Multiple sequence alignment - TraesCS2B01G563900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G563900 chr2B 100.000 4956 0 0 1 4956 755625836 755630791 0.000000e+00 9153.0
1 TraesCS2B01G563900 chr2B 86.198 1181 157 5 2775 3949 755593287 755594467 0.000000e+00 1273.0
2 TraesCS2B01G563900 chr2B 89.214 547 51 6 4 546 718963350 718963892 0.000000e+00 676.0
3 TraesCS2B01G563900 chr2B 90.146 274 26 1 4443 4715 755612222 755611949 6.100000e-94 355.0
4 TraesCS2B01G563900 chr2B 95.614 114 4 1 541 654 103893594 103893482 1.100000e-41 182.0
5 TraesCS2B01G563900 chrUn 95.723 1964 48 13 2718 4669 228624980 228626919 0.000000e+00 3129.0
6 TraesCS2B01G563900 chrUn 96.271 1582 51 3 932 2505 228623021 228624602 0.000000e+00 2588.0
7 TraesCS2B01G563900 chrUn 92.905 451 32 0 4506 4956 245871382 245871832 0.000000e+00 656.0
8 TraesCS2B01G563900 chrUn 93.769 337 21 0 4620 4956 260287423 260287087 1.590000e-139 507.0
9 TraesCS2B01G563900 chrUn 78.700 554 89 17 1724 2252 51444028 51444577 4.750000e-90 342.0
10 TraesCS2B01G563900 chrUn 96.500 200 6 1 2525 2723 228624588 228624787 3.700000e-86 329.0
11 TraesCS2B01G563900 chrUn 84.052 232 21 6 4496 4724 252676107 252675889 5.030000e-50 209.0
12 TraesCS2B01G563900 chrUn 84.444 225 21 4 4493 4715 260295306 260295518 5.030000e-50 209.0
13 TraesCS2B01G563900 chrUn 87.255 102 8 4 4124 4224 252676468 252676371 1.460000e-20 111.0
14 TraesCS2B01G563900 chrUn 86.667 105 9 4 4121 4224 260294945 260295045 1.460000e-20 111.0
15 TraesCS2B01G563900 chr6B 86.510 1579 182 23 2815 4383 2074172 2075729 0.000000e+00 1707.0
16 TraesCS2B01G563900 chr6B 93.190 558 30 7 4401 4956 2075717 2076268 0.000000e+00 813.0
17 TraesCS2B01G563900 chr6B 78.189 541 92 16 1732 2252 2308493 2307959 6.190000e-84 322.0
18 TraesCS2B01G563900 chr6B 78.924 223 41 4 2037 2254 5791827 5792048 4.000000e-31 147.0
19 TraesCS2B01G563900 chr6D 87.071 1400 167 12 2815 4205 1490752 1492146 0.000000e+00 1570.0
20 TraesCS2B01G563900 chr6D 88.930 1084 118 2 2876 3957 4150782 4149699 0.000000e+00 1336.0
21 TraesCS2B01G563900 chr6D 96.168 548 18 2 1 547 90875807 90876352 0.000000e+00 893.0
22 TraesCS2B01G563900 chr6D 94.475 543 27 2 4 545 152189322 152188782 0.000000e+00 833.0
23 TraesCS2B01G563900 chr6D 87.563 595 41 4 4138 4712 527633 527052 0.000000e+00 658.0
24 TraesCS2B01G563900 chr6D 86.932 176 23 0 2077 2252 501750 501575 1.090000e-46 198.0
25 TraesCS2B01G563900 chr6D 89.796 98 10 0 1112 1209 502721 502624 5.210000e-25 126.0
26 TraesCS2B01G563900 chr4A 88.045 1146 126 11 2815 3952 744537184 744536042 0.000000e+00 1347.0
27 TraesCS2B01G563900 chr4A 82.759 319 46 4 1722 2033 744539094 744538778 4.890000e-70 276.0
28 TraesCS2B01G563900 chr7A 87.807 1140 128 11 2818 3949 240078 241214 0.000000e+00 1325.0
29 TraesCS2B01G563900 chr7A 92.593 108 7 1 550 656 193577272 193577165 2.390000e-33 154.0
30 TraesCS2B01G563900 chr7A 91.011 89 7 1 554 641 39317196 39317108 8.720000e-23 119.0
31 TraesCS2B01G563900 chr1B 87.609 1146 135 6 2818 3957 567726688 567725544 0.000000e+00 1323.0
32 TraesCS2B01G563900 chr1B 78.595 598 103 16 1704 2279 2356989 2356395 6.060000e-99 372.0
33 TraesCS2B01G563900 chr4D 85.558 1191 161 10 2775 3957 19753361 19752174 0.000000e+00 1236.0
34 TraesCS2B01G563900 chr4D 79.545 220 39 4 2040 2254 19753935 19753717 8.590000e-33 152.0
35 TraesCS2B01G563900 chr4D 79.372 223 40 4 2037 2254 19782723 19782944 8.590000e-33 152.0
36 TraesCS2B01G563900 chr5A 100.000 546 0 0 1 546 606052173 606052718 0.000000e+00 1009.0
37 TraesCS2B01G563900 chr5A 100.000 545 0 0 1 545 534362359 534361815 0.000000e+00 1007.0
38 TraesCS2B01G563900 chr6A 97.243 544 12 2 4 546 612997656 612997115 0.000000e+00 918.0
39 TraesCS2B01G563900 chr6A 96.892 547 13 3 1 546 613042874 613042331 0.000000e+00 913.0
40 TraesCS2B01G563900 chr6A 85.475 179 26 0 2074 2252 3328057 3327879 2.360000e-43 187.0
41 TraesCS2B01G563900 chr6A 82.301 113 12 5 546 656 97078536 97078430 1.900000e-14 91.6
42 TraesCS2B01G563900 chr2D 88.624 545 53 5 4 546 32177772 32177235 0.000000e+00 654.0
43 TraesCS2B01G563900 chr5B 88.483 547 52 7 4 546 324963854 324964393 0.000000e+00 651.0
44 TraesCS2B01G563900 chr1D 77.282 471 82 15 1820 2279 2461403 2460947 2.290000e-63 254.0
45 TraesCS2B01G563900 chr2A 90.244 123 8 3 535 656 426711139 426711020 1.850000e-34 158.0
46 TraesCS2B01G563900 chr3B 91.964 112 8 1 544 654 706928265 706928376 6.640000e-34 156.0
47 TraesCS2B01G563900 chr3B 89.565 115 9 3 544 656 733429782 733429895 5.170000e-30 143.0
48 TraesCS2B01G563900 chr7B 83.735 166 17 7 544 706 621335124 621334966 1.110000e-31 148.0
49 TraesCS2B01G563900 chr7D 82.301 113 12 5 546 656 463035470 463035364 1.900000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G563900 chr2B 755625836 755630791 4955 False 9153.000000 9153 100.000000 1 4956 1 chr2B.!!$F3 4955
1 TraesCS2B01G563900 chr2B 755593287 755594467 1180 False 1273.000000 1273 86.198000 2775 3949 1 chr2B.!!$F2 1174
2 TraesCS2B01G563900 chr2B 718963350 718963892 542 False 676.000000 676 89.214000 4 546 1 chr2B.!!$F1 542
3 TraesCS2B01G563900 chrUn 228623021 228626919 3898 False 2015.333333 3129 96.164667 932 4669 3 chrUn.!!$F3 3737
4 TraesCS2B01G563900 chrUn 51444028 51444577 549 False 342.000000 342 78.700000 1724 2252 1 chrUn.!!$F1 528
5 TraesCS2B01G563900 chr6B 2074172 2076268 2096 False 1260.000000 1707 89.850000 2815 4956 2 chr6B.!!$F2 2141
6 TraesCS2B01G563900 chr6B 2307959 2308493 534 True 322.000000 322 78.189000 1732 2252 1 chr6B.!!$R1 520
7 TraesCS2B01G563900 chr6D 1490752 1492146 1394 False 1570.000000 1570 87.071000 2815 4205 1 chr6D.!!$F1 1390
8 TraesCS2B01G563900 chr6D 4149699 4150782 1083 True 1336.000000 1336 88.930000 2876 3957 1 chr6D.!!$R2 1081
9 TraesCS2B01G563900 chr6D 90875807 90876352 545 False 893.000000 893 96.168000 1 547 1 chr6D.!!$F2 546
10 TraesCS2B01G563900 chr6D 152188782 152189322 540 True 833.000000 833 94.475000 4 545 1 chr6D.!!$R3 541
11 TraesCS2B01G563900 chr6D 527052 527633 581 True 658.000000 658 87.563000 4138 4712 1 chr6D.!!$R1 574
12 TraesCS2B01G563900 chr4A 744536042 744539094 3052 True 811.500000 1347 85.402000 1722 3952 2 chr4A.!!$R1 2230
13 TraesCS2B01G563900 chr7A 240078 241214 1136 False 1325.000000 1325 87.807000 2818 3949 1 chr7A.!!$F1 1131
14 TraesCS2B01G563900 chr1B 567725544 567726688 1144 True 1323.000000 1323 87.609000 2818 3957 1 chr1B.!!$R2 1139
15 TraesCS2B01G563900 chr1B 2356395 2356989 594 True 372.000000 372 78.595000 1704 2279 1 chr1B.!!$R1 575
16 TraesCS2B01G563900 chr4D 19752174 19753935 1761 True 694.000000 1236 82.551500 2040 3957 2 chr4D.!!$R1 1917
17 TraesCS2B01G563900 chr5A 606052173 606052718 545 False 1009.000000 1009 100.000000 1 546 1 chr5A.!!$F1 545
18 TraesCS2B01G563900 chr5A 534361815 534362359 544 True 1007.000000 1007 100.000000 1 545 1 chr5A.!!$R1 544
19 TraesCS2B01G563900 chr6A 612997115 612997656 541 True 918.000000 918 97.243000 4 546 1 chr6A.!!$R3 542
20 TraesCS2B01G563900 chr6A 613042331 613042874 543 True 913.000000 913 96.892000 1 546 1 chr6A.!!$R4 545
21 TraesCS2B01G563900 chr2D 32177235 32177772 537 True 654.000000 654 88.624000 4 546 1 chr2D.!!$R1 542
22 TraesCS2B01G563900 chr5B 324963854 324964393 539 False 651.000000 651 88.483000 4 546 1 chr5B.!!$F1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
733 736 0.036105 CACCATGCACTGCCTGACTA 60.036 55.0 7.80 0.0 0.00 2.59 F
885 888 0.036164 ACACCGCATCCTAAACAGCA 59.964 50.0 0.00 0.0 0.00 4.41 F
906 909 0.036388 CTACGGGCATCAACAGTGGT 60.036 55.0 0.00 0.0 0.00 4.16 F
908 911 0.036388 ACGGGCATCAACAGTGGTAG 60.036 55.0 0.00 0.0 0.00 3.18 F
1657 1660 0.321122 CTGCTGTGAGACCACCCTTC 60.321 60.0 0.00 0.0 42.53 3.46 F
1856 1866 0.451783 GATTTCGCTGCCGGAAATGT 59.548 50.0 16.65 0.0 35.20 2.71 F
1987 2009 0.808755 CAATTACACCGGCAACCCTC 59.191 55.0 0.00 0.0 0.00 4.30 F
2508 2667 1.035139 CAACTTGCTGCATATCCCCC 58.965 55.0 1.84 0.0 0.00 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1719 1725 0.397957 TGGCGTAGGAGCAGGGATAA 60.398 55.000 0.00 0.00 39.27 1.75 R
1965 1987 1.154112 GTTGCCGGTGTAATTGCCG 60.154 57.895 1.90 9.89 46.80 5.69 R
1967 1989 1.214325 GGGTTGCCGGTGTAATTGC 59.786 57.895 1.90 0.00 0.00 3.56 R
2212 2301 1.602311 CTGCTGGAGGGAATACATGC 58.398 55.000 0.00 0.00 0.00 4.06 R
3371 4592 2.035449 GGGCCACCTTTTTACTGTTGTC 59.965 50.000 4.39 0.00 0.00 3.18 R
3484 4705 7.341805 AGAGTATATTTGCTGGTTTGACATCT 58.658 34.615 0.00 0.00 0.00 2.90 R
3619 4840 9.339850 GTGAGTAGTCCTTCTTGTAGATATACA 57.660 37.037 0.00 0.00 0.00 2.29 R
4193 5416 2.151202 CGCTGGACCACAAGTTTGTAT 58.849 47.619 0.00 0.00 39.91 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
547 550 7.672738 CAAAGCACGTACAAATTACTAGTAGG 58.327 38.462 2.23 0.00 0.00 3.18
548 551 5.899299 AGCACGTACAAATTACTAGTAGGG 58.101 41.667 2.23 0.00 0.00 3.53
549 552 5.420104 AGCACGTACAAATTACTAGTAGGGT 59.580 40.000 2.23 3.41 0.00 4.34
550 553 6.071165 AGCACGTACAAATTACTAGTAGGGTT 60.071 38.462 2.23 0.00 0.00 4.11
551 554 6.591448 GCACGTACAAATTACTAGTAGGGTTT 59.409 38.462 2.23 3.89 0.00 3.27
552 555 7.412237 GCACGTACAAATTACTAGTAGGGTTTG 60.412 40.741 22.56 22.56 33.92 2.93
553 556 7.599998 CACGTACAAATTACTAGTAGGGTTTGT 59.400 37.037 27.48 27.48 41.18 2.83
554 557 8.150296 ACGTACAAATTACTAGTAGGGTTTGTT 58.850 33.333 28.48 18.10 39.58 2.83
555 558 8.992073 CGTACAAATTACTAGTAGGGTTTGTTT 58.008 33.333 28.48 17.58 39.58 2.83
557 560 8.756486 ACAAATTACTAGTAGGGTTTGTTTGT 57.244 30.769 23.37 18.16 36.66 2.83
558 561 9.850198 ACAAATTACTAGTAGGGTTTGTTTGTA 57.150 29.630 23.37 2.37 36.66 2.41
563 566 9.904198 TTACTAGTAGGGTTTGTTTGTAAAAGT 57.096 29.630 2.23 0.00 0.00 2.66
564 567 8.217131 ACTAGTAGGGTTTGTTTGTAAAAGTG 57.783 34.615 1.45 0.00 0.00 3.16
565 568 8.048514 ACTAGTAGGGTTTGTTTGTAAAAGTGA 58.951 33.333 1.45 0.00 0.00 3.41
566 569 7.706100 AGTAGGGTTTGTTTGTAAAAGTGAA 57.294 32.000 0.00 0.00 0.00 3.18
567 570 8.124808 AGTAGGGTTTGTTTGTAAAAGTGAAA 57.875 30.769 0.00 0.00 0.00 2.69
568 571 8.030692 AGTAGGGTTTGTTTGTAAAAGTGAAAC 58.969 33.333 0.00 0.00 0.00 2.78
569 572 5.865013 AGGGTTTGTTTGTAAAAGTGAAACG 59.135 36.000 0.00 0.00 45.86 3.60
570 573 5.634439 GGGTTTGTTTGTAAAAGTGAAACGT 59.366 36.000 0.00 0.00 45.86 3.99
571 574 6.145858 GGGTTTGTTTGTAAAAGTGAAACGTT 59.854 34.615 0.00 0.00 45.86 3.99
573 576 8.063038 GGTTTGTTTGTAAAAGTGAAACGTTTT 58.937 29.630 15.89 0.03 46.11 2.43
574 577 9.083813 GTTTGTTTGTAAAAGTGAAACGTTTTC 57.916 29.630 15.89 11.46 46.11 2.29
575 578 8.576936 TTGTTTGTAAAAGTGAAACGTTTTCT 57.423 26.923 15.89 13.49 46.11 2.52
576 579 8.576936 TGTTTGTAAAAGTGAAACGTTTTCTT 57.423 26.923 15.89 18.12 46.11 2.52
577 580 9.032420 TGTTTGTAAAAGTGAAACGTTTTCTTT 57.968 25.926 25.26 25.26 46.11 2.52
578 581 9.296951 GTTTGTAAAAGTGAAACGTTTTCTTTG 57.703 29.630 28.40 0.00 46.11 2.77
579 582 7.569677 TGTAAAAGTGAAACGTTTTCTTTGG 57.430 32.000 28.40 0.00 46.11 3.28
580 583 6.586844 TGTAAAAGTGAAACGTTTTCTTTGGG 59.413 34.615 28.40 0.00 46.11 4.12
581 584 4.794278 AAGTGAAACGTTTTCTTTGGGT 57.206 36.364 15.89 0.00 45.86 4.51
582 585 4.104696 AGTGAAACGTTTTCTTTGGGTG 57.895 40.909 15.89 0.00 45.86 4.61
583 586 2.601314 GTGAAACGTTTTCTTTGGGTGC 59.399 45.455 15.89 0.00 0.00 5.01
584 587 2.198406 GAAACGTTTTCTTTGGGTGCC 58.802 47.619 15.89 0.00 0.00 5.01
585 588 1.187087 AACGTTTTCTTTGGGTGCCA 58.813 45.000 0.00 0.00 0.00 4.92
586 589 0.458260 ACGTTTTCTTTGGGTGCCAC 59.542 50.000 0.00 0.00 30.78 5.01
587 590 0.744281 CGTTTTCTTTGGGTGCCACT 59.256 50.000 0.00 0.00 30.78 4.00
588 591 1.950909 CGTTTTCTTTGGGTGCCACTA 59.049 47.619 0.00 0.00 30.78 2.74
589 592 2.359531 CGTTTTCTTTGGGTGCCACTAA 59.640 45.455 0.00 0.00 30.78 2.24
590 593 3.181485 CGTTTTCTTTGGGTGCCACTAAA 60.181 43.478 0.00 0.00 30.78 1.85
591 594 4.678309 CGTTTTCTTTGGGTGCCACTAAAA 60.678 41.667 0.00 0.00 30.78 1.52
592 595 4.394439 TTTCTTTGGGTGCCACTAAAAC 57.606 40.909 0.00 0.00 30.78 2.43
593 596 3.019799 TCTTTGGGTGCCACTAAAACA 57.980 42.857 0.00 0.00 30.78 2.83
594 597 2.955660 TCTTTGGGTGCCACTAAAACAG 59.044 45.455 0.00 0.00 30.78 3.16
595 598 1.698506 TTGGGTGCCACTAAAACAGG 58.301 50.000 0.00 0.00 30.78 4.00
596 599 0.178975 TGGGTGCCACTAAAACAGGG 60.179 55.000 0.00 0.00 0.00 4.45
597 600 1.532604 GGGTGCCACTAAAACAGGGC 61.533 60.000 0.00 0.00 46.58 5.19
598 601 0.539669 GGTGCCACTAAAACAGGGCT 60.540 55.000 0.00 0.00 46.53 5.19
599 602 0.598065 GTGCCACTAAAACAGGGCTG 59.402 55.000 0.00 0.00 46.53 4.85
600 603 1.178534 TGCCACTAAAACAGGGCTGC 61.179 55.000 0.00 0.00 46.53 5.25
601 604 1.875963 CCACTAAAACAGGGCTGCG 59.124 57.895 0.00 0.00 0.00 5.18
602 605 1.586154 CCACTAAAACAGGGCTGCGG 61.586 60.000 0.00 0.00 0.00 5.69
603 606 1.303317 ACTAAAACAGGGCTGCGGG 60.303 57.895 0.00 0.00 0.00 6.13
604 607 1.303317 CTAAAACAGGGCTGCGGGT 60.303 57.895 0.00 0.00 0.00 5.28
605 608 0.893727 CTAAAACAGGGCTGCGGGTT 60.894 55.000 0.00 0.00 0.00 4.11
606 609 1.175983 TAAAACAGGGCTGCGGGTTG 61.176 55.000 0.00 0.00 0.00 3.77
607 610 2.920076 AAAACAGGGCTGCGGGTTGA 62.920 55.000 0.00 0.00 0.00 3.18
608 611 2.713531 AAACAGGGCTGCGGGTTGAT 62.714 55.000 0.00 0.00 0.00 2.57
609 612 2.361610 CAGGGCTGCGGGTTGATT 60.362 61.111 0.00 0.00 0.00 2.57
610 613 1.978617 CAGGGCTGCGGGTTGATTT 60.979 57.895 0.00 0.00 0.00 2.17
611 614 1.678970 AGGGCTGCGGGTTGATTTC 60.679 57.895 0.00 0.00 0.00 2.17
612 615 2.710902 GGGCTGCGGGTTGATTTCC 61.711 63.158 0.00 0.00 0.00 3.13
613 616 1.678970 GGCTGCGGGTTGATTTCCT 60.679 57.895 0.00 0.00 0.00 3.36
614 617 1.508088 GCTGCGGGTTGATTTCCTG 59.492 57.895 0.00 0.00 34.70 3.86
615 618 1.244019 GCTGCGGGTTGATTTCCTGT 61.244 55.000 0.00 0.00 34.14 4.00
616 619 1.948611 GCTGCGGGTTGATTTCCTGTA 60.949 52.381 0.00 0.00 34.14 2.74
617 620 2.432444 CTGCGGGTTGATTTCCTGTAA 58.568 47.619 0.00 0.00 34.14 2.41
618 621 2.817258 CTGCGGGTTGATTTCCTGTAAA 59.183 45.455 0.00 0.00 34.14 2.01
619 622 2.554893 TGCGGGTTGATTTCCTGTAAAC 59.445 45.455 0.00 0.00 34.14 2.01
620 623 2.094906 GCGGGTTGATTTCCTGTAAACC 60.095 50.000 0.00 0.00 39.67 3.27
621 624 2.160813 CGGGTTGATTTCCTGTAAACCG 59.839 50.000 0.00 0.00 45.46 4.44
622 625 3.414269 GGGTTGATTTCCTGTAAACCGA 58.586 45.455 0.00 0.00 41.00 4.69
623 626 3.439129 GGGTTGATTTCCTGTAAACCGAG 59.561 47.826 0.00 0.00 41.00 4.63
624 627 3.439129 GGTTGATTTCCTGTAAACCGAGG 59.561 47.826 0.00 0.00 31.69 4.63
625 628 3.343941 TGATTTCCTGTAAACCGAGGG 57.656 47.619 0.00 0.00 0.00 4.30
626 629 2.026636 TGATTTCCTGTAAACCGAGGGG 60.027 50.000 0.00 0.00 40.11 4.79
627 630 0.037160 TTTCCTGTAAACCGAGGGGC 59.963 55.000 0.00 0.00 36.48 5.80
628 631 0.838987 TTCCTGTAAACCGAGGGGCT 60.839 55.000 0.00 0.00 36.48 5.19
629 632 0.838987 TCCTGTAAACCGAGGGGCTT 60.839 55.000 0.00 0.00 36.48 4.35
630 633 0.037734 CCTGTAAACCGAGGGGCTTT 59.962 55.000 0.00 0.00 36.48 3.51
631 634 1.546998 CCTGTAAACCGAGGGGCTTTT 60.547 52.381 0.00 0.00 36.48 2.27
632 635 2.235891 CTGTAAACCGAGGGGCTTTTT 58.764 47.619 0.00 0.00 36.48 1.94
651 654 5.470845 TTTTTGCAAAACAACCATAACGG 57.529 34.783 23.79 0.00 38.23 4.44
652 655 4.386867 TTTGCAAAACAACCATAACGGA 57.613 36.364 10.02 0.00 38.23 4.69
653 656 3.357166 TGCAAAACAACCATAACGGAC 57.643 42.857 0.00 0.00 38.63 4.79
654 657 2.287069 TGCAAAACAACCATAACGGACG 60.287 45.455 0.00 0.00 38.63 4.79
655 658 2.031857 GCAAAACAACCATAACGGACGA 60.032 45.455 0.00 0.00 38.63 4.20
656 659 3.365565 GCAAAACAACCATAACGGACGAT 60.366 43.478 0.00 0.00 38.63 3.73
657 660 4.142859 GCAAAACAACCATAACGGACGATA 60.143 41.667 0.00 0.00 38.63 2.92
658 661 5.617308 GCAAAACAACCATAACGGACGATAA 60.617 40.000 0.00 0.00 38.63 1.75
659 662 6.372185 CAAAACAACCATAACGGACGATAAA 58.628 36.000 0.00 0.00 38.63 1.40
660 663 5.789710 AACAACCATAACGGACGATAAAG 57.210 39.130 0.00 0.00 38.63 1.85
661 664 5.075858 ACAACCATAACGGACGATAAAGA 57.924 39.130 0.00 0.00 38.63 2.52
662 665 5.667466 ACAACCATAACGGACGATAAAGAT 58.333 37.500 0.00 0.00 38.63 2.40
663 666 6.808829 ACAACCATAACGGACGATAAAGATA 58.191 36.000 0.00 0.00 38.63 1.98
664 667 7.267128 ACAACCATAACGGACGATAAAGATAA 58.733 34.615 0.00 0.00 38.63 1.75
665 668 7.765360 ACAACCATAACGGACGATAAAGATAAA 59.235 33.333 0.00 0.00 38.63 1.40
666 669 7.941795 ACCATAACGGACGATAAAGATAAAG 57.058 36.000 0.00 0.00 38.63 1.85
667 670 7.719483 ACCATAACGGACGATAAAGATAAAGA 58.281 34.615 0.00 0.00 38.63 2.52
668 671 8.365647 ACCATAACGGACGATAAAGATAAAGAT 58.634 33.333 0.00 0.00 38.63 2.40
669 672 9.204570 CCATAACGGACGATAAAGATAAAGATT 57.795 33.333 0.00 0.00 36.56 2.40
715 718 9.618890 AAAGATAAAGATAAAGATGTAGCTGCA 57.381 29.630 7.05 7.05 0.00 4.41
716 719 8.600449 AGATAAAGATAAAGATGTAGCTGCAC 57.400 34.615 6.66 1.31 0.00 4.57
717 720 7.659390 AGATAAAGATAAAGATGTAGCTGCACC 59.341 37.037 6.66 0.00 0.00 5.01
718 721 4.760530 AGATAAAGATGTAGCTGCACCA 57.239 40.909 6.66 0.00 0.00 4.17
719 722 5.301835 AGATAAAGATGTAGCTGCACCAT 57.698 39.130 6.66 2.85 0.00 3.55
720 723 5.061853 AGATAAAGATGTAGCTGCACCATG 58.938 41.667 6.66 0.00 0.00 3.66
721 724 1.386533 AAGATGTAGCTGCACCATGC 58.613 50.000 6.66 0.00 45.29 4.06
730 733 2.674033 GCACCATGCACTGCCTGA 60.674 61.111 7.80 0.00 44.26 3.86
731 734 2.986306 GCACCATGCACTGCCTGAC 61.986 63.158 7.80 0.00 44.26 3.51
732 735 1.303074 CACCATGCACTGCCTGACT 60.303 57.895 7.80 0.00 0.00 3.41
733 736 0.036105 CACCATGCACTGCCTGACTA 60.036 55.000 7.80 0.00 0.00 2.59
734 737 0.692476 ACCATGCACTGCCTGACTAA 59.308 50.000 7.80 0.00 0.00 2.24
735 738 1.073763 ACCATGCACTGCCTGACTAAA 59.926 47.619 7.80 0.00 0.00 1.85
736 739 2.291153 ACCATGCACTGCCTGACTAAAT 60.291 45.455 7.80 0.00 0.00 1.40
737 740 2.756760 CCATGCACTGCCTGACTAAATT 59.243 45.455 7.80 0.00 0.00 1.82
738 741 3.181493 CCATGCACTGCCTGACTAAATTC 60.181 47.826 7.80 0.00 0.00 2.17
739 742 3.423539 TGCACTGCCTGACTAAATTCT 57.576 42.857 0.00 0.00 0.00 2.40
740 743 4.551702 TGCACTGCCTGACTAAATTCTA 57.448 40.909 0.00 0.00 0.00 2.10
741 744 4.905429 TGCACTGCCTGACTAAATTCTAA 58.095 39.130 0.00 0.00 0.00 2.10
742 745 4.695455 TGCACTGCCTGACTAAATTCTAAC 59.305 41.667 0.00 0.00 0.00 2.34
743 746 4.695455 GCACTGCCTGACTAAATTCTAACA 59.305 41.667 0.00 0.00 0.00 2.41
744 747 5.181245 GCACTGCCTGACTAAATTCTAACAA 59.819 40.000 0.00 0.00 0.00 2.83
745 748 6.293955 GCACTGCCTGACTAAATTCTAACAAA 60.294 38.462 0.00 0.00 0.00 2.83
746 749 7.575720 GCACTGCCTGACTAAATTCTAACAAAT 60.576 37.037 0.00 0.00 0.00 2.32
747 750 8.299570 CACTGCCTGACTAAATTCTAACAAATT 58.700 33.333 0.00 0.00 0.00 1.82
748 751 8.860088 ACTGCCTGACTAAATTCTAACAAATTT 58.140 29.630 0.00 0.00 40.82 1.82
809 812 1.049251 GCGGTATGCAAACAAACACG 58.951 50.000 0.00 0.00 45.45 4.49
810 813 1.334239 GCGGTATGCAAACAAACACGA 60.334 47.619 0.00 0.00 45.45 4.35
811 814 2.855187 GCGGTATGCAAACAAACACGAA 60.855 45.455 0.00 0.00 45.45 3.85
812 815 2.717011 CGGTATGCAAACAAACACGAAC 59.283 45.455 0.00 0.00 0.00 3.95
813 816 3.696898 GGTATGCAAACAAACACGAACA 58.303 40.909 0.00 0.00 0.00 3.18
814 817 3.484285 GGTATGCAAACAAACACGAACAC 59.516 43.478 0.00 0.00 0.00 3.32
815 818 1.983972 TGCAAACAAACACGAACACC 58.016 45.000 0.00 0.00 0.00 4.16
816 819 1.273688 GCAAACAAACACGAACACCC 58.726 50.000 0.00 0.00 0.00 4.61
817 820 1.402984 GCAAACAAACACGAACACCCA 60.403 47.619 0.00 0.00 0.00 4.51
818 821 2.255316 CAAACAAACACGAACACCCAC 58.745 47.619 0.00 0.00 0.00 4.61
819 822 1.828979 AACAAACACGAACACCCACT 58.171 45.000 0.00 0.00 0.00 4.00
820 823 1.375551 ACAAACACGAACACCCACTC 58.624 50.000 0.00 0.00 0.00 3.51
821 824 1.339247 ACAAACACGAACACCCACTCA 60.339 47.619 0.00 0.00 0.00 3.41
822 825 1.063469 CAAACACGAACACCCACTCAC 59.937 52.381 0.00 0.00 0.00 3.51
823 826 0.463116 AACACGAACACCCACTCACC 60.463 55.000 0.00 0.00 0.00 4.02
824 827 1.145156 CACGAACACCCACTCACCA 59.855 57.895 0.00 0.00 0.00 4.17
825 828 1.145377 ACGAACACCCACTCACCAC 59.855 57.895 0.00 0.00 0.00 4.16
826 829 1.597027 CGAACACCCACTCACCACC 60.597 63.158 0.00 0.00 0.00 4.61
827 830 1.597027 GAACACCCACTCACCACCG 60.597 63.158 0.00 0.00 0.00 4.94
828 831 2.035237 GAACACCCACTCACCACCGA 62.035 60.000 0.00 0.00 0.00 4.69
829 832 2.030562 CACCCACTCACCACCGAC 59.969 66.667 0.00 0.00 0.00 4.79
830 833 2.445085 ACCCACTCACCACCGACA 60.445 61.111 0.00 0.00 0.00 4.35
831 834 2.067605 ACCCACTCACCACCGACAA 61.068 57.895 0.00 0.00 0.00 3.18
832 835 1.597027 CCCACTCACCACCGACAAC 60.597 63.158 0.00 0.00 0.00 3.32
833 836 1.597027 CCACTCACCACCGACAACC 60.597 63.158 0.00 0.00 0.00 3.77
834 837 1.145156 CACTCACCACCGACAACCA 59.855 57.895 0.00 0.00 0.00 3.67
835 838 0.880278 CACTCACCACCGACAACCAG 60.880 60.000 0.00 0.00 0.00 4.00
836 839 1.046472 ACTCACCACCGACAACCAGA 61.046 55.000 0.00 0.00 0.00 3.86
837 840 0.105964 CTCACCACCGACAACCAGAA 59.894 55.000 0.00 0.00 0.00 3.02
838 841 0.179067 TCACCACCGACAACCAGAAC 60.179 55.000 0.00 0.00 0.00 3.01
839 842 0.462937 CACCACCGACAACCAGAACA 60.463 55.000 0.00 0.00 0.00 3.18
840 843 0.253610 ACCACCGACAACCAGAACAA 59.746 50.000 0.00 0.00 0.00 2.83
841 844 0.944386 CCACCGACAACCAGAACAAG 59.056 55.000 0.00 0.00 0.00 3.16
842 845 1.474320 CCACCGACAACCAGAACAAGA 60.474 52.381 0.00 0.00 0.00 3.02
843 846 2.285083 CACCGACAACCAGAACAAGAA 58.715 47.619 0.00 0.00 0.00 2.52
844 847 2.680841 CACCGACAACCAGAACAAGAAA 59.319 45.455 0.00 0.00 0.00 2.52
845 848 3.127895 CACCGACAACCAGAACAAGAAAA 59.872 43.478 0.00 0.00 0.00 2.29
846 849 3.759618 ACCGACAACCAGAACAAGAAAAA 59.240 39.130 0.00 0.00 0.00 1.94
873 876 4.145365 AGGCACTAAAATATACACCGCA 57.855 40.909 0.00 0.00 36.02 5.69
874 877 4.714632 AGGCACTAAAATATACACCGCAT 58.285 39.130 0.00 0.00 36.02 4.73
875 878 4.755123 AGGCACTAAAATATACACCGCATC 59.245 41.667 0.00 0.00 36.02 3.91
876 879 4.083484 GGCACTAAAATATACACCGCATCC 60.083 45.833 0.00 0.00 0.00 3.51
877 880 4.755123 GCACTAAAATATACACCGCATCCT 59.245 41.667 0.00 0.00 0.00 3.24
878 881 5.929992 GCACTAAAATATACACCGCATCCTA 59.070 40.000 0.00 0.00 0.00 2.94
879 882 6.425721 GCACTAAAATATACACCGCATCCTAA 59.574 38.462 0.00 0.00 0.00 2.69
880 883 7.041644 GCACTAAAATATACACCGCATCCTAAA 60.042 37.037 0.00 0.00 0.00 1.85
881 884 8.280497 CACTAAAATATACACCGCATCCTAAAC 58.720 37.037 0.00 0.00 0.00 2.01
882 885 7.988599 ACTAAAATATACACCGCATCCTAAACA 59.011 33.333 0.00 0.00 0.00 2.83
883 886 6.861065 AAATATACACCGCATCCTAAACAG 57.139 37.500 0.00 0.00 0.00 3.16
884 887 2.018542 TACACCGCATCCTAAACAGC 57.981 50.000 0.00 0.00 0.00 4.40
885 888 0.036164 ACACCGCATCCTAAACAGCA 59.964 50.000 0.00 0.00 0.00 4.41
886 889 0.729116 CACCGCATCCTAAACAGCAG 59.271 55.000 0.00 0.00 0.00 4.24
887 890 1.026718 ACCGCATCCTAAACAGCAGC 61.027 55.000 0.00 0.00 0.00 5.25
888 891 0.745845 CCGCATCCTAAACAGCAGCT 60.746 55.000 0.00 0.00 0.00 4.24
889 892 1.473257 CCGCATCCTAAACAGCAGCTA 60.473 52.381 0.00 0.00 0.00 3.32
890 893 1.594862 CGCATCCTAAACAGCAGCTAC 59.405 52.381 0.00 0.00 0.00 3.58
891 894 1.594862 GCATCCTAAACAGCAGCTACG 59.405 52.381 0.00 0.00 0.00 3.51
892 895 2.205074 CATCCTAAACAGCAGCTACGG 58.795 52.381 0.00 0.00 0.00 4.02
893 896 0.535335 TCCTAAACAGCAGCTACGGG 59.465 55.000 0.00 0.00 0.00 5.28
894 897 1.090052 CCTAAACAGCAGCTACGGGC 61.090 60.000 0.00 0.00 42.19 6.13
895 898 0.391130 CTAAACAGCAGCTACGGGCA 60.391 55.000 0.00 0.00 44.79 5.36
896 899 0.251916 TAAACAGCAGCTACGGGCAT 59.748 50.000 0.00 0.00 44.79 4.40
897 900 1.026718 AAACAGCAGCTACGGGCATC 61.027 55.000 0.00 0.00 44.79 3.91
898 901 2.184020 AACAGCAGCTACGGGCATCA 62.184 55.000 0.00 0.00 44.79 3.07
899 902 1.450134 CAGCAGCTACGGGCATCAA 60.450 57.895 0.00 0.00 44.79 2.57
900 903 1.450312 AGCAGCTACGGGCATCAAC 60.450 57.895 0.00 0.00 44.79 3.18
901 904 1.745115 GCAGCTACGGGCATCAACA 60.745 57.895 5.51 0.00 44.79 3.33
902 905 1.709147 GCAGCTACGGGCATCAACAG 61.709 60.000 5.51 0.00 44.79 3.16
903 906 0.391661 CAGCTACGGGCATCAACAGT 60.392 55.000 5.51 0.00 44.79 3.55
904 907 0.391661 AGCTACGGGCATCAACAGTG 60.392 55.000 5.51 0.00 44.79 3.66
905 908 1.369091 GCTACGGGCATCAACAGTGG 61.369 60.000 0.00 0.00 41.35 4.00
906 909 0.036388 CTACGGGCATCAACAGTGGT 60.036 55.000 0.00 0.00 0.00 4.16
907 910 1.206132 CTACGGGCATCAACAGTGGTA 59.794 52.381 0.00 0.00 0.00 3.25
908 911 0.036388 ACGGGCATCAACAGTGGTAG 60.036 55.000 0.00 0.00 0.00 3.18
909 912 0.036388 CGGGCATCAACAGTGGTAGT 60.036 55.000 0.00 0.00 0.00 2.73
910 913 1.206132 CGGGCATCAACAGTGGTAGTA 59.794 52.381 0.00 0.00 0.00 1.82
911 914 2.158957 CGGGCATCAACAGTGGTAGTAT 60.159 50.000 0.00 0.00 0.00 2.12
912 915 3.069016 CGGGCATCAACAGTGGTAGTATA 59.931 47.826 0.00 0.00 0.00 1.47
913 916 4.262463 CGGGCATCAACAGTGGTAGTATAT 60.262 45.833 0.00 0.00 0.00 0.86
914 917 5.047590 CGGGCATCAACAGTGGTAGTATATA 60.048 44.000 0.00 0.00 0.00 0.86
915 918 6.517697 CGGGCATCAACAGTGGTAGTATATAA 60.518 42.308 0.00 0.00 0.00 0.98
916 919 7.394816 GGGCATCAACAGTGGTAGTATATAAT 58.605 38.462 0.00 0.00 0.00 1.28
917 920 8.537016 GGGCATCAACAGTGGTAGTATATAATA 58.463 37.037 0.00 0.00 0.00 0.98
928 931 9.948747 GTGGTAGTATATAATATAAGGGAGGGT 57.051 37.037 0.00 0.00 0.00 4.34
929 932 9.947189 TGGTAGTATATAATATAAGGGAGGGTG 57.053 37.037 0.00 0.00 0.00 4.61
930 933 9.948747 GGTAGTATATAATATAAGGGAGGGTGT 57.051 37.037 0.00 0.00 0.00 4.16
933 936 9.268282 AGTATATAATATAAGGGAGGGTGTGTG 57.732 37.037 0.00 0.00 0.00 3.82
946 949 1.620822 GTGTGTGGATGCCTTTCCTT 58.379 50.000 0.00 0.00 36.68 3.36
991 994 0.921896 TACCCCGTAGAGCAGGTAGT 59.078 55.000 0.00 0.00 33.70 2.73
998 1001 2.288458 CGTAGAGCAGGTAGTAGAGCAC 59.712 54.545 0.00 0.00 0.00 4.40
1022 1025 2.401766 CCACGCCCAGCTCACAATC 61.402 63.158 0.00 0.00 0.00 2.67
1024 1027 2.825836 CGCCCAGCTCACAATCCC 60.826 66.667 0.00 0.00 0.00 3.85
1038 1041 0.554792 AATCCCTTCCCCAGATGCTG 59.445 55.000 0.00 0.00 0.00 4.41
1059 1062 2.401967 GCTGCCAGCAATCCTACTG 58.598 57.895 12.82 0.00 41.89 2.74
1071 1074 2.672961 TCCTACTGGTCATCTTTGCG 57.327 50.000 0.00 0.00 34.23 4.85
1076 1079 2.746277 GGTCATCTTTGCGGCCGT 60.746 61.111 28.70 1.40 0.00 5.68
1139 1142 0.577269 GATAAGTGCGGCGACATCAC 59.423 55.000 12.98 9.42 34.71 3.06
1262 1265 7.816513 TGACAACAGAACAATCAATCTAGAGAG 59.183 37.037 0.00 0.00 0.00 3.20
1419 1422 2.124996 TCCAAGGGAGGTGAGGGG 59.875 66.667 0.00 0.00 0.00 4.79
1462 1465 4.024048 AGCATATAAATTTCGGCAACTCGG 60.024 41.667 0.00 0.00 0.00 4.63
1593 1596 5.917447 CACAATATCAGAGAGACGGTACATG 59.083 44.000 0.00 0.00 0.00 3.21
1597 1600 1.745653 CAGAGAGACGGTACATGCAGA 59.254 52.381 0.00 0.00 0.00 4.26
1657 1660 0.321122 CTGCTGTGAGACCACCCTTC 60.321 60.000 0.00 0.00 42.53 3.46
1672 1675 1.078214 CTTCTGCATCCCGGCAAGA 60.078 57.895 0.00 0.00 44.40 3.02
1691 1694 1.859080 GAGTTTGACCGTGTCTGTCAC 59.141 52.381 5.77 0.00 42.13 3.67
1692 1695 1.480954 AGTTTGACCGTGTCTGTCACT 59.519 47.619 3.71 0.00 42.13 3.41
1719 1725 2.932234 CGACGAGTGGTGGGAGCTT 61.932 63.158 0.00 0.00 0.00 3.74
1743 1749 1.593750 CTGCTCCTACGCCATGCTC 60.594 63.158 0.00 0.00 0.00 4.26
1851 1861 2.125147 CTGGATTTCGCTGCCGGA 60.125 61.111 5.05 0.00 34.56 5.14
1856 1866 0.451783 GATTTCGCTGCCGGAAATGT 59.548 50.000 16.65 0.00 35.20 2.71
1965 1987 1.227380 CTATGTCTGCCGGTGCTCC 60.227 63.158 1.90 0.00 38.71 4.70
1987 2009 0.808755 CAATTACACCGGCAACCCTC 59.191 55.000 0.00 0.00 0.00 4.30
2191 2280 3.934579 GCAAATTTGGAATGAAAGCGGAT 59.065 39.130 19.47 0.00 0.00 4.18
2505 2664 7.621428 ATGTATATCAACTTGCTGCATATCC 57.379 36.000 1.84 0.00 0.00 2.59
2506 2665 5.939883 TGTATATCAACTTGCTGCATATCCC 59.060 40.000 1.84 0.00 0.00 3.85
2507 2666 2.057137 TCAACTTGCTGCATATCCCC 57.943 50.000 1.84 0.00 0.00 4.81
2508 2667 1.035139 CAACTTGCTGCATATCCCCC 58.965 55.000 1.84 0.00 0.00 5.40
2592 2752 4.439289 GGAACTGCATGCTTTTACATCTCC 60.439 45.833 20.33 7.86 0.00 3.71
2730 3902 7.983484 AGGCTTTCCAAATTATATTTCAGCAAG 59.017 33.333 0.00 0.00 33.74 4.01
2733 3905 9.874205 CTTTCCAAATTATATTTCAGCAAGGAA 57.126 29.630 0.00 0.00 0.00 3.36
2746 3918 5.181009 TCAGCAAGGAAAGAGTACATGATG 58.819 41.667 0.00 0.00 0.00 3.07
2753 3925 5.182001 AGGAAAGAGTACATGATGTTGTTGC 59.818 40.000 2.29 0.00 0.00 4.17
2802 4009 4.525912 ACCACTTGCCATTCTTGATTTC 57.474 40.909 0.00 0.00 0.00 2.17
3313 4533 2.125461 GCTGTTGCCTTGAAGTTGAC 57.875 50.000 0.00 0.00 0.00 3.18
3371 4592 1.667724 GCCTCCATGACATTCTTCACG 59.332 52.381 0.00 0.00 0.00 4.35
3484 4705 4.927425 GCAAACACTAGAATTCTACACGGA 59.073 41.667 11.24 0.00 0.00 4.69
3619 4840 5.045651 TGGCGACATGAATTATATGGATCCT 60.046 40.000 14.23 0.89 33.40 3.24
4193 5416 1.346395 ACATTGCACACGGGTCTTCTA 59.654 47.619 0.00 0.00 0.00 2.10
4215 5438 1.152963 AAACTTGTGGTCCAGCGCT 60.153 52.632 2.64 2.64 0.00 5.92
4219 5442 2.121564 CTTGTGGTCCAGCGCTGTTG 62.122 60.000 33.75 20.76 0.00 3.33
4221 5444 2.186826 GTGGTCCAGCGCTGTTGTT 61.187 57.895 33.75 0.00 0.00 2.83
4223 5446 1.598130 GGTCCAGCGCTGTTGTTCT 60.598 57.895 33.75 0.00 0.00 3.01
4224 5447 1.569479 GGTCCAGCGCTGTTGTTCTC 61.569 60.000 33.75 15.58 0.00 2.87
4225 5448 0.601311 GTCCAGCGCTGTTGTTCTCT 60.601 55.000 33.75 0.00 0.00 3.10
4226 5449 0.966179 TCCAGCGCTGTTGTTCTCTA 59.034 50.000 33.75 6.61 0.00 2.43
4227 5450 1.067565 TCCAGCGCTGTTGTTCTCTAG 60.068 52.381 33.75 15.69 0.00 2.43
4228 5451 1.067565 CCAGCGCTGTTGTTCTCTAGA 60.068 52.381 33.75 0.00 0.00 2.43
4509 5763 1.215423 ACTTGGACTTGACTTGGCCTT 59.785 47.619 3.32 0.00 0.00 4.35
4516 5770 0.884704 TTGACTTGGCCTTGTCGAGC 60.885 55.000 18.81 0.00 36.10 5.03
4522 5776 3.567797 GCCTTGTCGAGCGCATCC 61.568 66.667 11.47 0.00 0.00 3.51
4618 5872 5.534207 TTGCACATCTTCCTCATTGTTTT 57.466 34.783 0.00 0.00 0.00 2.43
4628 5883 4.692228 TCCTCATTGTTTTGTTTCTTGCC 58.308 39.130 0.00 0.00 0.00 4.52
4629 5884 4.161189 TCCTCATTGTTTTGTTTCTTGCCA 59.839 37.500 0.00 0.00 0.00 4.92
4649 5904 2.287393 TTGCGCTTGCTATCGTTCTA 57.713 45.000 9.73 0.00 40.12 2.10
4687 5942 3.192922 GCATGCCCGTACGTCCAC 61.193 66.667 15.21 0.84 0.00 4.02
4765 6020 2.749621 CAGCCTCCACCATTAACAACTC 59.250 50.000 0.00 0.00 0.00 3.01
4829 6084 4.676924 GCTTAGTAGTTTTTGCAACTGCTG 59.323 41.667 15.40 3.79 41.97 4.41
4848 6103 3.872240 GCTGTGAGGCAGGGTAAATACAA 60.872 47.826 0.00 0.00 45.14 2.41
4871 6126 6.018433 ACTACAGGAAATGCCATAAAGGAT 57.982 37.500 0.00 0.00 41.22 3.24
4905 6160 8.533657 TCTGCAAATAATGAACAAGGATGAATT 58.466 29.630 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
547 550 6.693761 ACGTTTCACTTTTACAAACAAACC 57.306 33.333 0.00 0.00 31.51 3.27
548 551 8.975166 AAAACGTTTCACTTTTACAAACAAAC 57.025 26.923 15.01 0.00 31.51 2.93
549 552 9.032420 AGAAAACGTTTCACTTTTACAAACAAA 57.968 25.926 15.01 0.00 31.51 2.83
550 553 8.576936 AGAAAACGTTTCACTTTTACAAACAA 57.423 26.923 15.01 0.00 31.51 2.83
551 554 8.576936 AAGAAAACGTTTCACTTTTACAAACA 57.423 26.923 15.01 0.00 31.51 2.83
552 555 9.296951 CAAAGAAAACGTTTCACTTTTACAAAC 57.703 29.630 27.62 1.45 30.37 2.93
553 556 8.488764 CCAAAGAAAACGTTTCACTTTTACAAA 58.511 29.630 27.62 0.00 30.37 2.83
554 557 7.116519 CCCAAAGAAAACGTTTCACTTTTACAA 59.883 33.333 27.62 0.00 30.37 2.41
555 558 6.586844 CCCAAAGAAAACGTTTCACTTTTACA 59.413 34.615 27.62 0.00 30.37 2.41
556 559 6.587226 ACCCAAAGAAAACGTTTCACTTTTAC 59.413 34.615 27.62 10.89 30.37 2.01
557 560 6.586844 CACCCAAAGAAAACGTTTCACTTTTA 59.413 34.615 27.62 0.00 30.37 1.52
558 561 5.407084 CACCCAAAGAAAACGTTTCACTTTT 59.593 36.000 27.62 18.35 30.37 2.27
559 562 4.926832 CACCCAAAGAAAACGTTTCACTTT 59.073 37.500 25.97 25.97 31.75 2.66
560 563 4.490743 CACCCAAAGAAAACGTTTCACTT 58.509 39.130 15.01 18.30 0.00 3.16
561 564 3.674955 GCACCCAAAGAAAACGTTTCACT 60.675 43.478 15.01 13.62 0.00 3.41
562 565 2.601314 GCACCCAAAGAAAACGTTTCAC 59.399 45.455 15.01 11.55 0.00 3.18
563 566 2.417515 GGCACCCAAAGAAAACGTTTCA 60.418 45.455 15.01 0.00 0.00 2.69
564 567 2.198406 GGCACCCAAAGAAAACGTTTC 58.802 47.619 15.01 8.08 0.00 2.78
565 568 1.550976 TGGCACCCAAAGAAAACGTTT 59.449 42.857 7.96 7.96 0.00 3.60
566 569 1.134936 GTGGCACCCAAAGAAAACGTT 60.135 47.619 6.29 0.00 34.18 3.99
567 570 0.458260 GTGGCACCCAAAGAAAACGT 59.542 50.000 6.29 0.00 34.18 3.99
568 571 0.744281 AGTGGCACCCAAAGAAAACG 59.256 50.000 15.27 0.00 34.18 3.60
569 572 4.394439 TTTAGTGGCACCCAAAGAAAAC 57.606 40.909 15.27 0.00 34.18 2.43
570 573 4.223032 TGTTTTAGTGGCACCCAAAGAAAA 59.777 37.500 15.27 8.68 34.18 2.29
571 574 3.769844 TGTTTTAGTGGCACCCAAAGAAA 59.230 39.130 15.27 4.04 34.18 2.52
572 575 3.366396 TGTTTTAGTGGCACCCAAAGAA 58.634 40.909 15.27 4.76 34.18 2.52
573 576 2.955660 CTGTTTTAGTGGCACCCAAAGA 59.044 45.455 15.27 10.93 34.18 2.52
574 577 2.035832 CCTGTTTTAGTGGCACCCAAAG 59.964 50.000 15.27 4.93 34.18 2.77
575 578 2.035632 CCTGTTTTAGTGGCACCCAAA 58.964 47.619 15.27 12.20 34.18 3.28
576 579 1.698506 CCTGTTTTAGTGGCACCCAA 58.301 50.000 15.27 6.07 34.18 4.12
577 580 0.178975 CCCTGTTTTAGTGGCACCCA 60.179 55.000 15.27 0.00 0.00 4.51
578 581 1.532604 GCCCTGTTTTAGTGGCACCC 61.533 60.000 15.27 0.00 40.45 4.61
579 582 0.539669 AGCCCTGTTTTAGTGGCACC 60.540 55.000 15.27 0.00 42.10 5.01
580 583 0.598065 CAGCCCTGTTTTAGTGGCAC 59.402 55.000 10.29 10.29 42.10 5.01
581 584 1.178534 GCAGCCCTGTTTTAGTGGCA 61.179 55.000 1.86 0.00 42.10 4.92
582 585 1.586541 GCAGCCCTGTTTTAGTGGC 59.413 57.895 0.00 0.00 40.81 5.01
583 586 1.586154 CCGCAGCCCTGTTTTAGTGG 61.586 60.000 0.00 0.00 0.00 4.00
584 587 1.586154 CCCGCAGCCCTGTTTTAGTG 61.586 60.000 0.00 0.00 0.00 2.74
585 588 1.303317 CCCGCAGCCCTGTTTTAGT 60.303 57.895 0.00 0.00 0.00 2.24
586 589 0.893727 AACCCGCAGCCCTGTTTTAG 60.894 55.000 0.00 0.00 0.00 1.85
587 590 1.151908 AACCCGCAGCCCTGTTTTA 59.848 52.632 0.00 0.00 0.00 1.52
588 591 2.123468 AACCCGCAGCCCTGTTTT 60.123 55.556 0.00 0.00 0.00 2.43
589 592 2.713531 ATCAACCCGCAGCCCTGTTT 62.714 55.000 0.00 0.00 0.00 2.83
590 593 2.713531 AATCAACCCGCAGCCCTGTT 62.714 55.000 0.00 0.00 0.00 3.16
591 594 2.713531 AAATCAACCCGCAGCCCTGT 62.714 55.000 0.00 0.00 0.00 4.00
592 595 1.937546 GAAATCAACCCGCAGCCCTG 61.938 60.000 0.00 0.00 0.00 4.45
593 596 1.678970 GAAATCAACCCGCAGCCCT 60.679 57.895 0.00 0.00 0.00 5.19
594 597 2.710902 GGAAATCAACCCGCAGCCC 61.711 63.158 0.00 0.00 0.00 5.19
595 598 1.678970 AGGAAATCAACCCGCAGCC 60.679 57.895 0.00 0.00 0.00 4.85
596 599 1.244019 ACAGGAAATCAACCCGCAGC 61.244 55.000 0.00 0.00 0.00 5.25
597 600 2.107950 TACAGGAAATCAACCCGCAG 57.892 50.000 0.00 0.00 0.00 5.18
598 601 2.554893 GTTTACAGGAAATCAACCCGCA 59.445 45.455 0.00 0.00 0.00 5.69
599 602 2.094906 GGTTTACAGGAAATCAACCCGC 60.095 50.000 0.00 0.00 32.20 6.13
600 603 2.160813 CGGTTTACAGGAAATCAACCCG 59.839 50.000 0.00 0.00 34.50 5.28
601 604 3.414269 TCGGTTTACAGGAAATCAACCC 58.586 45.455 0.00 0.00 34.50 4.11
602 605 3.439129 CCTCGGTTTACAGGAAATCAACC 59.561 47.826 0.00 0.00 34.64 3.77
603 606 3.439129 CCCTCGGTTTACAGGAAATCAAC 59.561 47.826 0.00 0.00 30.32 3.18
604 607 3.560453 CCCCTCGGTTTACAGGAAATCAA 60.560 47.826 0.00 0.00 30.32 2.57
605 608 2.026636 CCCCTCGGTTTACAGGAAATCA 60.027 50.000 0.00 0.00 30.32 2.57
606 609 2.640184 CCCCTCGGTTTACAGGAAATC 58.360 52.381 0.00 0.00 30.32 2.17
607 610 1.340697 GCCCCTCGGTTTACAGGAAAT 60.341 52.381 0.00 0.00 30.32 2.17
608 611 0.037160 GCCCCTCGGTTTACAGGAAA 59.963 55.000 0.00 0.00 30.32 3.13
609 612 0.838987 AGCCCCTCGGTTTACAGGAA 60.839 55.000 0.00 0.00 30.32 3.36
610 613 0.838987 AAGCCCCTCGGTTTACAGGA 60.839 55.000 0.00 0.00 29.39 3.86
611 614 0.037734 AAAGCCCCTCGGTTTACAGG 59.962 55.000 0.00 0.00 40.36 4.00
612 615 1.905637 AAAAGCCCCTCGGTTTACAG 58.094 50.000 0.00 0.00 41.28 2.74
613 616 2.368311 AAAAAGCCCCTCGGTTTACA 57.632 45.000 0.00 0.00 41.28 2.41
629 632 5.063564 GTCCGTTATGGTTGTTTTGCAAAAA 59.936 36.000 25.40 10.76 39.03 1.94
630 633 4.567159 GTCCGTTATGGTTGTTTTGCAAAA 59.433 37.500 20.46 20.46 39.03 2.44
631 634 4.113354 GTCCGTTATGGTTGTTTTGCAAA 58.887 39.130 8.05 8.05 39.03 3.68
632 635 3.707793 GTCCGTTATGGTTGTTTTGCAA 58.292 40.909 0.00 0.00 39.52 4.08
633 636 2.287069 CGTCCGTTATGGTTGTTTTGCA 60.287 45.455 0.00 0.00 39.52 4.08
634 637 2.031857 TCGTCCGTTATGGTTGTTTTGC 60.032 45.455 0.00 0.00 39.52 3.68
635 638 3.881780 TCGTCCGTTATGGTTGTTTTG 57.118 42.857 0.00 0.00 39.52 2.44
636 639 6.427547 TCTTTATCGTCCGTTATGGTTGTTTT 59.572 34.615 0.00 0.00 39.52 2.43
637 640 5.933463 TCTTTATCGTCCGTTATGGTTGTTT 59.067 36.000 0.00 0.00 39.52 2.83
638 641 5.481105 TCTTTATCGTCCGTTATGGTTGTT 58.519 37.500 0.00 0.00 39.52 2.83
639 642 5.075858 TCTTTATCGTCCGTTATGGTTGT 57.924 39.130 0.00 0.00 39.52 3.32
640 643 7.703298 TTATCTTTATCGTCCGTTATGGTTG 57.297 36.000 0.00 0.00 39.52 3.77
641 644 8.199449 TCTTTATCTTTATCGTCCGTTATGGTT 58.801 33.333 0.00 0.00 39.52 3.67
642 645 7.719483 TCTTTATCTTTATCGTCCGTTATGGT 58.281 34.615 0.00 0.00 39.52 3.55
643 646 8.758633 ATCTTTATCTTTATCGTCCGTTATGG 57.241 34.615 0.00 0.00 40.09 2.74
689 692 9.618890 TGCAGCTACATCTTTATCTTTATCTTT 57.381 29.630 0.00 0.00 0.00 2.52
690 693 9.050601 GTGCAGCTACATCTTTATCTTTATCTT 57.949 33.333 0.00 0.00 0.00 2.40
691 694 7.659390 GGTGCAGCTACATCTTTATCTTTATCT 59.341 37.037 9.07 0.00 0.00 1.98
692 695 7.442364 TGGTGCAGCTACATCTTTATCTTTATC 59.558 37.037 18.08 0.00 0.00 1.75
693 696 7.282585 TGGTGCAGCTACATCTTTATCTTTAT 58.717 34.615 18.08 0.00 0.00 1.40
694 697 6.649155 TGGTGCAGCTACATCTTTATCTTTA 58.351 36.000 18.08 0.00 0.00 1.85
695 698 5.500234 TGGTGCAGCTACATCTTTATCTTT 58.500 37.500 18.08 0.00 0.00 2.52
696 699 5.102953 TGGTGCAGCTACATCTTTATCTT 57.897 39.130 18.08 0.00 0.00 2.40
697 700 4.760530 TGGTGCAGCTACATCTTTATCT 57.239 40.909 18.08 0.00 0.00 1.98
698 701 4.320057 GCATGGTGCAGCTACATCTTTATC 60.320 45.833 18.08 0.00 44.26 1.75
699 702 3.567164 GCATGGTGCAGCTACATCTTTAT 59.433 43.478 18.08 0.00 44.26 1.40
700 703 2.945008 GCATGGTGCAGCTACATCTTTA 59.055 45.455 18.08 0.00 44.26 1.85
701 704 1.747355 GCATGGTGCAGCTACATCTTT 59.253 47.619 18.08 0.00 44.26 2.52
702 705 1.386533 GCATGGTGCAGCTACATCTT 58.613 50.000 18.08 0.00 44.26 2.40
703 706 3.091318 GCATGGTGCAGCTACATCT 57.909 52.632 18.08 0.00 44.26 2.90
713 716 2.674033 TCAGGCAGTGCATGGTGC 60.674 61.111 27.79 4.26 40.91 5.01
714 717 0.036105 TAGTCAGGCAGTGCATGGTG 60.036 55.000 27.79 13.73 40.91 4.17
715 718 0.692476 TTAGTCAGGCAGTGCATGGT 59.308 50.000 27.79 18.16 40.91 3.55
716 719 1.825090 TTTAGTCAGGCAGTGCATGG 58.175 50.000 27.79 11.39 40.91 3.66
717 720 3.693085 AGAATTTAGTCAGGCAGTGCATG 59.307 43.478 23.33 23.33 41.96 4.06
718 721 3.960571 AGAATTTAGTCAGGCAGTGCAT 58.039 40.909 18.61 7.05 0.00 3.96
719 722 3.423539 AGAATTTAGTCAGGCAGTGCA 57.576 42.857 18.61 0.00 0.00 4.57
720 723 4.695455 TGTTAGAATTTAGTCAGGCAGTGC 59.305 41.667 6.55 6.55 0.00 4.40
721 724 6.801539 TTGTTAGAATTTAGTCAGGCAGTG 57.198 37.500 0.00 0.00 0.00 3.66
722 725 8.409358 AATTTGTTAGAATTTAGTCAGGCAGT 57.591 30.769 0.00 0.00 0.00 4.40
777 780 9.856488 TGTTTGCATACCGCTAAAATAAATTTA 57.144 25.926 4.77 0.00 43.06 1.40
778 781 8.764524 TGTTTGCATACCGCTAAAATAAATTT 57.235 26.923 4.77 0.00 43.06 1.82
779 782 8.764524 TTGTTTGCATACCGCTAAAATAAATT 57.235 26.923 4.77 0.00 43.06 1.82
780 783 8.652463 GTTTGTTTGCATACCGCTAAAATAAAT 58.348 29.630 4.77 0.00 43.06 1.40
781 784 7.652105 TGTTTGTTTGCATACCGCTAAAATAAA 59.348 29.630 4.77 0.00 43.06 1.40
782 785 7.115095 GTGTTTGTTTGCATACCGCTAAAATAA 59.885 33.333 4.77 0.00 43.06 1.40
783 786 6.583050 GTGTTTGTTTGCATACCGCTAAAATA 59.417 34.615 4.77 0.00 43.06 1.40
784 787 5.404066 GTGTTTGTTTGCATACCGCTAAAAT 59.596 36.000 4.77 0.00 43.06 1.82
785 788 4.740695 GTGTTTGTTTGCATACCGCTAAAA 59.259 37.500 4.77 0.00 43.06 1.52
786 789 4.291783 GTGTTTGTTTGCATACCGCTAAA 58.708 39.130 4.77 0.00 43.06 1.85
787 790 3.607310 CGTGTTTGTTTGCATACCGCTAA 60.607 43.478 4.77 0.00 43.06 3.09
788 791 2.096169 CGTGTTTGTTTGCATACCGCTA 60.096 45.455 4.77 0.00 43.06 4.26
789 792 1.334599 CGTGTTTGTTTGCATACCGCT 60.335 47.619 4.77 0.00 43.06 5.52
790 793 1.049251 CGTGTTTGTTTGCATACCGC 58.951 50.000 4.77 0.00 42.89 5.68
791 794 2.672188 TCGTGTTTGTTTGCATACCG 57.328 45.000 4.77 1.18 0.00 4.02
792 795 3.484285 GTGTTCGTGTTTGTTTGCATACC 59.516 43.478 4.77 0.00 0.00 2.73
793 796 3.484285 GGTGTTCGTGTTTGTTTGCATAC 59.516 43.478 0.00 0.00 0.00 2.39
794 797 3.489398 GGGTGTTCGTGTTTGTTTGCATA 60.489 43.478 0.00 0.00 0.00 3.14
795 798 2.535331 GGTGTTCGTGTTTGTTTGCAT 58.465 42.857 0.00 0.00 0.00 3.96
796 799 1.402984 GGGTGTTCGTGTTTGTTTGCA 60.403 47.619 0.00 0.00 0.00 4.08
797 800 1.273688 GGGTGTTCGTGTTTGTTTGC 58.726 50.000 0.00 0.00 0.00 3.68
798 801 2.094957 AGTGGGTGTTCGTGTTTGTTTG 60.095 45.455 0.00 0.00 0.00 2.93
799 802 2.162809 GAGTGGGTGTTCGTGTTTGTTT 59.837 45.455 0.00 0.00 0.00 2.83
800 803 1.741145 GAGTGGGTGTTCGTGTTTGTT 59.259 47.619 0.00 0.00 0.00 2.83
801 804 1.339247 TGAGTGGGTGTTCGTGTTTGT 60.339 47.619 0.00 0.00 0.00 2.83
802 805 1.063469 GTGAGTGGGTGTTCGTGTTTG 59.937 52.381 0.00 0.00 0.00 2.93
803 806 1.375551 GTGAGTGGGTGTTCGTGTTT 58.624 50.000 0.00 0.00 0.00 2.83
804 807 0.463116 GGTGAGTGGGTGTTCGTGTT 60.463 55.000 0.00 0.00 0.00 3.32
805 808 1.145377 GGTGAGTGGGTGTTCGTGT 59.855 57.895 0.00 0.00 0.00 4.49
806 809 1.145156 TGGTGAGTGGGTGTTCGTG 59.855 57.895 0.00 0.00 0.00 4.35
807 810 1.145377 GTGGTGAGTGGGTGTTCGT 59.855 57.895 0.00 0.00 0.00 3.85
808 811 1.597027 GGTGGTGAGTGGGTGTTCG 60.597 63.158 0.00 0.00 0.00 3.95
809 812 1.597027 CGGTGGTGAGTGGGTGTTC 60.597 63.158 0.00 0.00 0.00 3.18
810 813 2.067605 TCGGTGGTGAGTGGGTGTT 61.068 57.895 0.00 0.00 0.00 3.32
811 814 2.445085 TCGGTGGTGAGTGGGTGT 60.445 61.111 0.00 0.00 0.00 4.16
812 815 2.030562 GTCGGTGGTGAGTGGGTG 59.969 66.667 0.00 0.00 0.00 4.61
813 816 2.067605 TTGTCGGTGGTGAGTGGGT 61.068 57.895 0.00 0.00 0.00 4.51
814 817 1.597027 GTTGTCGGTGGTGAGTGGG 60.597 63.158 0.00 0.00 0.00 4.61
815 818 1.597027 GGTTGTCGGTGGTGAGTGG 60.597 63.158 0.00 0.00 0.00 4.00
816 819 0.880278 CTGGTTGTCGGTGGTGAGTG 60.880 60.000 0.00 0.00 0.00 3.51
817 820 1.046472 TCTGGTTGTCGGTGGTGAGT 61.046 55.000 0.00 0.00 0.00 3.41
818 821 0.105964 TTCTGGTTGTCGGTGGTGAG 59.894 55.000 0.00 0.00 0.00 3.51
819 822 0.179067 GTTCTGGTTGTCGGTGGTGA 60.179 55.000 0.00 0.00 0.00 4.02
820 823 0.462937 TGTTCTGGTTGTCGGTGGTG 60.463 55.000 0.00 0.00 0.00 4.17
821 824 0.253610 TTGTTCTGGTTGTCGGTGGT 59.746 50.000 0.00 0.00 0.00 4.16
822 825 0.944386 CTTGTTCTGGTTGTCGGTGG 59.056 55.000 0.00 0.00 0.00 4.61
823 826 1.948104 TCTTGTTCTGGTTGTCGGTG 58.052 50.000 0.00 0.00 0.00 4.94
824 827 2.702592 TTCTTGTTCTGGTTGTCGGT 57.297 45.000 0.00 0.00 0.00 4.69
825 828 4.364415 TTTTTCTTGTTCTGGTTGTCGG 57.636 40.909 0.00 0.00 0.00 4.79
846 849 8.132995 GCGGTGTATATTTTAGTGCCTAATTTT 58.867 33.333 0.00 0.00 0.00 1.82
847 850 7.283580 TGCGGTGTATATTTTAGTGCCTAATTT 59.716 33.333 0.00 0.00 0.00 1.82
848 851 6.768861 TGCGGTGTATATTTTAGTGCCTAATT 59.231 34.615 0.00 0.00 0.00 1.40
849 852 6.292923 TGCGGTGTATATTTTAGTGCCTAAT 58.707 36.000 0.00 0.00 0.00 1.73
850 853 5.672503 TGCGGTGTATATTTTAGTGCCTAA 58.327 37.500 0.00 0.00 0.00 2.69
851 854 5.279255 TGCGGTGTATATTTTAGTGCCTA 57.721 39.130 0.00 0.00 0.00 3.93
852 855 4.145365 TGCGGTGTATATTTTAGTGCCT 57.855 40.909 0.00 0.00 0.00 4.75
853 856 4.083484 GGATGCGGTGTATATTTTAGTGCC 60.083 45.833 0.00 0.00 0.00 5.01
854 857 4.755123 AGGATGCGGTGTATATTTTAGTGC 59.245 41.667 0.00 0.00 0.00 4.40
855 858 7.956420 TTAGGATGCGGTGTATATTTTAGTG 57.044 36.000 0.00 0.00 0.00 2.74
856 859 7.988599 TGTTTAGGATGCGGTGTATATTTTAGT 59.011 33.333 0.00 0.00 0.00 2.24
857 860 8.373048 TGTTTAGGATGCGGTGTATATTTTAG 57.627 34.615 0.00 0.00 0.00 1.85
858 861 7.041644 GCTGTTTAGGATGCGGTGTATATTTTA 60.042 37.037 0.00 0.00 0.00 1.52
859 862 6.238648 GCTGTTTAGGATGCGGTGTATATTTT 60.239 38.462 0.00 0.00 0.00 1.82
860 863 5.238650 GCTGTTTAGGATGCGGTGTATATTT 59.761 40.000 0.00 0.00 0.00 1.40
861 864 4.755123 GCTGTTTAGGATGCGGTGTATATT 59.245 41.667 0.00 0.00 0.00 1.28
862 865 4.202315 TGCTGTTTAGGATGCGGTGTATAT 60.202 41.667 0.00 0.00 0.00 0.86
863 866 3.133183 TGCTGTTTAGGATGCGGTGTATA 59.867 43.478 0.00 0.00 0.00 1.47
864 867 2.093181 TGCTGTTTAGGATGCGGTGTAT 60.093 45.455 0.00 0.00 0.00 2.29
865 868 1.276705 TGCTGTTTAGGATGCGGTGTA 59.723 47.619 0.00 0.00 0.00 2.90
866 869 0.036164 TGCTGTTTAGGATGCGGTGT 59.964 50.000 0.00 0.00 0.00 4.16
867 870 0.729116 CTGCTGTTTAGGATGCGGTG 59.271 55.000 0.00 0.00 0.00 4.94
868 871 1.026718 GCTGCTGTTTAGGATGCGGT 61.027 55.000 0.00 0.00 34.59 5.68
869 872 0.745845 AGCTGCTGTTTAGGATGCGG 60.746 55.000 0.00 0.00 35.15 5.69
870 873 1.594862 GTAGCTGCTGTTTAGGATGCG 59.405 52.381 13.43 0.00 0.00 4.73
871 874 1.594862 CGTAGCTGCTGTTTAGGATGC 59.405 52.381 13.43 0.00 0.00 3.91
872 875 2.205074 CCGTAGCTGCTGTTTAGGATG 58.795 52.381 13.43 0.00 0.00 3.51
873 876 1.139058 CCCGTAGCTGCTGTTTAGGAT 59.861 52.381 13.43 0.00 0.00 3.24
874 877 0.535335 CCCGTAGCTGCTGTTTAGGA 59.465 55.000 13.43 0.00 0.00 2.94
875 878 1.090052 GCCCGTAGCTGCTGTTTAGG 61.090 60.000 13.43 7.01 38.99 2.69
876 879 0.391130 TGCCCGTAGCTGCTGTTTAG 60.391 55.000 13.43 0.00 44.23 1.85
877 880 0.251916 ATGCCCGTAGCTGCTGTTTA 59.748 50.000 13.43 0.00 44.23 2.01
878 881 1.002134 ATGCCCGTAGCTGCTGTTT 60.002 52.632 13.43 0.00 44.23 2.83
879 882 1.450312 GATGCCCGTAGCTGCTGTT 60.450 57.895 13.43 0.00 44.23 3.16
880 883 2.184020 TTGATGCCCGTAGCTGCTGT 62.184 55.000 13.43 0.00 44.23 4.40
881 884 1.450134 TTGATGCCCGTAGCTGCTG 60.450 57.895 13.43 0.00 44.23 4.41
882 885 1.450312 GTTGATGCCCGTAGCTGCT 60.450 57.895 7.57 7.57 44.23 4.24
883 886 1.709147 CTGTTGATGCCCGTAGCTGC 61.709 60.000 0.00 0.00 44.23 5.25
884 887 0.391661 ACTGTTGATGCCCGTAGCTG 60.392 55.000 0.00 0.00 44.23 4.24
885 888 0.391661 CACTGTTGATGCCCGTAGCT 60.392 55.000 0.00 0.00 44.23 3.32
886 889 1.369091 CCACTGTTGATGCCCGTAGC 61.369 60.000 0.00 0.00 44.14 3.58
887 890 0.036388 ACCACTGTTGATGCCCGTAG 60.036 55.000 0.00 0.00 0.00 3.51
888 891 1.206132 CTACCACTGTTGATGCCCGTA 59.794 52.381 0.00 0.00 0.00 4.02
889 892 0.036388 CTACCACTGTTGATGCCCGT 60.036 55.000 0.00 0.00 0.00 5.28
890 893 0.036388 ACTACCACTGTTGATGCCCG 60.036 55.000 0.00 0.00 0.00 6.13
891 894 3.560636 ATACTACCACTGTTGATGCCC 57.439 47.619 0.00 0.00 0.00 5.36
902 905 9.948747 ACCCTCCCTTATATTATATACTACCAC 57.051 37.037 0.00 0.00 0.00 4.16
903 906 9.947189 CACCCTCCCTTATATTATATACTACCA 57.053 37.037 0.00 0.00 0.00 3.25
904 907 9.948747 ACACCCTCCCTTATATTATATACTACC 57.051 37.037 0.00 0.00 0.00 3.18
907 910 9.268282 CACACACCCTCCCTTATATTATATACT 57.732 37.037 0.00 0.00 0.00 2.12
908 911 8.483758 CCACACACCCTCCCTTATATTATATAC 58.516 40.741 0.00 0.00 0.00 1.47
909 912 8.411421 TCCACACACCCTCCCTTATATTATATA 58.589 37.037 0.00 0.00 0.00 0.86
910 913 7.260891 TCCACACACCCTCCCTTATATTATAT 58.739 38.462 0.00 0.00 0.00 0.86
911 914 6.636003 TCCACACACCCTCCCTTATATTATA 58.364 40.000 0.00 0.00 0.00 0.98
912 915 5.482580 TCCACACACCCTCCCTTATATTAT 58.517 41.667 0.00 0.00 0.00 1.28
913 916 4.898268 TCCACACACCCTCCCTTATATTA 58.102 43.478 0.00 0.00 0.00 0.98
914 917 3.743132 TCCACACACCCTCCCTTATATT 58.257 45.455 0.00 0.00 0.00 1.28
915 918 3.431411 TCCACACACCCTCCCTTATAT 57.569 47.619 0.00 0.00 0.00 0.86
916 919 2.953093 TCCACACACCCTCCCTTATA 57.047 50.000 0.00 0.00 0.00 0.98
917 920 1.846439 CATCCACACACCCTCCCTTAT 59.154 52.381 0.00 0.00 0.00 1.73
918 921 1.285280 CATCCACACACCCTCCCTTA 58.715 55.000 0.00 0.00 0.00 2.69
919 922 2.078452 CATCCACACACCCTCCCTT 58.922 57.895 0.00 0.00 0.00 3.95
920 923 2.606587 GCATCCACACACCCTCCCT 61.607 63.158 0.00 0.00 0.00 4.20
921 924 2.044946 GCATCCACACACCCTCCC 60.045 66.667 0.00 0.00 0.00 4.30
922 925 2.044946 GGCATCCACACACCCTCC 60.045 66.667 0.00 0.00 0.00 4.30
923 926 0.251341 AAAGGCATCCACACACCCTC 60.251 55.000 0.00 0.00 0.00 4.30
924 927 0.251341 GAAAGGCATCCACACACCCT 60.251 55.000 0.00 0.00 0.00 4.34
925 928 1.250840 GGAAAGGCATCCACACACCC 61.251 60.000 4.63 0.00 39.42 4.61
926 929 0.251341 AGGAAAGGCATCCACACACC 60.251 55.000 11.34 0.00 42.27 4.16
927 930 1.620822 AAGGAAAGGCATCCACACAC 58.379 50.000 11.34 0.00 42.27 3.82
928 931 1.962807 CAAAGGAAAGGCATCCACACA 59.037 47.619 11.34 0.00 42.27 3.72
929 932 1.273327 CCAAAGGAAAGGCATCCACAC 59.727 52.381 11.34 0.00 42.27 3.82
930 933 1.631405 CCAAAGGAAAGGCATCCACA 58.369 50.000 11.34 0.00 42.27 4.17
957 960 1.850345 GGGGTATGGAACTTGGGATGA 59.150 52.381 0.00 0.00 0.00 2.92
991 994 1.218047 GCGTGGTCATGGTGCTCTA 59.782 57.895 0.00 0.00 0.00 2.43
998 1001 4.415150 AGCTGGGCGTGGTCATGG 62.415 66.667 0.00 0.00 0.00 3.66
1022 1025 2.123982 GCAGCATCTGGGGAAGGG 60.124 66.667 0.00 0.00 31.21 3.95
1024 1027 2.119655 GCAGCAGCATCTGGGGAAG 61.120 63.158 0.00 0.00 41.58 3.46
1059 1062 2.746277 ACGGCCGCAAAGATGACC 60.746 61.111 28.58 0.00 0.00 4.02
1139 1142 2.189521 CGAACGGGAAGGGGATGG 59.810 66.667 0.00 0.00 0.00 3.51
1195 1198 3.191371 GGAATGAAGGAGTCGTTGCAAAT 59.809 43.478 0.00 0.00 41.82 2.32
1262 1265 0.307146 CCGGTCGTCGTAGAAGGATC 59.693 60.000 0.00 0.00 39.69 3.36
1312 1315 2.223900 TGGCGACTGATATGCTCAAGAG 60.224 50.000 0.00 0.00 32.14 2.85
1419 1422 3.057245 GCTGGGACATGAAGAAGGTTTTC 60.057 47.826 0.00 0.00 38.20 2.29
1593 1596 1.079336 GACCGGGTTGTACCTCTGC 60.079 63.158 6.32 0.00 38.64 4.26
1597 1600 1.426751 TTCTTGACCGGGTTGTACCT 58.573 50.000 6.32 0.00 38.64 3.08
1657 1660 0.962356 AAACTCTTGCCGGGATGCAG 60.962 55.000 2.18 5.26 43.21 4.41
1672 1675 1.935933 GTGACAGACACGGTCAAACT 58.064 50.000 6.34 0.00 45.96 2.66
1691 1694 1.649390 CCACTCGTCGTCCTCCTCAG 61.649 65.000 0.00 0.00 0.00 3.35
1692 1695 1.674651 CCACTCGTCGTCCTCCTCA 60.675 63.158 0.00 0.00 0.00 3.86
1719 1725 0.397957 TGGCGTAGGAGCAGGGATAA 60.398 55.000 0.00 0.00 39.27 1.75
1743 1749 2.881074 CTGTACCATGACTTCTCCACG 58.119 52.381 0.00 0.00 0.00 4.94
1763 1773 2.415512 GACATGTCCGGTGTAAAGAAGC 59.584 50.000 15.31 0.00 0.00 3.86
1851 1861 1.572447 CGCCGGACACGAAACATTT 59.428 52.632 5.05 0.00 44.60 2.32
1856 1866 2.356553 CTTCCGCCGGACACGAAA 60.357 61.111 4.70 0.00 44.60 3.46
1965 1987 1.154112 GTTGCCGGTGTAATTGCCG 60.154 57.895 1.90 9.89 46.80 5.69
1967 1989 1.214325 GGGTTGCCGGTGTAATTGC 59.786 57.895 1.90 0.00 0.00 3.56
1987 2009 2.476051 GCAACCGTGAGCGATGTG 59.524 61.111 0.00 0.00 41.33 3.21
2212 2301 1.602311 CTGCTGGAGGGAATACATGC 58.398 55.000 0.00 0.00 0.00 4.06
2273 2365 5.822519 ACAAAAATACTCAAGAGTGCAGTGA 59.177 36.000 12.77 0.00 42.52 3.41
2487 2646 2.590821 GGGGATATGCAGCAAGTTGAT 58.409 47.619 7.16 0.00 0.00 2.57
2490 2649 3.520623 GGGGGATATGCAGCAAGTT 57.479 52.632 0.00 0.00 0.00 2.66
2592 2752 2.600420 CAGCTTGTACGCTATGTGTCAG 59.400 50.000 0.00 0.00 38.41 3.51
2707 3681 9.874205 TTCCTTGCTGAAATATAATTTGGAAAG 57.126 29.630 0.00 0.00 0.00 2.62
2730 3902 5.393962 GCAACAACATCATGTACTCTTTCC 58.606 41.667 0.00 0.00 32.02 3.13
2733 3905 4.655963 AGGCAACAACATCATGTACTCTT 58.344 39.130 0.00 0.00 41.41 2.85
3371 4592 2.035449 GGGCCACCTTTTTACTGTTGTC 59.965 50.000 4.39 0.00 0.00 3.18
3484 4705 7.341805 AGAGTATATTTGCTGGTTTGACATCT 58.658 34.615 0.00 0.00 0.00 2.90
3619 4840 9.339850 GTGAGTAGTCCTTCTTGTAGATATACA 57.660 37.037 0.00 0.00 0.00 2.29
4193 5416 2.151202 CGCTGGACCACAAGTTTGTAT 58.849 47.619 0.00 0.00 39.91 2.29
4215 5438 4.937620 GCATCCAATGTCTAGAGAACAACA 59.062 41.667 0.00 0.00 0.00 3.33
4219 5442 4.764172 ACAGCATCCAATGTCTAGAGAAC 58.236 43.478 0.00 0.00 0.00 3.01
4221 5444 4.662468 GACAGCATCCAATGTCTAGAGA 57.338 45.455 0.00 0.00 42.06 3.10
4227 5450 5.412594 TCTTTGTTAGACAGCATCCAATGTC 59.587 40.000 0.00 0.00 44.97 3.06
4228 5451 5.316167 TCTTTGTTAGACAGCATCCAATGT 58.684 37.500 0.00 0.00 0.00 2.71
4509 5763 0.744281 TAATGAGGATGCGCTCGACA 59.256 50.000 9.73 7.81 0.00 4.35
4516 5770 3.127548 ACAAGTTGCTTAATGAGGATGCG 59.872 43.478 1.81 0.00 0.00 4.73
4522 5776 4.860907 GCCATCAACAAGTTGCTTAATGAG 59.139 41.667 8.04 3.44 40.24 2.90
4618 5872 0.388659 AAGCGCAATGGCAAGAAACA 59.611 45.000 11.47 0.00 41.24 2.83
4628 5883 1.328680 AGAACGATAGCAAGCGCAATG 59.671 47.619 11.47 9.81 42.27 2.82
4629 5884 1.656652 AGAACGATAGCAAGCGCAAT 58.343 45.000 11.47 0.00 42.27 3.56
4649 5904 2.159382 CATTTAACTTGCGTGGGGAGT 58.841 47.619 0.00 0.00 0.00 3.85
4669 5924 4.460683 TGGACGTACGGGCATGCC 62.461 66.667 29.47 29.47 0.00 4.40
4673 5928 1.537814 ATTCAGTGGACGTACGGGCA 61.538 55.000 21.06 0.00 0.00 5.36
4829 6084 3.951663 AGTTGTATTTACCCTGCCTCAC 58.048 45.455 0.00 0.00 0.00 3.51
4848 6103 5.450818 TCCTTTATGGCATTTCCTGTAGT 57.549 39.130 4.78 0.00 35.26 2.73
4871 6126 8.846943 TTGTTCATTATTTGCAGAAGAGAGTA 57.153 30.769 0.00 0.00 0.00 2.59
4881 6136 8.312564 TCAATTCATCCTTGTTCATTATTTGCA 58.687 29.630 0.00 0.00 0.00 4.08
4888 6143 7.449395 TCTGTTCTCAATTCATCCTTGTTCATT 59.551 33.333 0.00 0.00 0.00 2.57
4905 6160 5.755409 ACTCTCTAGTCTCTCTGTTCTCA 57.245 43.478 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.