Multiple sequence alignment - TraesCS2B01G563200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G563200 chr2B 100.000 3530 0 0 1 3530 755039362 755035833 0.000000e+00 6519.0
1 TraesCS2B01G563200 chr2B 93.122 1134 50 14 839 1958 755054420 755055539 0.000000e+00 1637.0
2 TraesCS2B01G563200 chr2B 97.195 606 17 0 1949 2554 755056005 755056610 0.000000e+00 1026.0
3 TraesCS2B01G563200 chr2B 91.964 672 45 3 2549 3219 755060574 755061237 0.000000e+00 933.0
4 TraesCS2B01G563200 chr2B 89.386 603 29 16 25 604 755053642 755054232 0.000000e+00 726.0
5 TraesCS2B01G563200 chr2B 93.607 219 13 1 2549 2766 755060233 755060451 3.400000e-85 326.0
6 TraesCS2B01G563200 chr2B 93.023 86 5 1 602 686 4647293 4647208 1.330000e-24 124.0
7 TraesCS2B01G563200 chr2D 93.392 1816 84 10 685 2492 618532632 618530845 0.000000e+00 2656.0
8 TraesCS2B01G563200 chr2D 95.679 1296 56 0 1197 2492 618645451 618646746 0.000000e+00 2084.0
9 TraesCS2B01G563200 chr2D 94.475 181 9 1 25 205 618533468 618533289 9.650000e-71 278.0
10 TraesCS2B01G563200 chr2D 91.304 207 11 2 1000 1206 618644883 618645082 3.470000e-70 276.0
11 TraesCS2B01G563200 chr2D 73.409 613 119 22 2594 3197 196463565 196462988 4.650000e-44 189.0
12 TraesCS2B01G563200 chr2D 93.103 87 6 0 518 604 618532717 618532631 1.030000e-25 128.0
13 TraesCS2B01G563200 chr2D 91.398 93 7 1 600 691 13622452 13622544 3.700000e-25 126.0
14 TraesCS2B01G563200 chr2A 92.660 1812 97 18 708 2492 749523427 749525229 0.000000e+00 2577.0
15 TraesCS2B01G563200 chr2A 92.044 1810 109 20 746 2531 749448344 749446546 0.000000e+00 2512.0
16 TraesCS2B01G563200 chr2A 90.000 590 33 12 25 599 749522776 749523354 0.000000e+00 739.0
17 TraesCS2B01G563200 chr2A 95.146 103 4 1 30 132 749450746 749450645 1.010000e-35 161.0
18 TraesCS2B01G563200 chr2A 100.000 32 0 0 44 75 749441244 749441275 3.810000e-05 60.2
19 TraesCS2B01G563200 chr5B 90.067 1500 131 7 1004 2492 233922282 233923774 0.000000e+00 1929.0
20 TraesCS2B01G563200 chr5D 89.660 1499 139 5 1004 2492 217755034 217756526 0.000000e+00 1895.0
21 TraesCS2B01G563200 chr5D 77.198 364 68 11 2868 3226 462288929 462288576 7.730000e-47 198.0
22 TraesCS2B01G563200 chr5A 89.467 1500 140 7 1004 2492 290547997 290549489 0.000000e+00 1879.0
23 TraesCS2B01G563200 chr4D 82.326 1505 224 18 1015 2492 115543837 115542348 0.000000e+00 1267.0
24 TraesCS2B01G563200 chr4D 75.862 638 134 16 2591 3219 108232385 108231759 1.230000e-79 307.0
25 TraesCS2B01G563200 chr7D 75.428 643 137 17 2594 3226 37971809 37972440 3.450000e-75 292.0
26 TraesCS2B01G563200 chr3D 76.693 502 84 17 2662 3158 477242968 477243441 7.570000e-62 248.0
27 TraesCS2B01G563200 chr3D 80.205 293 52 3 2867 3158 299924791 299924504 7.670000e-52 215.0
28 TraesCS2B01G563200 chr3D 93.182 88 5 1 602 688 571465093 571465180 1.030000e-25 128.0
29 TraesCS2B01G563200 chr3D 87.500 64 4 3 2651 2712 592596704 592596643 1.760000e-08 71.3
30 TraesCS2B01G563200 chr4A 74.016 635 146 16 2591 3219 468145356 468145977 1.270000e-59 241.0
31 TraesCS2B01G563200 chr6B 78.806 335 57 10 2867 3196 621051128 621050803 2.760000e-51 213.0
32 TraesCS2B01G563200 chr6B 94.118 85 4 1 603 686 664426900 664426816 1.030000e-25 128.0
33 TraesCS2B01G563200 chr6B 81.884 138 15 8 234 365 711679091 711679224 1.340000e-19 108.0
34 TraesCS2B01G563200 chr6D 79.359 281 52 3 2866 3145 81177155 81176880 3.600000e-45 193.0
35 TraesCS2B01G563200 chr3A 76.045 359 75 8 2865 3219 111727007 111727358 3.620000e-40 176.0
36 TraesCS2B01G563200 chr1B 92.473 93 6 1 600 691 474683110 474683018 7.950000e-27 132.0
37 TraesCS2B01G563200 chr1B 90.526 95 7 2 600 692 325979009 325979103 1.330000e-24 124.0
38 TraesCS2B01G563200 chr4B 92.857 84 6 0 603 686 188752528 188752445 4.790000e-24 122.0
39 TraesCS2B01G563200 chr7B 85.965 114 13 3 586 698 226902786 226902897 6.190000e-23 119.0
40 TraesCS2B01G563200 chr7B 87.879 99 11 1 598 695 63564837 63564739 8.010000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G563200 chr2B 755035833 755039362 3529 True 6519.000000 6519 100.000000 1 3530 1 chr2B.!!$R2 3529
1 TraesCS2B01G563200 chr2B 755053642 755061237 7595 False 929.600000 1637 93.054800 25 3219 5 chr2B.!!$F1 3194
2 TraesCS2B01G563200 chr2D 618644883 618646746 1863 False 1180.000000 2084 93.491500 1000 2492 2 chr2D.!!$F2 1492
3 TraesCS2B01G563200 chr2D 618530845 618533468 2623 True 1020.666667 2656 93.656667 25 2492 3 chr2D.!!$R2 2467
4 TraesCS2B01G563200 chr2A 749522776 749525229 2453 False 1658.000000 2577 91.330000 25 2492 2 chr2A.!!$F2 2467
5 TraesCS2B01G563200 chr2A 749446546 749450746 4200 True 1336.500000 2512 93.595000 30 2531 2 chr2A.!!$R1 2501
6 TraesCS2B01G563200 chr5B 233922282 233923774 1492 False 1929.000000 1929 90.067000 1004 2492 1 chr5B.!!$F1 1488
7 TraesCS2B01G563200 chr5D 217755034 217756526 1492 False 1895.000000 1895 89.660000 1004 2492 1 chr5D.!!$F1 1488
8 TraesCS2B01G563200 chr5A 290547997 290549489 1492 False 1879.000000 1879 89.467000 1004 2492 1 chr5A.!!$F1 1488
9 TraesCS2B01G563200 chr4D 115542348 115543837 1489 True 1267.000000 1267 82.326000 1015 2492 1 chr4D.!!$R2 1477
10 TraesCS2B01G563200 chr4D 108231759 108232385 626 True 307.000000 307 75.862000 2591 3219 1 chr4D.!!$R1 628
11 TraesCS2B01G563200 chr7D 37971809 37972440 631 False 292.000000 292 75.428000 2594 3226 1 chr7D.!!$F1 632
12 TraesCS2B01G563200 chr4A 468145356 468145977 621 False 241.000000 241 74.016000 2591 3219 1 chr4A.!!$F1 628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.038618 CGACCGATGTGGAGTTGACA 60.039 55.0 0.0 0.0 42.0 3.58 F
1644 4297 0.469917 CCATGTCCGACCTAGCCAAT 59.530 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2019 5174 0.324368 TCAGGTGCTCGTAGGTGGAT 60.324 55.0 0.00 0.0 0.0 3.41 R
3385 10524 0.038744 CAAGGAAGCTCACCACCCAT 59.961 55.0 11.59 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.871772 AACAGGGTCTACGACGACG 59.128 57.895 5.58 5.58 45.75 5.12
72 73 0.038618 CGACCGATGTGGAGTTGACA 60.039 55.000 0.00 0.00 42.00 3.58
73 74 1.404181 CGACCGATGTGGAGTTGACAT 60.404 52.381 0.00 0.00 42.00 3.06
250 2076 8.339714 CAAGAAAACAAAATCAATGCTCACAAT 58.660 29.630 0.00 0.00 0.00 2.71
314 2151 4.882671 GTATTTCACGAATGTGGCTCAT 57.117 40.909 0.00 0.00 46.42 2.90
326 2164 6.237728 CGAATGTGGCTCATGATGAAAATTTG 60.238 38.462 2.36 0.00 36.81 2.32
359 2197 9.757227 CTTGAAATATTTGTCAAAGTTTACCCA 57.243 29.630 5.17 1.05 33.52 4.51
536 2400 8.048534 TGCATAGGGTAGTAGACGTATAATTC 57.951 38.462 0.00 0.00 0.00 2.17
541 2405 5.335191 GGGTAGTAGACGTATAATTCCACCG 60.335 48.000 13.92 0.00 0.00 4.94
543 2407 3.633525 AGTAGACGTATAATTCCACCGCA 59.366 43.478 0.00 0.00 0.00 5.69
544 2408 2.817901 AGACGTATAATTCCACCGCAC 58.182 47.619 0.00 0.00 0.00 5.34
605 2505 9.944376 TCAGATCAAGTTTAGCAATTTACTACT 57.056 29.630 0.00 0.00 0.00 2.57
607 2507 9.384764 AGATCAAGTTTAGCAATTTACTACTCC 57.615 33.333 0.00 0.00 0.00 3.85
608 2508 7.916914 TCAAGTTTAGCAATTTACTACTCCC 57.083 36.000 0.00 0.00 0.00 4.30
609 2509 7.686434 TCAAGTTTAGCAATTTACTACTCCCT 58.314 34.615 0.00 0.00 0.00 4.20
610 2510 7.822822 TCAAGTTTAGCAATTTACTACTCCCTC 59.177 37.037 0.00 0.00 0.00 4.30
611 2511 6.651086 AGTTTAGCAATTTACTACTCCCTCC 58.349 40.000 0.00 0.00 0.00 4.30
612 2512 6.214819 AGTTTAGCAATTTACTACTCCCTCCA 59.785 38.462 0.00 0.00 0.00 3.86
613 2513 6.824958 TTAGCAATTTACTACTCCCTCCAT 57.175 37.500 0.00 0.00 0.00 3.41
614 2514 5.297569 AGCAATTTACTACTCCCTCCATC 57.702 43.478 0.00 0.00 0.00 3.51
615 2515 4.971924 AGCAATTTACTACTCCCTCCATCT 59.028 41.667 0.00 0.00 0.00 2.90
616 2516 5.071115 AGCAATTTACTACTCCCTCCATCTC 59.929 44.000 0.00 0.00 0.00 2.75
617 2517 5.163301 GCAATTTACTACTCCCTCCATCTCA 60.163 44.000 0.00 0.00 0.00 3.27
618 2518 6.465035 GCAATTTACTACTCCCTCCATCTCAT 60.465 42.308 0.00 0.00 0.00 2.90
619 2519 7.256332 GCAATTTACTACTCCCTCCATCTCATA 60.256 40.741 0.00 0.00 0.00 2.15
620 2520 8.651389 CAATTTACTACTCCCTCCATCTCATAA 58.349 37.037 0.00 0.00 0.00 1.90
621 2521 8.980832 ATTTACTACTCCCTCCATCTCATAAT 57.019 34.615 0.00 0.00 0.00 1.28
622 2522 7.782897 TTACTACTCCCTCCATCTCATAATG 57.217 40.000 0.00 0.00 0.00 1.90
623 2523 5.721225 ACTACTCCCTCCATCTCATAATGT 58.279 41.667 0.00 0.00 0.00 2.71
624 2524 6.864421 ACTACTCCCTCCATCTCATAATGTA 58.136 40.000 0.00 0.00 0.00 2.29
625 2525 7.306013 ACTACTCCCTCCATCTCATAATGTAA 58.694 38.462 0.00 0.00 0.00 2.41
626 2526 6.678568 ACTCCCTCCATCTCATAATGTAAG 57.321 41.667 0.00 0.00 0.00 2.34
627 2527 6.385443 ACTCCCTCCATCTCATAATGTAAGA 58.615 40.000 0.00 0.00 0.00 2.10
628 2528 6.268847 ACTCCCTCCATCTCATAATGTAAGAC 59.731 42.308 0.00 0.00 0.00 3.01
629 2529 5.243954 TCCCTCCATCTCATAATGTAAGACG 59.756 44.000 0.00 0.00 0.00 4.18
630 2530 5.011125 CCCTCCATCTCATAATGTAAGACGT 59.989 44.000 0.00 0.00 0.00 4.34
631 2531 6.463049 CCCTCCATCTCATAATGTAAGACGTT 60.463 42.308 0.00 0.00 0.00 3.99
632 2532 6.986817 CCTCCATCTCATAATGTAAGACGTTT 59.013 38.462 0.00 0.00 0.00 3.60
633 2533 7.495934 CCTCCATCTCATAATGTAAGACGTTTT 59.504 37.037 0.00 0.00 0.00 2.43
634 2534 8.786826 TCCATCTCATAATGTAAGACGTTTTT 57.213 30.769 0.00 0.00 0.00 1.94
661 2561 5.823209 ACTAAACTAGTGCCAAAAACGTT 57.177 34.783 0.00 0.00 37.69 3.99
662 2562 6.198650 ACTAAACTAGTGCCAAAAACGTTT 57.801 33.333 7.96 7.96 37.69 3.60
663 2563 6.623486 ACTAAACTAGTGCCAAAAACGTTTT 58.377 32.000 20.26 20.26 37.69 2.43
664 2564 7.760437 ACTAAACTAGTGCCAAAAACGTTTTA 58.240 30.769 25.44 8.23 37.69 1.52
665 2565 6.874297 AAACTAGTGCCAAAAACGTTTTAC 57.126 33.333 25.44 19.04 0.00 2.01
666 2566 5.564048 ACTAGTGCCAAAAACGTTTTACA 57.436 34.783 25.44 19.92 0.00 2.41
667 2567 6.139048 ACTAGTGCCAAAAACGTTTTACAT 57.861 33.333 25.44 8.61 0.00 2.29
668 2568 6.566141 ACTAGTGCCAAAAACGTTTTACATT 58.434 32.000 25.44 20.46 0.00 2.71
669 2569 7.705214 ACTAGTGCCAAAAACGTTTTACATTA 58.295 30.769 25.44 20.47 0.00 1.90
670 2570 8.354426 ACTAGTGCCAAAAACGTTTTACATTAT 58.646 29.630 25.44 13.46 0.00 1.28
671 2571 7.401484 AGTGCCAAAAACGTTTTACATTATG 57.599 32.000 25.44 17.88 0.00 1.90
672 2572 6.422400 AGTGCCAAAAACGTTTTACATTATGG 59.578 34.615 25.44 25.36 0.00 2.74
673 2573 5.696724 TGCCAAAAACGTTTTACATTATGGG 59.303 36.000 28.19 19.22 0.00 4.00
674 2574 5.927115 GCCAAAAACGTTTTACATTATGGGA 59.073 36.000 28.19 0.00 0.00 4.37
675 2575 6.128769 GCCAAAAACGTTTTACATTATGGGAC 60.129 38.462 28.19 16.31 0.00 4.46
676 2576 6.088350 CCAAAAACGTTTTACATTATGGGACG 59.912 38.462 25.44 4.10 35.39 4.79
677 2577 4.950434 AACGTTTTACATTATGGGACGG 57.050 40.909 0.00 0.00 33.74 4.79
678 2578 4.205065 ACGTTTTACATTATGGGACGGA 57.795 40.909 13.17 0.00 33.74 4.69
679 2579 4.186159 ACGTTTTACATTATGGGACGGAG 58.814 43.478 13.17 0.00 33.74 4.63
680 2580 3.558418 CGTTTTACATTATGGGACGGAGG 59.442 47.826 0.00 0.00 0.00 4.30
681 2581 3.849563 TTTACATTATGGGACGGAGGG 57.150 47.619 0.00 0.00 0.00 4.30
682 2582 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
683 2583 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
684 2584 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
685 2585 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
704 2614 9.975218 AGGGAGTAATTTTCTCTAATAAAAGCA 57.025 29.630 3.47 0.00 33.06 3.91
734 2645 3.740397 CATGCACACACAGGCCCG 61.740 66.667 0.00 0.00 0.00 6.13
739 2941 3.161450 ACACACAGGCCCGACACT 61.161 61.111 0.00 0.00 0.00 3.55
873 3125 0.981277 TCTTCTTCCCCCGTCCATCC 60.981 60.000 0.00 0.00 0.00 3.51
887 3139 2.184830 CATCCTGCTCCATGTGCGG 61.185 63.158 9.12 9.12 36.63 5.69
891 3143 4.657408 TGCTCCATGTGCGGCCAA 62.657 61.111 2.24 0.00 0.00 4.52
893 3145 2.360350 CTCCATGTGCGGCCAACT 60.360 61.111 2.24 0.00 0.00 3.16
895 3147 3.443045 CCATGTGCGGCCAACTCC 61.443 66.667 2.24 0.00 0.00 3.85
896 3148 2.672651 CATGTGCGGCCAACTCCA 60.673 61.111 2.24 0.00 0.00 3.86
897 3149 2.048023 CATGTGCGGCCAACTCCAT 61.048 57.895 2.24 0.00 0.00 3.41
899 3151 3.443045 GTGCGGCCAACTCCATGG 61.443 66.667 4.97 4.97 43.70 3.66
926 3178 4.340617 GGAGTATATAGACAGAGGCAGCT 58.659 47.826 0.00 0.00 0.00 4.24
969 3221 1.334599 GCTCACATCGATCGTCTCCTC 60.335 57.143 15.94 0.00 0.00 3.71
974 3226 2.223994 ACATCGATCGTCTCCTCGACTA 60.224 50.000 15.94 0.00 45.63 2.59
979 3231 2.983907 TCGTCTCCTCGACTAGTGAT 57.016 50.000 0.00 0.00 40.59 3.06
980 3232 2.823984 TCGTCTCCTCGACTAGTGATC 58.176 52.381 0.00 0.00 40.59 2.92
983 3253 2.875933 GTCTCCTCGACTAGTGATCAGG 59.124 54.545 0.00 0.00 39.61 3.86
992 3262 4.553742 CGACTAGTGATCAGGAACTCATCG 60.554 50.000 0.00 0.00 39.45 3.84
997 3271 4.648762 AGTGATCAGGAACTCATCGAAGAT 59.351 41.667 0.00 0.00 39.45 2.40
998 3272 5.128499 AGTGATCAGGAACTCATCGAAGATT 59.872 40.000 0.00 0.00 39.45 2.40
1008 3283 7.095439 GGAACTCATCGAAGATTAATGGATGAC 60.095 40.741 11.25 5.63 45.12 3.06
1009 3284 7.060383 ACTCATCGAAGATTAATGGATGACT 57.940 36.000 11.25 4.31 45.12 3.41
1599 4252 1.698506 AGATCTCTTTCGGGCTCGAT 58.301 50.000 10.79 0.00 45.51 3.59
1644 4297 0.469917 CCATGTCCGACCTAGCCAAT 59.530 55.000 0.00 0.00 0.00 3.16
2160 5315 3.391382 GGCACCTACGTGGAGGCT 61.391 66.667 16.07 0.00 45.83 4.58
2262 5417 3.314331 CGGTGGCTCACTGGACCT 61.314 66.667 6.32 0.00 37.12 3.85
2268 5423 4.767255 CTCACTGGACCTGGCGGC 62.767 72.222 0.00 0.00 0.00 6.53
2413 5568 1.003233 GTGGAGGTGGTTGGAGAGC 60.003 63.158 0.00 0.00 0.00 4.09
2577 9361 5.954150 AGGTCCAAATTGATATGAGCACTTT 59.046 36.000 0.00 0.00 0.00 2.66
2628 9412 3.848272 TTCACTCGCAAATTTGATCCC 57.152 42.857 22.31 3.00 0.00 3.85
2635 9419 2.544277 CGCAAATTTGATCCCGCATCAT 60.544 45.455 22.31 0.00 41.42 2.45
2698 9823 2.016318 GCCATCATTCAACGATGTCCA 58.984 47.619 0.00 0.00 38.90 4.02
2766 9892 1.133606 ACCGGCCGGGATTTCATAAAT 60.134 47.619 44.99 19.50 39.97 1.40
2838 9970 3.208747 AGAAGAAGAAAAGCCGTTCCA 57.791 42.857 0.00 0.00 0.00 3.53
2936 10068 3.785859 TCTCCATGAGCACCGGCC 61.786 66.667 0.00 0.00 42.56 6.13
2940 10072 1.073722 CCATGAGCACCGGCCATAT 59.926 57.895 0.00 0.00 42.56 1.78
2972 10104 0.831307 AAGTGAAGCTCCGGTATCCC 59.169 55.000 0.00 0.00 0.00 3.85
2994 10128 2.427453 GCGAGGAAGAGTAGAACATGGA 59.573 50.000 0.00 0.00 0.00 3.41
3002 10136 7.400339 AGGAAGAGTAGAACATGGAATACAGAA 59.600 37.037 0.00 0.00 0.00 3.02
3005 10139 6.377429 AGAGTAGAACATGGAATACAGAACGA 59.623 38.462 0.00 0.00 0.00 3.85
3006 10140 6.931838 AGTAGAACATGGAATACAGAACGAA 58.068 36.000 0.00 0.00 0.00 3.85
3048 10186 0.978146 ACGCCTCTCATGCCCTACTT 60.978 55.000 0.00 0.00 0.00 2.24
3056 10194 2.166459 CTCATGCCCTACTTGTTCTCGA 59.834 50.000 0.00 0.00 0.00 4.04
3073 10211 1.294659 CGAAGGAGACTGCACCTTGC 61.295 60.000 10.84 3.06 43.86 4.01
3224 10363 2.028190 CAGCTATGCCTCGGTCGG 59.972 66.667 0.00 0.00 0.00 4.79
3231 10370 4.699522 GCCTCGGTCGGCCTGTTT 62.700 66.667 3.66 0.00 44.41 2.83
3232 10371 2.742372 CCTCGGTCGGCCTGTTTG 60.742 66.667 3.66 0.00 0.00 2.93
3233 10372 3.423154 CTCGGTCGGCCTGTTTGC 61.423 66.667 3.66 0.00 0.00 3.68
3234 10373 4.243008 TCGGTCGGCCTGTTTGCA 62.243 61.111 3.66 0.00 0.00 4.08
3235 10374 3.055719 CGGTCGGCCTGTTTGCAT 61.056 61.111 3.66 0.00 0.00 3.96
3236 10375 2.568090 GGTCGGCCTGTTTGCATG 59.432 61.111 0.00 0.00 0.00 4.06
3237 10376 2.268076 GGTCGGCCTGTTTGCATGT 61.268 57.895 0.00 0.00 0.00 3.21
3238 10377 1.210155 GTCGGCCTGTTTGCATGTC 59.790 57.895 0.00 0.00 0.00 3.06
3239 10378 2.176546 CGGCCTGTTTGCATGTCG 59.823 61.111 0.00 0.00 32.69 4.35
3240 10379 2.126346 GGCCTGTTTGCATGTCGC 60.126 61.111 0.00 0.00 42.89 5.19
3241 10380 2.629656 GGCCTGTTTGCATGTCGCT 61.630 57.895 0.00 0.00 43.06 4.93
3242 10381 1.286880 GCCTGTTTGCATGTCGCTT 59.713 52.632 0.00 0.00 43.06 4.68
3243 10382 0.730494 GCCTGTTTGCATGTCGCTTC 60.730 55.000 0.00 0.00 43.06 3.86
3244 10383 0.592637 CCTGTTTGCATGTCGCTTCA 59.407 50.000 0.00 0.00 43.06 3.02
3245 10384 1.400629 CCTGTTTGCATGTCGCTTCAG 60.401 52.381 0.00 0.00 43.06 3.02
3246 10385 1.265095 CTGTTTGCATGTCGCTTCAGT 59.735 47.619 0.00 0.00 43.06 3.41
3247 10386 1.675483 TGTTTGCATGTCGCTTCAGTT 59.325 42.857 0.00 0.00 43.06 3.16
3248 10387 2.875317 TGTTTGCATGTCGCTTCAGTTA 59.125 40.909 0.00 0.00 43.06 2.24
3249 10388 3.501828 TGTTTGCATGTCGCTTCAGTTAT 59.498 39.130 0.00 0.00 43.06 1.89
3250 10389 3.745332 TTGCATGTCGCTTCAGTTATG 57.255 42.857 0.00 0.00 43.06 1.90
3251 10390 2.009051 TGCATGTCGCTTCAGTTATGG 58.991 47.619 0.00 0.00 43.06 2.74
3252 10391 1.268234 GCATGTCGCTTCAGTTATGGC 60.268 52.381 0.00 0.00 37.77 4.40
3253 10392 1.331756 CATGTCGCTTCAGTTATGGCC 59.668 52.381 0.00 0.00 0.00 5.36
3254 10393 0.613260 TGTCGCTTCAGTTATGGCCT 59.387 50.000 3.32 0.00 0.00 5.19
3255 10394 1.291132 GTCGCTTCAGTTATGGCCTC 58.709 55.000 3.32 0.00 0.00 4.70
3256 10395 0.901827 TCGCTTCAGTTATGGCCTCA 59.098 50.000 3.32 0.00 0.00 3.86
3257 10396 1.277842 TCGCTTCAGTTATGGCCTCAA 59.722 47.619 3.32 0.00 0.00 3.02
3258 10397 1.398390 CGCTTCAGTTATGGCCTCAAC 59.602 52.381 3.32 8.17 0.00 3.18
3259 10398 2.716217 GCTTCAGTTATGGCCTCAACT 58.284 47.619 14.58 14.58 35.38 3.16
3260 10399 3.678806 CGCTTCAGTTATGGCCTCAACTA 60.679 47.826 18.45 7.12 33.29 2.24
3261 10400 4.261801 GCTTCAGTTATGGCCTCAACTAA 58.738 43.478 18.45 5.68 33.29 2.24
3262 10401 4.884164 GCTTCAGTTATGGCCTCAACTAAT 59.116 41.667 18.45 0.00 33.29 1.73
3263 10402 5.358160 GCTTCAGTTATGGCCTCAACTAATT 59.642 40.000 18.45 0.00 33.29 1.40
3264 10403 6.678900 GCTTCAGTTATGGCCTCAACTAATTG 60.679 42.308 18.45 10.08 33.29 2.32
3265 10404 6.061022 TCAGTTATGGCCTCAACTAATTGA 57.939 37.500 18.45 11.77 42.73 2.57
3266 10405 5.880332 TCAGTTATGGCCTCAACTAATTGAC 59.120 40.000 18.45 0.35 40.01 3.18
3267 10406 4.876107 AGTTATGGCCTCAACTAATTGACG 59.124 41.667 17.70 0.00 40.01 4.35
3268 10407 2.851263 TGGCCTCAACTAATTGACGT 57.149 45.000 3.32 0.00 40.01 4.34
3269 10408 2.695359 TGGCCTCAACTAATTGACGTC 58.305 47.619 9.11 9.11 40.01 4.34
3270 10409 2.037902 TGGCCTCAACTAATTGACGTCA 59.962 45.455 15.76 15.76 40.01 4.35
3271 10410 2.415512 GGCCTCAACTAATTGACGTCAC 59.584 50.000 19.90 1.49 40.01 3.67
3272 10411 3.326747 GCCTCAACTAATTGACGTCACT 58.673 45.455 19.90 10.75 40.01 3.41
3273 10412 3.123621 GCCTCAACTAATTGACGTCACTG 59.876 47.826 19.90 10.89 40.01 3.66
3274 10413 4.556233 CCTCAACTAATTGACGTCACTGA 58.444 43.478 19.90 5.09 40.01 3.41
3275 10414 4.386049 CCTCAACTAATTGACGTCACTGAC 59.614 45.833 19.90 0.00 40.01 3.51
3276 10415 4.304110 TCAACTAATTGACGTCACTGACC 58.696 43.478 19.90 0.00 40.01 4.02
3277 10416 2.942710 ACTAATTGACGTCACTGACCG 58.057 47.619 19.90 7.43 0.00 4.79
3278 10417 2.295349 ACTAATTGACGTCACTGACCGT 59.705 45.455 19.90 8.08 0.00 4.83
3279 10418 1.779569 AATTGACGTCACTGACCGTC 58.220 50.000 19.90 19.05 36.98 4.79
3280 10419 0.671796 ATTGACGTCACTGACCGTCA 59.328 50.000 19.90 22.19 40.84 4.35
3281 10420 0.456628 TTGACGTCACTGACCGTCAA 59.543 50.000 27.38 27.38 44.55 3.18
3282 10421 0.456628 TGACGTCACTGACCGTCAAA 59.543 50.000 23.06 10.13 40.23 2.69
3283 10422 1.067974 TGACGTCACTGACCGTCAAAT 59.932 47.619 23.06 0.00 40.23 2.32
3284 10423 2.293955 TGACGTCACTGACCGTCAAATA 59.706 45.455 23.06 9.41 40.23 1.40
3285 10424 2.915463 GACGTCACTGACCGTCAAATAG 59.085 50.000 11.55 0.00 36.70 1.73
3286 10425 2.555325 ACGTCACTGACCGTCAAATAGA 59.445 45.455 2.19 0.00 0.00 1.98
3287 10426 3.005050 ACGTCACTGACCGTCAAATAGAA 59.995 43.478 2.19 0.00 0.00 2.10
3288 10427 3.608506 CGTCACTGACCGTCAAATAGAAG 59.391 47.826 2.19 0.00 0.00 2.85
3297 10436 5.189659 CCGTCAAATAGAAGGTCTCTAGG 57.810 47.826 0.00 0.00 40.06 3.02
3298 10437 4.500035 CCGTCAAATAGAAGGTCTCTAGGC 60.500 50.000 0.00 0.00 40.06 3.93
3299 10438 4.612943 GTCAAATAGAAGGTCTCTAGGCG 58.387 47.826 0.00 0.00 40.06 5.52
3300 10439 4.338682 GTCAAATAGAAGGTCTCTAGGCGA 59.661 45.833 0.00 0.00 40.06 5.54
3301 10440 4.580995 TCAAATAGAAGGTCTCTAGGCGAG 59.419 45.833 0.00 0.00 40.06 5.03
3302 10441 4.440826 AATAGAAGGTCTCTAGGCGAGA 57.559 45.455 0.00 0.00 46.32 4.04
3313 10452 6.078202 TCTCTAGGCGAGATTTCTTGTATG 57.922 41.667 0.00 0.00 43.72 2.39
3314 10453 5.828328 TCTCTAGGCGAGATTTCTTGTATGA 59.172 40.000 0.00 0.00 43.72 2.15
3315 10454 5.833082 TCTAGGCGAGATTTCTTGTATGAC 58.167 41.667 0.00 0.00 0.00 3.06
3316 10455 3.448686 AGGCGAGATTTCTTGTATGACG 58.551 45.455 0.00 0.00 0.00 4.35
3317 10456 2.033662 GGCGAGATTTCTTGTATGACGC 60.034 50.000 0.00 0.00 42.17 5.19
3318 10457 2.860735 GCGAGATTTCTTGTATGACGCT 59.139 45.455 0.00 0.00 40.28 5.07
3319 10458 3.060873 GCGAGATTTCTTGTATGACGCTC 60.061 47.826 0.00 0.00 40.28 5.03
3320 10459 3.487574 CGAGATTTCTTGTATGACGCTCC 59.512 47.826 0.00 0.00 0.00 4.70
3321 10460 4.688021 GAGATTTCTTGTATGACGCTCCT 58.312 43.478 0.00 0.00 0.00 3.69
3322 10461 5.091261 AGATTTCTTGTATGACGCTCCTT 57.909 39.130 0.00 0.00 0.00 3.36
3323 10462 4.872691 AGATTTCTTGTATGACGCTCCTTG 59.127 41.667 0.00 0.00 0.00 3.61
3324 10463 2.010145 TCTTGTATGACGCTCCTTGC 57.990 50.000 0.00 0.00 38.57 4.01
3336 10475 3.122937 GCTCCTTGCGTCATAAAGTTG 57.877 47.619 0.00 0.00 0.00 3.16
3337 10476 2.742053 GCTCCTTGCGTCATAAAGTTGA 59.258 45.455 0.00 0.00 0.00 3.18
3338 10477 3.181516 GCTCCTTGCGTCATAAAGTTGAG 60.182 47.826 0.00 0.00 0.00 3.02
3339 10478 3.334691 TCCTTGCGTCATAAAGTTGAGG 58.665 45.455 0.00 0.00 35.22 3.86
3345 10484 4.458951 CGTCATAAAGTTGAGGCTATGC 57.541 45.455 0.00 0.00 0.00 3.14
3346 10485 4.122776 CGTCATAAAGTTGAGGCTATGCT 58.877 43.478 0.00 0.00 0.00 3.79
3347 10486 4.025396 CGTCATAAAGTTGAGGCTATGCTG 60.025 45.833 0.00 0.00 0.00 4.41
3348 10487 4.274459 GTCATAAAGTTGAGGCTATGCTGG 59.726 45.833 0.00 0.00 0.00 4.85
3349 10488 4.164030 TCATAAAGTTGAGGCTATGCTGGA 59.836 41.667 0.00 0.00 0.00 3.86
3350 10489 2.706339 AAGTTGAGGCTATGCTGGAG 57.294 50.000 0.00 0.00 0.00 3.86
3351 10490 0.835941 AGTTGAGGCTATGCTGGAGG 59.164 55.000 0.00 0.00 0.00 4.30
3352 10491 0.817229 GTTGAGGCTATGCTGGAGGC 60.817 60.000 0.00 0.00 39.71 4.70
3354 10493 3.560989 AGGCTATGCTGGAGGCTC 58.439 61.111 5.78 5.78 46.13 4.70
3355 10494 1.383664 AGGCTATGCTGGAGGCTCA 60.384 57.895 17.69 1.59 46.13 4.26
3356 10495 0.984961 AGGCTATGCTGGAGGCTCAA 60.985 55.000 17.69 3.56 46.13 3.02
3357 10496 0.534652 GGCTATGCTGGAGGCTCAAG 60.535 60.000 14.90 14.90 42.39 3.02
3358 10497 1.165284 GCTATGCTGGAGGCTCAAGC 61.165 60.000 32.60 32.60 42.39 4.01
3368 10507 4.943822 GCTCAAGCCTAGTGGTCC 57.056 61.111 0.00 0.00 35.27 4.46
3369 10508 1.983224 GCTCAAGCCTAGTGGTCCA 59.017 57.895 0.00 0.00 35.27 4.02
3370 10509 0.107945 GCTCAAGCCTAGTGGTCCAG 60.108 60.000 0.00 0.00 35.27 3.86
3371 10510 0.107945 CTCAAGCCTAGTGGTCCAGC 60.108 60.000 0.00 0.00 35.27 4.85
3372 10511 0.545309 TCAAGCCTAGTGGTCCAGCT 60.545 55.000 0.00 0.00 35.27 4.24
3373 10512 0.107945 CAAGCCTAGTGGTCCAGCTC 60.108 60.000 3.95 0.00 35.27 4.09
3374 10513 1.608717 AAGCCTAGTGGTCCAGCTCG 61.609 60.000 3.95 0.00 35.27 5.03
3375 10514 2.496817 CCTAGTGGTCCAGCTCGC 59.503 66.667 0.00 0.00 0.00 5.03
3376 10515 2.055042 CCTAGTGGTCCAGCTCGCT 61.055 63.158 0.00 0.00 0.00 4.93
3377 10516 1.435515 CTAGTGGTCCAGCTCGCTC 59.564 63.158 0.00 0.00 0.00 5.03
3378 10517 1.000771 TAGTGGTCCAGCTCGCTCT 60.001 57.895 0.00 0.00 0.00 4.09
3379 10518 0.255033 TAGTGGTCCAGCTCGCTCTA 59.745 55.000 0.00 0.00 0.00 2.43
3380 10519 0.612174 AGTGGTCCAGCTCGCTCTAA 60.612 55.000 0.00 0.00 0.00 2.10
3381 10520 0.458716 GTGGTCCAGCTCGCTCTAAC 60.459 60.000 0.00 0.00 0.00 2.34
3382 10521 0.898326 TGGTCCAGCTCGCTCTAACA 60.898 55.000 0.00 0.00 0.00 2.41
3383 10522 0.461961 GGTCCAGCTCGCTCTAACAT 59.538 55.000 0.00 0.00 0.00 2.71
3384 10523 1.565305 GTCCAGCTCGCTCTAACATG 58.435 55.000 0.00 0.00 0.00 3.21
3385 10524 1.135139 GTCCAGCTCGCTCTAACATGA 59.865 52.381 0.00 0.00 0.00 3.07
3386 10525 2.034878 TCCAGCTCGCTCTAACATGAT 58.965 47.619 0.00 0.00 0.00 2.45
3387 10526 2.133553 CCAGCTCGCTCTAACATGATG 58.866 52.381 0.00 0.00 0.00 3.07
3388 10527 2.133553 CAGCTCGCTCTAACATGATGG 58.866 52.381 0.00 0.00 0.00 3.51
3389 10528 1.069823 AGCTCGCTCTAACATGATGGG 59.930 52.381 0.00 0.00 0.00 4.00
3390 10529 1.202580 GCTCGCTCTAACATGATGGGT 60.203 52.381 0.00 0.00 0.00 4.51
3391 10530 2.477825 CTCGCTCTAACATGATGGGTG 58.522 52.381 0.00 0.00 0.00 4.61
3392 10531 1.138859 TCGCTCTAACATGATGGGTGG 59.861 52.381 0.00 0.00 0.00 4.61
3393 10532 1.134401 CGCTCTAACATGATGGGTGGT 60.134 52.381 0.00 0.00 0.00 4.16
3394 10533 2.292267 GCTCTAACATGATGGGTGGTG 58.708 52.381 0.00 0.00 0.00 4.17
3395 10534 2.092968 GCTCTAACATGATGGGTGGTGA 60.093 50.000 0.00 0.00 0.00 4.02
3396 10535 3.801698 CTCTAACATGATGGGTGGTGAG 58.198 50.000 0.00 0.00 0.00 3.51
3397 10536 2.092968 TCTAACATGATGGGTGGTGAGC 60.093 50.000 0.00 0.00 0.00 4.26
3398 10537 0.700564 AACATGATGGGTGGTGAGCT 59.299 50.000 0.00 0.00 0.00 4.09
3399 10538 0.700564 ACATGATGGGTGGTGAGCTT 59.299 50.000 0.00 0.00 0.00 3.74
3400 10539 1.340405 ACATGATGGGTGGTGAGCTTC 60.340 52.381 0.00 0.00 0.00 3.86
3401 10540 0.257039 ATGATGGGTGGTGAGCTTCC 59.743 55.000 0.00 0.00 0.00 3.46
3402 10541 0.842030 TGATGGGTGGTGAGCTTCCT 60.842 55.000 9.68 0.00 0.00 3.36
3403 10542 0.329596 GATGGGTGGTGAGCTTCCTT 59.670 55.000 9.68 0.00 0.00 3.36
3404 10543 0.038744 ATGGGTGGTGAGCTTCCTTG 59.961 55.000 9.68 0.00 0.00 3.61
3405 10544 1.059584 TGGGTGGTGAGCTTCCTTGA 61.060 55.000 9.68 0.00 0.00 3.02
3406 10545 0.110486 GGGTGGTGAGCTTCCTTGAA 59.890 55.000 9.68 0.00 0.00 2.69
3407 10546 1.239347 GGTGGTGAGCTTCCTTGAAC 58.761 55.000 9.68 1.09 0.00 3.18
3408 10547 1.202818 GGTGGTGAGCTTCCTTGAACT 60.203 52.381 9.68 0.00 0.00 3.01
3409 10548 2.038557 GGTGGTGAGCTTCCTTGAACTA 59.961 50.000 9.68 0.00 0.00 2.24
3410 10549 3.307762 GGTGGTGAGCTTCCTTGAACTAT 60.308 47.826 9.68 0.00 0.00 2.12
3411 10550 4.327680 GTGGTGAGCTTCCTTGAACTATT 58.672 43.478 9.68 0.00 0.00 1.73
3412 10551 4.762251 GTGGTGAGCTTCCTTGAACTATTT 59.238 41.667 9.68 0.00 0.00 1.40
3413 10552 5.241728 GTGGTGAGCTTCCTTGAACTATTTT 59.758 40.000 9.68 0.00 0.00 1.82
3414 10553 5.833131 TGGTGAGCTTCCTTGAACTATTTTT 59.167 36.000 9.68 0.00 0.00 1.94
3437 10576 8.940768 TTTTTCTTCCAGTTTTCAATTCGATT 57.059 26.923 0.00 0.00 0.00 3.34
3438 10577 8.940768 TTTTCTTCCAGTTTTCAATTCGATTT 57.059 26.923 0.00 0.00 0.00 2.17
3441 10580 9.624697 TTCTTCCAGTTTTCAATTCGATTTATG 57.375 29.630 0.00 0.00 0.00 1.90
3442 10581 7.754924 TCTTCCAGTTTTCAATTCGATTTATGC 59.245 33.333 0.00 0.00 0.00 3.14
3443 10582 7.156876 TCCAGTTTTCAATTCGATTTATGCT 57.843 32.000 0.00 0.00 0.00 3.79
3444 10583 7.028962 TCCAGTTTTCAATTCGATTTATGCTG 58.971 34.615 0.00 0.00 0.00 4.41
3445 10584 7.028962 CCAGTTTTCAATTCGATTTATGCTGA 58.971 34.615 0.00 0.00 0.00 4.26
3446 10585 7.541783 CCAGTTTTCAATTCGATTTATGCTGAA 59.458 33.333 0.00 0.00 0.00 3.02
3447 10586 8.914654 CAGTTTTCAATTCGATTTATGCTGAAA 58.085 29.630 0.00 0.00 31.41 2.69
3448 10587 9.474920 AGTTTTCAATTCGATTTATGCTGAAAA 57.525 25.926 10.52 10.52 38.37 2.29
3451 10590 9.474920 TTTCAATTCGATTTATGCTGAAAAACT 57.525 25.926 0.00 0.00 30.61 2.66
3452 10591 8.451687 TCAATTCGATTTATGCTGAAAAACTG 57.548 30.769 0.00 0.00 0.00 3.16
3453 10592 7.541783 TCAATTCGATTTATGCTGAAAAACTGG 59.458 33.333 0.00 0.00 0.00 4.00
3454 10593 5.309323 TCGATTTATGCTGAAAAACTGGG 57.691 39.130 0.00 0.00 0.00 4.45
3455 10594 4.764823 TCGATTTATGCTGAAAAACTGGGT 59.235 37.500 0.00 0.00 0.00 4.51
3456 10595 4.858692 CGATTTATGCTGAAAAACTGGGTG 59.141 41.667 0.00 0.00 0.00 4.61
3457 10596 5.564651 CGATTTATGCTGAAAAACTGGGTGT 60.565 40.000 0.00 0.00 0.00 4.16
3458 10597 5.606348 TTTATGCTGAAAAACTGGGTGTT 57.394 34.783 0.00 0.00 41.29 3.32
3470 10609 5.952526 AACTGGGTGTTTATTCTTTACCG 57.047 39.130 0.00 0.00 34.84 4.02
3471 10610 4.329392 ACTGGGTGTTTATTCTTTACCGG 58.671 43.478 0.00 0.00 32.22 5.28
3472 10611 3.688235 TGGGTGTTTATTCTTTACCGGG 58.312 45.455 6.32 0.00 32.22 5.73
3473 10612 3.074242 TGGGTGTTTATTCTTTACCGGGT 59.926 43.478 6.32 4.46 32.22 5.28
3474 10613 4.081406 GGGTGTTTATTCTTTACCGGGTT 58.919 43.478 4.31 0.00 32.22 4.11
3475 10614 5.222007 TGGGTGTTTATTCTTTACCGGGTTA 60.222 40.000 4.31 0.00 32.22 2.85
3476 10615 5.709631 GGGTGTTTATTCTTTACCGGGTTAA 59.290 40.000 4.31 0.71 32.22 2.01
3477 10616 6.208402 GGGTGTTTATTCTTTACCGGGTTAAA 59.792 38.462 4.31 1.30 32.22 1.52
3478 10617 7.093814 GGGTGTTTATTCTTTACCGGGTTAAAT 60.094 37.037 4.31 3.35 32.22 1.40
3479 10618 8.955388 GGTGTTTATTCTTTACCGGGTTAAATA 58.045 33.333 4.31 0.00 0.00 1.40
3492 10631 8.766000 ACCGGGTTAAATATTTGAAATTGTTC 57.234 30.769 6.32 0.00 0.00 3.18
3493 10632 8.368668 ACCGGGTTAAATATTTGAAATTGTTCA 58.631 29.630 6.32 0.00 42.12 3.18
3494 10633 9.377312 CCGGGTTAAATATTTGAAATTGTTCAT 57.623 29.630 11.05 0.00 43.29 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.414700 CAAGGCTGGCACGTCGTC 61.415 66.667 3.38 0.00 0.00 4.20
13 14 4.988598 CCAAGGCTGGCACGTCGT 62.989 66.667 3.38 0.00 35.39 4.34
15 16 4.643387 ACCCAAGGCTGGCACGTC 62.643 66.667 3.38 0.00 41.99 4.34
16 17 4.954970 CACCCAAGGCTGGCACGT 62.955 66.667 3.38 0.00 41.99 4.49
21 22 4.684134 CACCCCACCCAAGGCTGG 62.684 72.222 0.00 0.00 43.10 4.85
22 23 3.868200 GACACCCCACCCAAGGCTG 62.868 68.421 0.00 0.00 0.00 4.85
23 24 3.580319 GACACCCCACCCAAGGCT 61.580 66.667 0.00 0.00 0.00 4.58
72 73 6.311935 CGTCAATTCCATTTCATGAGCAAAAT 59.688 34.615 0.00 0.00 0.00 1.82
73 74 5.634439 CGTCAATTCCATTTCATGAGCAAAA 59.366 36.000 0.00 0.00 0.00 2.44
312 2149 7.631822 TCAAGTGTTTGCAAATTTTCATCATG 58.368 30.769 16.21 8.86 34.21 3.07
314 2151 7.606858 TTCAAGTGTTTGCAAATTTTCATCA 57.393 28.000 16.21 3.64 34.21 3.07
326 2164 8.603181 ACTTTGACAAATATTTCAAGTGTTTGC 58.397 29.630 0.05 0.00 33.36 3.68
394 2237 8.390354 CAAATGAGCTCGAATGACAGTAAAATA 58.610 33.333 9.64 0.00 0.00 1.40
399 2242 5.072040 TCAAATGAGCTCGAATGACAGTA 57.928 39.130 9.64 0.00 0.00 2.74
400 2243 3.930336 TCAAATGAGCTCGAATGACAGT 58.070 40.909 9.64 0.00 0.00 3.55
401 2244 4.517641 CTCAAATGAGCTCGAATGACAG 57.482 45.455 9.64 0.00 35.13 3.51
509 2368 1.955080 ACGTCTACTACCCTATGCAGC 59.045 52.381 0.00 0.00 0.00 5.25
536 2400 3.726517 CTTGCTTCCGTGCGGTGG 61.727 66.667 10.60 5.97 36.47 4.61
541 2405 2.558313 GCAGTCTTGCTTCCGTGC 59.442 61.111 0.00 0.00 46.95 5.34
604 2504 6.571344 CGTCTTACATTATGAGATGGAGGGAG 60.571 46.154 0.00 0.00 0.00 4.30
605 2505 5.243954 CGTCTTACATTATGAGATGGAGGGA 59.756 44.000 0.00 0.00 0.00 4.20
606 2506 5.011125 ACGTCTTACATTATGAGATGGAGGG 59.989 44.000 0.00 0.00 34.85 4.30
607 2507 6.090483 ACGTCTTACATTATGAGATGGAGG 57.910 41.667 0.00 0.00 34.85 4.30
608 2508 8.425577 AAAACGTCTTACATTATGAGATGGAG 57.574 34.615 0.00 0.00 34.85 3.86
609 2509 8.786826 AAAAACGTCTTACATTATGAGATGGA 57.213 30.769 0.00 0.00 34.85 3.41
639 2539 5.823209 AACGTTTTTGGCACTAGTTTAGT 57.177 34.783 0.00 0.00 40.28 2.24
640 2540 7.697291 TGTAAAACGTTTTTGGCACTAGTTTAG 59.303 33.333 29.42 0.00 31.25 1.85
641 2541 7.533426 TGTAAAACGTTTTTGGCACTAGTTTA 58.467 30.769 29.42 5.81 31.25 2.01
642 2542 6.388278 TGTAAAACGTTTTTGGCACTAGTTT 58.612 32.000 29.42 4.99 32.58 2.66
643 2543 5.952033 TGTAAAACGTTTTTGGCACTAGTT 58.048 33.333 29.42 5.20 0.00 2.24
644 2544 5.564048 TGTAAAACGTTTTTGGCACTAGT 57.436 34.783 29.42 5.72 0.00 2.57
645 2545 8.635124 CATAATGTAAAACGTTTTTGGCACTAG 58.365 33.333 29.42 11.52 0.00 2.57
646 2546 7.595502 CCATAATGTAAAACGTTTTTGGCACTA 59.404 33.333 29.42 19.30 28.92 2.74
647 2547 6.422400 CCATAATGTAAAACGTTTTTGGCACT 59.578 34.615 29.42 18.01 28.92 4.40
648 2548 6.346999 CCCATAATGTAAAACGTTTTTGGCAC 60.347 38.462 29.42 21.20 32.38 5.01
649 2549 5.696724 CCCATAATGTAAAACGTTTTTGGCA 59.303 36.000 29.42 23.70 32.38 4.92
650 2550 5.927115 TCCCATAATGTAAAACGTTTTTGGC 59.073 36.000 29.42 19.64 32.38 4.52
651 2551 6.088350 CGTCCCATAATGTAAAACGTTTTTGG 59.912 38.462 29.42 26.11 32.97 3.28
652 2552 6.088350 CCGTCCCATAATGTAAAACGTTTTTG 59.912 38.462 29.42 19.75 0.00 2.44
653 2553 6.016443 TCCGTCCCATAATGTAAAACGTTTTT 60.016 34.615 29.42 15.16 0.00 1.94
654 2554 5.472820 TCCGTCCCATAATGTAAAACGTTTT 59.527 36.000 27.65 27.65 0.00 2.43
655 2555 5.002516 TCCGTCCCATAATGTAAAACGTTT 58.997 37.500 7.96 7.96 0.00 3.60
656 2556 4.577875 TCCGTCCCATAATGTAAAACGTT 58.422 39.130 0.00 0.00 0.00 3.99
657 2557 4.186159 CTCCGTCCCATAATGTAAAACGT 58.814 43.478 0.00 0.00 0.00 3.99
658 2558 3.558418 CCTCCGTCCCATAATGTAAAACG 59.442 47.826 0.00 0.00 0.00 3.60
659 2559 3.881089 CCCTCCGTCCCATAATGTAAAAC 59.119 47.826 0.00 0.00 0.00 2.43
660 2560 3.781407 TCCCTCCGTCCCATAATGTAAAA 59.219 43.478 0.00 0.00 0.00 1.52
661 2561 3.386063 TCCCTCCGTCCCATAATGTAAA 58.614 45.455 0.00 0.00 0.00 2.01
662 2562 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
663 2563 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
664 2564 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
665 2565 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
666 2566 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
667 2567 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
668 2568 3.339713 AATTACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
669 2569 2.191981 AATTACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
670 2570 1.961133 AAATTACTCCCTCCGTCCCA 58.039 50.000 0.00 0.00 0.00 4.37
671 2571 2.504585 AGAAAATTACTCCCTCCGTCCC 59.495 50.000 0.00 0.00 0.00 4.46
672 2572 3.451540 AGAGAAAATTACTCCCTCCGTCC 59.548 47.826 8.37 0.00 35.27 4.79
673 2573 4.739587 AGAGAAAATTACTCCCTCCGTC 57.260 45.455 8.37 0.00 35.27 4.79
674 2574 6.809976 ATTAGAGAAAATTACTCCCTCCGT 57.190 37.500 8.37 0.00 35.27 4.69
675 2575 9.609346 TTTTATTAGAGAAAATTACTCCCTCCG 57.391 33.333 8.37 0.00 35.27 4.63
678 2578 9.975218 TGCTTTTATTAGAGAAAATTACTCCCT 57.025 29.630 8.37 0.00 35.27 4.20
704 2614 3.764972 TGTGTGCATGAATGATCAACCAT 59.235 39.130 0.00 3.33 39.49 3.55
706 2616 3.057386 TGTGTGTGCATGAATGATCAACC 60.057 43.478 0.00 0.00 39.49 3.77
734 2645 8.195617 TCCACATTTTTCATTTCAAAAGTGTC 57.804 30.769 4.41 0.00 41.60 3.67
739 2941 6.118170 TGGCTCCACATTTTTCATTTCAAAA 58.882 32.000 0.00 0.00 0.00 2.44
895 3147 6.197903 TCTGTCTATATACTCCCATCCCATG 58.802 44.000 0.00 0.00 0.00 3.66
896 3148 6.423358 TCTGTCTATATACTCCCATCCCAT 57.577 41.667 0.00 0.00 0.00 4.00
897 3149 5.281769 CCTCTGTCTATATACTCCCATCCCA 60.282 48.000 0.00 0.00 0.00 4.37
899 3151 4.647399 GCCTCTGTCTATATACTCCCATCC 59.353 50.000 0.00 0.00 0.00 3.51
926 3178 1.056660 GTGTGGGGAGAGTCAAGGAA 58.943 55.000 0.00 0.00 0.00 3.36
969 3221 4.553742 CGATGAGTTCCTGATCACTAGTCG 60.554 50.000 0.00 0.00 0.00 4.18
974 3226 4.019858 TCTTCGATGAGTTCCTGATCACT 58.980 43.478 0.00 0.00 0.00 3.41
979 3231 6.098266 TCCATTAATCTTCGATGAGTTCCTGA 59.902 38.462 6.58 0.00 0.00 3.86
980 3232 6.283694 TCCATTAATCTTCGATGAGTTCCTG 58.716 40.000 6.58 3.12 0.00 3.86
983 3253 7.655328 AGTCATCCATTAATCTTCGATGAGTTC 59.345 37.037 6.58 4.59 39.47 3.01
1239 3892 2.579201 CAGCCGAGGACGTGGAAT 59.421 61.111 0.00 0.00 37.88 3.01
1695 4348 0.762418 TCATCTTCCACACCAACGGT 59.238 50.000 0.00 0.00 35.62 4.83
1785 4438 2.326897 CGCTGCAGAATCATGGCG 59.673 61.111 20.43 8.27 36.89 5.69
1899 4561 2.833582 CCGGCGAGGAGGAAGCTA 60.834 66.667 9.30 0.00 45.00 3.32
2019 5174 0.324368 TCAGGTGCTCGTAGGTGGAT 60.324 55.000 0.00 0.00 0.00 3.41
2160 5315 0.109458 GGTACATCACGCGTGACTCA 60.109 55.000 41.29 25.98 43.11 3.41
2577 9361 5.612688 AGATGCCCTTAGATCCCTTCAAATA 59.387 40.000 0.00 0.00 0.00 1.40
2628 9412 3.005898 CGTCCACGGAATGATGCG 58.994 61.111 0.00 0.00 46.87 4.73
2647 9772 1.351683 AGTGTCCGTGGACTAGTCTCT 59.648 52.381 21.88 5.90 44.80 3.10
2698 9823 8.635765 ATTCTAACACTGGTTGAAATGTATGT 57.364 30.769 0.00 0.00 37.88 2.29
2727 9852 4.023783 CGGTTTACATAAATTTCGTCCGC 58.976 43.478 0.00 0.00 0.00 5.54
2811 9938 6.242508 ACGGCTTTTCTTCTTCTAAATGTC 57.757 37.500 0.00 0.00 0.00 3.06
2830 9962 0.537828 TGGTTTAGGGTTGGAACGGC 60.538 55.000 0.00 0.00 0.00 5.68
2838 9970 3.951680 CGCCATAAGATTGGTTTAGGGTT 59.048 43.478 0.00 0.00 39.11 4.11
2936 10068 8.031864 AGCTTCACTTCATCGGTCTTATATATG 58.968 37.037 0.00 0.00 0.00 1.78
2940 10072 5.221263 GGAGCTTCACTTCATCGGTCTTATA 60.221 44.000 0.00 0.00 0.00 0.98
2972 10104 2.455032 CATGTTCTACTCTTCCTCGCG 58.545 52.381 0.00 0.00 0.00 5.87
3005 10139 1.153046 CCTTGTGTCCCACGTGGTT 60.153 57.895 31.80 0.00 37.14 3.67
3006 10140 2.508928 CCTTGTGTCCCACGTGGT 59.491 61.111 31.80 0.00 37.14 4.16
3027 10161 1.075970 TAGGGCATGAGAGGCGTCT 60.076 57.895 9.04 9.04 34.86 4.18
3029 10163 0.978146 AAGTAGGGCATGAGAGGCGT 60.978 55.000 0.00 0.00 36.16 5.68
3048 10186 1.000163 GTGCAGTCTCCTTCGAGAACA 60.000 52.381 0.00 0.00 46.74 3.18
3056 10194 4.809070 GCAAGGTGCAGTCTCCTT 57.191 55.556 0.56 0.56 44.53 3.36
3073 10211 4.082523 ACATCCACCAGCGACGGG 62.083 66.667 0.00 0.00 0.00 5.28
3100 10238 2.202597 CGGCGCCGCAATTTCATT 60.203 55.556 38.48 0.00 0.00 2.57
3147 10286 7.676572 GCCTCCTAAATATCAACGACAAACTTC 60.677 40.741 0.00 0.00 0.00 3.01
3219 10358 2.200170 GACATGCAAACAGGCCGACC 62.200 60.000 0.00 0.00 0.00 4.79
3221 10360 2.324330 CGACATGCAAACAGGCCGA 61.324 57.895 0.00 0.00 0.00 5.54
3222 10361 2.176546 CGACATGCAAACAGGCCG 59.823 61.111 0.00 0.00 0.00 6.13
3232 10371 1.268234 GCCATAACTGAAGCGACATGC 60.268 52.381 0.00 0.00 46.98 4.06
3233 10372 1.331756 GGCCATAACTGAAGCGACATG 59.668 52.381 0.00 0.00 0.00 3.21
3234 10373 1.210478 AGGCCATAACTGAAGCGACAT 59.790 47.619 5.01 0.00 0.00 3.06
3235 10374 0.613260 AGGCCATAACTGAAGCGACA 59.387 50.000 5.01 0.00 0.00 4.35
3236 10375 1.291132 GAGGCCATAACTGAAGCGAC 58.709 55.000 5.01 0.00 0.00 5.19
3237 10376 0.901827 TGAGGCCATAACTGAAGCGA 59.098 50.000 5.01 0.00 0.00 4.93
3238 10377 1.398390 GTTGAGGCCATAACTGAAGCG 59.602 52.381 5.01 0.00 0.00 4.68
3239 10378 2.716217 AGTTGAGGCCATAACTGAAGC 58.284 47.619 20.01 0.00 35.91 3.86
3240 10379 6.599244 TCAATTAGTTGAGGCCATAACTGAAG 59.401 38.462 26.05 17.62 39.36 3.02
3241 10380 6.374333 GTCAATTAGTTGAGGCCATAACTGAA 59.626 38.462 26.05 18.31 44.58 3.02
3242 10381 5.880332 GTCAATTAGTTGAGGCCATAACTGA 59.120 40.000 26.05 20.96 44.58 3.41
3243 10382 5.220662 CGTCAATTAGTTGAGGCCATAACTG 60.221 44.000 26.05 15.01 44.58 3.16
3244 10383 4.876107 CGTCAATTAGTTGAGGCCATAACT 59.124 41.667 22.94 22.94 44.58 2.24
3245 10384 5.156804 CGTCAATTAGTTGAGGCCATAAC 57.843 43.478 5.01 9.94 44.58 1.89
3253 10392 4.386049 GGTCAGTGACGTCAATTAGTTGAG 59.614 45.833 21.95 5.32 44.58 3.02
3254 10393 4.304110 GGTCAGTGACGTCAATTAGTTGA 58.696 43.478 21.95 9.41 36.37 3.18
3255 10394 3.121279 CGGTCAGTGACGTCAATTAGTTG 59.879 47.826 21.95 6.89 33.38 3.16
3256 10395 3.243636 ACGGTCAGTGACGTCAATTAGTT 60.244 43.478 21.95 0.00 39.40 2.24
3257 10396 2.295349 ACGGTCAGTGACGTCAATTAGT 59.705 45.455 21.95 12.58 39.40 2.24
3258 10397 2.942710 ACGGTCAGTGACGTCAATTAG 58.057 47.619 21.95 8.50 39.40 1.73
3260 10399 3.980583 ACGGTCAGTGACGTCAATT 57.019 47.368 21.95 9.04 39.40 2.32
3266 10405 3.211803 TCTATTTGACGGTCAGTGACG 57.788 47.619 16.89 14.02 32.65 4.35
3267 10406 3.927142 CCTTCTATTTGACGGTCAGTGAC 59.073 47.826 15.24 15.24 30.26 3.67
3268 10407 3.576982 ACCTTCTATTTGACGGTCAGTGA 59.423 43.478 11.14 5.78 42.83 3.41
3269 10408 3.926616 ACCTTCTATTTGACGGTCAGTG 58.073 45.455 11.14 3.62 42.83 3.66
3275 10414 4.500035 GCCTAGAGACCTTCTATTTGACGG 60.500 50.000 0.00 0.00 37.75 4.79
3276 10415 4.612943 GCCTAGAGACCTTCTATTTGACG 58.387 47.826 0.00 0.00 37.75 4.35
3277 10416 4.338682 TCGCCTAGAGACCTTCTATTTGAC 59.661 45.833 0.00 0.00 37.75 3.18
3278 10417 4.533815 TCGCCTAGAGACCTTCTATTTGA 58.466 43.478 0.00 0.00 37.75 2.69
3279 10418 4.920640 TCGCCTAGAGACCTTCTATTTG 57.079 45.455 0.00 0.00 37.75 2.32
3292 10431 5.505819 CGTCATACAAGAAATCTCGCCTAGA 60.506 44.000 0.00 0.00 39.02 2.43
3293 10432 4.677378 CGTCATACAAGAAATCTCGCCTAG 59.323 45.833 0.00 0.00 0.00 3.02
3294 10433 4.607955 CGTCATACAAGAAATCTCGCCTA 58.392 43.478 0.00 0.00 0.00 3.93
3295 10434 3.448686 CGTCATACAAGAAATCTCGCCT 58.551 45.455 0.00 0.00 0.00 5.52
3296 10435 2.033662 GCGTCATACAAGAAATCTCGCC 60.034 50.000 0.00 0.00 36.10 5.54
3297 10436 2.860735 AGCGTCATACAAGAAATCTCGC 59.139 45.455 0.00 0.00 41.11 5.03
3298 10437 3.487574 GGAGCGTCATACAAGAAATCTCG 59.512 47.826 0.00 0.00 0.00 4.04
3299 10438 4.688021 AGGAGCGTCATACAAGAAATCTC 58.312 43.478 0.00 0.00 0.00 2.75
3300 10439 4.744795 AGGAGCGTCATACAAGAAATCT 57.255 40.909 0.00 0.00 0.00 2.40
3301 10440 4.494855 GCAAGGAGCGTCATACAAGAAATC 60.495 45.833 0.00 0.00 0.00 2.17
3302 10441 3.375299 GCAAGGAGCGTCATACAAGAAAT 59.625 43.478 0.00 0.00 0.00 2.17
3303 10442 2.742053 GCAAGGAGCGTCATACAAGAAA 59.258 45.455 0.00 0.00 0.00 2.52
3304 10443 2.346803 GCAAGGAGCGTCATACAAGAA 58.653 47.619 0.00 0.00 0.00 2.52
3305 10444 2.010145 GCAAGGAGCGTCATACAAGA 57.990 50.000 0.00 0.00 0.00 3.02
3316 10455 2.742053 TCAACTTTATGACGCAAGGAGC 59.258 45.455 0.00 0.00 46.39 4.70
3317 10456 3.372206 CCTCAACTTTATGACGCAAGGAG 59.628 47.826 0.00 0.00 46.39 3.69
3318 10457 3.334691 CCTCAACTTTATGACGCAAGGA 58.665 45.455 0.00 0.00 46.39 3.36
3319 10458 2.159517 GCCTCAACTTTATGACGCAAGG 60.160 50.000 0.00 0.00 46.39 3.61
3321 10460 2.778299 AGCCTCAACTTTATGACGCAA 58.222 42.857 0.00 0.00 34.89 4.85
3322 10461 2.472695 AGCCTCAACTTTATGACGCA 57.527 45.000 0.00 0.00 34.89 5.24
3323 10462 3.303395 GCATAGCCTCAACTTTATGACGC 60.303 47.826 0.00 0.00 33.31 5.19
3324 10463 4.025396 CAGCATAGCCTCAACTTTATGACG 60.025 45.833 0.00 0.00 0.00 4.35
3325 10464 4.274459 CCAGCATAGCCTCAACTTTATGAC 59.726 45.833 0.00 0.00 0.00 3.06
3326 10465 4.164030 TCCAGCATAGCCTCAACTTTATGA 59.836 41.667 0.00 0.00 0.00 2.15
3327 10466 4.454678 TCCAGCATAGCCTCAACTTTATG 58.545 43.478 0.00 0.00 0.00 1.90
3328 10467 4.445448 CCTCCAGCATAGCCTCAACTTTAT 60.445 45.833 0.00 0.00 0.00 1.40
3329 10468 3.118261 CCTCCAGCATAGCCTCAACTTTA 60.118 47.826 0.00 0.00 0.00 1.85
3330 10469 2.356535 CCTCCAGCATAGCCTCAACTTT 60.357 50.000 0.00 0.00 0.00 2.66
3331 10470 1.211457 CCTCCAGCATAGCCTCAACTT 59.789 52.381 0.00 0.00 0.00 2.66
3332 10471 0.835941 CCTCCAGCATAGCCTCAACT 59.164 55.000 0.00 0.00 0.00 3.16
3333 10472 0.817229 GCCTCCAGCATAGCCTCAAC 60.817 60.000 0.00 0.00 42.97 3.18
3334 10473 1.528824 GCCTCCAGCATAGCCTCAA 59.471 57.895 0.00 0.00 42.97 3.02
3335 10474 3.234349 GCCTCCAGCATAGCCTCA 58.766 61.111 0.00 0.00 42.97 3.86
3351 10490 0.107945 CTGGACCACTAGGCTTGAGC 60.108 60.000 2.20 0.00 39.06 4.26
3352 10491 0.107945 GCTGGACCACTAGGCTTGAG 60.108 60.000 2.20 0.00 39.06 3.02
3353 10492 0.545309 AGCTGGACCACTAGGCTTGA 60.545 55.000 2.20 0.00 39.06 3.02
3354 10493 0.107945 GAGCTGGACCACTAGGCTTG 60.108 60.000 7.34 0.00 39.06 4.01
3355 10494 1.608717 CGAGCTGGACCACTAGGCTT 61.609 60.000 7.34 0.00 39.06 4.35
3356 10495 2.055042 CGAGCTGGACCACTAGGCT 61.055 63.158 5.68 5.68 39.06 4.58
3357 10496 2.496817 CGAGCTGGACCACTAGGC 59.503 66.667 0.00 0.00 39.06 3.93
3358 10497 2.010582 GAGCGAGCTGGACCACTAGG 62.011 65.000 0.84 0.00 42.21 3.02
3359 10498 1.034838 AGAGCGAGCTGGACCACTAG 61.035 60.000 0.84 0.00 0.00 2.57
3360 10499 0.255033 TAGAGCGAGCTGGACCACTA 59.745 55.000 0.84 0.00 0.00 2.74
3361 10500 0.612174 TTAGAGCGAGCTGGACCACT 60.612 55.000 0.84 0.00 0.00 4.00
3362 10501 0.458716 GTTAGAGCGAGCTGGACCAC 60.459 60.000 0.84 0.00 0.00 4.16
3363 10502 0.898326 TGTTAGAGCGAGCTGGACCA 60.898 55.000 0.84 0.00 0.00 4.02
3364 10503 0.461961 ATGTTAGAGCGAGCTGGACC 59.538 55.000 0.84 0.00 0.00 4.46
3365 10504 1.135139 TCATGTTAGAGCGAGCTGGAC 59.865 52.381 0.84 0.00 0.00 4.02
3366 10505 1.474330 TCATGTTAGAGCGAGCTGGA 58.526 50.000 0.84 0.00 0.00 3.86
3367 10506 2.133553 CATCATGTTAGAGCGAGCTGG 58.866 52.381 0.84 0.00 0.00 4.85
3368 10507 2.133553 CCATCATGTTAGAGCGAGCTG 58.866 52.381 0.84 0.00 0.00 4.24
3369 10508 1.069823 CCCATCATGTTAGAGCGAGCT 59.930 52.381 0.00 0.00 0.00 4.09
3370 10509 1.202580 ACCCATCATGTTAGAGCGAGC 60.203 52.381 0.00 0.00 0.00 5.03
3371 10510 2.477825 CACCCATCATGTTAGAGCGAG 58.522 52.381 0.00 0.00 0.00 5.03
3372 10511 1.138859 CCACCCATCATGTTAGAGCGA 59.861 52.381 0.00 0.00 0.00 4.93
3373 10512 1.134401 ACCACCCATCATGTTAGAGCG 60.134 52.381 0.00 0.00 0.00 5.03
3374 10513 2.092968 TCACCACCCATCATGTTAGAGC 60.093 50.000 0.00 0.00 0.00 4.09
3375 10514 3.801698 CTCACCACCCATCATGTTAGAG 58.198 50.000 0.00 0.00 0.00 2.43
3376 10515 2.092968 GCTCACCACCCATCATGTTAGA 60.093 50.000 0.00 0.00 0.00 2.10
3377 10516 2.092753 AGCTCACCACCCATCATGTTAG 60.093 50.000 0.00 0.00 0.00 2.34
3378 10517 1.915489 AGCTCACCACCCATCATGTTA 59.085 47.619 0.00 0.00 0.00 2.41
3379 10518 0.700564 AGCTCACCACCCATCATGTT 59.299 50.000 0.00 0.00 0.00 2.71
3380 10519 0.700564 AAGCTCACCACCCATCATGT 59.299 50.000 0.00 0.00 0.00 3.21
3381 10520 1.386533 GAAGCTCACCACCCATCATG 58.613 55.000 0.00 0.00 0.00 3.07
3382 10521 0.257039 GGAAGCTCACCACCCATCAT 59.743 55.000 5.21 0.00 0.00 2.45
3383 10522 0.842030 AGGAAGCTCACCACCCATCA 60.842 55.000 11.59 0.00 0.00 3.07
3384 10523 0.329596 AAGGAAGCTCACCACCCATC 59.670 55.000 11.59 0.00 0.00 3.51
3385 10524 0.038744 CAAGGAAGCTCACCACCCAT 59.961 55.000 11.59 0.00 0.00 4.00
3386 10525 1.059584 TCAAGGAAGCTCACCACCCA 61.060 55.000 11.59 0.00 0.00 4.51
3387 10526 0.110486 TTCAAGGAAGCTCACCACCC 59.890 55.000 11.59 0.00 0.00 4.61
3388 10527 1.202818 AGTTCAAGGAAGCTCACCACC 60.203 52.381 11.59 0.32 0.00 4.61
3389 10528 2.262423 AGTTCAAGGAAGCTCACCAC 57.738 50.000 11.59 2.43 0.00 4.16
3390 10529 4.640771 AATAGTTCAAGGAAGCTCACCA 57.359 40.909 11.59 0.00 0.00 4.17
3391 10530 5.966742 AAAATAGTTCAAGGAAGCTCACC 57.033 39.130 2.14 2.14 0.00 4.02
3412 10551 8.940768 AATCGAATTGAAAACTGGAAGAAAAA 57.059 26.923 0.00 0.00 37.43 1.94
3413 10552 8.940768 AAATCGAATTGAAAACTGGAAGAAAA 57.059 26.923 0.00 0.00 37.43 2.29
3415 10554 9.624697 CATAAATCGAATTGAAAACTGGAAGAA 57.375 29.630 0.00 0.00 37.43 2.52
3416 10555 7.754924 GCATAAATCGAATTGAAAACTGGAAGA 59.245 33.333 0.00 0.00 37.43 2.87
3417 10556 7.756722 AGCATAAATCGAATTGAAAACTGGAAG 59.243 33.333 0.00 0.00 42.29 3.46
3418 10557 7.541783 CAGCATAAATCGAATTGAAAACTGGAA 59.458 33.333 0.00 0.00 0.00 3.53
3419 10558 7.028962 CAGCATAAATCGAATTGAAAACTGGA 58.971 34.615 0.00 0.00 0.00 3.86
3420 10559 7.028962 TCAGCATAAATCGAATTGAAAACTGG 58.971 34.615 0.00 0.00 0.00 4.00
3421 10560 8.451687 TTCAGCATAAATCGAATTGAAAACTG 57.548 30.769 0.00 0.00 0.00 3.16
3422 10561 9.474920 TTTTCAGCATAAATCGAATTGAAAACT 57.525 25.926 6.10 0.00 37.83 2.66
3425 10564 9.474920 AGTTTTTCAGCATAAATCGAATTGAAA 57.525 25.926 0.00 0.00 32.94 2.69
3426 10565 8.914654 CAGTTTTTCAGCATAAATCGAATTGAA 58.085 29.630 0.00 0.00 0.00 2.69
3427 10566 7.541783 CCAGTTTTTCAGCATAAATCGAATTGA 59.458 33.333 0.00 0.00 0.00 2.57
3428 10567 7.201461 CCCAGTTTTTCAGCATAAATCGAATTG 60.201 37.037 0.00 0.00 0.00 2.32
3429 10568 6.813152 CCCAGTTTTTCAGCATAAATCGAATT 59.187 34.615 0.00 0.00 0.00 2.17
3430 10569 6.071391 ACCCAGTTTTTCAGCATAAATCGAAT 60.071 34.615 0.00 0.00 0.00 3.34
3431 10570 5.242838 ACCCAGTTTTTCAGCATAAATCGAA 59.757 36.000 0.00 0.00 0.00 3.71
3432 10571 4.764823 ACCCAGTTTTTCAGCATAAATCGA 59.235 37.500 0.00 0.00 0.00 3.59
3433 10572 4.858692 CACCCAGTTTTTCAGCATAAATCG 59.141 41.667 0.00 0.00 0.00 3.34
3434 10573 5.783111 ACACCCAGTTTTTCAGCATAAATC 58.217 37.500 0.00 0.00 0.00 2.17
3435 10574 5.806654 ACACCCAGTTTTTCAGCATAAAT 57.193 34.783 0.00 0.00 0.00 1.40
3436 10575 5.606348 AACACCCAGTTTTTCAGCATAAA 57.394 34.783 0.00 0.00 37.03 1.40
3448 10587 4.763279 CCGGTAAAGAATAAACACCCAGTT 59.237 41.667 0.00 0.00 43.89 3.16
3449 10588 4.329392 CCGGTAAAGAATAAACACCCAGT 58.671 43.478 0.00 0.00 0.00 4.00
3450 10589 3.692593 CCCGGTAAAGAATAAACACCCAG 59.307 47.826 0.00 0.00 0.00 4.45
3451 10590 3.074242 ACCCGGTAAAGAATAAACACCCA 59.926 43.478 0.00 0.00 0.00 4.51
3452 10591 3.689347 ACCCGGTAAAGAATAAACACCC 58.311 45.455 0.00 0.00 0.00 4.61
3453 10592 6.816134 TTAACCCGGTAAAGAATAAACACC 57.184 37.500 0.00 0.00 0.00 4.16
3466 10605 9.857957 GAACAATTTCAAATATTTAACCCGGTA 57.142 29.630 0.00 0.00 0.00 4.02
3467 10606 8.368668 TGAACAATTTCAAATATTTAACCCGGT 58.631 29.630 0.00 0.00 38.87 5.28
3468 10607 8.764524 TGAACAATTTCAAATATTTAACCCGG 57.235 30.769 0.00 0.00 38.87 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.