.503399 AATTATATGATACTCGTTTCTTTCCCC 57.497 33.333 0.00 0.00 0.00 4.81
131 132 3.241067 TGATACTCGTTTCTTTCCCCG 57.759 47.619 0.00 0.00 0.00 5.73
132 133 2.827322 TGATACTCGTTTCTTTCCCCGA 59.173 45.455 0.00 0.00 0.00 5.14
133 134 3.258872 TGATACTCGTTTCTTTCCCCGAA 59.741 43.478 0.00 0.00 0.00 4.30
134 135 2.853235 ACTCGTTTCTTTCCCCGAAT 57.147 45.000 0.00 0.00 0.00 3.34
135 136 3.967332 ACTCGTTTCTTTCCCCGAATA 57.033 42.857 0.00 0.00 0.00 1.75
136 137 3.858247 ACTCGTTTCTTTCCCCGAATAG 58.142 45.455 0.00 0.00 0.00 1.73
137 138 3.260128 ACTCGTTTCTTTCCCCGAATAGT 59.740 43.478 0.00 0.00 0.00 2.12
138 139 3.853475 TCGTTTCTTTCCCCGAATAGTC 58.147 45.455 0.00 0.00 0.00 2.59
154 155 7.783276 CGAATAGTCGGAAATCTGTAGTATG 57.217 40.000 4.32 0.00 43.81 2.39
155 156 7.361127 CGAATAGTCGGAAATCTGTAGTATGT 58.639 38.462 4.32 0.00 43.81 2.29
156 157 7.861372 CGAATAGTCGGAAATCTGTAGTATGTT 59.139 37.037 4.32 0.00 43.81 2.71
161 162 9.352191 AGTCGGAAATCTGTAGTATGTTATAGT 57.648 33.333 0.00 0.00 0.00 2.12
162 163 9.962783 GTCGGAAATCTGTAGTATGTTATAGTT 57.037 33.333 0.00 0.00 0.00 2.24
175 176 8.429641 AGTATGTTATAGTTTGTATGGGAGTGG 58.570 37.037 0.00 0.00 0.00 4.00
176 177 6.630203 TGTTATAGTTTGTATGGGAGTGGT 57.370 37.500 0.00 0.00 0.00 4.16
177 178 7.736881 TGTTATAGTTTGTATGGGAGTGGTA 57.263 36.000 0.00 0.00 0.00 3.25
178 179 8.148437 TGTTATAGTTTGTATGGGAGTGGTAA 57.852 34.615 0.00 0.00 0.00 2.85
179 180 8.604184 TGTTATAGTTTGTATGGGAGTGGTAAA 58.396 33.333 0.00 0.00 0.00 2.01
180 181 8.886719 GTTATAGTTTGTATGGGAGTGGTAAAC 58.113 37.037 0.00 0.00 0.00 2.01
181 182 5.578157 AGTTTGTATGGGAGTGGTAAACT 57.422 39.130 0.00 0.00 43.85 2.66
182 183 5.948842 AGTTTGTATGGGAGTGGTAAACTT 58.051 37.500 0.00 0.00 40.07 2.66
183 184 5.768164 AGTTTGTATGGGAGTGGTAAACTTG 59.232 40.000 0.00 0.00 40.07 3.16
184 185 4.986054 TGTATGGGAGTGGTAAACTTGT 57.014 40.909 0.00 0.00 40.07 3.16
185 186 5.313280 TGTATGGGAGTGGTAAACTTGTT 57.687 39.130 0.00 0.00 40.07 2.83
186 187 5.067273 TGTATGGGAGTGGTAAACTTGTTG 58.933 41.667 0.00 0.00 40.07 3.33
187 188 3.655615 TGGGAGTGGTAAACTTGTTGT 57.344 42.857 0.00 0.00 40.07 3.32
188 189 4.774660 TGGGAGTGGTAAACTTGTTGTA 57.225 40.909 0.00 0.00 40.07 2.41
189 190 5.113446 TGGGAGTGGTAAACTTGTTGTAA 57.887 39.130 0.00 0.00 40.07 2.41
190 191 4.883006 TGGGAGTGGTAAACTTGTTGTAAC 59.117 41.667 0.00 0.00 40.07 2.50
191 192 5.128205 GGGAGTGGTAAACTTGTTGTAACT 58.872 41.667 0.00 0.00 40.07 2.24
192 193 5.008316 GGGAGTGGTAAACTTGTTGTAACTG 59.992 44.000 0.00 0.00 40.07 3.16
193 194 5.494632 AGTGGTAAACTTGTTGTAACTGC 57.505 39.130 0.00 0.00 34.57 4.40
194 195 5.190677 AGTGGTAAACTTGTTGTAACTGCT 58.809 37.500 0.00 0.00 34.57 4.24
195 196 6.350906 AGTGGTAAACTTGTTGTAACTGCTA 58.649 36.000 0.00 0.00 34.57 3.49
196 197 6.996282 AGTGGTAAACTTGTTGTAACTGCTAT 59.004 34.615 0.00 0.00 34.57 2.97
197 198 8.152246 AGTGGTAAACTTGTTGTAACTGCTATA 58.848 33.333 0.00 0.00 34.57 1.31
198 199 8.440833 GTGGTAAACTTGTTGTAACTGCTATAG 58.559 37.037 0.00 0.00 0.00 1.31
199 200 7.118680 TGGTAAACTTGTTGTAACTGCTATAGC 59.881 37.037 18.18 18.18 42.50 2.97
200 201 6.496338 AAACTTGTTGTAACTGCTATAGCC 57.504 37.500 21.84 6.62 41.18 3.93
201 202 5.422214 ACTTGTTGTAACTGCTATAGCCT 57.578 39.130 21.84 9.03 41.18 4.58
202 203 5.178797 ACTTGTTGTAACTGCTATAGCCTG 58.821 41.667 21.84 16.18 41.18 4.85
203 204 4.819105 TGTTGTAACTGCTATAGCCTGT 57.181 40.909 21.84 16.80 41.18 4.00
204 205 5.925506 TGTTGTAACTGCTATAGCCTGTA 57.074 39.130 21.84 8.09 41.18 2.74
205 206 6.288941 TGTTGTAACTGCTATAGCCTGTAA 57.711 37.500 21.84 9.26 41.18 2.41
206 207 6.884832 TGTTGTAACTGCTATAGCCTGTAAT 58.115 36.000 21.84 9.23 41.18 1.89
207 208 6.984474 TGTTGTAACTGCTATAGCCTGTAATC 59.016 38.462 21.84 13.28 41.18 1.75
208 209 6.978674 TGTAACTGCTATAGCCTGTAATCT 57.021 37.500 21.84 8.30 41.18 2.40
209 210 6.749139 TGTAACTGCTATAGCCTGTAATCTG 58.251 40.000 21.84 3.86 41.18 2.90
210 211 5.878406 AACTGCTATAGCCTGTAATCTGT 57.122 39.130 21.84 2.64 41.18 3.41
211 212 5.878406 ACTGCTATAGCCTGTAATCTGTT 57.122 39.130 21.84 0.00 41.18 3.16
212 213 6.240549 ACTGCTATAGCCTGTAATCTGTTT 57.759 37.500 21.84 0.00 41.18 2.83
213 214 6.284459 ACTGCTATAGCCTGTAATCTGTTTC 58.716 40.000 21.84 0.00 41.18 2.78
214 215 5.611374 TGCTATAGCCTGTAATCTGTTTCC 58.389 41.667 21.84 0.00 41.18 3.13
215 216 4.998033 GCTATAGCCTGTAATCTGTTTCCC 59.002 45.833 14.13 0.00 34.31 3.97
216 217 2.403252 AGCCTGTAATCTGTTTCCCG 57.597 50.000 0.00 0.00 0.00 5.14
217 218 1.628846 AGCCTGTAATCTGTTTCCCGT 59.371 47.619 0.00 0.00 0.00 5.28
218 219 1.737793 GCCTGTAATCTGTTTCCCGTG 59.262 52.381 0.00 0.00 0.00 4.94
219 220 2.874457 GCCTGTAATCTGTTTCCCGTGT 60.874 50.000 0.00 0.00 0.00 4.49
220 221 3.408634 CCTGTAATCTGTTTCCCGTGTT 58.591 45.455 0.00 0.00 0.00 3.32
221 222 3.818773 CCTGTAATCTGTTTCCCGTGTTT 59.181 43.478 0.00 0.00 0.00 2.83
222 223 4.277423 CCTGTAATCTGTTTCCCGTGTTTT 59.723 41.667 0.00 0.00 0.00 2.43
223 224 5.221165 CCTGTAATCTGTTTCCCGTGTTTTT 60.221 40.000 0.00 0.00 0.00 1.94
224 225 6.016943 CCTGTAATCTGTTTCCCGTGTTTTTA 60.017 38.462 0.00 0.00 0.00 1.52
225 226 6.961576 TGTAATCTGTTTCCCGTGTTTTTAG 58.038 36.000 0.00 0.00 0.00 1.85
226 227 6.766944 TGTAATCTGTTTCCCGTGTTTTTAGA 59.233 34.615 0.00 0.00 0.00 2.10
227 228 5.684550 ATCTGTTTCCCGTGTTTTTAGAC 57.315 39.130 0.00 0.00 0.00 2.59
228 229 4.515361 TCTGTTTCCCGTGTTTTTAGACA 58.485 39.130 0.00 0.00 0.00 3.41
229 230 4.942483 TCTGTTTCCCGTGTTTTTAGACAA 59.058 37.500 0.00 0.00 0.00 3.18
230 231 5.591067 TCTGTTTCCCGTGTTTTTAGACAAT 59.409 36.000 0.00 0.00 0.00 2.71
231 232 6.095720 TCTGTTTCCCGTGTTTTTAGACAATT 59.904 34.615 0.00 0.00 0.00 2.32
232 233 7.282675 TCTGTTTCCCGTGTTTTTAGACAATTA 59.717 33.333 0.00 0.00 0.00 1.40
233 234 7.194962 TGTTTCCCGTGTTTTTAGACAATTAC 58.805 34.615 0.00 0.00 0.00 1.89
234 235 7.067251 TGTTTCCCGTGTTTTTAGACAATTACT 59.933 33.333 0.00 0.00 0.00 2.24
235 236 6.548441 TCCCGTGTTTTTAGACAATTACTG 57.452 37.500 0.00 0.00 0.00 2.74
236 237 6.056884 TCCCGTGTTTTTAGACAATTACTGT 58.943 36.000 0.00 0.00 42.61 3.55
237 238 6.543100 TCCCGTGTTTTTAGACAATTACTGTT 59.457 34.615 0.00 0.00 38.84 3.16
238 239 7.067251 TCCCGTGTTTTTAGACAATTACTGTTT 59.933 33.333 0.00 0.00 38.84 2.83
239 240 7.703197 CCCGTGTTTTTAGACAATTACTGTTTT 59.297 33.333 0.00 0.00 38.84 2.43
240 241 9.078753 CCGTGTTTTTAGACAATTACTGTTTTT 57.921 29.630 0.00 0.00 38.84 1.94
305 306 7.736447 AGTAGATAATCTTGCAAATACCTGC 57.264 36.000 0.00 0.00 42.95 4.85
330 331 8.635328 GCATATGATATGCATATTTGATTCCCA 58.365 33.333 27.48 11.05 45.67 4.37
333 334 7.692460 TGATATGCATATTTGATTCCCAGAC 57.308 36.000 20.00 3.82 0.00 3.51
334 335 7.464273 TGATATGCATATTTGATTCCCAGACT 58.536 34.615 20.00 0.00 0.00 3.24
335 336 7.946219 TGATATGCATATTTGATTCCCAGACTT 59.054 33.333 20.00 0.00 0.00 3.01
336 337 5.840243 TGCATATTTGATTCCCAGACTTG 57.160 39.130 0.00 0.00 0.00 3.16
337 338 5.263599 TGCATATTTGATTCCCAGACTTGT 58.736 37.500 0.00 0.00 0.00 3.16
338 339 6.422333 TGCATATTTGATTCCCAGACTTGTA 58.578 36.000 0.00 0.00 0.00 2.41
339 340 6.889177 TGCATATTTGATTCCCAGACTTGTAA 59.111 34.615 0.00 0.00 0.00 2.41
340 341 7.395772 TGCATATTTGATTCCCAGACTTGTAAA 59.604 33.333 0.00 0.00 0.00 2.01
341 342 8.250332 GCATATTTGATTCCCAGACTTGTAAAA 58.750 33.333 0.00 0.00 0.00 1.52
347 348 8.934023 TGATTCCCAGACTTGTAAAATAAAGT 57.066 30.769 0.00 0.00 39.31 2.66
393 394 6.730960 TTTACAATTACACTCCGTTCATCC 57.269 37.500 0.00 0.00 0.00 3.51
394 395 4.280436 ACAATTACACTCCGTTCATCCA 57.720 40.909 0.00 0.00 0.00 3.41
395 396 4.647611 ACAATTACACTCCGTTCATCCAA 58.352 39.130 0.00 0.00 0.00 3.53
396 397 5.067273 ACAATTACACTCCGTTCATCCAAA 58.933 37.500 0.00 0.00 0.00 3.28
397 398 5.048991 ACAATTACACTCCGTTCATCCAAAC 60.049 40.000 0.00 0.00 0.00 2.93
398 399 2.930826 ACACTCCGTTCATCCAAACT 57.069 45.000 0.00 0.00 0.00 2.66
399 400 2.767505 ACACTCCGTTCATCCAAACTC 58.232 47.619 0.00 0.00 0.00 3.01
400 401 1.726791 CACTCCGTTCATCCAAACTCG 59.273 52.381 0.00 0.00 0.00 4.18
401 402 1.616865 ACTCCGTTCATCCAAACTCGA 59.383 47.619 0.00 0.00 0.00 4.04
402 403 2.036733 ACTCCGTTCATCCAAACTCGAA 59.963 45.455 0.00 0.00 0.00 3.71
403 404 3.262420 CTCCGTTCATCCAAACTCGAAT 58.738 45.455 0.00 0.00 0.00 3.34
404 405 3.259064 TCCGTTCATCCAAACTCGAATC 58.741 45.455 0.00 0.00 0.00 2.52
405 406 2.029244 CCGTTCATCCAAACTCGAATCG 59.971 50.000 0.00 0.00 0.00 3.34
406 407 2.029244 CGTTCATCCAAACTCGAATCGG 59.971 50.000 1.76 0.00 0.00 4.18
407 408 3.259064 GTTCATCCAAACTCGAATCGGA 58.741 45.455 1.76 0.00 0.00 4.55
408 409 3.603158 TCATCCAAACTCGAATCGGAA 57.397 42.857 1.76 0.00 0.00 4.30
409 410 3.932822 TCATCCAAACTCGAATCGGAAA 58.067 40.909 1.76 0.00 0.00 3.13
410 411 4.513442 TCATCCAAACTCGAATCGGAAAT 58.487 39.130 1.76 0.00 0.00 2.17
411 412 4.941263 TCATCCAAACTCGAATCGGAAATT 59.059 37.500 1.76 0.00 0.00 1.82
412 413 5.414454 TCATCCAAACTCGAATCGGAAATTT 59.586 36.000 1.76 0.00 0.00 1.82
413 414 5.699097 TCCAAACTCGAATCGGAAATTTT 57.301 34.783 1.76 0.00 0.00 1.82
414 415 5.457140 TCCAAACTCGAATCGGAAATTTTG 58.543 37.500 1.76 5.75 0.00 2.44
415 416 4.089923 CCAAACTCGAATCGGAAATTTTGC 59.910 41.667 1.76 0.00 0.00 3.68
416 417 4.766404 AACTCGAATCGGAAATTTTGCT 57.234 36.364 1.76 0.00 0.00 3.91
417 418 4.342352 ACTCGAATCGGAAATTTTGCTC 57.658 40.909 1.76 0.00 0.00 4.26
418 419 3.127030 ACTCGAATCGGAAATTTTGCTCC 59.873 43.478 1.76 0.00 0.00 4.70
419 420 2.422127 TCGAATCGGAAATTTTGCTCCC 59.578 45.455 1.76 0.00 0.00 4.30
420 421 2.479560 CGAATCGGAAATTTTGCTCCCC 60.480 50.000 0.00 0.00 0.00 4.81
421 422 2.532250 ATCGGAAATTTTGCTCCCCT 57.468 45.000 0.00 0.00 0.00 4.79
422 423 2.302587 TCGGAAATTTTGCTCCCCTT 57.697 45.000 0.00 0.00 0.00 3.95
423 424 1.892474 TCGGAAATTTTGCTCCCCTTG 59.108 47.619 0.00 0.00 0.00 3.61
424 425 1.892474 CGGAAATTTTGCTCCCCTTGA 59.108 47.619 0.00 0.00 0.00 3.02
425 426 2.298729 CGGAAATTTTGCTCCCCTTGAA 59.701 45.455 0.00 0.00 0.00 2.69
426 427 3.055891 CGGAAATTTTGCTCCCCTTGAAT 60.056 43.478 0.00 0.00 0.00 2.57
427 428 4.563374 CGGAAATTTTGCTCCCCTTGAATT 60.563 41.667 0.00 0.00 0.00 2.17
428 429 4.696877 GGAAATTTTGCTCCCCTTGAATTG 59.303 41.667 0.00 0.00 0.00 2.32
429 430 2.837532 TTTTGCTCCCCTTGAATTGC 57.162 45.000 0.00 0.00 0.00 3.56
430 431 1.714541 TTTGCTCCCCTTGAATTGCA 58.285 45.000 0.00 0.00 0.00 4.08
431 432 1.714541 TTGCTCCCCTTGAATTGCAA 58.285 45.000 0.00 0.00 37.96 4.08
444 445 5.402997 TGAATTGCAAGTGCCAAATATGA 57.597 34.783 3.09 0.00 41.18 2.15
445 446 5.791666 TGAATTGCAAGTGCCAAATATGAA 58.208 33.333 3.09 0.00 41.18 2.57
446 447 5.638657 TGAATTGCAAGTGCCAAATATGAAC 59.361 36.000 3.09 0.00 41.18 3.18
447 448 4.597404 TTGCAAGTGCCAAATATGAACA 57.403 36.364 0.00 0.00 41.18 3.18
448 449 4.177165 TGCAAGTGCCAAATATGAACAG 57.823 40.909 0.00 0.00 41.18 3.16
449 450 3.825585 TGCAAGTGCCAAATATGAACAGA 59.174 39.130 0.00 0.00 41.18 3.41
450 451 4.280425 TGCAAGTGCCAAATATGAACAGAA 59.720 37.500 0.00 0.00 41.18 3.02
451 452 5.221402 TGCAAGTGCCAAATATGAACAGAAA 60.221 36.000 0.00 0.00 41.18 2.52
452 453 5.695816 GCAAGTGCCAAATATGAACAGAAAA 59.304 36.000 0.00 0.00 34.31 2.29
453 454 6.369615 GCAAGTGCCAAATATGAACAGAAAAT 59.630 34.615 0.00 0.00 34.31 1.82
454 455 7.412237 GCAAGTGCCAAATATGAACAGAAAATC 60.412 37.037 0.00 0.00 34.31 2.17
455 456 7.472334 AGTGCCAAATATGAACAGAAAATCT 57.528 32.000 0.00 0.00 0.00 2.40
456 457 7.899973 AGTGCCAAATATGAACAGAAAATCTT 58.100 30.769 0.00 0.00 0.00 2.40
457 458 8.370182 AGTGCCAAATATGAACAGAAAATCTTT 58.630 29.630 0.00 0.00 0.00 2.52
458 459 8.992073 GTGCCAAATATGAACAGAAAATCTTTT 58.008 29.630 0.00 0.00 0.00 2.27
459 460 9.206870 TGCCAAATATGAACAGAAAATCTTTTC 57.793 29.630 7.21 7.21 45.22 2.29
460 461 9.206870 GCCAAATATGAACAGAAAATCTTTTCA 57.793 29.630 15.63 10.38 44.31 2.69
489 490 8.404107 ACAAATTAAAACTACACCTATGTGCT 57.596 30.769 0.00 0.00 46.86 4.40
490 491 9.509956 ACAAATTAAAACTACACCTATGTGCTA 57.490 29.630 0.00 0.00 46.86 3.49
493 494 7.997107 TTAAAACTACACCTATGTGCTATCG 57.003 36.000 0.00 0.00 46.86 2.92
494 495 3.644884 ACTACACCTATGTGCTATCGC 57.355 47.619 0.00 0.00 46.86 4.58
495 496 3.223435 ACTACACCTATGTGCTATCGCT 58.777 45.455 0.00 0.00 46.86 4.93
496 497 3.637229 ACTACACCTATGTGCTATCGCTT 59.363 43.478 0.00 0.00 46.86 4.68
497 498 4.825634 ACTACACCTATGTGCTATCGCTTA 59.174 41.667 0.00 0.00 46.86 3.09
498 499 4.665833 ACACCTATGTGCTATCGCTTAA 57.334 40.909 0.00 0.00 46.86 1.85
499 500 5.018539 ACACCTATGTGCTATCGCTTAAA 57.981 39.130 0.00 0.00 46.86 1.52
500 501 5.424757 ACACCTATGTGCTATCGCTTAAAA 58.575 37.500 0.00 0.00 46.86 1.52
501 502 5.878116 ACACCTATGTGCTATCGCTTAAAAA 59.122 36.000 0.00 0.00 46.86 1.94
502 503 6.183360 ACACCTATGTGCTATCGCTTAAAAAC 60.183 38.462 0.00 0.00 46.86 2.43
503 504 5.006358 ACCTATGTGCTATCGCTTAAAAACG 59.994 40.000 0.00 0.00 36.97 3.60
504 505 3.733024 TGTGCTATCGCTTAAAAACGG 57.267 42.857 0.00 0.00 36.97 4.44
505 506 3.327626 TGTGCTATCGCTTAAAAACGGA 58.672 40.909 0.00 0.00 36.97 4.69
506 507 3.747010 TGTGCTATCGCTTAAAAACGGAA 59.253 39.130 0.00 0.00 36.97 4.30
507 508 4.086574 GTGCTATCGCTTAAAAACGGAAC 58.913 43.478 0.00 0.00 36.97 3.62
508 509 3.747010 TGCTATCGCTTAAAAACGGAACA 59.253 39.130 0.00 0.00 36.97 3.18
509 510 4.142988 TGCTATCGCTTAAAAACGGAACAG 60.143 41.667 0.00 0.00 36.97 3.16
510 511 4.142966 GCTATCGCTTAAAAACGGAACAGT 60.143 41.667 0.00 0.00 0.00 3.55
511 512 3.865224 TCGCTTAAAAACGGAACAGTC 57.135 42.857 0.00 0.00 0.00 3.51
512 513 2.219216 TCGCTTAAAAACGGAACAGTCG 59.781 45.455 0.00 0.00 0.00 4.18
513 514 2.660900 CGCTTAAAAACGGAACAGTCGG 60.661 50.000 0.00 0.00 0.00 4.79
514 515 2.545106 GCTTAAAAACGGAACAGTCGGA 59.455 45.455 0.00 0.00 0.00 4.55
515 516 3.002553 GCTTAAAAACGGAACAGTCGGAA 59.997 43.478 0.00 0.00 0.00 4.30
516 517 4.769215 CTTAAAAACGGAACAGTCGGAAG 58.231 43.478 0.00 0.00 0.00 3.46
517 518 2.320745 AAAACGGAACAGTCGGAAGT 57.679 45.000 0.00 0.00 0.00 3.01
518 519 2.320745 AAACGGAACAGTCGGAAGTT 57.679 45.000 0.00 0.00 0.00 2.66
519 520 3.457610 AAACGGAACAGTCGGAAGTTA 57.542 42.857 0.00 0.00 0.00 2.24
520 521 2.719426 ACGGAACAGTCGGAAGTTAG 57.281 50.000 0.00 0.00 0.00 2.34
521 522 1.959282 ACGGAACAGTCGGAAGTTAGT 59.041 47.619 0.00 0.24 0.00 2.24
522 523 2.030451 ACGGAACAGTCGGAAGTTAGTC 60.030 50.000 0.00 0.00 0.00 2.59
523 524 2.670509 CGGAACAGTCGGAAGTTAGTCC 60.671 54.545 0.00 0.00 0.00 3.85
524 525 2.298163 GGAACAGTCGGAAGTTAGTCCA 59.702 50.000 0.00 0.00 37.56 4.02
525 526 3.056035 GGAACAGTCGGAAGTTAGTCCAT 60.056 47.826 0.00 0.00 37.56 3.41
526 527 3.870633 ACAGTCGGAAGTTAGTCCATC 57.129 47.619 0.00 0.00 37.56 3.51
527 528 2.496470 ACAGTCGGAAGTTAGTCCATCC 59.504 50.000 0.00 0.00 37.56 3.51
528 529 2.108970 AGTCGGAAGTTAGTCCATCCC 58.891 52.381 0.00 0.00 37.56 3.85
529 530 1.829222 GTCGGAAGTTAGTCCATCCCA 59.171 52.381 0.00 0.00 37.56 4.37
530 531 2.434702 GTCGGAAGTTAGTCCATCCCAT 59.565 50.000 0.00 0.00 37.56 4.00
531 532 3.640029 GTCGGAAGTTAGTCCATCCCATA 59.360 47.826 0.00 0.00 37.56 2.74
532 533 4.283722 GTCGGAAGTTAGTCCATCCCATAT 59.716 45.833 0.00 0.00 37.56 1.78
533 534 5.479375 GTCGGAAGTTAGTCCATCCCATATA 59.521 44.000 0.00 0.00 37.56 0.86
534 535 5.479375 TCGGAAGTTAGTCCATCCCATATAC 59.521 44.000 0.00 0.00 37.56 1.47
535 536 5.245301 CGGAAGTTAGTCCATCCCATATACA 59.755 44.000 0.00 0.00 37.56 2.29
536 537 6.070767 CGGAAGTTAGTCCATCCCATATACAT 60.071 42.308 0.00 0.00 37.56 2.29
537 538 7.123697 CGGAAGTTAGTCCATCCCATATACATA 59.876 40.741 0.00 0.00 37.56 2.29
538 539 8.993424 GGAAGTTAGTCCATCCCATATACATAT 58.007 37.037 0.00 0.00 37.65 1.78
715 716 1.076332 CTTTTGACTCGGCCCTTACG 58.924 55.000 0.00 0.00 0.00 3.18
737 738 2.044946 GGACCAGGCGGCAGAAAT 60.045 61.111 13.08 0.00 34.57 2.17
755 756 6.257193 GCAGAAATGGCCAATTTTATTCAGAG 59.743 38.462 10.96 4.07 38.64 3.35
756 757 7.549839 CAGAAATGGCCAATTTTATTCAGAGA 58.450 34.615 10.96 0.00 38.64 3.10
757 758 7.705325 CAGAAATGGCCAATTTTATTCAGAGAG 59.295 37.037 10.96 0.00 38.64 3.20
758 759 4.989279 TGGCCAATTTTATTCAGAGAGC 57.011 40.909 0.61 0.00 0.00 4.09
759 760 3.701040 TGGCCAATTTTATTCAGAGAGCC 59.299 43.478 0.61 0.00 37.19 4.70
760 761 3.243201 GGCCAATTTTATTCAGAGAGCCG 60.243 47.826 0.00 0.00 0.00 5.52
761 762 3.378427 GCCAATTTTATTCAGAGAGCCGT 59.622 43.478 0.00 0.00 0.00 5.68
762 763 4.142381 GCCAATTTTATTCAGAGAGCCGTT 60.142 41.667 0.00 0.00 0.00 4.44
763 764 5.335127 CCAATTTTATTCAGAGAGCCGTTG 58.665 41.667 0.00 0.00 0.00 4.10
764 765 5.123820 CCAATTTTATTCAGAGAGCCGTTGA 59.876 40.000 0.00 0.00 0.00 3.18
765 766 6.253746 CAATTTTATTCAGAGAGCCGTTGAG 58.746 40.000 0.00 0.00 0.00 3.02
990 998 0.727398 CGTTGAGATTCCTTTCGGCC 59.273 55.000 0.00 0.00 0.00 6.13
1321 1329 4.914983 AGAAGAGCATGAAGAATGGTTGA 58.085 39.130 0.00 0.00 46.95 3.18
1381 1389 1.139654 CGGAAGAAGAGATGGATGGCA 59.860 52.381 0.00 0.00 0.00 4.92
1426 1437 4.480386 GCTATTGAGCTTAGGATGTTGC 57.520 45.455 0.00 0.00 45.98 4.17
1858 1871 4.684242 CAGGGGTTTTCTTGCGTATTTTTC 59.316 41.667 0.00 0.00 0.00 2.29
2265 2284 2.197465 GACATGGGTAGGGAAGGAAGT 58.803 52.381 0.00 0.00 0.00 3.01
2537 2564 2.610859 GGCTTCTCACCCCCTCCA 60.611 66.667 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.159285 ACATGATCAGGTGCAACACG 58.841 50.000 13.05 0.00 39.98 4.49
4 5 3.940852 TCATACATGATCAGGTGCAACAC 59.059 43.478 22.63 0.00 39.98 3.32
8 9 4.492494 AACTCATACATGATCAGGTGCA 57.508 40.909 22.63 4.25 36.02 4.57
9 10 4.637534 ACAAACTCATACATGATCAGGTGC 59.362 41.667 22.63 0.00 36.02 5.01
10 11 5.876460 TCACAAACTCATACATGATCAGGTG 59.124 40.000 22.63 9.01 36.02 4.00
11 12 6.053632 TCACAAACTCATACATGATCAGGT 57.946 37.500 18.14 18.14 36.02 4.00
12 13 5.526479 CCTCACAAACTCATACATGATCAGG 59.474 44.000 5.68 5.68 36.02 3.86
13 14 6.036844 CACCTCACAAACTCATACATGATCAG 59.963 42.308 0.00 0.00 36.02 2.90
14 15 5.876460 CACCTCACAAACTCATACATGATCA 59.124 40.000 0.00 0.00 36.02 2.92
17 18 5.227569 ACACCTCACAAACTCATACATGA 57.772 39.130 0.00 0.00 35.16 3.07
18 19 7.763985 TGTATACACCTCACAAACTCATACATG 59.236 37.037 0.08 0.00 0.00 3.21
19 20 7.847096 TGTATACACCTCACAAACTCATACAT 58.153 34.615 0.08 0.00 0.00 2.29
20 21 7.234661 TGTATACACCTCACAAACTCATACA 57.765 36.000 0.08 0.00 0.00 2.29
21 22 7.817962 AGTTGTATACACCTCACAAACTCATAC 59.182 37.037 4.68 0.00 34.20 2.39
22 23 7.903145 AGTTGTATACACCTCACAAACTCATA 58.097 34.615 4.68 0.00 34.20 2.15
24 25 6.169557 AGTTGTATACACCTCACAAACTCA 57.830 37.500 4.68 0.00 34.20 3.41
25 26 7.201530 GCATAGTTGTATACACCTCACAAACTC 60.202 40.741 6.16 0.00 34.20 3.01
26 27 6.594159 GCATAGTTGTATACACCTCACAAACT 59.406 38.462 6.16 6.97 34.20 2.66
27 28 6.370442 TGCATAGTTGTATACACCTCACAAAC 59.630 38.462 6.16 0.00 34.20 2.93
28 29 6.468543 TGCATAGTTGTATACACCTCACAAA 58.531 36.000 6.16 0.00 34.20 2.83
29 30 6.043854 TGCATAGTTGTATACACCTCACAA 57.956 37.500 6.16 0.00 0.00 3.33
30 31 5.669164 TGCATAGTTGTATACACCTCACA 57.331 39.130 6.16 1.53 0.00 3.58
31 32 7.553881 AAATGCATAGTTGTATACACCTCAC 57.446 36.000 6.16 1.77 0.00 3.51
32 33 8.574251 AAAAATGCATAGTTGTATACACCTCA 57.426 30.769 6.16 0.00 0.00 3.86
56 57 6.928492 GTCATACTTCTGCCAAAATGGAAAAA 59.072 34.615 0.00 0.00 40.96 1.94
57 58 6.454795 GTCATACTTCTGCCAAAATGGAAAA 58.545 36.000 0.00 0.00 40.96 2.29
58 59 5.335583 CGTCATACTTCTGCCAAAATGGAAA 60.336 40.000 0.00 0.00 40.96 3.13
59 60 4.155826 CGTCATACTTCTGCCAAAATGGAA 59.844 41.667 0.00 0.00 40.96 3.53
60 61 3.689161 CGTCATACTTCTGCCAAAATGGA 59.311 43.478 0.00 0.00 40.96 3.41
61 62 3.731867 GCGTCATACTTCTGCCAAAATGG 60.732 47.826 0.00 0.00 41.55 3.16
62 63 3.429085 GCGTCATACTTCTGCCAAAATG 58.571 45.455 0.00 0.00 0.00 2.32
63 64 2.095853 CGCGTCATACTTCTGCCAAAAT 59.904 45.455 0.00 0.00 0.00 1.82
64 65 1.463056 CGCGTCATACTTCTGCCAAAA 59.537 47.619 0.00 0.00 0.00 2.44
65 66 1.075542 CGCGTCATACTTCTGCCAAA 58.924 50.000 0.00 0.00 0.00 3.28
66 67 0.037697 ACGCGTCATACTTCTGCCAA 60.038 50.000 5.58 0.00 0.00 4.52
67 68 0.735978 CACGCGTCATACTTCTGCCA 60.736 55.000 9.86 0.00 0.00 4.92
68 69 1.999051 CACGCGTCATACTTCTGCC 59.001 57.895 9.86 0.00 0.00 4.85
69 70 1.345176 GCACGCGTCATACTTCTGC 59.655 57.895 9.86 2.00 0.00 4.26
70 71 1.625870 CGCACGCGTCATACTTCTG 59.374 57.895 9.86 0.00 34.35 3.02
71 72 4.072913 CGCACGCGTCATACTTCT 57.927 55.556 9.86 0.00 34.35 2.85
81 82 1.955529 AAAGCAGATGTACGCACGCG 61.956 55.000 10.36 10.36 46.03 6.01
82 83 0.247301 GAAAGCAGATGTACGCACGC 60.247 55.000 0.00 0.00 0.00 5.34
83 84 0.370273 GGAAAGCAGATGTACGCACG 59.630 55.000 0.00 0.00 0.00 5.34
84 85 1.438651 TGGAAAGCAGATGTACGCAC 58.561 50.000 0.00 0.00 0.00 5.34
85 86 2.177394 TTGGAAAGCAGATGTACGCA 57.823 45.000 0.00 0.00 0.00 5.24
86 87 3.764885 ATTTGGAAAGCAGATGTACGC 57.235 42.857 0.00 0.00 0.00 4.42
87 88 8.773645 TCATATAATTTGGAAAGCAGATGTACG 58.226 33.333 0.00 0.00 0.00 3.67
93 94 9.208022 CGAGTATCATATAATTTGGAAAGCAGA 57.792 33.333 0.00 0.00 33.17 4.26
94 95 8.993121 ACGAGTATCATATAATTTGGAAAGCAG 58.007 33.333 0.00 0.00 33.17 4.24
95 96 8.902540 ACGAGTATCATATAATTTGGAAAGCA 57.097 30.769 0.00 0.00 33.17 3.91
104 105 9.503399 GGGGAAAGAAACGAGTATCATATAATT 57.497 33.333 0.00 0.00 33.17 1.40
105 106 7.817962 CGGGGAAAGAAACGAGTATCATATAAT 59.182 37.037 0.00 0.00 33.17 1.28
106 107 7.014518 TCGGGGAAAGAAACGAGTATCATATAA 59.985 37.037 0.00 0.00 33.17 0.98
107 108 6.491062 TCGGGGAAAGAAACGAGTATCATATA 59.509 38.462 0.00 0.00 33.17 0.86
108 109 5.303589 TCGGGGAAAGAAACGAGTATCATAT 59.696 40.000 0.00 0.00 33.17 1.78
109 110 4.646040 TCGGGGAAAGAAACGAGTATCATA 59.354 41.667 0.00 0.00 33.17 2.15
110 111 3.449737 TCGGGGAAAGAAACGAGTATCAT 59.550 43.478 0.00 0.00 33.17 2.45
111 112 2.827322 TCGGGGAAAGAAACGAGTATCA 59.173 45.455 0.00 0.00 33.17 2.15
112 113 3.515330 TCGGGGAAAGAAACGAGTATC 57.485 47.619 0.00 0.00 0.00 2.24
113 114 3.967332 TTCGGGGAAAGAAACGAGTAT 57.033 42.857 0.00 0.00 36.65 2.12
114 115 3.967332 ATTCGGGGAAAGAAACGAGTA 57.033 42.857 0.00 0.00 36.65 2.59
115 116 2.853235 ATTCGGGGAAAGAAACGAGT 57.147 45.000 0.00 0.00 36.65 4.18
116 117 3.858247 ACTATTCGGGGAAAGAAACGAG 58.142 45.455 0.00 0.00 36.65 4.18
117 118 3.674138 CGACTATTCGGGGAAAGAAACGA 60.674 47.826 0.00 0.00 41.89 3.85
118 119 2.601763 CGACTATTCGGGGAAAGAAACG 59.398 50.000 0.00 0.00 41.89 3.60
130 131 7.361127 ACATACTACAGATTTCCGACTATTCG 58.639 38.462 0.00 0.00 45.44 3.34
135 136 9.352191 ACTATAACATACTACAGATTTCCGACT 57.648 33.333 0.00 0.00 0.00 4.18
136 137 9.962783 AACTATAACATACTACAGATTTCCGAC 57.037 33.333 0.00 0.00 0.00 4.79
149 150 8.429641 CCACTCCCATACAAACTATAACATACT 58.570 37.037 0.00 0.00 0.00 2.12
150 151 8.208903 ACCACTCCCATACAAACTATAACATAC 58.791 37.037 0.00 0.00 0.00 2.39
151 152 8.326765 ACCACTCCCATACAAACTATAACATA 57.673 34.615 0.00 0.00 0.00 2.29
152 153 7.208064 ACCACTCCCATACAAACTATAACAT 57.792 36.000 0.00 0.00 0.00 2.71
153 154 6.630203 ACCACTCCCATACAAACTATAACA 57.370 37.500 0.00 0.00 0.00 2.41
154 155 8.886719 GTTTACCACTCCCATACAAACTATAAC 58.113 37.037 0.00 0.00 0.00 1.89
155 156 8.828751 AGTTTACCACTCCCATACAAACTATAA 58.171 33.333 0.00 0.00 34.07 0.98
156 157 8.383374 AGTTTACCACTCCCATACAAACTATA 57.617 34.615 0.00 0.00 34.07 1.31
157 158 7.266905 AGTTTACCACTCCCATACAAACTAT 57.733 36.000 0.00 0.00 34.07 2.12
158 159 6.691255 AGTTTACCACTCCCATACAAACTA 57.309 37.500 0.00 0.00 34.07 2.24
159 160 5.578157 AGTTTACCACTCCCATACAAACT 57.422 39.130 0.00 0.00 31.70 2.66
160 161 5.533528 ACAAGTTTACCACTCCCATACAAAC 59.466 40.000 0.00 0.00 32.94 2.93
161 162 5.697067 ACAAGTTTACCACTCCCATACAAA 58.303 37.500 0.00 0.00 32.94 2.83
162 163 5.313280 ACAAGTTTACCACTCCCATACAA 57.687 39.130 0.00 0.00 32.94 2.41
163 164 4.986054 ACAAGTTTACCACTCCCATACA 57.014 40.909 0.00 0.00 32.94 2.29
164 165 5.067954 ACAACAAGTTTACCACTCCCATAC 58.932 41.667 0.00 0.00 32.94 2.39
165 166 5.313280 ACAACAAGTTTACCACTCCCATA 57.687 39.130 0.00 0.00 32.94 2.74
166 167 4.178956 ACAACAAGTTTACCACTCCCAT 57.821 40.909 0.00 0.00 32.94 4.00
167 168 3.655615 ACAACAAGTTTACCACTCCCA 57.344 42.857 0.00 0.00 32.94 4.37
168 169 5.008316 CAGTTACAACAAGTTTACCACTCCC 59.992 44.000 0.00 0.00 32.94 4.30
169 170 5.505159 GCAGTTACAACAAGTTTACCACTCC 60.505 44.000 0.00 0.00 32.94 3.85
170 171 5.296035 AGCAGTTACAACAAGTTTACCACTC 59.704 40.000 0.00 0.00 32.94 3.51
171 172 5.190677 AGCAGTTACAACAAGTTTACCACT 58.809 37.500 0.00 0.00 37.30 4.00
172 173 5.494632 AGCAGTTACAACAAGTTTACCAC 57.505 39.130 0.00 0.00 0.00 4.16
173 174 7.118680 GCTATAGCAGTTACAACAAGTTTACCA 59.881 37.037 20.01 0.00 41.59 3.25
174 175 7.413767 GGCTATAGCAGTTACAACAAGTTTACC 60.414 40.741 25.53 0.00 44.36 2.85
175 176 7.333672 AGGCTATAGCAGTTACAACAAGTTTAC 59.666 37.037 25.53 2.28 44.36 2.01
176 177 7.333423 CAGGCTATAGCAGTTACAACAAGTTTA 59.667 37.037 25.53 0.00 44.36 2.01
177 178 6.149474 CAGGCTATAGCAGTTACAACAAGTTT 59.851 38.462 25.53 0.00 44.36 2.66
178 179 5.643777 CAGGCTATAGCAGTTACAACAAGTT 59.356 40.000 25.53 0.00 44.36 2.66
179 180 5.178797 CAGGCTATAGCAGTTACAACAAGT 58.821 41.667 25.53 0.00 44.36 3.16
180 181 5.178797 ACAGGCTATAGCAGTTACAACAAG 58.821 41.667 25.53 5.85 44.36 3.16
181 182 5.160607 ACAGGCTATAGCAGTTACAACAA 57.839 39.130 25.53 0.00 44.36 2.83
182 183 4.819105 ACAGGCTATAGCAGTTACAACA 57.181 40.909 25.53 0.00 44.36 3.33
183 184 7.169982 CAGATTACAGGCTATAGCAGTTACAAC 59.830 40.741 25.53 10.40 44.36 3.32
184 185 7.147724 ACAGATTACAGGCTATAGCAGTTACAA 60.148 37.037 25.53 14.21 44.36 2.41
185 186 6.323996 ACAGATTACAGGCTATAGCAGTTACA 59.676 38.462 25.53 11.24 44.36 2.41
186 187 6.750148 ACAGATTACAGGCTATAGCAGTTAC 58.250 40.000 25.53 15.68 44.36 2.50
187 188 6.978674 ACAGATTACAGGCTATAGCAGTTA 57.021 37.500 25.53 16.69 44.36 2.24
188 189 5.878406 ACAGATTACAGGCTATAGCAGTT 57.122 39.130 25.53 11.15 44.36 3.16
189 190 5.878406 AACAGATTACAGGCTATAGCAGT 57.122 39.130 25.53 23.00 44.36 4.40
190 191 5.698545 GGAAACAGATTACAGGCTATAGCAG 59.301 44.000 25.53 18.84 44.36 4.24
191 192 5.454755 GGGAAACAGATTACAGGCTATAGCA 60.455 44.000 25.53 5.60 44.36 3.49
192 193 4.998033 GGGAAACAGATTACAGGCTATAGC 59.002 45.833 16.78 16.78 41.14 2.97
193 194 5.221461 ACGGGAAACAGATTACAGGCTATAG 60.221 44.000 0.00 0.00 0.00 1.31
194 195 4.652421 ACGGGAAACAGATTACAGGCTATA 59.348 41.667 0.00 0.00 0.00 1.31
195 196 3.454812 ACGGGAAACAGATTACAGGCTAT 59.545 43.478 0.00 0.00 0.00 2.97
196 197 2.835764 ACGGGAAACAGATTACAGGCTA 59.164 45.455 0.00 0.00 0.00 3.93
197 198 1.628846 ACGGGAAACAGATTACAGGCT 59.371 47.619 0.00 0.00 0.00 4.58
198 199 1.737793 CACGGGAAACAGATTACAGGC 59.262 52.381 0.00 0.00 0.00 4.85
199 200 3.053831 ACACGGGAAACAGATTACAGG 57.946 47.619 0.00 0.00 0.00 4.00
200 201 5.432885 AAAACACGGGAAACAGATTACAG 57.567 39.130 0.00 0.00 0.00 2.74
201 202 5.838531 AAAAACACGGGAAACAGATTACA 57.161 34.783 0.00 0.00 0.00 2.41
202 203 7.073883 GTCTAAAAACACGGGAAACAGATTAC 58.926 38.462 0.00 0.00 0.00 1.89
203 204 6.766944 TGTCTAAAAACACGGGAAACAGATTA 59.233 34.615 0.00 0.00 0.00 1.75
204 205 5.591067 TGTCTAAAAACACGGGAAACAGATT 59.409 36.000 0.00 0.00 0.00 2.40
205 206 5.127491 TGTCTAAAAACACGGGAAACAGAT 58.873 37.500 0.00 0.00 0.00 2.90
206 207 4.515361 TGTCTAAAAACACGGGAAACAGA 58.485 39.130 0.00 0.00 0.00 3.41
207 208 4.886247 TGTCTAAAAACACGGGAAACAG 57.114 40.909 0.00 0.00 0.00 3.16
208 209 5.838531 ATTGTCTAAAAACACGGGAAACA 57.161 34.783 0.00 0.00 0.00 2.83
209 210 7.377662 CAGTAATTGTCTAAAAACACGGGAAAC 59.622 37.037 0.00 0.00 0.00 2.78
210 211 7.067251 ACAGTAATTGTCTAAAAACACGGGAAA 59.933 33.333 0.00 0.00 33.87 3.13
211 212 6.543100 ACAGTAATTGTCTAAAAACACGGGAA 59.457 34.615 0.00 0.00 33.87 3.97
212 213 6.056884 ACAGTAATTGTCTAAAAACACGGGA 58.943 36.000 0.00 0.00 33.87 5.14
213 214 6.308371 ACAGTAATTGTCTAAAAACACGGG 57.692 37.500 0.00 0.00 33.87 5.28
214 215 8.623310 AAAACAGTAATTGTCTAAAAACACGG 57.377 30.769 0.00 0.00 39.73 4.94
279 280 9.442047 GCAGGTATTTGCAAGATTATCTACTAT 57.558 33.333 0.00 0.00 43.53 2.12
280 281 8.833231 GCAGGTATTTGCAAGATTATCTACTA 57.167 34.615 0.00 0.00 43.53 1.82
281 282 7.736447 GCAGGTATTTGCAAGATTATCTACT 57.264 36.000 0.00 0.00 43.53 2.57
304 305 8.635328 TGGGAATCAAATATGCATATCATATGC 58.365 33.333 21.07 21.07 45.20 3.14
307 308 9.399797 GTCTGGGAATCAAATATGCATATCATA 57.600 33.333 19.35 8.24 41.52 2.15
308 309 8.114102 AGTCTGGGAATCAAATATGCATATCAT 58.886 33.333 19.35 9.13 39.17 2.45
309 310 7.464273 AGTCTGGGAATCAAATATGCATATCA 58.536 34.615 19.35 9.47 0.00 2.15
310 311 7.934855 AGTCTGGGAATCAAATATGCATATC 57.065 36.000 19.35 6.91 0.00 1.63
311 312 7.727186 ACAAGTCTGGGAATCAAATATGCATAT 59.273 33.333 13.63 13.63 0.00 1.78
312 313 7.062322 ACAAGTCTGGGAATCAAATATGCATA 58.938 34.615 9.27 9.27 0.00 3.14
313 314 5.895534 ACAAGTCTGGGAATCAAATATGCAT 59.104 36.000 3.79 3.79 0.00 3.96
314 315 5.263599 ACAAGTCTGGGAATCAAATATGCA 58.736 37.500 0.00 0.00 0.00 3.96
315 316 5.841957 ACAAGTCTGGGAATCAAATATGC 57.158 39.130 0.00 0.00 0.00 3.14
321 322 9.362151 ACTTTATTTTACAAGTCTGGGAATCAA 57.638 29.630 0.00 0.00 0.00 2.57
322 323 8.934023 ACTTTATTTTACAAGTCTGGGAATCA 57.066 30.769 0.00 0.00 0.00 2.57
367 368 8.241367 GGATGAACGGAGTGTAATTGTAAATTT 58.759 33.333 0.00 0.00 45.00 1.82
368 369 7.392113 TGGATGAACGGAGTGTAATTGTAAATT 59.608 33.333 0.00 0.00 45.00 1.82
369 370 6.882140 TGGATGAACGGAGTGTAATTGTAAAT 59.118 34.615 0.00 0.00 45.00 1.40
370 371 6.231951 TGGATGAACGGAGTGTAATTGTAAA 58.768 36.000 0.00 0.00 45.00 2.01
371 372 5.795972 TGGATGAACGGAGTGTAATTGTAA 58.204 37.500 0.00 0.00 45.00 2.41
372 373 5.408880 TGGATGAACGGAGTGTAATTGTA 57.591 39.130 0.00 0.00 45.00 2.41
373 374 4.280436 TGGATGAACGGAGTGTAATTGT 57.720 40.909 0.00 0.00 45.00 2.71
374 375 5.181245 AGTTTGGATGAACGGAGTGTAATTG 59.819 40.000 0.00 0.00 45.00 2.32
375 376 5.313712 AGTTTGGATGAACGGAGTGTAATT 58.686 37.500 0.00 0.00 45.00 1.40
376 377 4.906618 AGTTTGGATGAACGGAGTGTAAT 58.093 39.130 0.00 0.00 45.00 1.89
377 378 4.312443 GAGTTTGGATGAACGGAGTGTAA 58.688 43.478 0.00 0.00 45.00 2.41
378 379 3.613193 CGAGTTTGGATGAACGGAGTGTA 60.613 47.826 0.00 0.00 45.00 2.90
379 380 2.767505 GAGTTTGGATGAACGGAGTGT 58.232 47.619 0.00 0.00 45.00 3.55
380 381 1.726791 CGAGTTTGGATGAACGGAGTG 59.273 52.381 0.00 0.00 45.00 3.51
382 383 2.363788 TCGAGTTTGGATGAACGGAG 57.636 50.000 0.00 0.00 34.74 4.63
383 384 2.823924 TTCGAGTTTGGATGAACGGA 57.176 45.000 0.00 0.00 34.74 4.69
384 385 2.029244 CGATTCGAGTTTGGATGAACGG 59.971 50.000 0.00 0.00 34.74 4.44
385 386 2.029244 CCGATTCGAGTTTGGATGAACG 59.971 50.000 7.83 0.00 34.74 3.95
386 387 3.259064 TCCGATTCGAGTTTGGATGAAC 58.741 45.455 7.83 0.00 0.00 3.18
387 388 3.603158 TCCGATTCGAGTTTGGATGAA 57.397 42.857 7.83 0.00 0.00 2.57
388 389 3.603158 TTCCGATTCGAGTTTGGATGA 57.397 42.857 7.83 0.00 0.00 2.92
389 390 4.882671 ATTTCCGATTCGAGTTTGGATG 57.117 40.909 7.83 0.00 0.00 3.51
390 391 5.897377 AAATTTCCGATTCGAGTTTGGAT 57.103 34.783 7.83 0.00 0.00 3.41
391 392 5.457140 CAAAATTTCCGATTCGAGTTTGGA 58.543 37.500 7.83 2.97 0.00 3.53
392 393 4.089923 GCAAAATTTCCGATTCGAGTTTGG 59.910 41.667 15.92 7.75 0.00 3.28
393 394 4.917415 AGCAAAATTTCCGATTCGAGTTTG 59.083 37.500 7.83 10.58 0.00 2.93
394 395 5.121221 AGCAAAATTTCCGATTCGAGTTT 57.879 34.783 7.83 0.00 0.00 2.66
395 396 4.379499 GGAGCAAAATTTCCGATTCGAGTT 60.379 41.667 7.83 0.00 0.00 3.01
396 397 3.127030 GGAGCAAAATTTCCGATTCGAGT 59.873 43.478 7.83 0.00 0.00 4.18
397 398 3.487544 GGGAGCAAAATTTCCGATTCGAG 60.488 47.826 7.83 0.00 34.17 4.04
398 399 2.422127 GGGAGCAAAATTTCCGATTCGA 59.578 45.455 7.83 0.00 34.17 3.71
399 400 2.479560 GGGGAGCAAAATTTCCGATTCG 60.480 50.000 0.00 0.00 34.17 3.34
400 401 2.760650 AGGGGAGCAAAATTTCCGATTC 59.239 45.455 0.00 0.00 34.17 2.52
401 402 2.820178 AGGGGAGCAAAATTTCCGATT 58.180 42.857 0.00 0.00 34.17 3.34
402 403 2.497273 CAAGGGGAGCAAAATTTCCGAT 59.503 45.455 0.00 0.00 34.17 4.18
403 404 1.892474 CAAGGGGAGCAAAATTTCCGA 59.108 47.619 0.00 0.00 34.17 4.55
404 405 1.892474 TCAAGGGGAGCAAAATTTCCG 59.108 47.619 0.00 0.00 34.17 4.30
405 406 4.558226 ATTCAAGGGGAGCAAAATTTCC 57.442 40.909 0.00 0.00 0.00 3.13
406 407 4.154737 GCAATTCAAGGGGAGCAAAATTTC 59.845 41.667 0.00 0.00 0.00 2.17
407 408 4.074259 GCAATTCAAGGGGAGCAAAATTT 58.926 39.130 0.00 0.00 0.00 1.82
408 409 3.072768 TGCAATTCAAGGGGAGCAAAATT 59.927 39.130 0.00 0.00 0.00 1.82
409 410 2.638855 TGCAATTCAAGGGGAGCAAAAT 59.361 40.909 0.00 0.00 0.00 1.82
410 411 2.045524 TGCAATTCAAGGGGAGCAAAA 58.954 42.857 0.00 0.00 0.00 2.44
411 412 1.714541 TGCAATTCAAGGGGAGCAAA 58.285 45.000 0.00 0.00 0.00 3.68
412 413 1.619827 CTTGCAATTCAAGGGGAGCAA 59.380 47.619 0.00 0.00 46.50 3.91
413 414 1.259609 CTTGCAATTCAAGGGGAGCA 58.740 50.000 0.00 0.00 46.50 4.26
421 422 5.791666 TCATATTTGGCACTTGCAATTCAA 58.208 33.333 0.00 0.00 44.36 2.69
422 423 5.402997 TCATATTTGGCACTTGCAATTCA 57.597 34.783 0.00 0.00 44.36 2.57
423 424 5.638657 TGTTCATATTTGGCACTTGCAATTC 59.361 36.000 0.00 0.00 44.36 2.17
424 425 5.549347 TGTTCATATTTGGCACTTGCAATT 58.451 33.333 0.00 0.00 44.36 2.32
425 426 5.047164 TCTGTTCATATTTGGCACTTGCAAT 60.047 36.000 0.00 0.00 44.36 3.56
426 427 4.280425 TCTGTTCATATTTGGCACTTGCAA 59.720 37.500 0.00 0.00 44.36 4.08
427 428 3.825585 TCTGTTCATATTTGGCACTTGCA 59.174 39.130 3.15 0.00 44.36 4.08
428 429 4.439305 TCTGTTCATATTTGGCACTTGC 57.561 40.909 0.00 0.00 41.14 4.01
429 430 7.816031 AGATTTTCTGTTCATATTTGGCACTTG 59.184 33.333 0.00 0.00 0.00 3.16
430 431 7.899973 AGATTTTCTGTTCATATTTGGCACTT 58.100 30.769 0.00 0.00 0.00 3.16
431 432 7.472334 AGATTTTCTGTTCATATTTGGCACT 57.528 32.000 0.00 0.00 0.00 4.40
432 433 8.538409 AAAGATTTTCTGTTCATATTTGGCAC 57.462 30.769 0.00 0.00 0.00 5.01
433 434 9.206870 GAAAAGATTTTCTGTTCATATTTGGCA 57.793 29.630 10.15 0.00 39.85 4.92
434 435 9.206870 TGAAAAGATTTTCTGTTCATATTTGGC 57.793 29.630 16.62 0.00 43.70 4.52
463 464 9.509956 AGCACATAGGTGTAGTTTTAATTTGTA 57.490 29.630 9.57 0.00 46.95 2.41
464 465 8.404107 AGCACATAGGTGTAGTTTTAATTTGT 57.596 30.769 9.57 0.00 46.95 2.83
467 468 9.042008 CGATAGCACATAGGTGTAGTTTTAATT 57.958 33.333 9.57 0.00 46.95 1.40
468 469 8.589335 CGATAGCACATAGGTGTAGTTTTAAT 57.411 34.615 9.57 0.00 46.95 1.40
469 470 7.997107 CGATAGCACATAGGTGTAGTTTTAA 57.003 36.000 9.57 0.00 46.95 1.52
488 489 5.526010 ACTGTTCCGTTTTTAAGCGATAG 57.474 39.130 0.14 0.00 34.38 2.08
489 490 4.090354 CGACTGTTCCGTTTTTAAGCGATA 59.910 41.667 0.14 0.00 34.38 2.92
490 491 3.120786 CGACTGTTCCGTTTTTAAGCGAT 60.121 43.478 0.14 0.00 34.38 4.58
491 492 2.219216 CGACTGTTCCGTTTTTAAGCGA 59.781 45.455 0.14 0.00 34.38 4.93
492 493 2.556806 CGACTGTTCCGTTTTTAAGCG 58.443 47.619 0.00 0.00 0.00 4.68
493 494 2.545106 TCCGACTGTTCCGTTTTTAAGC 59.455 45.455 0.00 0.00 0.00 3.09
494 495 4.271776 ACTTCCGACTGTTCCGTTTTTAAG 59.728 41.667 0.00 0.00 0.00 1.85
495 496 4.190772 ACTTCCGACTGTTCCGTTTTTAA 58.809 39.130 0.00 0.00 0.00 1.52
496 497 3.795877 ACTTCCGACTGTTCCGTTTTTA 58.204 40.909 0.00 0.00 0.00 1.52
497 498 2.635714 ACTTCCGACTGTTCCGTTTTT 58.364 42.857 0.00 0.00 0.00 1.94
498 499 2.320745 ACTTCCGACTGTTCCGTTTT 57.679 45.000 0.00 0.00 0.00 2.43
499 500 2.320745 AACTTCCGACTGTTCCGTTT 57.679 45.000 0.00 0.00 0.00 3.60
500 501 2.363359 ACTAACTTCCGACTGTTCCGTT 59.637 45.455 0.00 0.00 0.00 4.44
501 502 1.959282 ACTAACTTCCGACTGTTCCGT 59.041 47.619 0.00 0.00 0.00 4.69
502 503 2.593257 GACTAACTTCCGACTGTTCCG 58.407 52.381 0.00 0.00 0.00 4.30
503 504 2.298163 TGGACTAACTTCCGACTGTTCC 59.702 50.000 0.00 0.00 38.69 3.62
504 505 3.655276 TGGACTAACTTCCGACTGTTC 57.345 47.619 0.00 0.00 38.69 3.18
505 506 3.056035 GGATGGACTAACTTCCGACTGTT 60.056 47.826 0.00 0.00 38.69 3.16
506 507 2.496470 GGATGGACTAACTTCCGACTGT 59.504 50.000 0.00 0.00 38.69 3.55
507 508 2.159085 GGGATGGACTAACTTCCGACTG 60.159 54.545 0.00 0.00 38.69 3.51
508 509 2.108970 GGGATGGACTAACTTCCGACT 58.891 52.381 0.00 0.00 38.69 4.18
509 510 1.829222 TGGGATGGACTAACTTCCGAC 59.171 52.381 0.00 0.00 38.69 4.79
510 511 2.241281 TGGGATGGACTAACTTCCGA 57.759 50.000 0.00 0.00 38.69 4.55
511 512 4.891992 ATATGGGATGGACTAACTTCCG 57.108 45.455 0.00 0.00 38.69 4.30
512 513 6.681729 TGTATATGGGATGGACTAACTTCC 57.318 41.667 0.00 0.00 36.03 3.46
553 554 9.394767 GCAAAAGGATAATTAACCCATCAATTT 57.605 29.630 8.09 0.00 0.00 1.82
554 555 7.992608 GGCAAAAGGATAATTAACCCATCAATT 59.007 33.333 8.09 0.00 0.00 2.32
555 556 7.420097 GGGCAAAAGGATAATTAACCCATCAAT 60.420 37.037 8.09 0.00 34.82 2.57
558 559 5.602561 AGGGCAAAAGGATAATTAACCCATC 59.397 40.000 8.09 0.00 37.28 3.51
737 738 3.701040 GGCTCTCTGAATAAAATTGGCCA 59.299 43.478 0.00 0.00 36.31 5.36
755 756 4.090057 GCAACGGCTCAACGGCTC 62.090 66.667 0.00 0.00 38.39 4.70
756 757 4.927782 TGCAACGGCTCAACGGCT 62.928 61.111 0.00 0.00 41.91 5.52
757 758 4.683334 GTGCAACGGCTCAACGGC 62.683 66.667 0.00 0.00 41.91 5.68
843 844 4.664677 GTCACCACCGCTGTCGCT 62.665 66.667 0.00 0.00 0.00 4.93
942 950 1.142748 CTCCACTGCTAGCTTCCCG 59.857 63.158 17.23 1.90 0.00 5.14
990 998 1.144936 GGAAGACATGGAGCTCGGG 59.855 63.158 7.83 1.83 0.00 5.14
1381 1389 0.104855 TCTCTGTCAGTGCGTGCTTT 59.895 50.000 0.00 0.00 0.00 3.51
1426 1437 4.899502 TCAAGCTTCCTAACCTTCTTCTG 58.100 43.478 0.00 0.00 0.00 3.02
2306 2333 0.865111 TGCAAACATTCACGGTCTCG 59.135 50.000 0.00 0.00 43.02 4.04



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.