Multiple sequence alignment - TraesCS2B01G565300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G565300 chr2B 100.000 2889 0 0 1 2889 756705597 756708485 0.000000e+00 5336.0
1 TraesCS2B01G565300 chr2B 88.295 1965 188 27 1 1930 756636543 756638500 0.000000e+00 2316.0
2 TraesCS2B01G565300 chr2B 87.382 1482 150 21 490 1941 756969064 756970538 0.000000e+00 1666.0
3 TraesCS2B01G565300 chr2B 82.540 819 120 15 543 1357 707959872 707959073 0.000000e+00 699.0
4 TraesCS2B01G565300 chr2B 88.333 420 39 3 1 410 756968523 756968942 2.000000e-136 496.0
5 TraesCS2B01G565300 chr2B 83.059 425 45 15 2348 2761 756640636 756641044 7.610000e-96 361.0
6 TraesCS2B01G565300 chr2B 79.701 335 63 5 1579 1909 707620406 707620073 1.340000e-58 237.0
7 TraesCS2B01G565300 chr2B 78.295 387 67 9 12 384 707960743 707960360 1.730000e-57 233.0
8 TraesCS2B01G565300 chr2B 81.495 281 46 6 1520 1797 756623130 756623407 2.900000e-55 226.0
9 TraesCS2B01G565300 chr2B 84.906 212 28 2 2007 2214 756638501 756638712 8.110000e-51 211.0
10 TraesCS2B01G565300 chr2B 83.173 208 33 2 172 378 707622052 707621846 3.800000e-44 189.0
11 TraesCS2B01G565300 chr2D 88.883 1970 182 16 1 1940 619146880 619148842 0.000000e+00 2390.0
12 TraesCS2B01G565300 chr2D 85.064 549 72 7 541 1083 586056300 586056844 4.210000e-153 551.0
13 TraesCS2B01G565300 chr2D 82.833 233 28 6 2005 2225 619148856 619149088 6.310000e-47 198.0
14 TraesCS2B01G565300 chr2D 80.709 254 34 5 139 378 586055525 586055777 1.770000e-42 183.0
15 TraesCS2B01G565300 chr2D 97.561 41 1 0 2840 2880 383553800 383553840 1.440000e-08 71.3
16 TraesCS2B01G565300 chr2D 94.595 37 2 0 2836 2872 565156831 565156867 1.120000e-04 58.4
17 TraesCS2B01G565300 chr2A 87.607 1985 201 28 1 1949 750209414 750207439 0.000000e+00 2261.0
18 TraesCS2B01G565300 chr2A 95.155 743 31 3 543 1282 749971808 749972548 0.000000e+00 1168.0
19 TraesCS2B01G565300 chr2A 95.349 559 25 1 1 558 749970474 749971032 0.000000e+00 887.0
20 TraesCS2B01G565300 chr2A 97.642 509 12 0 1278 1786 750047414 750047922 0.000000e+00 874.0
21 TraesCS2B01G565300 chr2A 81.563 819 133 12 541 1345 720224770 720223956 0.000000e+00 660.0
22 TraesCS2B01G565300 chr2A 85.274 584 62 17 1784 2358 750232496 750231928 5.370000e-162 580.0
23 TraesCS2B01G565300 chr2A 77.892 389 69 10 6 380 721065703 721065318 2.900000e-55 226.0
24 TraesCS2B01G565300 chr2A 81.395 215 40 0 1582 1796 721062264 721062050 2.960000e-40 176.0
25 TraesCS2B01G565300 chr2A 82.710 214 15 9 2372 2581 750200048 750199853 1.380000e-38 171.0
26 TraesCS2B01G565300 chr2A 97.561 41 1 0 2840 2880 518329732 518329772 1.440000e-08 71.3
27 TraesCS2B01G565300 chrUn 85.135 814 108 10 541 1346 74781483 74782291 0.000000e+00 821.0
28 TraesCS2B01G565300 chr6D 76.942 399 69 12 4 384 446621874 446621481 3.770000e-49 206.0
29 TraesCS2B01G565300 chr5B 100.000 41 0 0 2840 2880 133894170 133894130 3.090000e-10 76.8
30 TraesCS2B01G565300 chr5D 93.478 46 1 2 2836 2880 370735929 370735885 1.860000e-07 67.6
31 TraesCS2B01G565300 chr3A 91.837 49 2 2 2836 2883 698516611 698516564 1.860000e-07 67.6
32 TraesCS2B01G565300 chr3A 92.683 41 2 1 2832 2872 168540324 168540363 1.120000e-04 58.4
33 TraesCS2B01G565300 chr4B 94.595 37 2 0 2836 2872 507357776 507357740 1.120000e-04 58.4
34 TraesCS2B01G565300 chr3D 94.595 37 0 2 2836 2871 563835337 563835302 4.020000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G565300 chr2B 756705597 756708485 2888 False 5336.000000 5336 100.0000 1 2889 1 chr2B.!!$F2 2888
1 TraesCS2B01G565300 chr2B 756968523 756970538 2015 False 1081.000000 1666 87.8575 1 1941 2 chr2B.!!$F4 1940
2 TraesCS2B01G565300 chr2B 756636543 756641044 4501 False 962.666667 2316 85.4200 1 2761 3 chr2B.!!$F3 2760
3 TraesCS2B01G565300 chr2B 707959073 707960743 1670 True 466.000000 699 80.4175 12 1357 2 chr2B.!!$R2 1345
4 TraesCS2B01G565300 chr2B 707620073 707622052 1979 True 213.000000 237 81.4370 172 1909 2 chr2B.!!$R1 1737
5 TraesCS2B01G565300 chr2D 619146880 619149088 2208 False 1294.000000 2390 85.8580 1 2225 2 chr2D.!!$F4 2224
6 TraesCS2B01G565300 chr2D 586055525 586056844 1319 False 367.000000 551 82.8865 139 1083 2 chr2D.!!$F3 944
7 TraesCS2B01G565300 chr2A 750207439 750209414 1975 True 2261.000000 2261 87.6070 1 1949 1 chr2A.!!$R3 1948
8 TraesCS2B01G565300 chr2A 749970474 749972548 2074 False 1027.500000 1168 95.2520 1 1282 2 chr2A.!!$F3 1281
9 TraesCS2B01G565300 chr2A 750047414 750047922 508 False 874.000000 874 97.6420 1278 1786 1 chr2A.!!$F2 508
10 TraesCS2B01G565300 chr2A 720223956 720224770 814 True 660.000000 660 81.5630 541 1345 1 chr2A.!!$R1 804
11 TraesCS2B01G565300 chr2A 750231928 750232496 568 True 580.000000 580 85.2740 1784 2358 1 chr2A.!!$R4 574
12 TraesCS2B01G565300 chr2A 721062050 721065703 3653 True 201.000000 226 79.6435 6 1796 2 chr2A.!!$R5 1790
13 TraesCS2B01G565300 chrUn 74781483 74782291 808 False 821.000000 821 85.1350 541 1346 1 chrUn.!!$F1 805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
420 870 0.038892 TCGCGGTACAGAGGAAACAC 60.039 55.0 6.13 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2386 6703 0.698238 TGGACCATTCCTCCCAGTTG 59.302 55.0 0.0 0.0 43.31 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 6.258068 GGAAATCGGTCCAGTAAAGATTGTAG 59.742 42.308 0.00 0.00 37.65 2.74
208 222 0.686789 AACAGGCAAATGGGGAAAGC 59.313 50.000 0.00 0.00 0.00 3.51
298 312 9.787435 ATACGGAATTTCCATGTTTTAGCTATA 57.213 29.630 15.58 0.00 35.91 1.31
319 333 9.331282 GCTATAAAGACATACTTTCAGGAACAT 57.669 33.333 0.00 0.00 44.36 2.71
390 406 8.715190 AGTTTACAAGGTAACATAATGGGTTT 57.285 30.769 0.00 0.00 41.41 3.27
404 420 1.606668 TGGGTTTGTCTTGTCATTCGC 59.393 47.619 0.00 0.00 0.00 4.70
420 870 0.038892 TCGCGGTACAGAGGAAACAC 60.039 55.000 6.13 0.00 0.00 3.32
455 905 6.319658 TGAAAAGTATCTCATGGGCTCAATTC 59.680 38.462 0.00 0.00 0.00 2.17
512 974 9.893305 CACATAGGTTCGAAAAAGTTAATTTCT 57.107 29.630 0.00 0.00 35.19 2.52
665 3015 5.261209 TGCAAAACTACAGCACAAGAATT 57.739 34.783 0.00 0.00 32.55 2.17
773 3125 7.926018 CCTTTCTTTTTGGTATGTGCTAGTTTT 59.074 33.333 0.00 0.00 0.00 2.43
837 3200 5.530915 TCATGACGACTTGTTTCCTTTCATT 59.469 36.000 0.00 0.00 0.00 2.57
900 3266 8.751302 ATTGGTTGACACGGTTTAAAATAATC 57.249 30.769 0.00 0.00 0.00 1.75
1054 3424 3.299503 AGAATCTTTGGTGCAAACCAGT 58.700 40.909 0.00 0.00 41.35 4.00
1126 3602 5.763876 ACTAATGAACTCTTAGCACCCTT 57.236 39.130 0.00 0.00 30.80 3.95
1130 3606 3.476552 TGAACTCTTAGCACCCTTGTTG 58.523 45.455 0.00 0.00 0.00 3.33
1268 3747 5.130477 CACTTATAGCTTTGGGGTCCTTCTA 59.870 44.000 0.00 0.00 0.00 2.10
1415 3895 0.538516 TCGGCAAAGGCAAGGCTTTA 60.539 50.000 19.32 3.61 43.71 1.85
1489 3987 2.414481 CCGACAGAAATCACTCAGCAAG 59.586 50.000 0.00 0.00 0.00 4.01
1493 3991 2.812591 CAGAAATCACTCAGCAAGCACT 59.187 45.455 0.00 0.00 0.00 4.40
1544 4042 8.986929 ATTTCTAATTAATCTCTCCACCCAAG 57.013 34.615 0.00 0.00 0.00 3.61
1814 4312 8.179509 TCCTGTATACTTTGCTCTAGGTAATC 57.820 38.462 4.17 0.00 0.00 1.75
1815 4313 7.232941 TCCTGTATACTTTGCTCTAGGTAATCC 59.767 40.741 4.17 0.00 0.00 3.01
1817 4315 9.298250 CTGTATACTTTGCTCTAGGTAATCCTA 57.702 37.037 4.17 0.00 44.58 2.94
2053 4556 4.323417 CAATAGTTTGGTACAGGTGAGCA 58.677 43.478 0.00 0.00 42.39 4.26
2055 4558 2.851195 AGTTTGGTACAGGTGAGCAAG 58.149 47.619 0.00 0.00 42.39 4.01
2121 4630 5.682234 TGCTTTATGATTGACTCTCTCCA 57.318 39.130 0.00 0.00 0.00 3.86
2123 4632 6.111382 TGCTTTATGATTGACTCTCTCCAAG 58.889 40.000 0.00 0.00 0.00 3.61
2168 4679 7.428183 GGTTGCAATATTTGTGAGTATTGTACG 59.572 37.037 0.59 0.00 39.39 3.67
2181 4692 6.073980 TGAGTATTGTACGAGAAAAGTTGTGC 60.074 38.462 0.00 0.00 0.00 4.57
2183 4694 3.936902 TGTACGAGAAAAGTTGTGCAC 57.063 42.857 10.75 10.75 0.00 4.57
2194 4707 2.105984 TTGTGCACAACAGTGGAGC 58.894 52.632 27.96 0.00 40.74 4.70
2238 4762 2.753043 GGCTACCGGTCCTCGACA 60.753 66.667 12.40 0.00 42.43 4.35
2239 4763 2.488820 GCTACCGGTCCTCGACAC 59.511 66.667 12.40 0.00 42.43 3.67
2245 4769 2.571216 CGGTCCTCGACACCCAACT 61.571 63.158 3.63 0.00 42.43 3.16
2246 4770 1.004918 GGTCCTCGACACCCAACTG 60.005 63.158 0.00 0.00 33.68 3.16
2251 4775 1.238439 CTCGACACCCAACTGCATTT 58.762 50.000 0.00 0.00 0.00 2.32
2252 4776 1.197721 CTCGACACCCAACTGCATTTC 59.802 52.381 0.00 0.00 0.00 2.17
2255 4779 2.034558 CGACACCCAACTGCATTTCTTT 59.965 45.455 0.00 0.00 0.00 2.52
2257 4781 4.441792 GACACCCAACTGCATTTCTTTTT 58.558 39.130 0.00 0.00 0.00 1.94
2258 4782 4.190772 ACACCCAACTGCATTTCTTTTTG 58.809 39.130 0.00 0.00 0.00 2.44
2259 4783 3.002553 CACCCAACTGCATTTCTTTTTGC 59.997 43.478 0.00 0.00 39.33 3.68
2263 4787 1.431496 CTGCATTTCTTTTTGCGGGG 58.569 50.000 0.00 0.00 41.80 5.73
2264 4788 1.000731 CTGCATTTCTTTTTGCGGGGA 59.999 47.619 0.00 0.00 41.80 4.81
2265 4789 1.622811 TGCATTTCTTTTTGCGGGGAT 59.377 42.857 0.00 0.00 41.80 3.85
2266 4790 2.038295 TGCATTTCTTTTTGCGGGGATT 59.962 40.909 0.00 0.00 41.80 3.01
2267 4791 3.259374 TGCATTTCTTTTTGCGGGGATTA 59.741 39.130 0.00 0.00 41.80 1.75
2268 4792 4.081198 TGCATTTCTTTTTGCGGGGATTAT 60.081 37.500 0.00 0.00 41.80 1.28
2269 4793 4.875536 GCATTTCTTTTTGCGGGGATTATT 59.124 37.500 0.00 0.00 0.00 1.40
2317 4841 7.655236 TGCAAAACATTTTAATCACCATGAG 57.345 32.000 0.00 0.00 0.00 2.90
2340 4864 6.864342 AGTTCTTGTAACTATGTATCACGCT 58.136 36.000 0.00 0.00 0.00 5.07
2350 4874 3.570926 TGTATCACGCTATCCGATTCC 57.429 47.619 0.00 0.00 41.02 3.01
2351 4875 2.230508 TGTATCACGCTATCCGATTCCC 59.769 50.000 0.00 0.00 41.02 3.97
2352 4876 1.338107 ATCACGCTATCCGATTCCCA 58.662 50.000 0.00 0.00 41.02 4.37
2355 4879 1.867233 CACGCTATCCGATTCCCAAAG 59.133 52.381 0.00 0.00 41.02 2.77
2356 4880 0.868406 CGCTATCCGATTCCCAAAGC 59.132 55.000 0.00 0.00 40.02 3.51
2357 4881 1.541233 CGCTATCCGATTCCCAAAGCT 60.541 52.381 0.00 0.00 40.02 3.74
2358 4882 2.576615 GCTATCCGATTCCCAAAGCTT 58.423 47.619 0.00 0.00 0.00 3.74
2359 4883 3.740115 GCTATCCGATTCCCAAAGCTTA 58.260 45.455 0.00 0.00 0.00 3.09
2369 6686 6.349280 CGATTCCCAAAGCTTAGAAATGTTGA 60.349 38.462 0.00 0.00 0.00 3.18
2371 6688 4.766891 TCCCAAAGCTTAGAAATGTTGAGG 59.233 41.667 0.00 0.00 0.00 3.86
2377 6694 7.856145 AAGCTTAGAAATGTTGAGGATACAG 57.144 36.000 0.00 0.00 41.41 2.74
2386 6703 3.327757 TGTTGAGGATACAGGATATGCCC 59.672 47.826 0.00 0.00 37.37 5.36
2418 6735 6.966534 GGAATGGTCCATTATTGAAGATGT 57.033 37.500 17.33 0.00 44.26 3.06
2439 6759 2.538437 TGCAACATCAACAACAACTGC 58.462 42.857 0.00 0.00 0.00 4.40
2462 6782 2.079326 GGGAAAGAGGAAGCCCTGT 58.921 57.895 0.00 0.00 44.53 4.00
2478 6799 1.142465 CCTGTCCCAAGGATCCAGATG 59.858 57.143 15.82 9.76 40.02 2.90
2479 6800 0.548031 TGTCCCAAGGATCCAGATGC 59.452 55.000 15.82 0.00 32.73 3.91
2480 6801 0.842635 GTCCCAAGGATCCAGATGCT 59.157 55.000 15.82 0.00 41.44 3.79
2481 6802 0.841961 TCCCAAGGATCCAGATGCTG 59.158 55.000 15.82 4.43 39.51 4.41
2482 6803 0.822532 CCCAAGGATCCAGATGCTGC 60.823 60.000 15.82 0.00 39.51 5.25
2484 6805 0.106868 CAAGGATCCAGATGCTGCCA 60.107 55.000 15.82 0.00 39.51 4.92
2485 6806 0.106819 AAGGATCCAGATGCTGCCAC 60.107 55.000 15.82 0.00 39.51 5.01
2486 6807 1.890979 GGATCCAGATGCTGCCACG 60.891 63.158 6.95 0.00 0.00 4.94
2487 6808 2.515523 ATCCAGATGCTGCCACGC 60.516 61.111 0.00 0.00 0.00 5.34
2488 6809 2.937379 GATCCAGATGCTGCCACGCT 62.937 60.000 0.00 0.00 0.00 5.07
2489 6810 2.547640 ATCCAGATGCTGCCACGCTT 62.548 55.000 0.00 0.00 0.00 4.68
2490 6811 2.483745 CAGATGCTGCCACGCTTG 59.516 61.111 0.00 0.00 0.00 4.01
2491 6812 2.036571 CAGATGCTGCCACGCTTGA 61.037 57.895 0.00 0.00 0.00 3.02
2492 6813 1.302752 AGATGCTGCCACGCTTGAA 60.303 52.632 0.00 0.00 0.00 2.69
2493 6814 0.890542 AGATGCTGCCACGCTTGAAA 60.891 50.000 0.00 0.00 0.00 2.69
2494 6815 0.171903 GATGCTGCCACGCTTGAAAT 59.828 50.000 0.00 0.00 0.00 2.17
2495 6816 0.108992 ATGCTGCCACGCTTGAAATG 60.109 50.000 0.00 0.00 0.00 2.32
2496 6817 1.171549 TGCTGCCACGCTTGAAATGA 61.172 50.000 0.00 0.00 0.00 2.57
2497 6818 0.171903 GCTGCCACGCTTGAAATGAT 59.828 50.000 0.00 0.00 0.00 2.45
2498 6819 1.403249 GCTGCCACGCTTGAAATGATT 60.403 47.619 0.00 0.00 0.00 2.57
2499 6820 2.256174 CTGCCACGCTTGAAATGATTG 58.744 47.619 0.00 0.00 0.00 2.67
2500 6821 1.885233 TGCCACGCTTGAAATGATTGA 59.115 42.857 0.00 0.00 0.00 2.57
2548 6869 0.904865 TCTCCCACGACAGCTTGGAT 60.905 55.000 3.60 0.00 35.54 3.41
2570 6891 0.971386 CAGGCAACCAGCTTGGAATT 59.029 50.000 8.91 0.00 45.77 2.17
2572 6893 0.671472 GGCAACCAGCTTGGAATTGC 60.671 55.000 15.80 15.80 44.24 3.56
2594 6915 5.028549 CTCCATTTAAGAGGAGCAAGCTA 57.971 43.478 11.07 0.00 44.37 3.32
2602 6923 2.235898 AGAGGAGCAAGCTACTTGAAGG 59.764 50.000 8.44 0.00 43.42 3.46
2608 6929 2.030805 GCAAGCTACTTGAAGGTGTTGG 60.031 50.000 11.38 0.00 43.42 3.77
2638 6959 6.042552 CCTCCTATTCCTCTCAAAGATGCTTA 59.957 42.308 0.00 0.00 0.00 3.09
2642 6963 9.956640 CCTATTCCTCTCAAAGATGCTTATAAT 57.043 33.333 0.00 0.00 0.00 1.28
2655 6977 4.702831 TGCTTATAATCGCTGGATGTGAA 58.297 39.130 0.00 0.00 38.81 3.18
2666 6988 2.168106 CTGGATGTGAAGTCCTGGAGAG 59.832 54.545 0.00 0.00 36.68 3.20
2670 6992 1.353091 GTGAAGTCCTGGAGAGGGTT 58.647 55.000 0.00 0.00 40.25 4.11
2671 6993 1.276705 GTGAAGTCCTGGAGAGGGTTC 59.723 57.143 0.00 0.00 40.25 3.62
2684 7006 2.112190 GAGGGTTCCAGACCTTCCTAG 58.888 57.143 0.00 0.00 46.14 3.02
2685 7007 2.292323 GAGGGTTCCAGACCTTCCTAGA 60.292 54.545 0.00 0.00 46.14 2.43
2688 7010 2.498078 GGTTCCAGACCTTCCTAGACTG 59.502 54.545 0.00 0.00 45.55 3.51
2694 7016 4.568804 CCAGACCTTCCTAGACTGAGAGAA 60.569 50.000 0.00 0.00 31.84 2.87
2695 7017 4.398044 CAGACCTTCCTAGACTGAGAGAAC 59.602 50.000 0.00 0.00 31.84 3.01
2699 7021 3.269538 TCCTAGACTGAGAGAACTCCG 57.730 52.381 0.00 0.00 41.99 4.63
2715 7037 1.065701 CTCCGTGTATCTGGTTCTCCG 59.934 57.143 0.00 0.00 36.30 4.63
2717 7039 1.202268 CCGTGTATCTGGTTCTCCGAC 60.202 57.143 0.00 0.00 36.30 4.79
2721 7047 2.232941 TGTATCTGGTTCTCCGACAACC 59.767 50.000 0.00 0.00 43.35 3.77
2726 7052 3.064931 CTGGTTCTCCGACAACCTAAAC 58.935 50.000 7.06 0.00 43.43 2.01
2729 7055 3.744942 GGTTCTCCGACAACCTAAACTTC 59.255 47.826 0.00 0.00 40.33 3.01
2747 7073 3.447229 ACTTCAAGTTTGTTGAGGGGTTG 59.553 43.478 2.47 0.00 30.84 3.77
2748 7074 1.754226 TCAAGTTTGTTGAGGGGTTGC 59.246 47.619 0.00 0.00 0.00 4.17
2749 7075 0.744281 AAGTTTGTTGAGGGGTTGCG 59.256 50.000 0.00 0.00 0.00 4.85
2750 7076 0.395173 AGTTTGTTGAGGGGTTGCGT 60.395 50.000 0.00 0.00 0.00 5.24
2753 7079 2.054232 TTGTTGAGGGGTTGCGTTTA 57.946 45.000 0.00 0.00 0.00 2.01
2754 7080 1.310904 TGTTGAGGGGTTGCGTTTAC 58.689 50.000 0.00 0.00 0.00 2.01
2755 7081 1.310904 GTTGAGGGGTTGCGTTTACA 58.689 50.000 0.00 0.00 0.00 2.41
2756 7082 1.265905 GTTGAGGGGTTGCGTTTACAG 59.734 52.381 0.00 0.00 0.00 2.74
2757 7083 0.887387 TGAGGGGTTGCGTTTACAGC 60.887 55.000 0.00 0.00 0.00 4.40
2758 7084 0.887387 GAGGGGTTGCGTTTACAGCA 60.887 55.000 0.00 0.00 43.59 4.41
2759 7085 0.889186 AGGGGTTGCGTTTACAGCAG 60.889 55.000 0.00 0.00 46.01 4.24
2760 7086 1.081442 GGGTTGCGTTTACAGCAGC 60.081 57.895 0.00 0.00 46.01 5.25
2761 7087 1.440353 GGTTGCGTTTACAGCAGCG 60.440 57.895 0.00 0.00 46.01 5.18
2762 7088 1.440353 GTTGCGTTTACAGCAGCGG 60.440 57.895 0.00 0.00 46.01 5.52
2763 7089 3.248630 TTGCGTTTACAGCAGCGGC 62.249 57.895 0.00 0.00 46.01 6.53
2777 7103 4.529219 CGGCGGCTGGATGCAGTA 62.529 66.667 16.22 0.00 45.15 2.74
2778 7104 2.897350 GGCGGCTGGATGCAGTAC 60.897 66.667 16.22 8.38 45.15 2.73
2779 7105 2.187946 GCGGCTGGATGCAGTACT 59.812 61.111 16.22 0.00 45.15 2.73
2780 7106 1.450312 GCGGCTGGATGCAGTACTT 60.450 57.895 16.22 0.00 45.15 2.24
2781 7107 1.432270 GCGGCTGGATGCAGTACTTC 61.432 60.000 16.22 0.00 45.15 3.01
2782 7108 0.176680 CGGCTGGATGCAGTACTTCT 59.823 55.000 16.22 0.00 45.15 2.85
2783 7109 1.804372 CGGCTGGATGCAGTACTTCTC 60.804 57.143 16.22 0.00 45.15 2.87
2784 7110 1.484240 GGCTGGATGCAGTACTTCTCT 59.516 52.381 16.22 0.00 45.15 3.10
2785 7111 2.548875 GCTGGATGCAGTACTTCTCTG 58.451 52.381 16.22 0.00 42.31 3.35
2789 7115 4.900154 GCAGTACTTCTCTGCGCT 57.100 55.556 9.73 0.00 46.39 5.92
2790 7116 2.367844 GCAGTACTTCTCTGCGCTG 58.632 57.895 9.73 8.88 46.39 5.18
2791 7117 1.691215 GCAGTACTTCTCTGCGCTGC 61.691 60.000 9.73 1.38 46.39 5.25
2792 7118 0.389037 CAGTACTTCTCTGCGCTGCA 60.389 55.000 9.73 3.35 36.92 4.41
2805 7131 3.717294 CTGCAGGTACCGGGGCTT 61.717 66.667 21.44 0.00 0.00 4.35
2806 7132 3.682292 CTGCAGGTACCGGGGCTTC 62.682 68.421 21.44 4.23 0.00 3.86
2807 7133 3.400054 GCAGGTACCGGGGCTTCT 61.400 66.667 14.25 0.00 0.00 2.85
2808 7134 2.901042 CAGGTACCGGGGCTTCTC 59.099 66.667 6.32 0.00 0.00 2.87
2809 7135 1.686110 CAGGTACCGGGGCTTCTCT 60.686 63.158 6.32 0.00 0.00 3.10
2810 7136 1.686110 AGGTACCGGGGCTTCTCTG 60.686 63.158 6.32 0.00 0.00 3.35
2811 7137 1.988406 GGTACCGGGGCTTCTCTGT 60.988 63.158 6.32 0.00 0.00 3.41
2812 7138 1.218316 GTACCGGGGCTTCTCTGTG 59.782 63.158 6.32 0.00 0.00 3.66
2813 7139 1.229082 TACCGGGGCTTCTCTGTGT 60.229 57.895 6.32 0.00 0.00 3.72
2814 7140 0.040058 TACCGGGGCTTCTCTGTGTA 59.960 55.000 6.32 0.00 0.00 2.90
2815 7141 0.834687 ACCGGGGCTTCTCTGTGTAA 60.835 55.000 6.32 0.00 0.00 2.41
2816 7142 0.323629 CCGGGGCTTCTCTGTGTAAA 59.676 55.000 0.00 0.00 0.00 2.01
2817 7143 1.439679 CGGGGCTTCTCTGTGTAAAC 58.560 55.000 0.00 0.00 0.00 2.01
2818 7144 1.439679 GGGGCTTCTCTGTGTAAACG 58.560 55.000 0.00 0.00 0.00 3.60
2819 7145 1.270678 GGGGCTTCTCTGTGTAAACGT 60.271 52.381 0.00 0.00 0.00 3.99
2820 7146 1.798813 GGGCTTCTCTGTGTAAACGTG 59.201 52.381 0.00 0.00 0.00 4.49
2821 7147 1.798813 GGCTTCTCTGTGTAAACGTGG 59.201 52.381 0.00 0.00 0.00 4.94
2822 7148 1.194772 GCTTCTCTGTGTAAACGTGGC 59.805 52.381 0.00 0.00 0.00 5.01
2823 7149 1.798813 CTTCTCTGTGTAAACGTGGCC 59.201 52.381 0.00 0.00 0.00 5.36
2824 7150 1.045407 TCTCTGTGTAAACGTGGCCT 58.955 50.000 3.32 0.00 0.00 5.19
2825 7151 2.241160 TCTCTGTGTAAACGTGGCCTA 58.759 47.619 3.32 0.00 0.00 3.93
2826 7152 2.230508 TCTCTGTGTAAACGTGGCCTAG 59.769 50.000 3.32 0.00 0.00 3.02
2827 7153 2.230508 CTCTGTGTAAACGTGGCCTAGA 59.769 50.000 3.32 0.00 0.00 2.43
2828 7154 2.230508 TCTGTGTAAACGTGGCCTAGAG 59.769 50.000 3.32 0.00 0.00 2.43
2829 7155 2.230508 CTGTGTAAACGTGGCCTAGAGA 59.769 50.000 3.32 0.00 0.00 3.10
2830 7156 2.230508 TGTGTAAACGTGGCCTAGAGAG 59.769 50.000 3.32 0.00 0.00 3.20
2831 7157 2.230750 GTGTAAACGTGGCCTAGAGAGT 59.769 50.000 3.32 0.00 0.00 3.24
2832 7158 3.441572 GTGTAAACGTGGCCTAGAGAGTA 59.558 47.826 3.32 0.00 0.00 2.59
2833 7159 4.081406 TGTAAACGTGGCCTAGAGAGTAA 58.919 43.478 3.32 0.00 0.00 2.24
2834 7160 3.870633 AAACGTGGCCTAGAGAGTAAG 57.129 47.619 3.32 0.00 0.00 2.34
2835 7161 2.803030 ACGTGGCCTAGAGAGTAAGA 57.197 50.000 3.32 0.00 0.00 2.10
2836 7162 3.083122 ACGTGGCCTAGAGAGTAAGAA 57.917 47.619 3.32 0.00 0.00 2.52
2837 7163 3.018149 ACGTGGCCTAGAGAGTAAGAAG 58.982 50.000 3.32 0.00 0.00 2.85
2838 7164 3.280295 CGTGGCCTAGAGAGTAAGAAGA 58.720 50.000 3.32 0.00 0.00 2.87
2839 7165 3.886505 CGTGGCCTAGAGAGTAAGAAGAT 59.113 47.826 3.32 0.00 0.00 2.40
2840 7166 5.064558 CGTGGCCTAGAGAGTAAGAAGATA 58.935 45.833 3.32 0.00 0.00 1.98
2841 7167 5.049267 CGTGGCCTAGAGAGTAAGAAGATAC 60.049 48.000 3.32 0.00 0.00 2.24
2842 7168 6.066032 GTGGCCTAGAGAGTAAGAAGATACT 58.934 44.000 3.32 0.00 38.81 2.12
2851 7177 6.628919 GAGTAAGAAGATACTCCCTCTGTC 57.371 45.833 3.62 0.00 43.88 3.51
2852 7178 5.451354 AGTAAGAAGATACTCCCTCTGTCC 58.549 45.833 0.00 0.00 30.26 4.02
2853 7179 3.322191 AGAAGATACTCCCTCTGTCCC 57.678 52.381 0.00 0.00 0.00 4.46
2854 7180 2.587777 AGAAGATACTCCCTCTGTCCCA 59.412 50.000 0.00 0.00 0.00 4.37
2855 7181 3.208692 AGAAGATACTCCCTCTGTCCCAT 59.791 47.826 0.00 0.00 0.00 4.00
2856 7182 4.420552 AGAAGATACTCCCTCTGTCCCATA 59.579 45.833 0.00 0.00 0.00 2.74
2857 7183 4.834406 AGATACTCCCTCTGTCCCATAA 57.166 45.455 0.00 0.00 0.00 1.90
2858 7184 5.361630 AGATACTCCCTCTGTCCCATAAT 57.638 43.478 0.00 0.00 0.00 1.28
2859 7185 6.485388 AGATACTCCCTCTGTCCCATAATA 57.515 41.667 0.00 0.00 0.00 0.98
2860 7186 7.062584 AGATACTCCCTCTGTCCCATAATAT 57.937 40.000 0.00 0.00 0.00 1.28
2861 7187 8.188501 AGATACTCCCTCTGTCCCATAATATA 57.811 38.462 0.00 0.00 0.00 0.86
2862 7188 8.633724 AGATACTCCCTCTGTCCCATAATATAA 58.366 37.037 0.00 0.00 0.00 0.98
2863 7189 9.268282 GATACTCCCTCTGTCCCATAATATAAA 57.732 37.037 0.00 0.00 0.00 1.40
2864 7190 7.947782 ACTCCCTCTGTCCCATAATATAAAA 57.052 36.000 0.00 0.00 0.00 1.52
2865 7191 8.525729 ACTCCCTCTGTCCCATAATATAAAAT 57.474 34.615 0.00 0.00 0.00 1.82
2866 7192 8.606830 ACTCCCTCTGTCCCATAATATAAAATC 58.393 37.037 0.00 0.00 0.00 2.17
2867 7193 7.620880 TCCCTCTGTCCCATAATATAAAATCG 58.379 38.462 0.00 0.00 0.00 3.34
2868 7194 7.236847 TCCCTCTGTCCCATAATATAAAATCGT 59.763 37.037 0.00 0.00 0.00 3.73
2869 7195 7.883311 CCCTCTGTCCCATAATATAAAATCGTT 59.117 37.037 0.00 0.00 0.00 3.85
2870 7196 9.284968 CCTCTGTCCCATAATATAAAATCGTTT 57.715 33.333 0.00 0.00 0.00 3.60
2873 7199 9.180678 CTGTCCCATAATATAAAATCGTTTTGC 57.819 33.333 6.13 0.00 34.19 3.68
2874 7200 8.687242 TGTCCCATAATATAAAATCGTTTTGCA 58.313 29.630 6.13 0.00 34.19 4.08
2875 7201 9.522804 GTCCCATAATATAAAATCGTTTTGCAA 57.477 29.630 0.00 0.00 34.19 4.08
2876 7202 9.743057 TCCCATAATATAAAATCGTTTTGCAAG 57.257 29.630 0.00 0.00 34.19 4.01
2877 7203 8.487176 CCCATAATATAAAATCGTTTTGCAAGC 58.513 33.333 0.00 0.00 34.19 4.01
2878 7204 9.248291 CCATAATATAAAATCGTTTTGCAAGCT 57.752 29.630 0.00 0.00 34.19 3.74
2882 7208 9.855021 AATATAAAATCGTTTTGCAAGCTACTT 57.145 25.926 0.00 0.00 34.19 2.24
2883 7209 5.888412 AAAATCGTTTTGCAAGCTACTTG 57.112 34.783 0.00 2.95 43.57 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 5.171339 AGCAGACATGATATAATGGGGAC 57.829 43.478 0.00 0.00 31.46 4.46
208 222 6.373774 AGCATCAGTTTCTTCTGGTATTTCTG 59.626 38.462 0.00 0.00 36.25 3.02
390 406 1.000052 TGTACCGCGAATGACAAGACA 60.000 47.619 8.23 0.00 0.00 3.41
404 420 5.535333 TCTAAAAGTGTTTCCTCTGTACCG 58.465 41.667 0.00 0.00 0.00 4.02
665 3015 1.202582 GCAGCCGAGAAGTCTGACTAA 59.797 52.381 11.30 0.00 0.00 2.24
819 3181 5.458779 GGTCAAAATGAAAGGAAACAAGTCG 59.541 40.000 0.00 0.00 0.00 4.18
900 3266 3.010200 AGGCCTCTTGCTATTCCTTTG 57.990 47.619 0.00 0.00 40.92 2.77
1054 3424 2.420827 CCCGGGTTGTGTTAGCATGATA 60.421 50.000 14.18 0.00 0.00 2.15
1126 3602 7.661127 AACACGCTATACTAAACATTCAACA 57.339 32.000 0.00 0.00 0.00 3.33
1130 3606 9.469239 GTACAAAACACGCTATACTAAACATTC 57.531 33.333 0.00 0.00 0.00 2.67
1268 3747 7.004086 TCTTCAAACCACTAACAATCTCCAAT 58.996 34.615 0.00 0.00 0.00 3.16
1415 3895 2.624838 CTGCAGAAAATGGACACTTGGT 59.375 45.455 8.42 0.00 0.00 3.67
1489 3987 2.695359 TCACTACCGGAATCAAAGTGC 58.305 47.619 9.46 0.00 37.94 4.40
1493 3991 6.555738 TCCCTATATTCACTACCGGAATCAAA 59.444 38.462 9.46 0.00 36.45 2.69
1814 4312 2.554032 CACTGGCTTGTTCACCTTTAGG 59.446 50.000 0.00 0.00 42.17 2.69
1815 4313 3.476552 TCACTGGCTTGTTCACCTTTAG 58.523 45.455 0.00 0.00 0.00 1.85
1817 4315 2.092429 TCTCACTGGCTTGTTCACCTTT 60.092 45.455 0.00 0.00 0.00 3.11
1846 4347 4.993584 GTGATACTCATTGCATTCGAGGAT 59.006 41.667 5.23 5.23 32.85 3.24
1919 4420 1.405526 GCTCCGCTCCTGATGTACAAA 60.406 52.381 0.00 0.00 0.00 2.83
1932 4433 1.069823 CTCATTCATACTGGCTCCGCT 59.930 52.381 0.00 0.00 0.00 5.52
1946 4447 6.655003 TCAGTTTAGATGAACCCAACTCATTC 59.345 38.462 0.00 0.00 33.63 2.67
1949 4450 5.560722 TCAGTTTAGATGAACCCAACTCA 57.439 39.130 0.00 0.00 0.00 3.41
2053 4556 5.234116 CGAAGCCAAAACAAATGCTTAACTT 59.766 36.000 0.00 0.00 43.63 2.66
2055 4558 5.005452 CGAAGCCAAAACAAATGCTTAAC 57.995 39.130 0.00 0.00 43.63 2.01
2111 4614 3.676291 AACTTCAGCTTGGAGAGAGTC 57.324 47.619 0.00 0.00 0.00 3.36
2123 4632 2.623416 ACCACCTAAGCAAAACTTCAGC 59.377 45.455 0.00 0.00 39.97 4.26
2181 4692 2.792500 TGGTTGCTCCACTGTTGTG 58.208 52.632 0.00 0.00 41.93 3.33
2194 4707 1.134907 GCCTCCTTGCATCAATGGTTG 60.135 52.381 0.00 0.00 0.00 3.77
2202 4715 2.832201 GGCAGGCCTCCTTGCATC 60.832 66.667 15.79 0.00 32.24 3.91
2235 4759 3.733443 AAAGAAATGCAGTTGGGTGTC 57.267 42.857 3.09 0.00 0.00 3.67
2238 4762 3.205338 GCAAAAAGAAATGCAGTTGGGT 58.795 40.909 3.09 0.00 42.12 4.51
2239 4763 2.221517 CGCAAAAAGAAATGCAGTTGGG 59.778 45.455 3.09 0.00 42.68 4.12
2245 4769 1.043816 TCCCCGCAAAAAGAAATGCA 58.956 45.000 0.00 0.00 42.68 3.96
2246 4770 2.385013 ATCCCCGCAAAAAGAAATGC 57.615 45.000 0.00 0.00 39.17 3.56
2294 4818 7.656707 ACTCATGGTGATTAAAATGTTTTGC 57.343 32.000 1.16 0.00 0.00 3.68
2311 4835 9.035607 GTGATACATAGTTACAAGAACTCATGG 57.964 37.037 0.00 0.00 0.00 3.66
2315 4839 6.973474 AGCGTGATACATAGTTACAAGAACTC 59.027 38.462 0.00 0.00 0.00 3.01
2317 4841 8.798748 ATAGCGTGATACATAGTTACAAGAAC 57.201 34.615 0.00 0.00 0.00 3.01
2340 4864 5.623956 TTCTAAGCTTTGGGAATCGGATA 57.376 39.130 3.20 0.00 0.00 2.59
2350 4874 5.964958 TCCTCAACATTTCTAAGCTTTGG 57.035 39.130 3.20 0.00 0.00 3.28
2351 4875 8.044060 TGTATCCTCAACATTTCTAAGCTTTG 57.956 34.615 3.20 1.97 0.00 2.77
2352 4876 7.337942 CCTGTATCCTCAACATTTCTAAGCTTT 59.662 37.037 3.20 0.00 0.00 3.51
2355 4879 6.349300 TCCTGTATCCTCAACATTTCTAAGC 58.651 40.000 0.00 0.00 0.00 3.09
2358 4882 8.097038 GCATATCCTGTATCCTCAACATTTCTA 58.903 37.037 0.00 0.00 0.00 2.10
2359 4883 6.939163 GCATATCCTGTATCCTCAACATTTCT 59.061 38.462 0.00 0.00 0.00 2.52
2369 6686 3.328931 CAGTTGGGCATATCCTGTATCCT 59.671 47.826 0.00 0.00 34.39 3.24
2371 6688 3.679389 CCAGTTGGGCATATCCTGTATC 58.321 50.000 0.00 0.00 34.39 2.24
2386 6703 0.698238 TGGACCATTCCTCCCAGTTG 59.302 55.000 0.00 0.00 43.31 3.16
2402 6719 6.587206 TGTTGCAACATCTTCAATAATGGA 57.413 33.333 27.96 0.00 33.17 3.41
2418 6735 2.928757 GCAGTTGTTGTTGATGTTGCAA 59.071 40.909 0.00 0.00 0.00 4.08
2435 6755 0.836400 TCCTCTTTCCCTTCCGCAGT 60.836 55.000 0.00 0.00 0.00 4.40
2436 6756 0.324943 TTCCTCTTTCCCTTCCGCAG 59.675 55.000 0.00 0.00 0.00 5.18
2439 6759 0.393132 GGCTTCCTCTTTCCCTTCCG 60.393 60.000 0.00 0.00 0.00 4.30
2462 6782 0.841961 CAGCATCTGGATCCTTGGGA 59.158 55.000 14.23 6.54 35.55 4.37
2478 6799 0.171903 ATCATTTCAAGCGTGGCAGC 59.828 50.000 0.00 0.00 37.41 5.25
2479 6800 2.095110 TCAATCATTTCAAGCGTGGCAG 60.095 45.455 0.00 0.00 0.00 4.85
2480 6801 1.885233 TCAATCATTTCAAGCGTGGCA 59.115 42.857 0.00 0.00 0.00 4.92
2481 6802 2.634982 TCAATCATTTCAAGCGTGGC 57.365 45.000 0.00 0.00 0.00 5.01
2482 6803 5.065090 TGAGTATCAATCATTTCAAGCGTGG 59.935 40.000 0.00 0.00 45.97 4.94
2498 6819 2.204463 TGGGGCATCCTTTGAGTATCA 58.796 47.619 0.00 0.00 39.19 2.15
2499 6820 3.217626 CTTGGGGCATCCTTTGAGTATC 58.782 50.000 0.00 0.00 36.20 2.24
2500 6821 2.687914 GCTTGGGGCATCCTTTGAGTAT 60.688 50.000 0.00 0.00 41.35 2.12
2551 6872 0.971386 AATTCCAAGCTGGTTGCCTG 59.029 50.000 13.83 1.40 44.23 4.85
2590 6911 2.039084 CCTCCAACACCTTCAAGTAGCT 59.961 50.000 0.00 0.00 0.00 3.32
2594 6915 1.143073 GGTCCTCCAACACCTTCAAGT 59.857 52.381 0.00 0.00 0.00 3.16
2618 6939 9.645059 CGATTATAAGCATCTTTGAGAGGAATA 57.355 33.333 1.10 0.00 0.00 1.75
2623 6944 6.128607 CCAGCGATTATAAGCATCTTTGAGAG 60.129 42.308 1.10 0.00 35.48 3.20
2628 6949 6.000219 ACATCCAGCGATTATAAGCATCTTT 59.000 36.000 1.10 0.00 35.48 2.52
2629 6950 5.410746 CACATCCAGCGATTATAAGCATCTT 59.589 40.000 1.10 0.00 35.48 2.40
2638 6959 3.389329 AGGACTTCACATCCAGCGATTAT 59.611 43.478 0.00 0.00 38.86 1.28
2642 6963 0.247460 CAGGACTTCACATCCAGCGA 59.753 55.000 0.00 0.00 38.86 4.93
2643 6964 0.742281 CCAGGACTTCACATCCAGCG 60.742 60.000 0.00 0.00 38.86 5.18
2655 6977 1.868810 TGGAACCCTCTCCAGGACT 59.131 57.895 0.00 0.00 43.65 3.85
2670 6992 2.920271 TCTCAGTCTAGGAAGGTCTGGA 59.080 50.000 0.00 0.00 0.00 3.86
2671 6993 3.053991 TCTCTCAGTCTAGGAAGGTCTGG 60.054 52.174 0.00 0.00 0.00 3.86
2674 6996 4.595986 AGTTCTCTCAGTCTAGGAAGGTC 58.404 47.826 0.00 0.00 0.00 3.85
2681 7003 3.340034 ACACGGAGTTCTCTCAGTCTAG 58.660 50.000 0.00 0.00 44.65 2.43
2684 7006 3.942748 AGATACACGGAGTTCTCTCAGTC 59.057 47.826 0.00 0.00 44.65 3.51
2685 7007 3.692101 CAGATACACGGAGTTCTCTCAGT 59.308 47.826 0.00 0.00 46.65 3.41
2688 7010 3.018149 ACCAGATACACGGAGTTCTCTC 58.982 50.000 0.00 0.00 41.61 3.20
2694 7016 2.100989 GGAGAACCAGATACACGGAGT 58.899 52.381 0.00 0.00 37.40 3.85
2695 7017 1.065701 CGGAGAACCAGATACACGGAG 59.934 57.143 0.00 0.00 35.59 4.63
2699 7021 3.251571 GTTGTCGGAGAACCAGATACAC 58.748 50.000 6.75 0.00 39.69 2.90
2717 7039 6.751888 CCTCAACAAACTTGAAGTTTAGGTTG 59.248 38.462 29.22 29.22 45.84 3.77
2721 7047 5.359860 ACCCCTCAACAAACTTGAAGTTTAG 59.640 40.000 21.48 15.13 45.84 1.85
2726 7052 3.737972 GCAACCCCTCAACAAACTTGAAG 60.738 47.826 0.00 0.00 0.00 3.02
2729 7055 1.535860 CGCAACCCCTCAACAAACTTG 60.536 52.381 0.00 0.00 0.00 3.16
2747 7073 4.794241 CGCCGCTGCTGTAAACGC 62.794 66.667 0.00 0.00 34.43 4.84
2748 7074 4.147322 CCGCCGCTGCTGTAAACG 62.147 66.667 0.00 0.00 34.43 3.60
2749 7075 4.460873 GCCGCCGCTGCTGTAAAC 62.461 66.667 0.00 0.00 34.43 2.01
2750 7076 4.697756 AGCCGCCGCTGCTGTAAA 62.698 61.111 8.67 0.00 46.19 2.01
2760 7086 4.529219 TACTGCATCCAGCCGCCG 62.529 66.667 0.00 0.00 43.02 6.46
2761 7087 2.876368 AAGTACTGCATCCAGCCGCC 62.876 60.000 0.00 0.00 43.02 6.13
2762 7088 1.432270 GAAGTACTGCATCCAGCCGC 61.432 60.000 0.00 0.00 43.02 6.53
2763 7089 0.176680 AGAAGTACTGCATCCAGCCG 59.823 55.000 3.00 0.00 43.02 5.52
2764 7090 1.484240 AGAGAAGTACTGCATCCAGCC 59.516 52.381 3.00 0.00 43.02 4.85
2765 7091 2.548875 CAGAGAAGTACTGCATCCAGC 58.451 52.381 3.00 0.00 43.02 4.85
2773 7099 0.389037 TGCAGCGCAGAGAAGTACTG 60.389 55.000 11.47 0.00 38.27 2.74
2774 7100 1.967535 TGCAGCGCAGAGAAGTACT 59.032 52.632 11.47 0.00 33.32 2.73
2775 7101 4.578913 TGCAGCGCAGAGAAGTAC 57.421 55.556 11.47 0.00 33.32 2.73
2788 7114 3.682292 GAAGCCCCGGTACCTGCAG 62.682 68.421 10.90 6.78 0.00 4.41
2789 7115 3.712907 GAAGCCCCGGTACCTGCA 61.713 66.667 10.90 0.00 0.00 4.41
2790 7116 3.387225 GAGAAGCCCCGGTACCTGC 62.387 68.421 10.90 9.94 0.00 4.85
2791 7117 1.686110 AGAGAAGCCCCGGTACCTG 60.686 63.158 10.90 2.79 0.00 4.00
2792 7118 1.686110 CAGAGAAGCCCCGGTACCT 60.686 63.158 10.90 0.00 0.00 3.08
2793 7119 1.988406 ACAGAGAAGCCCCGGTACC 60.988 63.158 0.16 0.16 0.00 3.34
2794 7120 1.218316 CACAGAGAAGCCCCGGTAC 59.782 63.158 0.00 0.00 0.00 3.34
2795 7121 0.040058 TACACAGAGAAGCCCCGGTA 59.960 55.000 0.00 0.00 0.00 4.02
2796 7122 0.834687 TTACACAGAGAAGCCCCGGT 60.835 55.000 0.00 0.00 0.00 5.28
2797 7123 0.323629 TTTACACAGAGAAGCCCCGG 59.676 55.000 0.00 0.00 0.00 5.73
2798 7124 1.439679 GTTTACACAGAGAAGCCCCG 58.560 55.000 0.00 0.00 0.00 5.73
2799 7125 1.270678 ACGTTTACACAGAGAAGCCCC 60.271 52.381 0.00 0.00 0.00 5.80
2800 7126 1.798813 CACGTTTACACAGAGAAGCCC 59.201 52.381 0.00 0.00 0.00 5.19
2801 7127 1.798813 CCACGTTTACACAGAGAAGCC 59.201 52.381 0.00 0.00 0.00 4.35
2802 7128 1.194772 GCCACGTTTACACAGAGAAGC 59.805 52.381 0.00 0.00 0.00 3.86
2803 7129 1.798813 GGCCACGTTTACACAGAGAAG 59.201 52.381 0.00 0.00 0.00 2.85
2804 7130 1.414919 AGGCCACGTTTACACAGAGAA 59.585 47.619 5.01 0.00 0.00 2.87
2805 7131 1.045407 AGGCCACGTTTACACAGAGA 58.955 50.000 5.01 0.00 0.00 3.10
2806 7132 2.230508 TCTAGGCCACGTTTACACAGAG 59.769 50.000 5.01 0.00 0.00 3.35
2807 7133 2.230508 CTCTAGGCCACGTTTACACAGA 59.769 50.000 5.01 0.00 0.00 3.41
2808 7134 2.230508 TCTCTAGGCCACGTTTACACAG 59.769 50.000 5.01 0.00 0.00 3.66
2809 7135 2.230508 CTCTCTAGGCCACGTTTACACA 59.769 50.000 5.01 0.00 0.00 3.72
2810 7136 2.230750 ACTCTCTAGGCCACGTTTACAC 59.769 50.000 5.01 0.00 0.00 2.90
2811 7137 2.522185 ACTCTCTAGGCCACGTTTACA 58.478 47.619 5.01 0.00 0.00 2.41
2812 7138 4.397417 TCTTACTCTCTAGGCCACGTTTAC 59.603 45.833 5.01 0.00 0.00 2.01
2813 7139 4.592942 TCTTACTCTCTAGGCCACGTTTA 58.407 43.478 5.01 0.00 0.00 2.01
2814 7140 3.428532 TCTTACTCTCTAGGCCACGTTT 58.571 45.455 5.01 0.00 0.00 3.60
2815 7141 3.083122 TCTTACTCTCTAGGCCACGTT 57.917 47.619 5.01 0.00 0.00 3.99
2816 7142 2.803030 TCTTACTCTCTAGGCCACGT 57.197 50.000 5.01 0.00 0.00 4.49
2817 7143 3.280295 TCTTCTTACTCTCTAGGCCACG 58.720 50.000 5.01 0.00 0.00 4.94
2818 7144 6.066032 AGTATCTTCTTACTCTCTAGGCCAC 58.934 44.000 5.01 0.00 0.00 5.01
2819 7145 6.268855 AGTATCTTCTTACTCTCTAGGCCA 57.731 41.667 5.01 0.00 0.00 5.36
2820 7146 5.708697 GGAGTATCTTCTTACTCTCTAGGCC 59.291 48.000 0.00 0.00 44.90 5.19
2821 7147 5.708697 GGGAGTATCTTCTTACTCTCTAGGC 59.291 48.000 10.48 0.00 43.50 3.93
2826 7152 6.362248 ACAGAGGGAGTATCTTCTTACTCTC 58.638 44.000 10.48 7.33 46.02 3.20
2827 7153 6.335781 ACAGAGGGAGTATCTTCTTACTCT 57.664 41.667 10.48 0.00 44.90 3.24
2828 7154 5.533528 GGACAGAGGGAGTATCTTCTTACTC 59.466 48.000 3.56 3.56 44.84 2.59
2829 7155 5.451354 GGACAGAGGGAGTATCTTCTTACT 58.549 45.833 0.00 0.00 35.13 2.24
2830 7156 4.585581 GGGACAGAGGGAGTATCTTCTTAC 59.414 50.000 0.00 0.00 33.73 2.34
2831 7157 4.232122 TGGGACAGAGGGAGTATCTTCTTA 59.768 45.833 0.00 0.00 33.73 2.10
2832 7158 3.012959 TGGGACAGAGGGAGTATCTTCTT 59.987 47.826 0.00 0.00 33.73 2.52
2833 7159 2.587777 TGGGACAGAGGGAGTATCTTCT 59.412 50.000 0.00 0.00 33.73 2.85
2834 7160 3.033659 TGGGACAGAGGGAGTATCTTC 57.966 52.381 0.00 0.00 33.73 2.87
2849 7175 9.522804 TTGCAAAACGATTTTATATTATGGGAC 57.477 29.630 0.00 0.00 0.00 4.46
2850 7176 9.743057 CTTGCAAAACGATTTTATATTATGGGA 57.257 29.630 0.00 0.00 0.00 4.37
2851 7177 8.487176 GCTTGCAAAACGATTTTATATTATGGG 58.513 33.333 0.00 0.00 0.00 4.00
2852 7178 9.248291 AGCTTGCAAAACGATTTTATATTATGG 57.752 29.630 0.00 0.00 0.00 2.74
2856 7182 9.855021 AAGTAGCTTGCAAAACGATTTTATATT 57.145 25.926 0.00 0.00 0.00 1.28
2857 7183 9.289303 CAAGTAGCTTGCAAAACGATTTTATAT 57.711 29.630 0.00 0.00 34.63 0.86
2858 7184 8.667987 CAAGTAGCTTGCAAAACGATTTTATA 57.332 30.769 0.00 0.00 34.63 0.98
2859 7185 7.566858 CAAGTAGCTTGCAAAACGATTTTAT 57.433 32.000 0.00 0.00 34.63 1.40
2860 7186 6.984740 CAAGTAGCTTGCAAAACGATTTTA 57.015 33.333 0.00 0.00 34.63 1.52
2861 7187 5.888412 CAAGTAGCTTGCAAAACGATTTT 57.112 34.783 0.00 0.00 34.63 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.