Multiple sequence alignment - TraesCS2B01G566000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G566000 chr2B 100.000 2243 0 0 1 2243 757242617 757240375 0.000000e+00 4143.0
1 TraesCS2B01G566000 chr2B 91.135 643 45 4 35 672 200862099 200861464 0.000000e+00 861.0
2 TraesCS2B01G566000 chr2B 82.403 591 68 24 970 1553 757433652 757433091 1.200000e-132 483.0
3 TraesCS2B01G566000 chr2B 78.235 850 115 46 746 1554 757394800 757393980 4.330000e-132 481.0
4 TraesCS2B01G566000 chr2B 80.121 659 88 27 919 1554 757453219 757452581 3.400000e-123 451.0
5 TraesCS2B01G566000 chr2B 81.071 280 30 13 919 1188 757561840 757561574 3.780000e-48 202.0
6 TraesCS2B01G566000 chr2B 84.804 204 26 4 1556 1755 756640585 756640383 1.360000e-47 200.0
7 TraesCS2B01G566000 chr2B 84.615 117 11 5 804 913 757433879 757433763 2.360000e-20 110.0
8 TraesCS2B01G566000 chr2B 100.000 38 0 0 1 38 757242560 757242523 1.110000e-08 71.3
9 TraesCS2B01G566000 chr7B 92.105 646 42 3 32 671 604110111 604110753 0.000000e+00 902.0
10 TraesCS2B01G566000 chr5B 91.331 646 44 4 35 675 140116499 140115861 0.000000e+00 872.0
11 TraesCS2B01G566000 chr5B 91.318 645 44 5 32 671 669509563 669508926 0.000000e+00 870.0
12 TraesCS2B01G566000 chr5B 89.767 645 58 4 32 671 106788008 106787367 0.000000e+00 819.0
13 TraesCS2B01G566000 chr4B 90.726 647 50 6 32 671 671059792 671059149 0.000000e+00 854.0
14 TraesCS2B01G566000 chr3B 90.640 641 51 4 34 669 632916951 632917587 0.000000e+00 843.0
15 TraesCS2B01G566000 chr6B 90.047 643 55 4 34 671 460202570 460203208 0.000000e+00 824.0
16 TraesCS2B01G566000 chr6B 89.580 643 51 7 32 669 645517967 645517336 0.000000e+00 802.0
17 TraesCS2B01G566000 chr4A 89.684 475 37 4 1779 2243 706584429 706583957 1.480000e-166 595.0
18 TraesCS2B01G566000 chr4A 91.705 217 18 0 2027 2243 706578607 706578391 3.620000e-78 302.0
19 TraesCS2B01G566000 chr2D 77.825 938 106 61 680 1554 619312949 619312051 9.310000e-134 486.0
20 TraesCS2B01G566000 chr2D 80.962 478 51 28 804 1244 610757611 610757137 2.130000e-90 342.0
21 TraesCS2B01G566000 chr2D 80.925 173 17 6 772 928 619252151 619251979 3.030000e-24 122.0
22 TraesCS2B01G566000 chr2A 77.234 940 125 51 674 1554 750425487 750424578 3.370000e-128 468.0
23 TraesCS2B01G566000 chr2A 89.706 272 22 1 984 1249 750365427 750365156 2.130000e-90 342.0
24 TraesCS2B01G566000 chr2A 79.518 166 21 12 746 907 750334779 750334623 3.050000e-19 106.0
25 TraesCS2B01G566000 chr7D 90.800 250 23 0 1000 1249 498285209 498284960 3.570000e-88 335.0
26 TraesCS2B01G566000 chr7D 84.337 83 10 2 1162 1243 215155676 215155756 6.640000e-11 78.7
27 TraesCS2B01G566000 chrUn 97.368 38 1 0 1 38 98220651 98220614 5.170000e-07 65.8
28 TraesCS2B01G566000 chr6D 97.368 38 1 0 1 38 427268958 427268921 5.170000e-07 65.8
29 TraesCS2B01G566000 chr6D 97.368 38 1 0 1 38 441785316 441785353 5.170000e-07 65.8
30 TraesCS2B01G566000 chr5D 97.368 38 1 0 1 38 157690117 157690154 5.170000e-07 65.8
31 TraesCS2B01G566000 chr5D 97.368 38 1 0 1 38 512221232 512221195 5.170000e-07 65.8
32 TraesCS2B01G566000 chr4D 97.368 38 1 0 1 38 25384415 25384452 5.170000e-07 65.8
33 TraesCS2B01G566000 chr3D 97.368 38 1 0 1 38 147837946 147837909 5.170000e-07 65.8
34 TraesCS2B01G566000 chr1D 97.368 38 1 0 1 38 372469699 372469662 5.170000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G566000 chr2B 757240375 757242617 2242 True 2107.15 4143 100.000 1 2243 2 chr2B.!!$R6 2242
1 TraesCS2B01G566000 chr2B 200861464 200862099 635 True 861.00 861 91.135 35 672 1 chr2B.!!$R1 637
2 TraesCS2B01G566000 chr2B 757393980 757394800 820 True 481.00 481 78.235 746 1554 1 chr2B.!!$R3 808
3 TraesCS2B01G566000 chr2B 757452581 757453219 638 True 451.00 451 80.121 919 1554 1 chr2B.!!$R4 635
4 TraesCS2B01G566000 chr2B 757433091 757433879 788 True 296.50 483 83.509 804 1553 2 chr2B.!!$R7 749
5 TraesCS2B01G566000 chr7B 604110111 604110753 642 False 902.00 902 92.105 32 671 1 chr7B.!!$F1 639
6 TraesCS2B01G566000 chr5B 140115861 140116499 638 True 872.00 872 91.331 35 675 1 chr5B.!!$R2 640
7 TraesCS2B01G566000 chr5B 669508926 669509563 637 True 870.00 870 91.318 32 671 1 chr5B.!!$R3 639
8 TraesCS2B01G566000 chr5B 106787367 106788008 641 True 819.00 819 89.767 32 671 1 chr5B.!!$R1 639
9 TraesCS2B01G566000 chr4B 671059149 671059792 643 True 854.00 854 90.726 32 671 1 chr4B.!!$R1 639
10 TraesCS2B01G566000 chr3B 632916951 632917587 636 False 843.00 843 90.640 34 669 1 chr3B.!!$F1 635
11 TraesCS2B01G566000 chr6B 460202570 460203208 638 False 824.00 824 90.047 34 671 1 chr6B.!!$F1 637
12 TraesCS2B01G566000 chr6B 645517336 645517967 631 True 802.00 802 89.580 32 669 1 chr6B.!!$R1 637
13 TraesCS2B01G566000 chr2D 619312051 619312949 898 True 486.00 486 77.825 680 1554 1 chr2D.!!$R3 874
14 TraesCS2B01G566000 chr2A 750424578 750425487 909 True 468.00 468 77.234 674 1554 1 chr2A.!!$R3 880

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.467384 AGATGGACGAGGAAGCCATG 59.533 55.0 0.0 0.0 42.22 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1637 1795 0.107066 ATTCATGCGTGCATCTCCCA 60.107 50.0 3.96 0.0 33.9 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.833582 GGCCGAGATGGACGAGGA 60.834 66.667 0.00 0.00 42.00 3.71
18 19 2.423898 GGCCGAGATGGACGAGGAA 61.424 63.158 0.00 0.00 42.00 3.36
19 20 1.066587 GCCGAGATGGACGAGGAAG 59.933 63.158 0.00 0.00 42.00 3.46
20 21 1.066587 CCGAGATGGACGAGGAAGC 59.933 63.158 0.00 0.00 42.00 3.86
21 22 1.066587 CGAGATGGACGAGGAAGCC 59.933 63.158 0.00 0.00 0.00 4.35
22 23 1.667154 CGAGATGGACGAGGAAGCCA 61.667 60.000 0.00 0.00 35.91 4.75
23 24 0.755686 GAGATGGACGAGGAAGCCAT 59.244 55.000 0.00 0.00 44.70 4.40
24 25 0.467384 AGATGGACGAGGAAGCCATG 59.533 55.000 0.00 0.00 42.22 3.66
25 26 0.533755 GATGGACGAGGAAGCCATGG 60.534 60.000 7.63 7.63 42.22 3.66
26 27 2.514824 GGACGAGGAAGCCATGGC 60.515 66.667 30.12 30.12 42.33 4.40
144 145 0.959553 AACAGTTCTTCGCGGAGAGA 59.040 50.000 18.18 10.27 0.00 3.10
328 329 2.060980 ATCACCGAGGCAGAGTCCC 61.061 63.158 0.00 0.00 0.00 4.46
336 337 0.832135 AGGCAGAGTCCCAGTCGAAA 60.832 55.000 0.00 0.00 0.00 3.46
338 339 1.542547 GGCAGAGTCCCAGTCGAAAAA 60.543 52.381 0.00 0.00 0.00 1.94
339 340 2.427506 GCAGAGTCCCAGTCGAAAAAT 58.572 47.619 0.00 0.00 0.00 1.82
340 341 2.160417 GCAGAGTCCCAGTCGAAAAATG 59.840 50.000 0.00 0.00 0.00 2.32
443 452 5.637006 AAAGCCTTACGCATTTTGTATCA 57.363 34.783 0.00 0.00 41.38 2.15
600 617 4.698651 CACCGCCGCGTGCAAAAT 62.699 61.111 12.58 0.00 41.33 1.82
608 625 1.334960 CCGCGTGCAAAATTTGACTCT 60.335 47.619 10.26 0.00 0.00 3.24
612 629 3.795150 GCGTGCAAAATTTGACTCTTCCA 60.795 43.478 10.26 0.00 0.00 3.53
615 632 3.384146 TGCAAAATTTGACTCTTCCAGCA 59.616 39.130 10.26 0.00 0.00 4.41
688 705 4.338012 TCTAACCAATAGACCGACTGTGA 58.662 43.478 0.00 0.00 35.68 3.58
711 730 0.958822 AACCATCTTTCCACGTTGGC 59.041 50.000 0.09 0.00 37.47 4.52
741 760 1.264749 ATGAACGCAGCCCCTGACTA 61.265 55.000 0.00 0.00 32.44 2.59
742 761 1.153549 GAACGCAGCCCCTGACTAG 60.154 63.158 0.00 0.00 32.44 2.57
743 762 1.605058 GAACGCAGCCCCTGACTAGA 61.605 60.000 0.00 0.00 32.44 2.43
744 763 1.608717 AACGCAGCCCCTGACTAGAG 61.609 60.000 0.00 0.00 32.44 2.43
782 802 5.656480 GAGTCATCCTCTGTTCTTCTAACC 58.344 45.833 0.00 0.00 37.22 2.85
793 813 5.492895 TGTTCTTCTAACCAGTCAACACAA 58.507 37.500 0.00 0.00 0.00 3.33
796 816 7.040340 TGTTCTTCTAACCAGTCAACACAAAAA 60.040 33.333 0.00 0.00 0.00 1.94
838 873 2.581354 CTTCCACCTCAGCCTCCG 59.419 66.667 0.00 0.00 0.00 4.63
876 917 2.158755 CCCAACACTCACCTCAAACTCT 60.159 50.000 0.00 0.00 0.00 3.24
883 924 3.643320 ACTCACCTCAAACTCTCATCACA 59.357 43.478 0.00 0.00 0.00 3.58
890 931 9.987272 CACCTCAAACTCTCATCACAATATATA 57.013 33.333 0.00 0.00 0.00 0.86
907 950 2.910688 ATATAGCTCCACACCCAACG 57.089 50.000 0.00 0.00 0.00 4.10
912 962 1.669115 CTCCACACCCAACGCAGAG 60.669 63.158 0.00 0.00 0.00 3.35
926 1006 4.016113 ACGCAGAGAAACACAAAAAGAC 57.984 40.909 0.00 0.00 0.00 3.01
953 1041 2.952293 GCTCAGGCCTCAGCTCACA 61.952 63.158 23.17 0.00 39.73 3.58
954 1042 1.079266 CTCAGGCCTCAGCTCACAC 60.079 63.158 0.00 0.00 39.73 3.82
958 1046 2.046507 GCCTCAGCTCACACCCAG 60.047 66.667 0.00 0.00 35.50 4.45
959 1047 2.046507 CCTCAGCTCACACCCAGC 60.047 66.667 0.00 0.00 37.12 4.85
960 1048 2.433838 CTCAGCTCACACCCAGCG 60.434 66.667 0.00 0.00 42.14 5.18
961 1049 4.687215 TCAGCTCACACCCAGCGC 62.687 66.667 0.00 0.00 42.14 5.92
967 1055 4.954970 CACACCCAGCGCCAGGTT 62.955 66.667 15.89 0.00 32.72 3.50
968 1056 4.643387 ACACCCAGCGCCAGGTTC 62.643 66.667 15.89 0.00 32.72 3.62
975 1072 3.394836 GCGCCAGGTTCCCTCTCT 61.395 66.667 0.00 0.00 0.00 3.10
976 1073 2.960688 GCGCCAGGTTCCCTCTCTT 61.961 63.158 0.00 0.00 0.00 2.85
1003 1100 2.413796 TCGCTCGCGAAACAATTAATGT 59.586 40.909 11.33 0.00 46.01 2.71
1128 1231 2.741092 GGTGACCTGTCCAGCGAA 59.259 61.111 0.00 0.00 0.00 4.70
1245 1354 2.514824 GAGGCCGGGAACTGATGC 60.515 66.667 2.18 0.00 36.31 3.91
1249 1358 3.197790 CCGGGAACTGATGCAGCG 61.198 66.667 0.00 0.00 36.31 5.18
1250 1359 2.434884 CGGGAACTGATGCAGCGT 60.435 61.111 0.00 0.00 36.31 5.07
1252 1361 1.577328 CGGGAACTGATGCAGCGTTT 61.577 55.000 12.12 0.98 36.31 3.60
1253 1362 0.598065 GGGAACTGATGCAGCGTTTT 59.402 50.000 12.12 0.00 34.37 2.43
1255 1364 1.537202 GGAACTGATGCAGCGTTTTCT 59.463 47.619 12.12 0.00 34.37 2.52
1256 1365 2.030805 GGAACTGATGCAGCGTTTTCTT 60.031 45.455 12.12 0.00 34.37 2.52
1259 1368 3.664107 ACTGATGCAGCGTTTTCTTAGA 58.336 40.909 0.00 0.00 34.37 2.10
1260 1369 4.065088 ACTGATGCAGCGTTTTCTTAGAA 58.935 39.130 0.00 0.00 34.37 2.10
1263 1372 3.722555 TGCAGCGTTTTCTTAGAATCG 57.277 42.857 12.86 12.86 0.00 3.34
1264 1373 2.415168 TGCAGCGTTTTCTTAGAATCGG 59.585 45.455 16.67 6.92 0.00 4.18
1266 1375 3.124636 GCAGCGTTTTCTTAGAATCGGAA 59.875 43.478 16.67 0.00 0.00 4.30
1268 1377 5.673818 GCAGCGTTTTCTTAGAATCGGAATT 60.674 40.000 16.67 0.00 0.00 2.17
1272 1381 6.608610 CGTTTTCTTAGAATCGGAATTGGTT 58.391 36.000 0.00 0.00 0.00 3.67
1273 1382 6.523201 CGTTTTCTTAGAATCGGAATTGGTTG 59.477 38.462 0.00 0.00 0.00 3.77
1274 1383 7.572353 CGTTTTCTTAGAATCGGAATTGGTTGA 60.572 37.037 0.00 0.00 0.00 3.18
1276 1385 7.753309 TTCTTAGAATCGGAATTGGTTGAAA 57.247 32.000 0.00 0.00 0.00 2.69
1279 1388 9.456147 TCTTAGAATCGGAATTGGTTGAAAATA 57.544 29.630 0.00 0.00 0.00 1.40
1281 1390 7.703058 AGAATCGGAATTGGTTGAAAATAGT 57.297 32.000 0.00 0.00 0.00 2.12
1282 1391 7.538575 AGAATCGGAATTGGTTGAAAATAGTG 58.461 34.615 0.00 0.00 0.00 2.74
1284 1393 7.645058 ATCGGAATTGGTTGAAAATAGTGAT 57.355 32.000 0.00 0.00 0.00 3.06
1285 1394 6.851609 TCGGAATTGGTTGAAAATAGTGATG 58.148 36.000 0.00 0.00 0.00 3.07
1286 1395 6.035843 CGGAATTGGTTGAAAATAGTGATGG 58.964 40.000 0.00 0.00 0.00 3.51
1287 1396 6.340522 GGAATTGGTTGAAAATAGTGATGGG 58.659 40.000 0.00 0.00 0.00 4.00
1288 1397 6.154363 GGAATTGGTTGAAAATAGTGATGGGA 59.846 38.462 0.00 0.00 0.00 4.37
1289 1398 7.147672 GGAATTGGTTGAAAATAGTGATGGGAT 60.148 37.037 0.00 0.00 0.00 3.85
1291 1400 5.200483 TGGTTGAAAATAGTGATGGGATCC 58.800 41.667 1.92 1.92 0.00 3.36
1292 1401 5.200483 GGTTGAAAATAGTGATGGGATCCA 58.800 41.667 15.23 0.00 38.19 3.41
1295 1404 7.505585 GGTTGAAAATAGTGATGGGATCCATAA 59.494 37.037 15.23 0.00 45.26 1.90
1296 1405 9.082313 GTTGAAAATAGTGATGGGATCCATAAT 57.918 33.333 15.23 3.63 45.26 1.28
1298 1407 9.739276 TGAAAATAGTGATGGGATCCATAATAC 57.261 33.333 15.23 5.73 45.26 1.89
1299 1408 9.965902 GAAAATAGTGATGGGATCCATAATACT 57.034 33.333 15.23 12.67 45.26 2.12
1301 1410 9.745018 AAATAGTGATGGGATCCATAATACTTG 57.255 33.333 15.23 0.00 45.26 3.16
1302 1411 6.770286 AGTGATGGGATCCATAATACTTGT 57.230 37.500 15.23 0.00 45.26 3.16
1303 1412 7.872061 AGTGATGGGATCCATAATACTTGTA 57.128 36.000 15.23 0.00 45.26 2.41
1304 1413 7.911651 AGTGATGGGATCCATAATACTTGTAG 58.088 38.462 15.23 0.00 45.26 2.74
1305 1414 7.038017 AGTGATGGGATCCATAATACTTGTAGG 60.038 40.741 15.23 0.00 45.26 3.18
1306 1415 7.022496 TGATGGGATCCATAATACTTGTAGGA 58.978 38.462 15.23 0.00 45.26 2.94
1307 1416 7.684186 TGATGGGATCCATAATACTTGTAGGAT 59.316 37.037 15.23 0.00 45.26 3.24
1308 1417 9.213777 GATGGGATCCATAATACTTGTAGGATA 57.786 37.037 15.23 0.00 45.26 2.59
1329 1464 4.650754 ATACGTTCAGTGGTAGATGGTC 57.349 45.455 0.00 0.00 0.00 4.02
1331 1466 2.492484 ACGTTCAGTGGTAGATGGTCTC 59.508 50.000 0.00 0.00 0.00 3.36
1333 1468 3.428180 CGTTCAGTGGTAGATGGTCTCTG 60.428 52.174 0.00 0.00 35.28 3.35
1334 1470 2.739943 TCAGTGGTAGATGGTCTCTGG 58.260 52.381 0.00 0.00 35.28 3.86
1336 1472 2.428890 CAGTGGTAGATGGTCTCTGGTC 59.571 54.545 0.00 0.00 35.28 4.02
1338 1474 1.033574 GGTAGATGGTCTCTGGTCCG 58.966 60.000 0.00 0.00 35.28 4.79
1341 1477 1.645710 AGATGGTCTCTGGTCCGTTT 58.354 50.000 0.00 0.00 31.12 3.60
1343 1479 2.076863 GATGGTCTCTGGTCCGTTTTG 58.923 52.381 0.00 0.00 0.00 2.44
1344 1480 0.534203 TGGTCTCTGGTCCGTTTTGC 60.534 55.000 0.00 0.00 0.00 3.68
1399 1551 7.159372 GGAAACGGACATATTGTGTAGGATAT 58.841 38.462 0.00 0.00 42.36 1.63
1400 1552 8.308931 GGAAACGGACATATTGTGTAGGATATA 58.691 37.037 0.00 0.00 42.36 0.86
1401 1553 9.136952 GAAACGGACATATTGTGTAGGATATAC 57.863 37.037 0.00 0.00 42.36 1.47
1402 1554 8.418597 AACGGACATATTGTGTAGGATATACT 57.581 34.615 0.00 0.00 42.36 2.12
1403 1555 8.053026 ACGGACATATTGTGTAGGATATACTC 57.947 38.462 0.00 0.00 42.36 2.59
1404 1556 7.122353 ACGGACATATTGTGTAGGATATACTCC 59.878 40.741 0.00 0.00 42.36 3.85
1405 1557 7.416438 CGGACATATTGTGTAGGATATACTCCC 60.416 44.444 0.00 0.00 42.74 4.30
1407 1559 8.736097 ACATATTGTGTAGGATATACTCCCAA 57.264 34.615 0.00 0.00 39.91 4.12
1458 1616 4.381932 GCCCCTGAAGTATTTGTTGATTGG 60.382 45.833 0.00 0.00 0.00 3.16
1461 1619 6.389906 CCCTGAAGTATTTGTTGATTGGAAC 58.610 40.000 0.00 0.00 0.00 3.62
1526 1684 4.371786 TCATAGTCACCGATTCAAGATGC 58.628 43.478 0.00 0.00 0.00 3.91
1554 1712 3.862642 GCACTAAGAATATCCCAGCTCCG 60.863 52.174 0.00 0.00 0.00 4.63
1555 1713 2.300437 ACTAAGAATATCCCAGCTCCGC 59.700 50.000 0.00 0.00 0.00 5.54
1556 1714 1.131638 AAGAATATCCCAGCTCCGCA 58.868 50.000 0.00 0.00 0.00 5.69
1557 1715 0.394565 AGAATATCCCAGCTCCGCAC 59.605 55.000 0.00 0.00 0.00 5.34
1558 1716 0.106708 GAATATCCCAGCTCCGCACA 59.893 55.000 0.00 0.00 0.00 4.57
1559 1717 0.546122 AATATCCCAGCTCCGCACAA 59.454 50.000 0.00 0.00 0.00 3.33
1560 1718 0.546122 ATATCCCAGCTCCGCACAAA 59.454 50.000 0.00 0.00 0.00 2.83
1561 1719 0.546122 TATCCCAGCTCCGCACAAAT 59.454 50.000 0.00 0.00 0.00 2.32
1562 1720 0.323725 ATCCCAGCTCCGCACAAATT 60.324 50.000 0.00 0.00 0.00 1.82
1563 1721 0.960364 TCCCAGCTCCGCACAAATTC 60.960 55.000 0.00 0.00 0.00 2.17
1564 1722 1.135315 CCAGCTCCGCACAAATTCG 59.865 57.895 0.00 0.00 0.00 3.34
1565 1723 1.135315 CAGCTCCGCACAAATTCGG 59.865 57.895 0.00 0.00 46.52 4.30
1566 1724 2.040544 AGCTCCGCACAAATTCGGG 61.041 57.895 3.73 0.00 45.31 5.14
1567 1725 2.332654 GCTCCGCACAAATTCGGGT 61.333 57.895 3.73 0.00 45.31 5.28
1568 1726 1.794222 CTCCGCACAAATTCGGGTC 59.206 57.895 3.73 0.00 45.31 4.46
1569 1727 1.644786 CTCCGCACAAATTCGGGTCC 61.645 60.000 3.73 0.00 45.31 4.46
1570 1728 2.478746 CGCACAAATTCGGGTCCG 59.521 61.111 2.52 2.52 41.35 4.79
1571 1729 2.874751 GCACAAATTCGGGTCCGG 59.125 61.111 9.68 0.00 40.25 5.14
1572 1730 1.969589 GCACAAATTCGGGTCCGGT 60.970 57.895 9.68 0.00 40.25 5.28
1573 1731 1.918868 GCACAAATTCGGGTCCGGTC 61.919 60.000 9.68 0.00 40.25 4.79
1574 1732 0.604243 CACAAATTCGGGTCCGGTCA 60.604 55.000 9.68 0.00 40.25 4.02
1575 1733 0.326927 ACAAATTCGGGTCCGGTCAT 59.673 50.000 9.68 0.00 40.25 3.06
1576 1734 0.732571 CAAATTCGGGTCCGGTCATG 59.267 55.000 9.68 1.38 40.25 3.07
1577 1735 0.393808 AAATTCGGGTCCGGTCATGG 60.394 55.000 9.68 0.00 40.25 3.66
1578 1736 1.559065 AATTCGGGTCCGGTCATGGT 61.559 55.000 9.68 0.00 40.25 3.55
1579 1737 0.688418 ATTCGGGTCCGGTCATGGTA 60.688 55.000 9.68 0.00 40.25 3.25
1580 1738 0.903924 TTCGGGTCCGGTCATGGTAA 60.904 55.000 9.68 0.00 40.25 2.85
1581 1739 1.143183 CGGGTCCGGTCATGGTAAG 59.857 63.158 0.00 0.00 35.56 2.34
1582 1740 1.153229 GGGTCCGGTCATGGTAAGC 60.153 63.158 0.00 0.00 0.00 3.09
1583 1741 1.623542 GGGTCCGGTCATGGTAAGCT 61.624 60.000 0.00 0.00 0.00 3.74
1584 1742 0.179081 GGTCCGGTCATGGTAAGCTC 60.179 60.000 0.00 0.00 0.00 4.09
1585 1743 0.824759 GTCCGGTCATGGTAAGCTCT 59.175 55.000 0.00 0.00 0.00 4.09
1586 1744 0.824109 TCCGGTCATGGTAAGCTCTG 59.176 55.000 0.00 0.00 0.00 3.35
1587 1745 0.537188 CCGGTCATGGTAAGCTCTGT 59.463 55.000 0.00 0.00 0.00 3.41
1588 1746 1.066143 CCGGTCATGGTAAGCTCTGTT 60.066 52.381 0.00 0.00 0.00 3.16
1589 1747 2.167693 CCGGTCATGGTAAGCTCTGTTA 59.832 50.000 0.00 0.00 0.00 2.41
1590 1748 3.187700 CGGTCATGGTAAGCTCTGTTAC 58.812 50.000 0.00 0.00 32.90 2.50
1591 1749 3.119101 CGGTCATGGTAAGCTCTGTTACT 60.119 47.826 0.00 0.00 33.98 2.24
1592 1750 4.434520 GGTCATGGTAAGCTCTGTTACTC 58.565 47.826 0.00 0.00 33.98 2.59
1593 1751 4.434520 GTCATGGTAAGCTCTGTTACTCC 58.565 47.826 0.00 0.00 33.98 3.85
1594 1752 3.130516 TCATGGTAAGCTCTGTTACTCCG 59.869 47.826 0.00 0.00 33.98 4.63
1595 1753 2.522185 TGGTAAGCTCTGTTACTCCGT 58.478 47.619 0.00 0.00 33.98 4.69
1596 1754 2.230508 TGGTAAGCTCTGTTACTCCGTG 59.769 50.000 0.00 0.00 33.98 4.94
1597 1755 2.490903 GGTAAGCTCTGTTACTCCGTGA 59.509 50.000 0.00 0.00 33.98 4.35
1598 1756 3.057033 GGTAAGCTCTGTTACTCCGTGAA 60.057 47.826 0.00 0.00 33.98 3.18
1599 1757 3.963428 AAGCTCTGTTACTCCGTGAAT 57.037 42.857 0.00 0.00 0.00 2.57
1600 1758 3.963428 AGCTCTGTTACTCCGTGAATT 57.037 42.857 0.00 0.00 0.00 2.17
1601 1759 4.273148 AGCTCTGTTACTCCGTGAATTT 57.727 40.909 0.00 0.00 0.00 1.82
1602 1760 4.246458 AGCTCTGTTACTCCGTGAATTTC 58.754 43.478 0.00 0.00 0.00 2.17
1603 1761 3.371285 GCTCTGTTACTCCGTGAATTTCC 59.629 47.826 0.00 0.00 0.00 3.13
1604 1762 4.566004 CTCTGTTACTCCGTGAATTTCCA 58.434 43.478 0.00 0.00 0.00 3.53
1605 1763 4.566004 TCTGTTACTCCGTGAATTTCCAG 58.434 43.478 0.00 0.00 0.00 3.86
1606 1764 3.670625 TGTTACTCCGTGAATTTCCAGG 58.329 45.455 0.00 0.00 0.00 4.45
1607 1765 3.071892 TGTTACTCCGTGAATTTCCAGGT 59.928 43.478 7.01 0.00 0.00 4.00
1608 1766 4.283978 TGTTACTCCGTGAATTTCCAGGTA 59.716 41.667 7.01 0.00 0.00 3.08
1609 1767 5.046159 TGTTACTCCGTGAATTTCCAGGTAT 60.046 40.000 7.01 1.50 0.00 2.73
1610 1768 4.138487 ACTCCGTGAATTTCCAGGTATC 57.862 45.455 7.01 0.00 0.00 2.24
1611 1769 3.775316 ACTCCGTGAATTTCCAGGTATCT 59.225 43.478 7.01 0.00 0.00 1.98
1612 1770 4.141914 ACTCCGTGAATTTCCAGGTATCTC 60.142 45.833 7.01 0.00 0.00 2.75
1613 1771 3.772572 TCCGTGAATTTCCAGGTATCTCA 59.227 43.478 7.01 0.00 0.00 3.27
1614 1772 4.224147 TCCGTGAATTTCCAGGTATCTCAA 59.776 41.667 7.01 0.00 0.00 3.02
1615 1773 4.572389 CCGTGAATTTCCAGGTATCTCAAG 59.428 45.833 0.00 0.00 0.00 3.02
1616 1774 4.572389 CGTGAATTTCCAGGTATCTCAAGG 59.428 45.833 0.00 0.00 0.00 3.61
1617 1775 5.501156 GTGAATTTCCAGGTATCTCAAGGT 58.499 41.667 0.00 0.00 0.00 3.50
1618 1776 5.946377 GTGAATTTCCAGGTATCTCAAGGTT 59.054 40.000 0.00 0.00 0.00 3.50
1619 1777 5.945784 TGAATTTCCAGGTATCTCAAGGTTG 59.054 40.000 0.00 0.00 0.00 3.77
1620 1778 4.301072 TTTCCAGGTATCTCAAGGTTGG 57.699 45.455 0.00 0.00 0.00 3.77
1621 1779 2.196595 TCCAGGTATCTCAAGGTTGGG 58.803 52.381 0.00 0.00 0.00 4.12
1622 1780 1.408822 CCAGGTATCTCAAGGTTGGGC 60.409 57.143 0.00 0.00 0.00 5.36
1623 1781 1.281867 CAGGTATCTCAAGGTTGGGCA 59.718 52.381 0.00 0.00 0.00 5.36
1624 1782 1.561542 AGGTATCTCAAGGTTGGGCAG 59.438 52.381 0.00 0.00 0.00 4.85
1625 1783 1.383523 GTATCTCAAGGTTGGGCAGC 58.616 55.000 0.00 0.00 0.00 5.25
1626 1784 1.065126 GTATCTCAAGGTTGGGCAGCT 60.065 52.381 0.00 0.00 33.27 4.24
1627 1785 0.323178 ATCTCAAGGTTGGGCAGCTG 60.323 55.000 10.11 10.11 31.79 4.24
1628 1786 2.598394 TCAAGGTTGGGCAGCTGC 60.598 61.111 30.88 30.88 41.14 5.25
1638 1796 3.818787 GCAGCTGCCCGATTGGTG 61.819 66.667 28.76 0.00 36.04 4.17
1639 1797 3.136123 CAGCTGCCCGATTGGTGG 61.136 66.667 0.00 0.00 36.04 4.61
1646 1804 4.147701 CCGATTGGTGGGAGATGC 57.852 61.111 0.00 0.00 0.00 3.91
1647 1805 1.224315 CCGATTGGTGGGAGATGCA 59.776 57.895 0.00 0.00 0.00 3.96
1648 1806 1.097547 CCGATTGGTGGGAGATGCAC 61.098 60.000 0.00 0.00 0.00 4.57
1649 1807 1.431488 CGATTGGTGGGAGATGCACG 61.431 60.000 0.00 0.00 0.00 5.34
1650 1808 1.718757 GATTGGTGGGAGATGCACGC 61.719 60.000 0.00 0.00 0.00 5.34
1651 1809 2.482796 ATTGGTGGGAGATGCACGCA 62.483 55.000 0.00 0.00 29.87 5.24
1652 1810 2.124570 GGTGGGAGATGCACGCAT 60.125 61.111 3.71 3.71 39.69 4.73
1653 1811 2.475466 GGTGGGAGATGCACGCATG 61.475 63.158 9.70 0.00 36.70 4.06
1654 1812 1.450134 GTGGGAGATGCACGCATGA 60.450 57.895 9.70 0.00 36.70 3.07
1655 1813 1.026182 GTGGGAGATGCACGCATGAA 61.026 55.000 9.70 0.00 36.70 2.57
1656 1814 0.107066 TGGGAGATGCACGCATGAAT 60.107 50.000 9.70 0.00 36.70 2.57
1657 1815 1.027357 GGGAGATGCACGCATGAATT 58.973 50.000 9.70 0.00 36.70 2.17
1658 1816 1.268896 GGGAGATGCACGCATGAATTG 60.269 52.381 9.70 0.00 36.70 2.32
1672 1830 4.862350 CATGAATTGCAGTCTGTGTTTCA 58.138 39.130 12.66 12.66 0.00 2.69
1673 1831 4.979943 TGAATTGCAGTCTGTGTTTCAA 57.020 36.364 0.93 0.00 0.00 2.69
1674 1832 4.923893 TGAATTGCAGTCTGTGTTTCAAG 58.076 39.130 0.93 0.00 0.00 3.02
1675 1833 4.398988 TGAATTGCAGTCTGTGTTTCAAGT 59.601 37.500 0.93 0.00 0.00 3.16
1676 1834 5.588246 TGAATTGCAGTCTGTGTTTCAAGTA 59.412 36.000 0.93 0.00 0.00 2.24
1677 1835 6.262944 TGAATTGCAGTCTGTGTTTCAAGTAT 59.737 34.615 0.93 0.00 0.00 2.12
1678 1836 7.443879 TGAATTGCAGTCTGTGTTTCAAGTATA 59.556 33.333 0.93 0.00 0.00 1.47
1679 1837 6.539649 TTGCAGTCTGTGTTTCAAGTATAC 57.460 37.500 0.93 0.00 0.00 1.47
1680 1838 5.606505 TGCAGTCTGTGTTTCAAGTATACA 58.393 37.500 5.50 0.00 0.00 2.29
1681 1839 6.052360 TGCAGTCTGTGTTTCAAGTATACAA 58.948 36.000 5.50 0.00 0.00 2.41
1682 1840 6.018262 TGCAGTCTGTGTTTCAAGTATACAAC 60.018 38.462 5.50 1.41 0.00 3.32
1683 1841 6.202954 GCAGTCTGTGTTTCAAGTATACAACT 59.797 38.462 5.50 0.00 41.49 3.16
1684 1842 7.567571 CAGTCTGTGTTTCAAGTATACAACTG 58.432 38.462 5.50 0.00 38.88 3.16
1685 1843 7.438160 CAGTCTGTGTTTCAAGTATACAACTGA 59.562 37.037 5.50 2.16 38.88 3.41
1686 1844 7.985184 AGTCTGTGTTTCAAGTATACAACTGAA 59.015 33.333 5.50 8.09 38.88 3.02
1687 1845 8.276325 GTCTGTGTTTCAAGTATACAACTGAAG 58.724 37.037 5.50 0.13 38.88 3.02
1688 1846 8.201464 TCTGTGTTTCAAGTATACAACTGAAGA 58.799 33.333 5.50 2.25 38.88 2.87
1689 1847 8.138365 TGTGTTTCAAGTATACAACTGAAGAC 57.862 34.615 5.50 10.83 38.88 3.01
1690 1848 7.766738 TGTGTTTCAAGTATACAACTGAAGACA 59.233 33.333 5.50 12.72 38.88 3.41
1691 1849 8.062448 GTGTTTCAAGTATACAACTGAAGACAC 58.938 37.037 22.83 22.83 38.88 3.67
1692 1850 7.042992 TGTTTCAAGTATACAACTGAAGACACG 60.043 37.037 5.50 0.00 38.88 4.49
1693 1851 6.080648 TCAAGTATACAACTGAAGACACGT 57.919 37.500 5.50 0.00 38.88 4.49
1694 1852 5.918576 TCAAGTATACAACTGAAGACACGTG 59.081 40.000 15.48 15.48 38.88 4.49
1695 1853 4.806330 AGTATACAACTGAAGACACGTGG 58.194 43.478 21.57 2.84 36.93 4.94
1696 1854 4.521639 AGTATACAACTGAAGACACGTGGA 59.478 41.667 21.57 0.00 36.93 4.02
1697 1855 2.910688 ACAACTGAAGACACGTGGAT 57.089 45.000 21.57 4.53 0.00 3.41
1698 1856 2.483876 ACAACTGAAGACACGTGGATG 58.516 47.619 21.57 8.12 0.00 3.51
1699 1857 2.158957 ACAACTGAAGACACGTGGATGT 60.159 45.455 21.57 8.77 34.78 3.06
1700 1858 2.872245 CAACTGAAGACACGTGGATGTT 59.128 45.455 21.57 12.17 31.24 2.71
1701 1859 3.194005 ACTGAAGACACGTGGATGTTT 57.806 42.857 21.57 6.25 31.24 2.83
1702 1860 3.131396 ACTGAAGACACGTGGATGTTTC 58.869 45.455 21.57 14.82 31.24 2.78
1703 1861 2.480419 CTGAAGACACGTGGATGTTTCC 59.520 50.000 21.57 1.15 42.94 3.13
1713 1871 2.660189 GGATGTTTCCAAGCCATGTG 57.340 50.000 0.00 0.00 42.12 3.21
1714 1872 1.205417 GGATGTTTCCAAGCCATGTGG 59.795 52.381 0.00 0.00 42.12 4.17
1715 1873 2.170166 GATGTTTCCAAGCCATGTGGA 58.830 47.619 2.55 0.00 43.57 4.02
1733 1891 3.764237 GGAATACATCCGGCTAAAGGA 57.236 47.619 0.00 0.00 38.79 3.36
1735 1893 4.254492 GGAATACATCCGGCTAAAGGATC 58.746 47.826 0.00 0.00 46.04 3.36
1736 1894 3.983044 ATACATCCGGCTAAAGGATCC 57.017 47.619 2.48 2.48 46.04 3.36
1737 1895 1.507140 ACATCCGGCTAAAGGATCCA 58.493 50.000 15.82 0.00 46.04 3.41
1738 1896 2.057922 ACATCCGGCTAAAGGATCCAT 58.942 47.619 15.82 0.00 46.04 3.41
1739 1897 2.443255 ACATCCGGCTAAAGGATCCATT 59.557 45.455 15.82 11.41 46.04 3.16
1740 1898 3.650942 ACATCCGGCTAAAGGATCCATTA 59.349 43.478 15.82 12.02 46.04 1.90
1741 1899 4.104102 ACATCCGGCTAAAGGATCCATTAA 59.896 41.667 15.82 0.00 46.04 1.40
1742 1900 4.993705 TCCGGCTAAAGGATCCATTAAT 57.006 40.909 15.82 0.00 31.86 1.40
1743 1901 6.012858 ACATCCGGCTAAAGGATCCATTAATA 60.013 38.462 15.82 0.00 46.04 0.98
1744 1902 6.442541 TCCGGCTAAAGGATCCATTAATAA 57.557 37.500 15.82 0.00 31.86 1.40
1745 1903 7.027874 TCCGGCTAAAGGATCCATTAATAAT 57.972 36.000 15.82 0.00 31.86 1.28
1746 1904 7.466804 TCCGGCTAAAGGATCCATTAATAATT 58.533 34.615 15.82 0.00 31.86 1.40
1747 1905 8.607713 TCCGGCTAAAGGATCCATTAATAATTA 58.392 33.333 15.82 0.00 31.86 1.40
1748 1906 8.893727 CCGGCTAAAGGATCCATTAATAATTAG 58.106 37.037 15.82 9.58 0.00 1.73
1749 1907 9.667107 CGGCTAAAGGATCCATTAATAATTAGA 57.333 33.333 15.82 0.00 0.00 2.10
1769 1927 8.903059 ATTAGATATTCGGAATTAGAGGGAGT 57.097 34.615 8.76 0.00 0.00 3.85
1770 1928 6.844097 AGATATTCGGAATTAGAGGGAGTC 57.156 41.667 8.76 0.00 0.00 3.36
1771 1929 5.717654 AGATATTCGGAATTAGAGGGAGTCC 59.282 44.000 8.76 0.00 0.00 3.85
1773 1931 2.667470 TCGGAATTAGAGGGAGTCCTG 58.333 52.381 9.58 0.00 45.05 3.86
1774 1932 1.069358 CGGAATTAGAGGGAGTCCTGC 59.931 57.143 9.58 1.20 45.05 4.85
1775 1933 1.069358 GGAATTAGAGGGAGTCCTGCG 59.931 57.143 9.58 0.00 45.05 5.18
1776 1934 0.466124 AATTAGAGGGAGTCCTGCGC 59.534 55.000 9.58 0.00 45.05 6.09
1777 1935 1.739338 ATTAGAGGGAGTCCTGCGCG 61.739 60.000 9.58 0.00 45.05 6.86
1783 1941 4.863925 GAGTCCTGCGCGCCTCTC 62.864 72.222 30.77 23.86 0.00 3.20
1794 1952 4.828925 GCCTCTCCACTGAGCGCC 62.829 72.222 2.29 0.00 38.58 6.53
1795 1953 3.073735 CCTCTCCACTGAGCGCCT 61.074 66.667 2.29 0.00 38.58 5.52
1796 1954 2.493973 CTCTCCACTGAGCGCCTC 59.506 66.667 2.29 1.22 38.58 4.70
1797 1955 3.071206 TCTCCACTGAGCGCCTCC 61.071 66.667 2.29 0.00 38.58 4.30
1798 1956 4.154347 CTCCACTGAGCGCCTCCC 62.154 72.222 2.29 0.00 0.00 4.30
1845 2003 4.966787 GCCCCAGCGGACACCAAA 62.967 66.667 0.00 0.00 0.00 3.28
1846 2004 2.983592 CCCCAGCGGACACCAAAC 60.984 66.667 0.00 0.00 0.00 2.93
1847 2005 2.983592 CCCAGCGGACACCAAACC 60.984 66.667 0.00 0.00 0.00 3.27
1848 2006 2.113139 CCAGCGGACACCAAACCT 59.887 61.111 0.00 0.00 0.00 3.50
1849 2007 1.966451 CCAGCGGACACCAAACCTC 60.966 63.158 0.00 0.00 0.00 3.85
1850 2008 2.030562 AGCGGACACCAAACCTCG 59.969 61.111 0.00 0.00 0.00 4.63
1851 2009 2.280592 GCGGACACCAAACCTCGT 60.281 61.111 0.00 0.00 0.00 4.18
1852 2010 2.315386 GCGGACACCAAACCTCGTC 61.315 63.158 0.00 0.00 0.00 4.20
1853 2011 2.019951 CGGACACCAAACCTCGTCG 61.020 63.158 0.00 0.00 0.00 5.12
1854 2012 1.666872 GGACACCAAACCTCGTCGG 60.667 63.158 0.00 0.00 39.35 4.79
1855 2013 2.280592 ACACCAAACCTCGTCGGC 60.281 61.111 0.00 0.00 35.61 5.54
1856 2014 2.030562 CACCAAACCTCGTCGGCT 59.969 61.111 0.00 0.00 35.61 5.52
1857 2015 1.597027 CACCAAACCTCGTCGGCTT 60.597 57.895 0.00 0.00 35.61 4.35
1858 2016 1.301479 ACCAAACCTCGTCGGCTTC 60.301 57.895 0.00 0.00 35.61 3.86
1859 2017 2.033194 CCAAACCTCGTCGGCTTCC 61.033 63.158 0.00 0.00 35.61 3.46
1902 2060 4.944372 CGCTCCCGTATGGCGTCC 62.944 72.222 0.00 0.00 43.28 4.79
1903 2061 3.845259 GCTCCCGTATGGCGTCCA 61.845 66.667 0.00 1.01 39.32 4.02
1904 2062 3.138625 CTCCCGTATGGCGTCCAT 58.861 61.111 14.43 14.43 46.99 3.41
1905 2063 1.300931 CTCCCGTATGGCGTCCATG 60.301 63.158 18.08 5.70 44.84 3.66
1906 2064 2.280797 CCCGTATGGCGTCCATGG 60.281 66.667 18.08 4.97 44.84 3.66
1907 2065 2.504032 CCGTATGGCGTCCATGGT 59.496 61.111 12.58 0.00 44.84 3.55
1908 2066 1.594293 CCGTATGGCGTCCATGGTC 60.594 63.158 12.58 5.07 44.84 4.02
1909 2067 1.441729 CGTATGGCGTCCATGGTCT 59.558 57.895 12.58 0.00 44.84 3.85
1910 2068 0.597637 CGTATGGCGTCCATGGTCTC 60.598 60.000 12.58 0.17 44.84 3.36
1911 2069 0.464036 GTATGGCGTCCATGGTCTCA 59.536 55.000 12.58 7.89 44.84 3.27
1912 2070 0.464036 TATGGCGTCCATGGTCTCAC 59.536 55.000 12.58 0.90 44.84 3.51
1913 2071 1.267574 ATGGCGTCCATGGTCTCACT 61.268 55.000 12.58 0.00 43.39 3.41
1914 2072 1.153549 GGCGTCCATGGTCTCACTC 60.154 63.158 12.58 0.00 0.00 3.51
1915 2073 1.608717 GGCGTCCATGGTCTCACTCT 61.609 60.000 12.58 0.00 0.00 3.24
1916 2074 0.179124 GCGTCCATGGTCTCACTCTC 60.179 60.000 12.58 0.00 0.00 3.20
1917 2075 1.468985 CGTCCATGGTCTCACTCTCT 58.531 55.000 12.58 0.00 0.00 3.10
1918 2076 1.133982 CGTCCATGGTCTCACTCTCTG 59.866 57.143 12.58 0.00 0.00 3.35
1919 2077 1.134848 GTCCATGGTCTCACTCTCTGC 60.135 57.143 12.58 0.00 0.00 4.26
1920 2078 0.177604 CCATGGTCTCACTCTCTGCC 59.822 60.000 2.57 0.00 0.00 4.85
1921 2079 0.179116 CATGGTCTCACTCTCTGCCG 60.179 60.000 0.00 0.00 0.00 5.69
1922 2080 1.326213 ATGGTCTCACTCTCTGCCGG 61.326 60.000 0.00 0.00 0.00 6.13
1923 2081 2.183046 GTCTCACTCTCTGCCGGC 59.817 66.667 22.73 22.73 0.00 6.13
1924 2082 2.036414 TCTCACTCTCTGCCGGCT 59.964 61.111 29.70 1.94 0.00 5.52
1925 2083 2.049185 TCTCACTCTCTGCCGGCTC 61.049 63.158 29.70 0.00 0.00 4.70
1926 2084 2.036414 TCACTCTCTGCCGGCTCT 59.964 61.111 29.70 0.00 0.00 4.09
1927 2085 1.603236 CTCACTCTCTGCCGGCTCTT 61.603 60.000 29.70 2.61 0.00 2.85
1928 2086 1.153667 CACTCTCTGCCGGCTCTTC 60.154 63.158 29.70 0.00 0.00 2.87
1929 2087 2.355193 ACTCTCTGCCGGCTCTTCC 61.355 63.158 29.70 0.00 0.00 3.46
1930 2088 2.038007 TCTCTGCCGGCTCTTCCT 59.962 61.111 29.70 0.00 0.00 3.36
1931 2089 2.015227 CTCTCTGCCGGCTCTTCCTC 62.015 65.000 29.70 0.00 0.00 3.71
1932 2090 3.077556 TCTGCCGGCTCTTCCTCC 61.078 66.667 29.70 0.00 0.00 4.30
1933 2091 3.080121 CTGCCGGCTCTTCCTCCT 61.080 66.667 29.70 0.00 0.00 3.69
1934 2092 3.077556 TGCCGGCTCTTCCTCCTC 61.078 66.667 29.70 0.00 0.00 3.71
1935 2093 3.855853 GCCGGCTCTTCCTCCTCC 61.856 72.222 22.15 0.00 0.00 4.30
1936 2094 3.157949 CCGGCTCTTCCTCCTCCC 61.158 72.222 0.00 0.00 0.00 4.30
1937 2095 3.157949 CGGCTCTTCCTCCTCCCC 61.158 72.222 0.00 0.00 0.00 4.81
1938 2096 3.157949 GGCTCTTCCTCCTCCCCG 61.158 72.222 0.00 0.00 0.00 5.73
1939 2097 2.042843 GCTCTTCCTCCTCCCCGA 60.043 66.667 0.00 0.00 0.00 5.14
1940 2098 2.131067 GCTCTTCCTCCTCCCCGAG 61.131 68.421 0.00 0.00 0.00 4.63
1941 2099 2.042843 TCTTCCTCCTCCCCGAGC 60.043 66.667 0.00 0.00 0.00 5.03
1942 2100 3.157949 CTTCCTCCTCCCCGAGCC 61.158 72.222 0.00 0.00 0.00 4.70
1943 2101 4.798682 TTCCTCCTCCCCGAGCCC 62.799 72.222 0.00 0.00 0.00 5.19
1977 2135 4.671569 CCGCCTAGGCCGCAGATC 62.672 72.222 28.09 0.00 37.98 2.75
1978 2136 4.671569 CGCCTAGGCCGCAGATCC 62.672 72.222 28.09 0.00 37.98 3.36
1979 2137 4.671569 GCCTAGGCCGCAGATCCG 62.672 72.222 24.19 0.00 34.56 4.18
1980 2138 4.671569 CCTAGGCCGCAGATCCGC 62.672 72.222 8.84 0.00 0.00 5.54
1981 2139 3.610669 CTAGGCCGCAGATCCGCT 61.611 66.667 0.00 0.00 0.00 5.52
1982 2140 3.565910 CTAGGCCGCAGATCCGCTC 62.566 68.421 0.00 0.00 0.00 5.03
1986 2144 4.292178 CCGCAGATCCGCTCCCTC 62.292 72.222 0.00 0.00 0.00 4.30
1987 2145 4.637489 CGCAGATCCGCTCCCTCG 62.637 72.222 0.00 0.00 0.00 4.63
1988 2146 4.959596 GCAGATCCGCTCCCTCGC 62.960 72.222 0.00 0.00 0.00 5.03
1989 2147 4.292178 CAGATCCGCTCCCTCGCC 62.292 72.222 0.00 0.00 0.00 5.54
2034 2192 3.511595 ACGCGCTTCGGTCCGATA 61.512 61.111 16.23 5.43 43.86 2.92
2035 2193 2.050351 CGCGCTTCGGTCCGATAT 60.050 61.111 16.23 0.00 35.23 1.63
2036 2194 2.365068 CGCGCTTCGGTCCGATATG 61.365 63.158 16.23 9.72 35.23 1.78
2037 2195 2.658707 GCGCTTCGGTCCGATATGC 61.659 63.158 16.23 17.70 35.23 3.14
2038 2196 2.022129 CGCTTCGGTCCGATATGCC 61.022 63.158 16.23 1.24 35.23 4.40
2039 2197 1.069090 GCTTCGGTCCGATATGCCA 59.931 57.895 16.23 0.00 35.23 4.92
2040 2198 0.946221 GCTTCGGTCCGATATGCCAG 60.946 60.000 16.23 9.43 35.23 4.85
2041 2199 0.319900 CTTCGGTCCGATATGCCAGG 60.320 60.000 16.23 0.00 35.23 4.45
2042 2200 2.357517 CGGTCCGATATGCCAGGC 60.358 66.667 4.91 3.66 0.00 4.85
2043 2201 2.032681 GGTCCGATATGCCAGGCC 59.967 66.667 9.64 0.00 0.00 5.19
2044 2202 2.032681 GTCCGATATGCCAGGCCC 59.967 66.667 9.64 0.00 0.00 5.80
2045 2203 3.249189 TCCGATATGCCAGGCCCC 61.249 66.667 9.64 0.00 0.00 5.80
2046 2204 4.704833 CCGATATGCCAGGCCCCG 62.705 72.222 9.64 6.92 0.00 5.73
2047 2205 4.704833 CGATATGCCAGGCCCCGG 62.705 72.222 9.64 0.42 0.00 5.73
2048 2206 4.351054 GATATGCCAGGCCCCGGG 62.351 72.222 15.80 15.80 0.00 5.73
2082 2240 3.470888 CCCCCTGTGGCGACTAGG 61.471 72.222 5.27 5.27 35.83 3.02
2083 2241 4.162690 CCCCTGTGGCGACTAGGC 62.163 72.222 6.62 0.00 46.95 3.93
2084 2242 3.077556 CCCTGTGGCGACTAGGCT 61.078 66.667 6.62 0.00 46.88 4.58
2085 2243 2.185350 CCTGTGGCGACTAGGCTG 59.815 66.667 0.00 0.00 46.88 4.85
2086 2244 2.185350 CTGTGGCGACTAGGCTGG 59.815 66.667 0.00 0.00 46.88 4.85
2087 2245 3.376935 CTGTGGCGACTAGGCTGGG 62.377 68.421 2.02 0.00 46.88 4.45
2088 2246 4.162690 GTGGCGACTAGGCTGGGG 62.163 72.222 2.02 0.00 46.88 4.96
2089 2247 4.715130 TGGCGACTAGGCTGGGGT 62.715 66.667 2.02 0.00 46.88 4.95
2090 2248 4.162690 GGCGACTAGGCTGGGGTG 62.163 72.222 2.02 0.00 42.90 4.61
2091 2249 4.162690 GCGACTAGGCTGGGGTGG 62.163 72.222 2.02 0.00 0.00 4.61
2092 2250 4.162690 CGACTAGGCTGGGGTGGC 62.163 72.222 2.02 0.00 0.00 5.01
2093 2251 3.009115 GACTAGGCTGGGGTGGCA 61.009 66.667 2.02 0.00 34.73 4.92
2094 2252 3.011517 ACTAGGCTGGGGTGGCAG 61.012 66.667 2.02 0.00 34.73 4.85
2095 2253 2.688666 CTAGGCTGGGGTGGCAGA 60.689 66.667 0.00 0.00 34.73 4.26
2096 2254 3.009115 TAGGCTGGGGTGGCAGAC 61.009 66.667 0.00 0.00 34.73 3.51
2106 2264 4.329545 TGGCAGACCAAGACCGGC 62.330 66.667 0.00 0.00 45.37 6.13
2107 2265 4.329545 GGCAGACCAAGACCGGCA 62.330 66.667 0.00 0.00 35.26 5.69
2108 2266 2.743928 GCAGACCAAGACCGGCAG 60.744 66.667 0.00 0.00 0.00 4.85
2109 2267 2.046892 CAGACCAAGACCGGCAGG 60.047 66.667 0.00 0.00 45.13 4.85
2110 2268 4.021925 AGACCAAGACCGGCAGGC 62.022 66.667 0.00 0.00 42.76 4.85
2128 2286 4.083862 GGCCTCGGAGTCCCACAC 62.084 72.222 2.80 0.00 0.00 3.82
2129 2287 3.311110 GCCTCGGAGTCCCACACA 61.311 66.667 2.80 0.00 0.00 3.72
2130 2288 2.657237 CCTCGGAGTCCCACACAC 59.343 66.667 2.80 0.00 0.00 3.82
2131 2289 2.657237 CTCGGAGTCCCACACACC 59.343 66.667 2.80 0.00 32.48 4.16
2134 2292 4.699522 GGAGTCCCACACACCGGC 62.700 72.222 0.00 0.00 0.00 6.13
2135 2293 4.699522 GAGTCCCACACACCGGCC 62.700 72.222 0.00 0.00 0.00 6.13
2137 2295 4.699522 GTCCCACACACCGGCCTC 62.700 72.222 0.00 0.00 0.00 4.70
2184 2342 3.365265 GGCTTCACCTTGCCCACG 61.365 66.667 0.00 0.00 43.11 4.94
2185 2343 4.043200 GCTTCACCTTGCCCACGC 62.043 66.667 0.00 0.00 0.00 5.34
2186 2344 2.281761 CTTCACCTTGCCCACGCT 60.282 61.111 0.00 0.00 35.36 5.07
2187 2345 2.594303 TTCACCTTGCCCACGCTG 60.594 61.111 0.00 0.00 35.36 5.18
2188 2346 3.113514 TTCACCTTGCCCACGCTGA 62.114 57.895 0.00 0.00 35.36 4.26
2189 2347 3.052082 CACCTTGCCCACGCTGAG 61.052 66.667 0.00 0.00 35.36 3.35
2190 2348 4.335647 ACCTTGCCCACGCTGAGG 62.336 66.667 0.00 0.00 41.80 3.86
2200 2358 3.790437 CGCTGAGGCCACCCAGAT 61.790 66.667 19.79 0.00 34.44 2.90
2201 2359 2.191641 GCTGAGGCCACCCAGATC 59.808 66.667 19.79 1.80 32.37 2.75
2202 2360 2.914289 CTGAGGCCACCCAGATCC 59.086 66.667 5.01 0.00 32.37 3.36
2203 2361 1.997311 CTGAGGCCACCCAGATCCA 60.997 63.158 5.01 0.00 32.37 3.41
2204 2362 1.541118 TGAGGCCACCCAGATCCAA 60.541 57.895 5.01 0.00 0.00 3.53
2205 2363 1.077429 GAGGCCACCCAGATCCAAC 60.077 63.158 5.01 0.00 0.00 3.77
2206 2364 1.852157 AGGCCACCCAGATCCAACA 60.852 57.895 5.01 0.00 0.00 3.33
2207 2365 1.217057 AGGCCACCCAGATCCAACAT 61.217 55.000 5.01 0.00 0.00 2.71
2208 2366 0.753111 GGCCACCCAGATCCAACATC 60.753 60.000 0.00 0.00 0.00 3.06
2209 2367 0.753111 GCCACCCAGATCCAACATCC 60.753 60.000 0.00 0.00 0.00 3.51
2210 2368 0.106519 CCACCCAGATCCAACATCCC 60.107 60.000 0.00 0.00 0.00 3.85
2211 2369 0.464373 CACCCAGATCCAACATCCCG 60.464 60.000 0.00 0.00 0.00 5.14
2212 2370 1.526917 CCCAGATCCAACATCCCGC 60.527 63.158 0.00 0.00 0.00 6.13
2213 2371 1.526917 CCAGATCCAACATCCCGCC 60.527 63.158 0.00 0.00 0.00 6.13
2214 2372 1.889105 CAGATCCAACATCCCGCCG 60.889 63.158 0.00 0.00 0.00 6.46
2215 2373 2.591715 GATCCAACATCCCGCCGG 60.592 66.667 0.00 0.00 0.00 6.13
2216 2374 3.087253 ATCCAACATCCCGCCGGA 61.087 61.111 5.05 0.00 44.33 5.14
2217 2375 2.996168 GATCCAACATCCCGCCGGAG 62.996 65.000 5.05 0.00 43.12 4.63
2219 2377 4.473520 CAACATCCCGCCGGAGCT 62.474 66.667 5.05 0.00 43.12 4.09
2220 2378 4.473520 AACATCCCGCCGGAGCTG 62.474 66.667 5.05 0.80 43.12 4.24
2235 2393 3.494336 CTGCACGGCTGCTGCTAC 61.494 66.667 15.64 0.00 44.57 3.58
2236 2394 4.312941 TGCACGGCTGCTGCTACA 62.313 61.111 15.64 1.28 44.57 2.74
2237 2395 3.049674 GCACGGCTGCTGCTACAA 61.050 61.111 15.64 0.00 40.63 2.41
2238 2396 2.863153 CACGGCTGCTGCTACAAC 59.137 61.111 15.64 0.00 39.59 3.32
2239 2397 1.669115 CACGGCTGCTGCTACAACT 60.669 57.895 15.64 0.00 39.59 3.16
2240 2398 1.669115 ACGGCTGCTGCTACAACTG 60.669 57.895 15.64 0.34 39.59 3.16
2241 2399 1.669115 CGGCTGCTGCTACAACTGT 60.669 57.895 15.64 0.00 39.59 3.55
2242 2400 1.871772 GGCTGCTGCTACAACTGTG 59.128 57.895 15.64 0.00 39.59 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.356818 CTTCCTCGTCCATCTCGGCC 62.357 65.000 0.00 0.00 33.14 6.13
1 2 1.066587 CTTCCTCGTCCATCTCGGC 59.933 63.158 0.00 0.00 33.14 5.54
2 3 1.066587 GCTTCCTCGTCCATCTCGG 59.933 63.158 0.00 0.00 0.00 4.63
3 4 1.066587 GGCTTCCTCGTCCATCTCG 59.933 63.158 0.00 0.00 0.00 4.04
6 7 0.533755 CCATGGCTTCCTCGTCCATC 60.534 60.000 0.00 0.00 38.46 3.51
7 8 1.528824 CCATGGCTTCCTCGTCCAT 59.471 57.895 0.00 0.00 40.98 3.41
8 9 2.989639 CCATGGCTTCCTCGTCCA 59.010 61.111 0.00 0.00 0.00 4.02
9 10 2.514824 GCCATGGCTTCCTCGTCC 60.515 66.667 29.98 0.00 38.26 4.79
10 11 2.892425 CGCCATGGCTTCCTCGTC 60.892 66.667 33.07 2.52 39.32 4.20
12 13 4.845580 AGCGCCATGGCTTCCTCG 62.846 66.667 33.07 18.06 41.39 4.63
13 14 3.207669 CAGCGCCATGGCTTCCTC 61.208 66.667 33.07 16.55 42.53 3.71
138 139 2.131067 CCTCTCCGCCCTTCTCTCC 61.131 68.421 0.00 0.00 0.00 3.71
144 145 3.684628 TCCTCCCTCTCCGCCCTT 61.685 66.667 0.00 0.00 0.00 3.95
265 266 1.487231 CGTCAAGAAACCGCTCGTG 59.513 57.895 0.00 0.00 0.00 4.35
328 329 6.084925 ACTACTACTCGTCATTTTTCGACTG 58.915 40.000 0.00 0.00 32.65 3.51
383 387 4.160642 TCTACTTCGTCCACATAGCCTA 57.839 45.455 0.00 0.00 0.00 3.93
421 425 5.637006 TGATACAAAATGCGTAAGGCTTT 57.363 34.783 4.45 0.00 44.05 3.51
552 569 1.444553 CGGCCGCCGCAAAATAAAA 60.445 52.632 20.79 0.00 41.17 1.52
600 617 0.468226 ACCGTGCTGGAAGAGTCAAA 59.532 50.000 2.38 0.00 42.00 2.69
608 625 3.627395 AATGAGAATACCGTGCTGGAA 57.373 42.857 2.38 0.00 42.00 3.53
612 629 5.672819 GCGTTAAAAATGAGAATACCGTGCT 60.673 40.000 0.00 0.00 0.00 4.40
615 632 4.725737 GCGCGTTAAAAATGAGAATACCGT 60.726 41.667 8.43 0.00 0.00 4.83
672 689 4.084013 GGTTGTTTCACAGTCGGTCTATTG 60.084 45.833 0.00 0.00 0.00 1.90
675 692 2.431419 TGGTTGTTTCACAGTCGGTCTA 59.569 45.455 0.00 0.00 0.00 2.59
676 693 1.208535 TGGTTGTTTCACAGTCGGTCT 59.791 47.619 0.00 0.00 0.00 3.85
677 694 1.658994 TGGTTGTTTCACAGTCGGTC 58.341 50.000 0.00 0.00 0.00 4.79
678 695 2.158813 AGATGGTTGTTTCACAGTCGGT 60.159 45.455 0.00 0.00 0.00 4.69
688 705 3.181480 CCAACGTGGAAAGATGGTTGTTT 60.181 43.478 0.00 0.00 40.96 2.83
711 730 3.039202 GCGTTCATTCCAGCCCACG 62.039 63.158 0.00 0.00 0.00 4.94
714 733 3.056313 GCTGCGTTCATTCCAGCCC 62.056 63.158 0.62 0.00 44.60 5.19
719 738 2.044946 AGGGGCTGCGTTCATTCC 60.045 61.111 0.00 0.00 0.00 3.01
741 760 0.613292 TCTGCTTCTTCCGCTCCTCT 60.613 55.000 0.00 0.00 0.00 3.69
742 761 0.179113 CTCTGCTTCTTCCGCTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
743 762 0.902516 ACTCTGCTTCTTCCGCTCCT 60.903 55.000 0.00 0.00 0.00 3.69
744 763 0.459411 GACTCTGCTTCTTCCGCTCC 60.459 60.000 0.00 0.00 0.00 4.70
778 798 7.397892 TCATTCTTTTTGTGTTGACTGGTTA 57.602 32.000 0.00 0.00 0.00 2.85
782 802 7.420002 TCTCATCATTCTTTTTGTGTTGACTG 58.580 34.615 0.00 0.00 0.00 3.51
793 813 6.149973 TCTGCGAATGTTCTCATCATTCTTTT 59.850 34.615 13.95 0.00 44.93 2.27
796 816 4.569966 GTCTGCGAATGTTCTCATCATTCT 59.430 41.667 13.95 0.00 44.93 2.40
818 838 1.920835 GAGGCTGAGGTGGAAGGGT 60.921 63.158 0.00 0.00 0.00 4.34
838 873 1.606601 GGTGGAAGGGGTCAAAGGC 60.607 63.158 0.00 0.00 0.00 4.35
840 875 0.187361 TTGGGTGGAAGGGGTCAAAG 59.813 55.000 0.00 0.00 0.00 2.77
876 917 8.478066 GGTGTGGAGCTATATATATTGTGATGA 58.522 37.037 0.00 0.00 0.00 2.92
883 924 6.640518 CGTTGGGTGTGGAGCTATATATATT 58.359 40.000 0.00 0.00 0.00 1.28
890 931 1.078426 GCGTTGGGTGTGGAGCTAT 60.078 57.895 0.00 0.00 0.00 2.97
891 932 2.345991 GCGTTGGGTGTGGAGCTA 59.654 61.111 0.00 0.00 0.00 3.32
907 950 4.336713 AGAGGTCTTTTTGTGTTTCTCTGC 59.663 41.667 0.00 0.00 0.00 4.26
912 962 4.877323 ACGAGAGGTCTTTTTGTGTTTC 57.123 40.909 0.00 0.00 0.00 2.78
926 1006 2.125350 GGCCTGAGCAACGAGAGG 60.125 66.667 0.00 0.00 42.56 3.69
965 1053 0.179194 CGACGACGAAGAGAGGGAAC 60.179 60.000 0.00 0.00 42.66 3.62
966 1054 1.919956 GCGACGACGAAGAGAGGGAA 61.920 60.000 12.29 0.00 42.66 3.97
967 1055 2.396955 GCGACGACGAAGAGAGGGA 61.397 63.158 12.29 0.00 42.66 4.20
968 1056 2.100603 GCGACGACGAAGAGAGGG 59.899 66.667 12.29 0.00 42.66 4.30
1003 1100 0.109086 CGAGCGCTGGAAGAAGAAGA 60.109 55.000 18.48 0.00 34.07 2.87
1117 1220 0.318441 TCCTTCACTTCGCTGGACAG 59.682 55.000 0.00 0.00 0.00 3.51
1128 1231 2.526873 ACGGCCTGGTCCTTCACT 60.527 61.111 0.00 0.00 0.00 3.41
1227 1336 2.989639 CATCAGTTCCCGGCCTCA 59.010 61.111 0.00 0.00 0.00 3.86
1245 1354 4.921470 TTCCGATTCTAAGAAAACGCTG 57.079 40.909 0.00 0.00 0.00 5.18
1249 1358 7.590279 TCAACCAATTCCGATTCTAAGAAAAC 58.410 34.615 0.00 0.00 0.00 2.43
1250 1359 7.753309 TCAACCAATTCCGATTCTAAGAAAA 57.247 32.000 0.00 0.00 0.00 2.29
1252 1361 7.753309 TTTCAACCAATTCCGATTCTAAGAA 57.247 32.000 0.00 0.00 0.00 2.52
1253 1362 7.753309 TTTTCAACCAATTCCGATTCTAAGA 57.247 32.000 0.00 0.00 0.00 2.10
1255 1364 9.238368 ACTATTTTCAACCAATTCCGATTCTAA 57.762 29.630 0.00 0.00 0.00 2.10
1256 1365 8.673711 CACTATTTTCAACCAATTCCGATTCTA 58.326 33.333 0.00 0.00 0.00 2.10
1259 1368 7.461182 TCACTATTTTCAACCAATTCCGATT 57.539 32.000 0.00 0.00 0.00 3.34
1260 1369 7.416664 CCATCACTATTTTCAACCAATTCCGAT 60.417 37.037 0.00 0.00 0.00 4.18
1263 1372 6.154363 TCCCATCACTATTTTCAACCAATTCC 59.846 38.462 0.00 0.00 0.00 3.01
1264 1373 7.169158 TCCCATCACTATTTTCAACCAATTC 57.831 36.000 0.00 0.00 0.00 2.17
1266 1375 6.324770 GGATCCCATCACTATTTTCAACCAAT 59.675 38.462 0.00 0.00 0.00 3.16
1268 1377 5.200483 GGATCCCATCACTATTTTCAACCA 58.800 41.667 0.00 0.00 0.00 3.67
1272 1381 9.739276 GTATTATGGATCCCATCACTATTTTCA 57.261 33.333 9.90 0.00 40.74 2.69
1273 1382 9.965902 AGTATTATGGATCCCATCACTATTTTC 57.034 33.333 9.90 0.00 40.74 2.29
1276 1385 8.894592 ACAAGTATTATGGATCCCATCACTATT 58.105 33.333 9.90 0.00 40.74 1.73
1279 1388 6.770286 ACAAGTATTATGGATCCCATCACT 57.230 37.500 9.90 3.35 40.74 3.41
1281 1390 7.022496 TCCTACAAGTATTATGGATCCCATCA 58.978 38.462 9.90 0.00 40.74 3.07
1282 1391 7.496346 TCCTACAAGTATTATGGATCCCATC 57.504 40.000 9.90 0.00 40.74 3.51
1295 1404 7.504911 ACCACTGAACGTATATCCTACAAGTAT 59.495 37.037 0.00 0.00 0.00 2.12
1296 1405 6.830324 ACCACTGAACGTATATCCTACAAGTA 59.170 38.462 0.00 0.00 0.00 2.24
1297 1406 5.655532 ACCACTGAACGTATATCCTACAAGT 59.344 40.000 0.00 0.00 0.00 3.16
1298 1407 6.145338 ACCACTGAACGTATATCCTACAAG 57.855 41.667 0.00 0.00 0.00 3.16
1299 1408 7.056006 TCTACCACTGAACGTATATCCTACAA 58.944 38.462 0.00 0.00 0.00 2.41
1300 1409 6.594744 TCTACCACTGAACGTATATCCTACA 58.405 40.000 0.00 0.00 0.00 2.74
1301 1410 7.361885 CCATCTACCACTGAACGTATATCCTAC 60.362 44.444 0.00 0.00 0.00 3.18
1302 1411 6.657966 CCATCTACCACTGAACGTATATCCTA 59.342 42.308 0.00 0.00 0.00 2.94
1303 1412 5.477291 CCATCTACCACTGAACGTATATCCT 59.523 44.000 0.00 0.00 0.00 3.24
1304 1413 5.243283 ACCATCTACCACTGAACGTATATCC 59.757 44.000 0.00 0.00 0.00 2.59
1305 1414 6.207025 AGACCATCTACCACTGAACGTATATC 59.793 42.308 0.00 0.00 0.00 1.63
1306 1415 6.069331 AGACCATCTACCACTGAACGTATAT 58.931 40.000 0.00 0.00 0.00 0.86
1307 1416 5.443283 AGACCATCTACCACTGAACGTATA 58.557 41.667 0.00 0.00 0.00 1.47
1308 1417 4.279145 AGACCATCTACCACTGAACGTAT 58.721 43.478 0.00 0.00 0.00 3.06
1311 1446 2.755655 AGAGACCATCTACCACTGAACG 59.244 50.000 0.00 0.00 36.10 3.95
1313 1448 3.099905 CCAGAGACCATCTACCACTGAA 58.900 50.000 0.00 0.00 36.10 3.02
1329 1464 2.163818 TGTAGCAAAACGGACCAGAG 57.836 50.000 0.00 0.00 0.00 3.35
1331 1466 3.701532 TTTTGTAGCAAAACGGACCAG 57.298 42.857 3.26 0.00 0.00 4.00
1333 1468 5.366829 AGTATTTTGTAGCAAAACGGACC 57.633 39.130 8.89 0.00 0.00 4.46
1334 1470 6.203647 ACAAGTATTTTGTAGCAAAACGGAC 58.796 36.000 8.89 7.96 0.00 4.79
1336 1472 7.133513 TGTACAAGTATTTTGTAGCAAAACGG 58.866 34.615 8.89 1.78 35.77 4.44
1338 1474 8.347035 TCCTGTACAAGTATTTTGTAGCAAAAC 58.653 33.333 8.89 0.00 35.77 2.43
1341 1477 8.511321 CAATCCTGTACAAGTATTTTGTAGCAA 58.489 33.333 0.00 0.00 35.77 3.91
1343 1479 8.040716 ACAATCCTGTACAAGTATTTTGTAGC 57.959 34.615 0.00 0.00 35.77 3.58
1411 1563 8.617809 GGCAAACGAAAGAATGAAGGTATATAA 58.382 33.333 0.00 0.00 0.00 0.98
1412 1564 7.227910 GGGCAAACGAAAGAATGAAGGTATATA 59.772 37.037 0.00 0.00 0.00 0.86
1436 1593 5.016173 TCCAATCAACAAATACTTCAGGGG 58.984 41.667 0.00 0.00 0.00 4.79
1468 1626 8.809066 TCAATTGTTCAAAGAATGGATCAAGAT 58.191 29.630 5.13 0.00 0.00 2.40
1488 1646 7.699391 GGTGACTATGATGTGAACAATCAATTG 59.301 37.037 0.00 0.00 43.26 2.32
1502 1660 5.107182 GCATCTTGAATCGGTGACTATGATG 60.107 44.000 0.00 0.00 0.00 3.07
1503 1661 4.993584 GCATCTTGAATCGGTGACTATGAT 59.006 41.667 0.00 0.00 0.00 2.45
1504 1662 4.100035 AGCATCTTGAATCGGTGACTATGA 59.900 41.667 0.00 0.00 0.00 2.15
1505 1663 4.375272 AGCATCTTGAATCGGTGACTATG 58.625 43.478 0.00 0.00 0.00 2.23
1506 1664 4.679373 AGCATCTTGAATCGGTGACTAT 57.321 40.909 0.00 0.00 0.00 2.12
1526 1684 5.788450 CTGGGATATTCTTAGTGCCAGTAG 58.212 45.833 4.26 0.00 43.84 2.57
1554 1712 1.918868 GACCGGACCCGAATTTGTGC 61.919 60.000 9.46 0.00 42.83 4.57
1555 1713 0.604243 TGACCGGACCCGAATTTGTG 60.604 55.000 9.46 0.00 42.83 3.33
1556 1714 0.326927 ATGACCGGACCCGAATTTGT 59.673 50.000 9.46 0.00 42.83 2.83
1557 1715 0.732571 CATGACCGGACCCGAATTTG 59.267 55.000 9.46 0.00 42.83 2.32
1558 1716 0.393808 CCATGACCGGACCCGAATTT 60.394 55.000 9.46 0.00 42.83 1.82
1559 1717 1.223487 CCATGACCGGACCCGAATT 59.777 57.895 9.46 0.00 42.83 2.17
1560 1718 0.688418 TACCATGACCGGACCCGAAT 60.688 55.000 9.46 0.00 42.83 3.34
1561 1719 0.903924 TTACCATGACCGGACCCGAA 60.904 55.000 9.46 0.00 42.83 4.30
1562 1720 1.305129 TTACCATGACCGGACCCGA 60.305 57.895 9.46 0.00 42.83 5.14
1563 1721 1.143183 CTTACCATGACCGGACCCG 59.857 63.158 9.46 0.66 39.44 5.28
1564 1722 1.153229 GCTTACCATGACCGGACCC 60.153 63.158 9.46 0.00 0.00 4.46
1565 1723 0.179081 GAGCTTACCATGACCGGACC 60.179 60.000 9.46 0.00 0.00 4.46
1566 1724 0.824759 AGAGCTTACCATGACCGGAC 59.175 55.000 9.46 1.07 0.00 4.79
1567 1725 0.824109 CAGAGCTTACCATGACCGGA 59.176 55.000 9.46 0.00 0.00 5.14
1568 1726 0.537188 ACAGAGCTTACCATGACCGG 59.463 55.000 0.00 0.00 0.00 5.28
1569 1727 2.386661 AACAGAGCTTACCATGACCG 57.613 50.000 0.00 0.00 0.00 4.79
1570 1728 4.434520 GAGTAACAGAGCTTACCATGACC 58.565 47.826 0.00 0.00 0.00 4.02
1571 1729 4.434520 GGAGTAACAGAGCTTACCATGAC 58.565 47.826 0.00 0.00 0.00 3.06
1572 1730 3.130516 CGGAGTAACAGAGCTTACCATGA 59.869 47.826 0.00 0.00 0.00 3.07
1573 1731 3.119101 ACGGAGTAACAGAGCTTACCATG 60.119 47.826 0.00 0.00 41.94 3.66
1574 1732 3.097614 ACGGAGTAACAGAGCTTACCAT 58.902 45.455 0.00 0.00 41.94 3.55
1575 1733 2.230508 CACGGAGTAACAGAGCTTACCA 59.769 50.000 0.00 0.00 41.61 3.25
1576 1734 2.490903 TCACGGAGTAACAGAGCTTACC 59.509 50.000 0.00 0.00 41.61 2.85
1577 1735 3.844577 TCACGGAGTAACAGAGCTTAC 57.155 47.619 0.00 0.00 41.61 2.34
1578 1736 5.401531 AATTCACGGAGTAACAGAGCTTA 57.598 39.130 0.00 0.00 41.61 3.09
1579 1737 3.963428 ATTCACGGAGTAACAGAGCTT 57.037 42.857 0.00 0.00 41.61 3.74
1580 1738 3.963428 AATTCACGGAGTAACAGAGCT 57.037 42.857 0.00 0.00 41.61 4.09
1581 1739 3.371285 GGAAATTCACGGAGTAACAGAGC 59.629 47.826 0.00 0.00 41.61 4.09
1582 1740 4.566004 TGGAAATTCACGGAGTAACAGAG 58.434 43.478 0.00 0.00 41.61 3.35
1583 1741 4.562757 CCTGGAAATTCACGGAGTAACAGA 60.563 45.833 0.00 0.00 41.61 3.41
1584 1742 3.684788 CCTGGAAATTCACGGAGTAACAG 59.315 47.826 0.00 0.00 41.61 3.16
1585 1743 3.071892 ACCTGGAAATTCACGGAGTAACA 59.928 43.478 0.00 0.00 41.61 2.41
1586 1744 3.671716 ACCTGGAAATTCACGGAGTAAC 58.328 45.455 0.00 0.00 41.61 2.50
1587 1745 5.424252 AGATACCTGGAAATTCACGGAGTAA 59.576 40.000 0.00 0.00 41.61 2.24
1588 1746 4.960469 AGATACCTGGAAATTCACGGAGTA 59.040 41.667 0.00 2.30 41.61 2.59
1590 1748 4.141937 TGAGATACCTGGAAATTCACGGAG 60.142 45.833 0.00 0.00 0.00 4.63
1591 1749 3.772572 TGAGATACCTGGAAATTCACGGA 59.227 43.478 0.00 0.00 0.00 4.69
1592 1750 4.137116 TGAGATACCTGGAAATTCACGG 57.863 45.455 0.00 0.00 0.00 4.94
1593 1751 4.572389 CCTTGAGATACCTGGAAATTCACG 59.428 45.833 0.00 0.00 0.00 4.35
1594 1752 5.501156 ACCTTGAGATACCTGGAAATTCAC 58.499 41.667 0.00 0.00 0.00 3.18
1595 1753 5.779241 ACCTTGAGATACCTGGAAATTCA 57.221 39.130 0.00 0.00 0.00 2.57
1596 1754 5.358160 CCAACCTTGAGATACCTGGAAATTC 59.642 44.000 0.00 0.00 0.00 2.17
1597 1755 5.264395 CCAACCTTGAGATACCTGGAAATT 58.736 41.667 0.00 0.00 0.00 1.82
1598 1756 4.325344 CCCAACCTTGAGATACCTGGAAAT 60.325 45.833 0.00 0.00 0.00 2.17
1599 1757 3.010138 CCCAACCTTGAGATACCTGGAAA 59.990 47.826 0.00 0.00 0.00 3.13
1600 1758 2.576191 CCCAACCTTGAGATACCTGGAA 59.424 50.000 0.00 0.00 0.00 3.53
1601 1759 2.196595 CCCAACCTTGAGATACCTGGA 58.803 52.381 0.00 0.00 0.00 3.86
1602 1760 1.408822 GCCCAACCTTGAGATACCTGG 60.409 57.143 0.00 0.00 0.00 4.45
1603 1761 1.281867 TGCCCAACCTTGAGATACCTG 59.718 52.381 0.00 0.00 0.00 4.00
1604 1762 1.561542 CTGCCCAACCTTGAGATACCT 59.438 52.381 0.00 0.00 0.00 3.08
1605 1763 2.019156 GCTGCCCAACCTTGAGATACC 61.019 57.143 0.00 0.00 0.00 2.73
1606 1764 1.065126 AGCTGCCCAACCTTGAGATAC 60.065 52.381 0.00 0.00 0.00 2.24
1607 1765 1.065199 CAGCTGCCCAACCTTGAGATA 60.065 52.381 0.00 0.00 0.00 1.98
1608 1766 0.323178 CAGCTGCCCAACCTTGAGAT 60.323 55.000 0.00 0.00 0.00 2.75
1609 1767 1.073722 CAGCTGCCCAACCTTGAGA 59.926 57.895 0.00 0.00 0.00 3.27
1610 1768 2.633509 GCAGCTGCCCAACCTTGAG 61.634 63.158 28.76 0.00 34.31 3.02
1611 1769 2.598394 GCAGCTGCCCAACCTTGA 60.598 61.111 28.76 0.00 34.31 3.02
1621 1779 3.818787 CACCAATCGGGCAGCTGC 61.819 66.667 30.88 30.88 42.05 5.25
1622 1780 3.136123 CCACCAATCGGGCAGCTG 61.136 66.667 10.11 10.11 42.05 4.24
1623 1781 4.431131 CCCACCAATCGGGCAGCT 62.431 66.667 0.00 0.00 42.05 4.24
1624 1782 4.424711 TCCCACCAATCGGGCAGC 62.425 66.667 0.00 0.00 44.11 5.25
1625 1783 1.987807 ATCTCCCACCAATCGGGCAG 61.988 60.000 0.00 0.00 44.11 4.85
1626 1784 2.000701 ATCTCCCACCAATCGGGCA 61.001 57.895 0.00 0.00 44.11 5.36
1627 1785 1.526917 CATCTCCCACCAATCGGGC 60.527 63.158 0.00 0.00 44.11 6.13
1628 1786 1.526917 GCATCTCCCACCAATCGGG 60.527 63.158 0.00 0.00 46.03 5.14
1629 1787 1.097547 GTGCATCTCCCACCAATCGG 61.098 60.000 0.00 0.00 38.77 4.18
1630 1788 1.431488 CGTGCATCTCCCACCAATCG 61.431 60.000 0.00 0.00 0.00 3.34
1631 1789 1.718757 GCGTGCATCTCCCACCAATC 61.719 60.000 0.00 0.00 0.00 2.67
1632 1790 1.750399 GCGTGCATCTCCCACCAAT 60.750 57.895 0.00 0.00 0.00 3.16
1633 1791 2.359850 GCGTGCATCTCCCACCAA 60.360 61.111 0.00 0.00 0.00 3.67
1634 1792 2.970379 ATGCGTGCATCTCCCACCA 61.970 57.895 0.51 0.00 29.42 4.17
1635 1793 2.124570 ATGCGTGCATCTCCCACC 60.125 61.111 0.51 0.00 29.42 4.61
1636 1794 1.026182 TTCATGCGTGCATCTCCCAC 61.026 55.000 3.96 0.00 33.90 4.61
1637 1795 0.107066 ATTCATGCGTGCATCTCCCA 60.107 50.000 3.96 0.00 33.90 4.37
1638 1796 1.027357 AATTCATGCGTGCATCTCCC 58.973 50.000 3.96 0.00 33.90 4.30
1639 1797 1.862815 GCAATTCATGCGTGCATCTCC 60.863 52.381 3.96 0.00 46.87 3.71
1640 1798 1.474017 GCAATTCATGCGTGCATCTC 58.526 50.000 3.96 0.00 46.87 2.75
1641 1799 3.635433 GCAATTCATGCGTGCATCT 57.365 47.368 3.96 0.00 46.87 2.90
1650 1808 4.862350 TGAAACACAGACTGCAATTCATG 58.138 39.130 1.25 0.00 0.00 3.07
1651 1809 5.068198 ACTTGAAACACAGACTGCAATTCAT 59.932 36.000 14.47 3.13 0.00 2.57
1652 1810 4.398988 ACTTGAAACACAGACTGCAATTCA 59.601 37.500 1.25 7.72 0.00 2.57
1653 1811 4.925068 ACTTGAAACACAGACTGCAATTC 58.075 39.130 1.25 5.20 0.00 2.17
1654 1812 4.989279 ACTTGAAACACAGACTGCAATT 57.011 36.364 1.25 0.00 0.00 2.32
1655 1813 6.710295 TGTATACTTGAAACACAGACTGCAAT 59.290 34.615 1.25 0.00 0.00 3.56
1656 1814 6.052360 TGTATACTTGAAACACAGACTGCAA 58.948 36.000 1.25 0.00 0.00 4.08
1657 1815 5.606505 TGTATACTTGAAACACAGACTGCA 58.393 37.500 1.25 0.00 0.00 4.41
1658 1816 6.202954 AGTTGTATACTTGAAACACAGACTGC 59.797 38.462 1.25 0.00 31.29 4.40
1659 1817 7.438160 TCAGTTGTATACTTGAAACACAGACTG 59.562 37.037 4.17 0.00 33.85 3.51
1660 1818 7.497595 TCAGTTGTATACTTGAAACACAGACT 58.502 34.615 4.17 0.00 33.85 3.24
1661 1819 7.709269 TCAGTTGTATACTTGAAACACAGAC 57.291 36.000 4.17 0.00 33.85 3.51
1662 1820 8.201464 TCTTCAGTTGTATACTTGAAACACAGA 58.799 33.333 4.17 3.13 33.85 3.41
1663 1821 8.276325 GTCTTCAGTTGTATACTTGAAACACAG 58.724 37.037 4.17 1.11 33.85 3.66
1664 1822 7.766738 TGTCTTCAGTTGTATACTTGAAACACA 59.233 33.333 4.17 12.35 33.85 3.72
1665 1823 8.062448 GTGTCTTCAGTTGTATACTTGAAACAC 58.938 37.037 23.43 23.43 33.85 3.32
1666 1824 7.042992 CGTGTCTTCAGTTGTATACTTGAAACA 60.043 37.037 4.17 13.21 33.85 2.83
1667 1825 7.042925 ACGTGTCTTCAGTTGTATACTTGAAAC 60.043 37.037 4.17 11.46 33.85 2.78
1668 1826 6.982141 ACGTGTCTTCAGTTGTATACTTGAAA 59.018 34.615 4.17 1.93 33.85 2.69
1669 1827 6.419710 CACGTGTCTTCAGTTGTATACTTGAA 59.580 38.462 7.58 10.22 33.85 2.69
1670 1828 5.918576 CACGTGTCTTCAGTTGTATACTTGA 59.081 40.000 7.58 3.18 33.85 3.02
1671 1829 5.118664 CCACGTGTCTTCAGTTGTATACTTG 59.881 44.000 15.65 0.83 33.85 3.16
1672 1830 5.010314 TCCACGTGTCTTCAGTTGTATACTT 59.990 40.000 15.65 0.00 33.85 2.24
1673 1831 4.521639 TCCACGTGTCTTCAGTTGTATACT 59.478 41.667 15.65 0.00 37.68 2.12
1674 1832 4.801891 TCCACGTGTCTTCAGTTGTATAC 58.198 43.478 15.65 0.00 0.00 1.47
1675 1833 5.047590 ACATCCACGTGTCTTCAGTTGTATA 60.048 40.000 15.65 0.00 0.00 1.47
1676 1834 4.245660 CATCCACGTGTCTTCAGTTGTAT 58.754 43.478 15.65 0.00 0.00 2.29
1677 1835 3.069016 ACATCCACGTGTCTTCAGTTGTA 59.931 43.478 15.65 0.00 0.00 2.41
1678 1836 2.158957 ACATCCACGTGTCTTCAGTTGT 60.159 45.455 15.65 6.48 0.00 3.32
1679 1837 2.483876 ACATCCACGTGTCTTCAGTTG 58.516 47.619 15.65 5.86 0.00 3.16
1680 1838 2.910688 ACATCCACGTGTCTTCAGTT 57.089 45.000 15.65 0.00 0.00 3.16
1681 1839 2.910688 AACATCCACGTGTCTTCAGT 57.089 45.000 15.65 1.29 0.00 3.41
1682 1840 2.480419 GGAAACATCCACGTGTCTTCAG 59.520 50.000 15.65 0.00 0.00 3.02
1683 1841 2.158885 TGGAAACATCCACGTGTCTTCA 60.159 45.455 15.65 0.00 34.33 3.02
1684 1842 2.489971 TGGAAACATCCACGTGTCTTC 58.510 47.619 15.65 8.91 34.33 2.87
1685 1843 2.631160 TGGAAACATCCACGTGTCTT 57.369 45.000 15.65 0.00 34.33 3.01
1686 1844 2.494059 CTTGGAAACATCCACGTGTCT 58.506 47.619 15.65 0.00 42.32 3.41
1687 1845 1.069227 GCTTGGAAACATCCACGTGTC 60.069 52.381 15.65 3.82 42.32 3.67
1688 1846 0.951558 GCTTGGAAACATCCACGTGT 59.048 50.000 15.65 0.00 42.32 4.49
1689 1847 0.240945 GGCTTGGAAACATCCACGTG 59.759 55.000 9.08 9.08 42.32 4.49
1690 1848 0.179004 TGGCTTGGAAACATCCACGT 60.179 50.000 0.00 0.00 42.32 4.49
1691 1849 1.135315 CATGGCTTGGAAACATCCACG 60.135 52.381 0.00 0.00 43.30 4.94
1692 1850 1.895131 ACATGGCTTGGAAACATCCAC 59.105 47.619 5.31 0.00 43.30 4.02
1693 1851 1.894466 CACATGGCTTGGAAACATCCA 59.106 47.619 5.31 0.00 44.18 3.41
1694 1852 1.205417 CCACATGGCTTGGAAACATCC 59.795 52.381 5.31 0.00 42.32 3.51
1695 1853 2.170166 TCCACATGGCTTGGAAACATC 58.830 47.619 1.14 0.00 40.35 3.06
1696 1854 2.307496 TCCACATGGCTTGGAAACAT 57.693 45.000 1.14 0.00 40.35 2.71
1697 1855 3.837893 TCCACATGGCTTGGAAACA 57.162 47.368 1.14 0.00 40.35 2.83
1701 1859 3.668141 ATGTATTCCACATGGCTTGGA 57.332 42.857 5.31 0.00 46.41 3.53
1710 1868 3.433031 CCTTTAGCCGGATGTATTCCACA 60.433 47.826 5.05 0.00 45.78 4.17
1711 1869 3.139077 CCTTTAGCCGGATGTATTCCAC 58.861 50.000 5.05 0.00 45.78 4.02
1712 1870 3.042682 TCCTTTAGCCGGATGTATTCCA 58.957 45.455 5.05 0.00 45.78 3.53
1713 1871 3.764237 TCCTTTAGCCGGATGTATTCC 57.236 47.619 5.05 0.00 41.59 3.01
1714 1872 4.254492 GGATCCTTTAGCCGGATGTATTC 58.746 47.826 5.05 0.00 41.24 1.75
1715 1873 3.650942 TGGATCCTTTAGCCGGATGTATT 59.349 43.478 14.23 0.00 41.24 1.89
1716 1874 3.248024 TGGATCCTTTAGCCGGATGTAT 58.752 45.455 14.23 0.00 41.24 2.29
1717 1875 2.684943 TGGATCCTTTAGCCGGATGTA 58.315 47.619 14.23 0.00 41.24 2.29
1718 1876 1.507140 TGGATCCTTTAGCCGGATGT 58.493 50.000 14.23 0.00 41.24 3.06
1719 1877 2.867109 ATGGATCCTTTAGCCGGATG 57.133 50.000 14.23 0.00 41.24 3.51
1720 1878 4.993705 TTAATGGATCCTTTAGCCGGAT 57.006 40.909 14.23 0.00 43.77 4.18
1721 1879 4.993705 ATTAATGGATCCTTTAGCCGGA 57.006 40.909 14.23 2.47 35.94 5.14
1722 1880 7.703058 AATTATTAATGGATCCTTTAGCCGG 57.297 36.000 14.23 0.00 35.94 6.13
1723 1881 9.667107 TCTAATTATTAATGGATCCTTTAGCCG 57.333 33.333 14.23 3.73 35.94 5.52
1743 1901 9.327731 ACTCCCTCTAATTCCGAATATCTAATT 57.672 33.333 0.00 0.00 0.00 1.40
1744 1902 8.903059 ACTCCCTCTAATTCCGAATATCTAAT 57.097 34.615 0.00 0.00 0.00 1.73
1745 1903 7.396623 GGACTCCCTCTAATTCCGAATATCTAA 59.603 40.741 0.00 0.00 0.00 2.10
1746 1904 6.890814 GGACTCCCTCTAATTCCGAATATCTA 59.109 42.308 0.00 0.00 0.00 1.98
1747 1905 5.717654 GGACTCCCTCTAATTCCGAATATCT 59.282 44.000 0.00 0.00 0.00 1.98
1748 1906 5.717654 AGGACTCCCTCTAATTCCGAATATC 59.282 44.000 0.00 0.00 38.86 1.63
1749 1907 5.482175 CAGGACTCCCTCTAATTCCGAATAT 59.518 44.000 0.00 0.00 42.02 1.28
1750 1908 4.833380 CAGGACTCCCTCTAATTCCGAATA 59.167 45.833 0.00 0.00 42.02 1.75
1751 1909 3.643792 CAGGACTCCCTCTAATTCCGAAT 59.356 47.826 0.00 0.00 42.02 3.34
1752 1910 3.031736 CAGGACTCCCTCTAATTCCGAA 58.968 50.000 0.00 0.00 42.02 4.30
1753 1911 2.667470 CAGGACTCCCTCTAATTCCGA 58.333 52.381 0.00 0.00 42.02 4.55
1754 1912 1.069358 GCAGGACTCCCTCTAATTCCG 59.931 57.143 0.00 0.00 42.02 4.30
1755 1913 1.069358 CGCAGGACTCCCTCTAATTCC 59.931 57.143 0.00 0.00 42.02 3.01
1756 1914 1.539280 GCGCAGGACTCCCTCTAATTC 60.539 57.143 0.30 0.00 42.02 2.17
1757 1915 0.466124 GCGCAGGACTCCCTCTAATT 59.534 55.000 0.30 0.00 42.02 1.40
1758 1916 1.739338 CGCGCAGGACTCCCTCTAAT 61.739 60.000 8.75 0.00 42.02 1.73
1759 1917 2.415608 CGCGCAGGACTCCCTCTAA 61.416 63.158 8.75 0.00 42.02 2.10
1760 1918 2.829003 CGCGCAGGACTCCCTCTA 60.829 66.667 8.75 0.00 42.02 2.43
1766 1924 4.863925 GAGAGGCGCGCAGGACTC 62.864 72.222 34.42 27.57 0.00 3.36
1778 1936 3.073735 AGGCGCTCAGTGGAGAGG 61.074 66.667 7.64 0.00 44.26 3.69
1779 1937 2.493973 GAGGCGCTCAGTGGAGAG 59.506 66.667 7.64 0.00 44.26 3.20
1780 1938 3.071206 GGAGGCGCTCAGTGGAGA 61.071 66.667 7.64 0.00 44.26 3.71
1781 1939 4.154347 GGGAGGCGCTCAGTGGAG 62.154 72.222 7.64 0.00 44.33 3.86
1828 1986 4.966787 TTTGGTGTCCGCTGGGGC 62.967 66.667 5.77 2.21 38.88 5.80
1829 1987 2.983592 GTTTGGTGTCCGCTGGGG 60.984 66.667 4.03 4.03 37.02 4.96
1830 1988 2.983592 GGTTTGGTGTCCGCTGGG 60.984 66.667 0.00 0.00 0.00 4.45
1831 1989 1.966451 GAGGTTTGGTGTCCGCTGG 60.966 63.158 0.00 0.00 0.00 4.85
1832 1990 2.317609 CGAGGTTTGGTGTCCGCTG 61.318 63.158 0.00 0.00 0.00 5.18
1833 1991 2.030562 CGAGGTTTGGTGTCCGCT 59.969 61.111 0.00 0.00 0.00 5.52
1834 1992 2.280592 ACGAGGTTTGGTGTCCGC 60.281 61.111 0.00 0.00 0.00 5.54
1835 1993 2.019951 CGACGAGGTTTGGTGTCCG 61.020 63.158 0.00 0.00 0.00 4.79
1836 1994 1.666872 CCGACGAGGTTTGGTGTCC 60.667 63.158 0.00 0.00 34.51 4.02
1837 1995 2.315386 GCCGACGAGGTTTGGTGTC 61.315 63.158 0.00 0.00 43.70 3.67
1838 1996 2.280592 GCCGACGAGGTTTGGTGT 60.281 61.111 0.00 0.00 43.70 4.16
1839 1997 1.566018 GAAGCCGACGAGGTTTGGTG 61.566 60.000 8.23 0.00 43.87 4.17
1840 1998 1.301479 GAAGCCGACGAGGTTTGGT 60.301 57.895 8.23 0.00 43.87 3.67
1841 1999 2.033194 GGAAGCCGACGAGGTTTGG 61.033 63.158 8.23 0.00 43.87 3.28
1842 2000 3.562635 GGAAGCCGACGAGGTTTG 58.437 61.111 8.23 0.00 43.87 2.93
1891 2049 0.597637 GAGACCATGGACGCCATACG 60.598 60.000 21.47 7.14 43.15 3.06
1892 2050 0.464036 TGAGACCATGGACGCCATAC 59.536 55.000 21.47 3.55 43.15 2.39
1893 2051 0.464036 GTGAGACCATGGACGCCATA 59.536 55.000 21.47 0.00 43.15 2.74
1894 2052 1.221840 GTGAGACCATGGACGCCAT 59.778 57.895 21.47 5.65 46.37 4.40
1895 2053 1.888436 GAGTGAGACCATGGACGCCA 61.888 60.000 21.47 13.12 38.19 5.69
1896 2054 1.153549 GAGTGAGACCATGGACGCC 60.154 63.158 21.47 10.54 0.00 5.68
1897 2055 0.179124 GAGAGTGAGACCATGGACGC 60.179 60.000 21.47 15.45 0.00 5.19
1898 2056 1.133982 CAGAGAGTGAGACCATGGACG 59.866 57.143 21.47 0.00 0.00 4.79
1899 2057 1.134848 GCAGAGAGTGAGACCATGGAC 60.135 57.143 21.47 13.40 0.00 4.02
1900 2058 1.189752 GCAGAGAGTGAGACCATGGA 58.810 55.000 21.47 0.00 0.00 3.41
1901 2059 0.177604 GGCAGAGAGTGAGACCATGG 59.822 60.000 11.19 11.19 0.00 3.66
1902 2060 0.179116 CGGCAGAGAGTGAGACCATG 60.179 60.000 0.00 0.00 0.00 3.66
1903 2061 1.326213 CCGGCAGAGAGTGAGACCAT 61.326 60.000 0.00 0.00 0.00 3.55
1904 2062 1.979155 CCGGCAGAGAGTGAGACCA 60.979 63.158 0.00 0.00 0.00 4.02
1905 2063 2.888863 CCGGCAGAGAGTGAGACC 59.111 66.667 0.00 0.00 0.00 3.85
1906 2064 2.183046 GCCGGCAGAGAGTGAGAC 59.817 66.667 24.80 0.00 0.00 3.36
1907 2065 2.036414 AGCCGGCAGAGAGTGAGA 59.964 61.111 31.54 0.00 0.00 3.27
1908 2066 1.603236 AAGAGCCGGCAGAGAGTGAG 61.603 60.000 31.54 0.00 0.00 3.51
1909 2067 1.599606 GAAGAGCCGGCAGAGAGTGA 61.600 60.000 31.54 0.00 0.00 3.41
1910 2068 1.153667 GAAGAGCCGGCAGAGAGTG 60.154 63.158 31.54 0.00 0.00 3.51
1911 2069 2.355193 GGAAGAGCCGGCAGAGAGT 61.355 63.158 31.54 6.18 0.00 3.24
1912 2070 2.015227 GAGGAAGAGCCGGCAGAGAG 62.015 65.000 31.54 0.00 43.43 3.20
1913 2071 2.038007 AGGAAGAGCCGGCAGAGA 59.962 61.111 31.54 0.00 43.43 3.10
1914 2072 2.498726 GAGGAAGAGCCGGCAGAG 59.501 66.667 31.54 0.00 43.43 3.35
1915 2073 3.077556 GGAGGAAGAGCCGGCAGA 61.078 66.667 31.54 0.00 43.43 4.26
1916 2074 3.080121 AGGAGGAAGAGCCGGCAG 61.080 66.667 31.54 0.00 43.43 4.85
1917 2075 3.077556 GAGGAGGAAGAGCCGGCA 61.078 66.667 31.54 0.00 43.43 5.69
1918 2076 3.855853 GGAGGAGGAAGAGCCGGC 61.856 72.222 21.89 21.89 43.43 6.13
1919 2077 3.157949 GGGAGGAGGAAGAGCCGG 61.158 72.222 0.00 0.00 43.43 6.13
1920 2078 3.157949 GGGGAGGAGGAAGAGCCG 61.158 72.222 0.00 0.00 43.43 5.52
1921 2079 3.157949 CGGGGAGGAGGAAGAGCC 61.158 72.222 0.00 0.00 0.00 4.70
1922 2080 2.042843 TCGGGGAGGAGGAAGAGC 60.043 66.667 0.00 0.00 0.00 4.09
1923 2081 2.131067 GCTCGGGGAGGAGGAAGAG 61.131 68.421 0.00 0.00 34.56 2.85
1924 2082 2.042843 GCTCGGGGAGGAGGAAGA 60.043 66.667 0.00 0.00 34.56 2.87
1925 2083 3.157949 GGCTCGGGGAGGAGGAAG 61.158 72.222 0.00 0.00 34.56 3.46
1926 2084 4.798682 GGGCTCGGGGAGGAGGAA 62.799 72.222 0.00 0.00 34.56 3.36
1962 2120 4.671569 CGGATCTGCGGCCTAGGC 62.672 72.222 26.55 26.55 41.06 3.93
1963 2121 4.671569 GCGGATCTGCGGCCTAGG 62.672 72.222 11.53 3.67 36.90 3.02
1964 2122 3.565910 GAGCGGATCTGCGGCCTAG 62.566 68.421 20.62 0.00 43.25 3.02
1965 2123 3.606662 GAGCGGATCTGCGGCCTA 61.607 66.667 20.62 0.00 43.25 3.93
1969 2127 4.292178 GAGGGAGCGGATCTGCGG 62.292 72.222 20.62 0.00 40.67 5.69
1970 2128 4.637489 CGAGGGAGCGGATCTGCG 62.637 72.222 20.62 3.83 40.67 5.18
1971 2129 4.959596 GCGAGGGAGCGGATCTGC 62.960 72.222 19.30 19.30 0.00 4.26
1972 2130 4.292178 GGCGAGGGAGCGGATCTG 62.292 72.222 0.00 0.00 38.18 2.90
2016 2174 3.744749 TATCGGACCGAAGCGCGTG 62.745 63.158 22.55 0.00 39.99 5.34
2017 2175 2.842256 ATATCGGACCGAAGCGCGT 61.842 57.895 22.55 5.59 39.99 6.01
2018 2176 2.050351 ATATCGGACCGAAGCGCG 60.050 61.111 22.55 0.00 39.99 6.86
2019 2177 2.658707 GCATATCGGACCGAAGCGC 61.659 63.158 22.55 18.62 39.99 5.92
2020 2178 2.022129 GGCATATCGGACCGAAGCG 61.022 63.158 22.55 12.72 39.99 4.68
2021 2179 0.946221 CTGGCATATCGGACCGAAGC 60.946 60.000 22.55 23.01 39.99 3.86
2022 2180 0.319900 CCTGGCATATCGGACCGAAG 60.320 60.000 22.55 14.74 39.99 3.79
2023 2181 1.745890 CCTGGCATATCGGACCGAA 59.254 57.895 22.55 10.83 39.99 4.30
2024 2182 2.867855 GCCTGGCATATCGGACCGA 61.868 63.158 20.85 20.85 41.13 4.69
2025 2183 2.357517 GCCTGGCATATCGGACCG 60.358 66.667 15.17 7.84 0.00 4.79
2026 2184 2.032681 GGCCTGGCATATCGGACC 59.967 66.667 22.05 0.00 0.00 4.46
2027 2185 2.032681 GGGCCTGGCATATCGGAC 59.967 66.667 22.05 0.00 0.00 4.79
2028 2186 3.249189 GGGGCCTGGCATATCGGA 61.249 66.667 22.05 0.00 0.00 4.55
2029 2187 4.704833 CGGGGCCTGGCATATCGG 62.705 72.222 22.05 7.29 0.00 4.18
2030 2188 4.704833 CCGGGGCCTGGCATATCG 62.705 72.222 20.79 16.47 0.00 2.92
2031 2189 4.351054 CCCGGGGCCTGGCATATC 62.351 72.222 27.05 2.16 0.00 1.63
2066 2224 4.162690 GCCTAGTCGCCACAGGGG 62.163 72.222 0.00 0.00 40.85 4.79
2067 2225 3.077556 AGCCTAGTCGCCACAGGG 61.078 66.667 3.09 0.00 37.18 4.45
2068 2226 2.185350 CAGCCTAGTCGCCACAGG 59.815 66.667 0.00 0.00 0.00 4.00
2069 2227 2.185350 CCAGCCTAGTCGCCACAG 59.815 66.667 0.00 0.00 0.00 3.66
2070 2228 3.390521 CCCAGCCTAGTCGCCACA 61.391 66.667 0.00 0.00 0.00 4.17
2071 2229 4.162690 CCCCAGCCTAGTCGCCAC 62.163 72.222 0.00 0.00 0.00 5.01
2072 2230 4.715130 ACCCCAGCCTAGTCGCCA 62.715 66.667 0.00 0.00 0.00 5.69
2073 2231 4.162690 CACCCCAGCCTAGTCGCC 62.163 72.222 0.00 0.00 0.00 5.54
2074 2232 4.162690 CCACCCCAGCCTAGTCGC 62.163 72.222 0.00 0.00 0.00 5.19
2075 2233 4.162690 GCCACCCCAGCCTAGTCG 62.163 72.222 0.00 0.00 0.00 4.18
2076 2234 3.009115 TGCCACCCCAGCCTAGTC 61.009 66.667 0.00 0.00 0.00 2.59
2077 2235 3.011517 CTGCCACCCCAGCCTAGT 61.012 66.667 0.00 0.00 0.00 2.57
2078 2236 2.688666 TCTGCCACCCCAGCCTAG 60.689 66.667 0.00 0.00 32.87 3.02
2079 2237 3.009115 GTCTGCCACCCCAGCCTA 61.009 66.667 0.00 0.00 32.87 3.93
2082 2240 4.284550 TTGGTCTGCCACCCCAGC 62.285 66.667 0.00 0.00 46.18 4.85
2083 2241 2.034687 CTTGGTCTGCCACCCCAG 59.965 66.667 0.00 0.00 46.18 4.45
2084 2242 2.449518 TCTTGGTCTGCCACCCCA 60.450 61.111 0.00 0.00 46.18 4.96
2085 2243 2.034221 GTCTTGGTCTGCCACCCC 59.966 66.667 0.00 0.00 46.18 4.95
2086 2244 2.034221 GGTCTTGGTCTGCCACCC 59.966 66.667 0.00 0.00 46.18 4.61
2087 2245 2.358737 CGGTCTTGGTCTGCCACC 60.359 66.667 0.00 0.00 46.01 4.61
2088 2246 2.358737 CCGGTCTTGGTCTGCCAC 60.359 66.667 0.00 0.00 46.01 5.01
2089 2247 4.329545 GCCGGTCTTGGTCTGCCA 62.330 66.667 1.90 0.00 44.38 4.92
2090 2248 4.329545 TGCCGGTCTTGGTCTGCC 62.330 66.667 1.90 0.00 0.00 4.85
2091 2249 2.743928 CTGCCGGTCTTGGTCTGC 60.744 66.667 1.90 0.00 0.00 4.26
2092 2250 2.046892 CCTGCCGGTCTTGGTCTG 60.047 66.667 1.90 0.00 0.00 3.51
2093 2251 4.021925 GCCTGCCGGTCTTGGTCT 62.022 66.667 1.90 0.00 0.00 3.85
2111 2269 4.083862 GTGTGGGACTCCGAGGCC 62.084 72.222 12.49 12.49 45.05 5.19
2112 2270 3.311110 TGTGTGGGACTCCGAGGC 61.311 66.667 0.00 0.00 35.24 4.70
2113 2271 2.657237 GTGTGTGGGACTCCGAGG 59.343 66.667 0.00 0.00 35.24 4.63
2114 2272 2.657237 GGTGTGTGGGACTCCGAG 59.343 66.667 0.00 0.00 35.24 4.63
2117 2275 4.699522 GCCGGTGTGTGGGACTCC 62.700 72.222 1.90 0.00 35.22 3.85
2118 2276 4.699522 GGCCGGTGTGTGGGACTC 62.700 72.222 1.90 0.00 0.00 3.36
2120 2278 4.699522 GAGGCCGGTGTGTGGGAC 62.700 72.222 1.90 0.00 0.00 4.46
2168 2326 4.043200 GCGTGGGCAAGGTGAAGC 62.043 66.667 0.00 0.00 39.62 3.86
2169 2327 2.281761 AGCGTGGGCAAGGTGAAG 60.282 61.111 0.00 0.00 43.41 3.02
2170 2328 2.594303 CAGCGTGGGCAAGGTGAA 60.594 61.111 0.00 0.00 43.41 3.18
2171 2329 3.535629 CTCAGCGTGGGCAAGGTGA 62.536 63.158 0.00 0.00 43.00 4.02
2172 2330 3.052082 CTCAGCGTGGGCAAGGTG 61.052 66.667 0.00 0.00 43.41 4.00
2173 2331 4.335647 CCTCAGCGTGGGCAAGGT 62.336 66.667 0.00 0.00 43.41 3.50
2183 2341 3.746949 GATCTGGGTGGCCTCAGCG 62.747 68.421 3.32 0.00 41.92 5.18
2184 2342 2.191641 GATCTGGGTGGCCTCAGC 59.808 66.667 3.32 0.00 40.41 4.26
2185 2343 1.565390 TTGGATCTGGGTGGCCTCAG 61.565 60.000 3.32 9.60 0.00 3.35
2186 2344 1.541118 TTGGATCTGGGTGGCCTCA 60.541 57.895 3.32 0.00 0.00 3.86
2187 2345 1.077429 GTTGGATCTGGGTGGCCTC 60.077 63.158 3.32 0.00 0.00 4.70
2188 2346 1.217057 ATGTTGGATCTGGGTGGCCT 61.217 55.000 3.32 0.00 0.00 5.19
2189 2347 0.753111 GATGTTGGATCTGGGTGGCC 60.753 60.000 0.00 0.00 0.00 5.36
2190 2348 0.753111 GGATGTTGGATCTGGGTGGC 60.753 60.000 0.00 0.00 0.00 5.01
2191 2349 0.106519 GGGATGTTGGATCTGGGTGG 60.107 60.000 0.00 0.00 0.00 4.61
2192 2350 0.464373 CGGGATGTTGGATCTGGGTG 60.464 60.000 0.00 0.00 0.00 4.61
2193 2351 1.915228 CGGGATGTTGGATCTGGGT 59.085 57.895 0.00 0.00 0.00 4.51
2194 2352 1.526917 GCGGGATGTTGGATCTGGG 60.527 63.158 0.00 0.00 0.00 4.45
2195 2353 1.526917 GGCGGGATGTTGGATCTGG 60.527 63.158 0.00 0.00 0.00 3.86
2196 2354 1.889105 CGGCGGGATGTTGGATCTG 60.889 63.158 0.00 0.00 0.00 2.90
2197 2355 2.505982 CGGCGGGATGTTGGATCT 59.494 61.111 0.00 0.00 0.00 2.75
2198 2356 2.591715 CCGGCGGGATGTTGGATC 60.592 66.667 20.56 0.00 34.06 3.36
2199 2357 3.087253 TCCGGCGGGATGTTGGAT 61.087 61.111 27.98 0.00 37.43 3.41
2200 2358 3.781307 CTCCGGCGGGATGTTGGA 61.781 66.667 27.98 2.24 42.83 3.53
2202 2360 4.473520 AGCTCCGGCGGGATGTTG 62.474 66.667 27.98 10.45 42.83 3.33
2203 2361 4.473520 CAGCTCCGGCGGGATGTT 62.474 66.667 27.98 11.86 42.83 2.71
2221 2379 1.669115 AGTTGTAGCAGCAGCCGTG 60.669 57.895 0.00 0.00 43.56 4.94
2222 2380 1.669115 CAGTTGTAGCAGCAGCCGT 60.669 57.895 0.00 0.00 43.56 5.68
2223 2381 1.669115 ACAGTTGTAGCAGCAGCCG 60.669 57.895 0.00 0.00 43.56 5.52
2224 2382 1.871772 CACAGTTGTAGCAGCAGCC 59.128 57.895 0.00 0.00 43.56 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.