Multiple sequence alignment - TraesCS2B01G561400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G561400 chr2B 100.000 2267 0 0 1 2267 754003653 754005919 0.000000e+00 4187.0
1 TraesCS2B01G561400 chr2B 85.942 939 78 18 702 1599 754010674 754011599 0.000000e+00 953.0
2 TraesCS2B01G561400 chr2B 82.965 951 76 27 624 1531 753988170 753989077 0.000000e+00 780.0
3 TraesCS2B01G561400 chr2B 95.187 374 17 1 214 586 25447661 25447288 6.970000e-165 590.0
4 TraesCS2B01G561400 chr2B 81.250 688 85 27 915 1574 754342716 754343387 1.200000e-142 516.0
5 TraesCS2B01G561400 chr2B 80.945 614 73 21 713 1304 754015691 754016282 1.600000e-121 446.0
6 TraesCS2B01G561400 chr2B 84.807 441 31 14 1350 1788 754014152 754014558 5.830000e-111 411.0
7 TraesCS2B01G561400 chr2B 96.070 229 5 4 6 233 759679966 759679741 9.890000e-99 370.0
8 TraesCS2B01G561400 chr2B 90.000 270 18 4 1597 1862 753989071 753989335 7.760000e-90 340.0
9 TraesCS2B01G561400 chr2B 84.426 244 24 7 1191 1423 754550503 754550743 6.300000e-56 228.0
10 TraesCS2B01G561400 chr2B 89.820 167 15 2 1668 1833 754011600 754011765 1.760000e-51 213.0
11 TraesCS2B01G561400 chr2A 85.004 1167 111 31 585 1728 748534594 748535719 0.000000e+00 1127.0
12 TraesCS2B01G561400 chr2A 84.451 984 108 29 763 1726 748558072 748559030 0.000000e+00 928.0
13 TraesCS2B01G561400 chr2A 83.064 803 86 18 788 1541 748542096 748542897 0.000000e+00 684.0
14 TraesCS2B01G561400 chr2A 85.366 656 59 16 657 1281 748550262 748550911 0.000000e+00 645.0
15 TraesCS2B01G561400 chr2A 81.551 748 92 26 763 1492 748688291 748689010 1.950000e-160 575.0
16 TraesCS2B01G561400 chr2A 98.113 212 4 0 3 214 712292279 712292490 9.890000e-99 370.0
17 TraesCS2B01G561400 chr2A 75.590 848 128 36 889 1684 748559893 748560713 1.670000e-91 346.0
18 TraesCS2B01G561400 chr2A 81.443 388 40 5 1586 1973 748542897 748543252 2.850000e-74 289.0
19 TraesCS2B01G561400 chr2A 82.320 362 31 17 1349 1708 748529614 748529944 1.330000e-72 283.0
20 TraesCS2B01G561400 chr2A 84.064 251 27 7 1723 1967 748558997 748559240 1.750000e-56 230.0
21 TraesCS2B01G561400 chr2A 100.000 29 0 0 2188 2216 46083960 46083988 1.000000e-03 54.7
22 TraesCS2B01G561400 chr2D 81.502 1065 115 48 713 1752 618060449 618061456 0.000000e+00 800.0
23 TraesCS2B01G561400 chr2D 83.919 740 80 11 585 1286 618003659 618004397 0.000000e+00 671.0
24 TraesCS2B01G561400 chr2D 75.248 808 115 55 1183 1918 588529930 588530724 2.830000e-79 305.0
25 TraesCS2B01G561400 chr2D 86.081 273 32 3 1001 1267 617973052 617973324 2.850000e-74 289.0
26 TraesCS2B01G561400 chr2D 86.885 122 10 3 590 705 617995865 617995986 5.080000e-27 132.0
27 TraesCS2B01G561400 chr1B 89.221 603 36 16 6 585 84359537 84358941 0.000000e+00 726.0
28 TraesCS2B01G561400 chr1B 96.070 229 5 4 6 233 62249387 62249162 9.890000e-99 370.0
29 TraesCS2B01G561400 chr1B 96.070 229 5 4 6 233 280212976 280212751 9.890000e-99 370.0
30 TraesCS2B01G561400 chr5B 95.664 369 14 2 214 580 585039118 585039486 1.940000e-165 592.0
31 TraesCS2B01G561400 chr5B 95.200 375 16 2 214 587 605811623 605811996 1.940000e-165 592.0
32 TraesCS2B01G561400 chr5B 95.652 368 15 1 214 580 567437218 567437585 6.970000e-165 590.0
33 TraesCS2B01G561400 chr5B 96.070 229 5 4 6 233 446584438 446584213 9.890000e-99 370.0
34 TraesCS2B01G561400 chr5A 95.187 374 16 2 214 585 17415507 17415134 6.970000e-165 590.0
35 TraesCS2B01G561400 chr5A 98.113 212 4 0 3 214 567253198 567253409 9.890000e-99 370.0
36 TraesCS2B01G561400 chr5A 96.875 32 1 0 2188 2219 157853056 157853025 1.000000e-03 54.7
37 TraesCS2B01G561400 chr5A 96.875 32 1 0 2188 2219 284995525 284995494 1.000000e-03 54.7
38 TraesCS2B01G561400 chr5A 96.875 32 1 0 2188 2219 412264956 412264925 1.000000e-03 54.7
39 TraesCS2B01G561400 chr6B 95.380 368 16 1 214 580 717700552 717700919 3.240000e-163 584.0
40 TraesCS2B01G561400 chr6B 97.642 212 5 0 3 214 113845454 113845665 4.600000e-97 364.0
41 TraesCS2B01G561400 chr3B 94.652 374 20 0 214 587 768104376 768104003 4.200000e-162 580.0
42 TraesCS2B01G561400 chr3B 93.979 382 21 2 214 594 829475133 829475513 5.430000e-161 577.0
43 TraesCS2B01G561400 chrUn 98.113 212 4 0 3 214 23146018 23146229 9.890000e-99 370.0
44 TraesCS2B01G561400 chr4A 95.633 229 6 4 6 233 594743798 594743573 4.600000e-97 364.0
45 TraesCS2B01G561400 chr4A 92.308 39 3 0 2178 2216 521138114 521138152 3.150000e-04 56.5
46 TraesCS2B01G561400 chr4A 100.000 29 0 0 2188 2216 252534639 252534667 1.000000e-03 54.7
47 TraesCS2B01G561400 chr6A 100.000 29 0 0 2188 2216 221923841 221923869 1.000000e-03 54.7
48 TraesCS2B01G561400 chr6A 100.000 29 0 0 2188 2216 233118293 233118321 1.000000e-03 54.7
49 TraesCS2B01G561400 chr6A 100.000 28 0 0 2189 2216 332771016 332771043 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G561400 chr2B 754003653 754005919 2266 False 4187.000000 4187 100.000000 1 2267 1 chr2B.!!$F1 2266
1 TraesCS2B01G561400 chr2B 753988170 753989335 1165 False 560.000000 780 86.482500 624 1862 2 chr2B.!!$F4 1238
2 TraesCS2B01G561400 chr2B 754342716 754343387 671 False 516.000000 516 81.250000 915 1574 1 chr2B.!!$F2 659
3 TraesCS2B01G561400 chr2B 754010674 754016282 5608 False 505.750000 953 85.378500 702 1833 4 chr2B.!!$F5 1131
4 TraesCS2B01G561400 chr2A 748534594 748535719 1125 False 1127.000000 1127 85.004000 585 1728 1 chr2A.!!$F4 1143
5 TraesCS2B01G561400 chr2A 748550262 748550911 649 False 645.000000 645 85.366000 657 1281 1 chr2A.!!$F5 624
6 TraesCS2B01G561400 chr2A 748688291 748689010 719 False 575.000000 575 81.551000 763 1492 1 chr2A.!!$F6 729
7 TraesCS2B01G561400 chr2A 748558072 748560713 2641 False 501.333333 928 81.368333 763 1967 3 chr2A.!!$F8 1204
8 TraesCS2B01G561400 chr2A 748542096 748543252 1156 False 486.500000 684 82.253500 788 1973 2 chr2A.!!$F7 1185
9 TraesCS2B01G561400 chr2D 618060449 618061456 1007 False 800.000000 800 81.502000 713 1752 1 chr2D.!!$F5 1039
10 TraesCS2B01G561400 chr2D 618003659 618004397 738 False 671.000000 671 83.919000 585 1286 1 chr2D.!!$F4 701
11 TraesCS2B01G561400 chr2D 588529930 588530724 794 False 305.000000 305 75.248000 1183 1918 1 chr2D.!!$F1 735
12 TraesCS2B01G561400 chr1B 84358941 84359537 596 True 726.000000 726 89.221000 6 585 1 chr1B.!!$R2 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 319 0.179092 GCAGCCTTGCCATTGATTCC 60.179 55.0 0.0 0.0 44.74 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2162 7889 0.104934 ATGAAGTAGGCCGAGGGGAT 60.105 55.0 0.0 0.0 34.06 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 4.194720 CTCGTCTCCGGGGAAGCG 62.195 72.222 13.03 10.38 33.95 4.68
89 90 4.065281 CGTCTCCGGGGAAGCGTT 62.065 66.667 5.00 0.00 0.00 4.84
90 91 2.125633 GTCTCCGGGGAAGCGTTC 60.126 66.667 5.00 0.00 0.00 3.95
91 92 2.283676 TCTCCGGGGAAGCGTTCT 60.284 61.111 0.00 0.00 0.00 3.01
92 93 2.125512 CTCCGGGGAAGCGTTCTG 60.126 66.667 0.00 0.00 0.00 3.02
93 94 4.388499 TCCGGGGAAGCGTTCTGC 62.388 66.667 0.00 0.00 46.98 4.26
102 103 4.166011 GCGTTCTGCCATGGCGAC 62.166 66.667 30.87 25.40 45.51 5.19
103 104 3.853330 CGTTCTGCCATGGCGACG 61.853 66.667 31.63 31.63 45.51 5.12
104 105 3.499737 GTTCTGCCATGGCGACGG 61.500 66.667 30.87 19.88 45.51 4.79
137 138 4.514051 TCGGGAGAGGTAGAGGGA 57.486 61.111 0.00 0.00 0.00 4.20
138 139 2.232622 TCGGGAGAGGTAGAGGGAG 58.767 63.158 0.00 0.00 0.00 4.30
139 140 1.151908 CGGGAGAGGTAGAGGGAGG 59.848 68.421 0.00 0.00 0.00 4.30
140 141 1.544703 GGGAGAGGTAGAGGGAGGG 59.455 68.421 0.00 0.00 0.00 4.30
141 142 1.544703 GGAGAGGTAGAGGGAGGGG 59.455 68.421 0.00 0.00 0.00 4.79
142 143 1.152419 GAGAGGTAGAGGGAGGGGC 60.152 68.421 0.00 0.00 0.00 5.80
143 144 1.627460 AGAGGTAGAGGGAGGGGCT 60.627 63.158 0.00 0.00 0.00 5.19
144 145 1.458588 GAGGTAGAGGGAGGGGCTG 60.459 68.421 0.00 0.00 0.00 4.85
145 146 2.446802 GGTAGAGGGAGGGGCTGG 60.447 72.222 0.00 0.00 0.00 4.85
146 147 2.446802 GTAGAGGGAGGGGCTGGG 60.447 72.222 0.00 0.00 0.00 4.45
147 148 4.499116 TAGAGGGAGGGGCTGGGC 62.499 72.222 0.00 0.00 0.00 5.36
173 174 3.416351 TCGAGAGAGGCAGGGAGA 58.584 61.111 0.00 0.00 34.84 3.71
174 175 1.225983 TCGAGAGAGGCAGGGAGAG 59.774 63.158 0.00 0.00 34.84 3.20
175 176 1.827789 CGAGAGAGGCAGGGAGAGG 60.828 68.421 0.00 0.00 0.00 3.69
176 177 1.457455 GAGAGAGGCAGGGAGAGGG 60.457 68.421 0.00 0.00 0.00 4.30
177 178 1.938596 AGAGAGGCAGGGAGAGGGA 60.939 63.158 0.00 0.00 0.00 4.20
178 179 1.457455 GAGAGGCAGGGAGAGGGAG 60.457 68.421 0.00 0.00 0.00 4.30
179 180 2.445654 GAGGCAGGGAGAGGGAGG 60.446 72.222 0.00 0.00 0.00 4.30
180 181 4.101077 AGGCAGGGAGAGGGAGGG 62.101 72.222 0.00 0.00 0.00 4.30
183 184 4.101077 CAGGGAGAGGGAGGGGCT 62.101 72.222 0.00 0.00 0.00 5.19
184 185 4.101077 AGGGAGAGGGAGGGGCTG 62.101 72.222 0.00 0.00 0.00 4.85
186 187 4.095400 GGAGAGGGAGGGGCTGGA 62.095 72.222 0.00 0.00 0.00 3.86
187 188 2.766229 GAGAGGGAGGGGCTGGAC 60.766 72.222 0.00 0.00 0.00 4.02
188 189 4.787280 AGAGGGAGGGGCTGGACG 62.787 72.222 0.00 0.00 0.00 4.79
217 218 3.632080 CGGGGCTGGTGTGGTGTA 61.632 66.667 0.00 0.00 0.00 2.90
218 219 2.033602 GGGGCTGGTGTGGTGTAC 59.966 66.667 0.00 0.00 0.00 2.90
219 220 2.358247 GGGCTGGTGTGGTGTACG 60.358 66.667 0.00 0.00 0.00 3.67
220 221 3.047877 GGCTGGTGTGGTGTACGC 61.048 66.667 0.00 0.00 39.09 4.42
221 222 3.411351 GCTGGTGTGGTGTACGCG 61.411 66.667 3.53 3.53 40.74 6.01
222 223 2.028484 CTGGTGTGGTGTACGCGT 59.972 61.111 19.17 19.17 40.74 6.01
223 224 2.279584 TGGTGTGGTGTACGCGTG 60.280 61.111 24.59 0.00 40.74 5.34
224 225 3.708734 GGTGTGGTGTACGCGTGC 61.709 66.667 24.59 22.71 40.74 5.34
225 226 4.054455 GTGTGGTGTACGCGTGCG 62.054 66.667 24.59 13.39 46.03 5.34
226 227 4.267503 TGTGGTGTACGCGTGCGA 62.268 61.111 24.59 8.75 42.83 5.10
227 228 3.467119 GTGGTGTACGCGTGCGAG 61.467 66.667 24.59 5.09 42.83 5.03
228 229 4.710695 TGGTGTACGCGTGCGAGG 62.711 66.667 24.59 0.00 42.83 4.63
230 231 4.409218 GTGTACGCGTGCGAGGGA 62.409 66.667 24.59 0.04 42.83 4.20
231 232 4.111016 TGTACGCGTGCGAGGGAG 62.111 66.667 24.59 0.00 42.83 4.30
232 233 4.849329 GTACGCGTGCGAGGGAGG 62.849 72.222 24.59 0.00 42.83 4.30
287 288 2.838386 CGTGAGGAATCAATGGCAAG 57.162 50.000 0.00 0.00 0.00 4.01
288 289 1.402968 CGTGAGGAATCAATGGCAAGG 59.597 52.381 0.00 0.00 0.00 3.61
289 290 1.135721 GTGAGGAATCAATGGCAAGGC 59.864 52.381 0.00 0.00 0.00 4.35
290 291 1.006281 TGAGGAATCAATGGCAAGGCT 59.994 47.619 0.00 0.00 0.00 4.58
291 292 1.407979 GAGGAATCAATGGCAAGGCTG 59.592 52.381 0.00 0.00 0.00 4.85
292 293 1.006281 AGGAATCAATGGCAAGGCTGA 59.994 47.619 0.00 0.00 0.00 4.26
293 294 1.135721 GGAATCAATGGCAAGGCTGAC 59.864 52.381 0.00 0.00 0.00 3.51
294 295 1.135721 GAATCAATGGCAAGGCTGACC 59.864 52.381 0.00 0.00 0.00 4.02
295 296 1.033746 ATCAATGGCAAGGCTGACCG 61.034 55.000 0.00 0.00 42.76 4.79
296 297 2.361610 AATGGCAAGGCTGACCGG 60.362 61.111 0.00 0.00 42.76 5.28
317 318 3.357504 GCAGCCTTGCCATTGATTC 57.642 52.632 0.00 0.00 44.74 2.52
318 319 0.179092 GCAGCCTTGCCATTGATTCC 60.179 55.000 0.00 0.00 44.74 3.01
319 320 0.462789 CAGCCTTGCCATTGATTCCC 59.537 55.000 0.00 0.00 0.00 3.97
320 321 0.688749 AGCCTTGCCATTGATTCCCC 60.689 55.000 0.00 0.00 0.00 4.81
321 322 2.019897 GCCTTGCCATTGATTCCCCG 62.020 60.000 0.00 0.00 0.00 5.73
322 323 1.438814 CTTGCCATTGATTCCCCGC 59.561 57.895 0.00 0.00 0.00 6.13
323 324 2.340453 CTTGCCATTGATTCCCCGCG 62.340 60.000 0.00 0.00 0.00 6.46
324 325 3.595758 GCCATTGATTCCCCGCGG 61.596 66.667 21.04 21.04 0.00 6.46
325 326 2.906897 CCATTGATTCCCCGCGGG 60.907 66.667 37.99 37.99 46.11 6.13
340 341 4.011517 GGGAACCGAGGCCGTTGA 62.012 66.667 0.00 0.00 40.86 3.18
341 342 2.434359 GGAACCGAGGCCGTTGAG 60.434 66.667 0.00 0.00 0.00 3.02
342 343 2.434359 GAACCGAGGCCGTTGAGG 60.434 66.667 0.00 0.00 44.97 3.86
343 344 3.952628 GAACCGAGGCCGTTGAGGG 62.953 68.421 0.00 0.00 41.48 4.30
345 346 3.702048 CCGAGGCCGTTGAGGGAA 61.702 66.667 0.00 0.00 41.48 3.97
346 347 2.125512 CGAGGCCGTTGAGGGAAG 60.126 66.667 0.00 0.00 41.48 3.46
347 348 2.646175 CGAGGCCGTTGAGGGAAGA 61.646 63.158 0.00 0.00 41.48 2.87
348 349 1.079057 GAGGCCGTTGAGGGAAGAC 60.079 63.158 0.00 0.00 41.48 3.01
349 350 2.434359 GGCCGTTGAGGGAAGACG 60.434 66.667 0.00 0.00 41.48 4.18
350 351 2.654877 GCCGTTGAGGGAAGACGA 59.345 61.111 0.00 0.00 41.48 4.20
351 352 1.446272 GCCGTTGAGGGAAGACGAG 60.446 63.158 0.00 0.00 41.48 4.18
352 353 1.215647 CCGTTGAGGGAAGACGAGG 59.784 63.158 0.00 0.00 38.99 4.63
353 354 1.446272 CGTTGAGGGAAGACGAGGC 60.446 63.158 0.00 0.00 38.99 4.70
354 355 1.446272 GTTGAGGGAAGACGAGGCG 60.446 63.158 0.00 0.00 0.00 5.52
355 356 3.296709 TTGAGGGAAGACGAGGCGC 62.297 63.158 0.00 0.00 0.00 6.53
356 357 4.516195 GAGGGAAGACGAGGCGCC 62.516 72.222 21.89 21.89 0.00 6.53
359 360 4.430765 GGAAGACGAGGCGCCGAA 62.431 66.667 23.20 0.00 0.00 4.30
360 361 2.202756 GAAGACGAGGCGCCGAAT 60.203 61.111 23.20 10.34 0.00 3.34
361 362 2.202756 AAGACGAGGCGCCGAATC 60.203 61.111 23.20 19.12 0.00 2.52
362 363 4.554363 AGACGAGGCGCCGAATCG 62.554 66.667 28.66 28.66 42.04 3.34
387 388 2.668550 GGCTGACCCGCGTCTTTT 60.669 61.111 4.92 0.00 39.94 2.27
388 389 2.258726 GGCTGACCCGCGTCTTTTT 61.259 57.895 4.92 0.00 39.94 1.94
389 390 1.206831 GCTGACCCGCGTCTTTTTC 59.793 57.895 4.92 0.00 39.94 2.29
390 391 1.491563 CTGACCCGCGTCTTTTTCG 59.508 57.895 4.92 0.00 39.94 3.46
396 397 2.051703 GCGTCTTTTTCGCGCCAA 60.052 55.556 0.00 0.00 44.67 4.52
397 398 1.655959 GCGTCTTTTTCGCGCCAAA 60.656 52.632 0.00 0.00 44.67 3.28
398 399 1.203600 GCGTCTTTTTCGCGCCAAAA 61.204 50.000 8.92 8.92 44.67 2.44
399 400 0.496851 CGTCTTTTTCGCGCCAAAAC 59.503 50.000 12.58 1.73 0.00 2.43
400 401 1.551145 GTCTTTTTCGCGCCAAAACA 58.449 45.000 12.58 0.00 0.00 2.83
401 402 1.516864 GTCTTTTTCGCGCCAAAACAG 59.483 47.619 12.58 12.56 0.00 3.16
402 403 0.229500 CTTTTTCGCGCCAAAACAGC 59.771 50.000 12.58 0.00 0.00 4.40
403 404 0.179124 TTTTTCGCGCCAAAACAGCT 60.179 45.000 12.58 0.00 0.00 4.24
404 405 0.593773 TTTTCGCGCCAAAACAGCTC 60.594 50.000 8.92 0.00 0.00 4.09
405 406 2.709629 TTTCGCGCCAAAACAGCTCG 62.710 55.000 0.00 0.00 39.68 5.03
408 409 4.404654 CGCCAAAACAGCTCGCCC 62.405 66.667 0.00 0.00 0.00 6.13
409 410 4.056125 GCCAAAACAGCTCGCCCC 62.056 66.667 0.00 0.00 0.00 5.80
410 411 3.737172 CCAAAACAGCTCGCCCCG 61.737 66.667 0.00 0.00 0.00 5.73
411 412 3.737172 CAAAACAGCTCGCCCCGG 61.737 66.667 0.00 0.00 0.00 5.73
478 479 2.049156 GCTGTTTTCGGCCCAAGC 60.049 61.111 0.00 0.00 45.68 4.01
488 489 3.758931 GCCCAAGCCGGCGAAAAT 61.759 61.111 23.20 0.00 39.64 1.82
489 490 2.489751 CCCAAGCCGGCGAAAATC 59.510 61.111 23.20 0.00 0.00 2.17
490 491 2.100216 CCAAGCCGGCGAAAATCG 59.900 61.111 23.20 5.28 43.89 3.34
492 493 3.131478 AAGCCGGCGAAAATCGGG 61.131 61.111 23.20 0.00 45.75 5.14
495 496 3.573491 CCGGCGAAAATCGGGCTC 61.573 66.667 9.30 0.00 42.32 4.70
496 497 3.573491 CGGCGAAAATCGGGCTCC 61.573 66.667 0.00 0.00 40.84 4.70
497 498 2.124695 GGCGAAAATCGGGCTCCT 60.125 61.111 1.64 0.00 40.84 3.69
498 499 2.472909 GGCGAAAATCGGGCTCCTG 61.473 63.158 1.64 0.00 40.84 3.86
499 500 2.472909 GCGAAAATCGGGCTCCTGG 61.473 63.158 1.64 0.00 40.84 4.45
500 501 1.819632 CGAAAATCGGGCTCCTGGG 60.820 63.158 0.00 0.00 36.00 4.45
501 502 1.453928 GAAAATCGGGCTCCTGGGG 60.454 63.158 0.00 0.00 0.00 4.96
502 503 2.911221 GAAAATCGGGCTCCTGGGGG 62.911 65.000 0.00 0.00 0.00 5.40
520 521 2.510691 CGCGACTGGGCCGTTTAT 60.511 61.111 0.00 0.00 0.00 1.40
521 522 2.104253 CGCGACTGGGCCGTTTATT 61.104 57.895 0.00 0.00 0.00 1.40
522 523 1.719709 GCGACTGGGCCGTTTATTC 59.280 57.895 0.00 0.00 0.00 1.75
523 524 2.003672 CGACTGGGCCGTTTATTCG 58.996 57.895 0.00 0.00 0.00 3.34
530 531 2.707039 CCGTTTATTCGGCGCCAG 59.293 61.111 28.98 19.33 43.96 4.85
531 532 2.022762 CGTTTATTCGGCGCCAGC 59.977 61.111 28.98 7.43 44.18 4.85
532 533 2.022762 GTTTATTCGGCGCCAGCG 59.977 61.111 28.98 13.22 46.35 5.18
554 555 3.266240 AAAAATCGCCTGGGGAGAC 57.734 52.632 18.77 0.00 33.72 3.36
566 567 3.681473 GGAGACCTTTTTGGGGCG 58.319 61.111 0.00 0.00 39.91 6.13
567 568 2.636412 GGAGACCTTTTTGGGGCGC 61.636 63.158 0.00 0.00 39.91 6.53
568 569 2.978018 GAGACCTTTTTGGGGCGCG 61.978 63.158 0.00 0.00 39.91 6.86
569 570 4.050934 GACCTTTTTGGGGCGCGG 62.051 66.667 8.83 0.00 41.11 6.46
572 573 4.722855 CTTTTTGGGGCGCGGCTG 62.723 66.667 32.30 9.89 0.00 4.85
581 582 4.527157 GCGCGGCTGAAGATGCAC 62.527 66.667 8.83 0.00 0.00 4.57
582 583 2.816958 CGCGGCTGAAGATGCACT 60.817 61.111 0.00 0.00 0.00 4.40
583 584 2.393768 CGCGGCTGAAGATGCACTT 61.394 57.895 0.00 0.00 42.03 3.16
652 654 1.108776 TGTGCGTCACCCCTATCTAC 58.891 55.000 7.38 0.00 32.73 2.59
675 682 4.604156 TCTTATCTCTCTGCCTTGTCTGA 58.396 43.478 0.00 0.00 0.00 3.27
683 690 4.040339 TCTCTGCCTTGTCTGATTGTAACA 59.960 41.667 0.00 0.00 0.00 2.41
776 787 1.674651 GGAGAAGCACCCGGTTTCC 60.675 63.158 0.00 0.00 37.43 3.13
795 811 4.572571 TGGAAAACCAGCGCCCGT 62.573 61.111 2.29 0.00 0.00 5.28
876 901 0.318120 CCCATCAACACAAACCAGCC 59.682 55.000 0.00 0.00 0.00 4.85
886 926 1.615392 ACAAACCAGCCTCAATTCAGC 59.385 47.619 0.00 0.00 0.00 4.26
943 999 5.296283 CGCAAGTCCACTACTACTATACACT 59.704 44.000 0.00 0.00 37.50 3.55
944 1000 6.183360 CGCAAGTCCACTACTACTATACACTT 60.183 42.308 0.00 0.00 37.50 3.16
1289 1715 3.564264 AGTACTAGTAGCTTAGGGGTGC 58.436 50.000 1.87 0.00 0.00 5.01
1295 1721 0.902531 TAGCTTAGGGGTGCTGTGTC 59.097 55.000 0.00 0.00 0.00 3.67
1396 1888 7.419172 GGCTATGAGTTTATATATCACCCTCCC 60.419 44.444 0.00 0.00 0.00 4.30
1414 1910 1.278985 CCCTGTCCATGTGCTTCTGTA 59.721 52.381 0.00 0.00 0.00 2.74
1433 1935 5.710099 TCTGTAACTATTTTGAAAGGCCCAG 59.290 40.000 0.00 0.00 0.00 4.45
1434 1936 5.390387 TGTAACTATTTTGAAAGGCCCAGT 58.610 37.500 0.00 0.00 0.00 4.00
1472 1977 5.303971 AGAGAGGAACAATGTTCAGAGTTG 58.696 41.667 25.14 0.00 0.00 3.16
1486 1992 0.747283 GAGTTGCATGGGGAGAGCAG 60.747 60.000 0.00 0.00 39.72 4.24
1500 2006 0.588252 GAGCAGCTCAGCAAAACGAA 59.412 50.000 18.17 0.00 36.85 3.85
1515 2030 5.402270 GCAAAACGAAGCATACAGAAAACAT 59.598 36.000 0.00 0.00 0.00 2.71
1597 4902 1.040646 GGATCTCAGCGATACACCCA 58.959 55.000 0.00 0.00 32.83 4.51
1607 4912 2.330924 GATACACCCAGCTGCCCTCC 62.331 65.000 8.66 0.00 0.00 4.30
1608 4913 3.863114 TACACCCAGCTGCCCTCCA 62.863 63.158 8.66 0.00 0.00 3.86
1609 4914 3.970410 CACCCAGCTGCCCTCCAA 61.970 66.667 8.66 0.00 0.00 3.53
1610 4915 3.655211 ACCCAGCTGCCCTCCAAG 61.655 66.667 8.66 0.00 0.00 3.61
1611 4916 3.655211 CCCAGCTGCCCTCCAAGT 61.655 66.667 8.66 0.00 0.00 3.16
1612 4917 2.360852 CCAGCTGCCCTCCAAGTG 60.361 66.667 8.66 0.00 0.00 3.16
1757 5128 2.022129 GAGTCGACCGGTTGTGCAG 61.022 63.158 21.46 3.51 0.00 4.41
1769 5144 2.153547 TTGTGCAGGCGACGAGATCA 62.154 55.000 0.00 0.00 0.00 2.92
1775 5150 3.032609 GCGACGAGATCATGGCGG 61.033 66.667 13.44 0.00 0.00 6.13
1797 5172 5.346522 GGACATGATCTGAATTTCTTTGCC 58.653 41.667 0.00 0.00 0.00 4.52
1803 5178 2.297033 TCTGAATTTCTTTGCCCTGCAC 59.703 45.455 0.00 0.00 38.71 4.57
1804 5179 2.298163 CTGAATTTCTTTGCCCTGCACT 59.702 45.455 0.00 0.00 38.71 4.40
1805 5180 3.495331 TGAATTTCTTTGCCCTGCACTA 58.505 40.909 0.00 0.00 38.71 2.74
1839 5937 7.259161 GGACACGAGATCTAATTAAAGTGAGT 58.741 38.462 0.00 0.00 33.18 3.41
1844 5942 8.740906 ACGAGATCTAATTAAAGTGAGTCTGAA 58.259 33.333 0.00 0.00 0.00 3.02
1865 5964 5.633601 TGAACAGAGTGATGACGTTGATAAC 59.366 40.000 0.00 0.00 0.00 1.89
1944 6053 1.140312 TCCTCTTTCCAGTTGCAGGT 58.860 50.000 0.00 0.00 0.00 4.00
1967 6076 1.566404 CCGTGTAGAATATGCGCACA 58.434 50.000 14.90 0.00 0.00 4.57
1973 6082 3.627123 TGTAGAATATGCGCACAATGCTT 59.373 39.130 14.90 0.00 42.25 3.91
1974 6083 3.788333 AGAATATGCGCACAATGCTTT 57.212 38.095 14.90 0.00 42.25 3.51
1975 6084 4.114058 AGAATATGCGCACAATGCTTTT 57.886 36.364 14.90 0.00 42.25 2.27
1976 6085 3.861113 AGAATATGCGCACAATGCTTTTG 59.139 39.130 14.90 0.00 42.25 2.44
1977 6086 1.348276 TATGCGCACAATGCTTTTGC 58.652 45.000 14.90 8.46 42.25 3.68
2001 6110 1.742880 CAGACGGCCATGGTGTCAG 60.743 63.158 29.23 22.05 35.09 3.51
2003 6112 2.927856 ACGGCCATGGTGTCAGGA 60.928 61.111 14.67 0.00 0.00 3.86
2004 6113 2.257409 GACGGCCATGGTGTCAGGAT 62.257 60.000 25.36 1.77 32.91 3.24
2005 6114 1.524621 CGGCCATGGTGTCAGGATC 60.525 63.158 14.67 0.00 0.00 3.36
2006 6115 1.524621 GGCCATGGTGTCAGGATCG 60.525 63.158 14.67 0.00 0.00 3.69
2009 7736 0.179073 CCATGGTGTCAGGATCGGTC 60.179 60.000 2.57 0.00 0.00 4.79
2013 7740 0.320374 GGTGTCAGGATCGGTCACAA 59.680 55.000 0.00 0.00 0.00 3.33
2015 7742 2.489971 GTGTCAGGATCGGTCACAAAA 58.510 47.619 0.00 0.00 0.00 2.44
2035 7762 5.632034 AAAAACAGACTCAGACTAACCCT 57.368 39.130 0.00 0.00 0.00 4.34
2036 7763 5.632034 AAAACAGACTCAGACTAACCCTT 57.368 39.130 0.00 0.00 0.00 3.95
2038 7765 2.820787 ACAGACTCAGACTAACCCTTCG 59.179 50.000 0.00 0.00 0.00 3.79
2041 7768 3.506844 AGACTCAGACTAACCCTTCGAAC 59.493 47.826 0.00 0.00 0.00 3.95
2044 7771 0.893447 AGACTAACCCTTCGAACCGG 59.107 55.000 0.00 0.00 0.00 5.28
2045 7772 0.605083 GACTAACCCTTCGAACCGGT 59.395 55.000 0.00 0.00 0.00 5.28
2047 7774 0.893447 CTAACCCTTCGAACCGGTCT 59.107 55.000 8.04 0.00 0.00 3.85
2049 7776 1.341080 AACCCTTCGAACCGGTCTTA 58.659 50.000 8.04 0.00 0.00 2.10
2050 7777 1.341080 ACCCTTCGAACCGGTCTTAA 58.659 50.000 8.04 0.89 0.00 1.85
2051 7778 1.693606 ACCCTTCGAACCGGTCTTAAA 59.306 47.619 8.04 0.00 0.00 1.52
2052 7779 2.104622 ACCCTTCGAACCGGTCTTAAAA 59.895 45.455 8.04 0.00 0.00 1.52
2055 7782 3.058708 CCTTCGAACCGGTCTTAAAAACC 60.059 47.826 8.04 0.00 0.00 3.27
2063 7790 3.076079 GGTCTTAAAAACCGGGGATGA 57.924 47.619 6.32 0.00 0.00 2.92
2064 7791 2.751259 GGTCTTAAAAACCGGGGATGAC 59.249 50.000 6.32 4.58 0.00 3.06
2065 7792 2.751259 GTCTTAAAAACCGGGGATGACC 59.249 50.000 6.32 0.00 39.11 4.02
2066 7793 2.375845 TCTTAAAAACCGGGGATGACCA 59.624 45.455 6.32 0.00 42.91 4.02
2067 7794 2.500392 TAAAAACCGGGGATGACCAG 57.500 50.000 6.32 0.00 42.91 4.00
2069 7796 2.075355 AAAACCGGGGATGACCAGCA 62.075 55.000 6.32 0.00 42.91 4.41
2081 7808 3.328535 TGACCAGCATCCCTATGTCTA 57.671 47.619 0.00 0.00 35.38 2.59
2082 7809 3.234353 TGACCAGCATCCCTATGTCTAG 58.766 50.000 0.00 0.00 35.38 2.43
2083 7810 1.974236 ACCAGCATCCCTATGTCTAGC 59.026 52.381 0.00 0.00 35.38 3.42
2084 7811 2.255406 CCAGCATCCCTATGTCTAGCT 58.745 52.381 0.00 0.00 35.38 3.32
2085 7812 2.233431 CCAGCATCCCTATGTCTAGCTC 59.767 54.545 0.00 0.00 35.38 4.09
2088 7815 3.969976 AGCATCCCTATGTCTAGCTCAAA 59.030 43.478 0.00 0.00 35.38 2.69
2089 7816 4.596643 AGCATCCCTATGTCTAGCTCAAAT 59.403 41.667 0.00 0.00 35.38 2.32
2090 7817 4.934602 GCATCCCTATGTCTAGCTCAAATC 59.065 45.833 0.00 0.00 35.38 2.17
2092 7819 4.215908 TCCCTATGTCTAGCTCAAATCGT 58.784 43.478 0.00 0.00 0.00 3.73
2093 7820 5.382616 TCCCTATGTCTAGCTCAAATCGTA 58.617 41.667 0.00 0.00 0.00 3.43
2094 7821 5.473846 TCCCTATGTCTAGCTCAAATCGTAG 59.526 44.000 0.00 0.00 0.00 3.51
2095 7822 5.336055 CCCTATGTCTAGCTCAAATCGTAGG 60.336 48.000 0.00 2.80 35.54 3.18
2096 7823 4.592485 ATGTCTAGCTCAAATCGTAGGG 57.408 45.455 0.00 0.00 0.00 3.53
2097 7824 3.362706 TGTCTAGCTCAAATCGTAGGGT 58.637 45.455 0.00 0.00 0.00 4.34
2098 7825 3.130516 TGTCTAGCTCAAATCGTAGGGTG 59.869 47.826 0.00 0.00 0.00 4.61
2099 7826 2.693591 TCTAGCTCAAATCGTAGGGTGG 59.306 50.000 0.00 0.00 0.00 4.61
2100 7827 1.568504 AGCTCAAATCGTAGGGTGGA 58.431 50.000 0.00 0.00 0.00 4.02
2101 7828 2.119495 AGCTCAAATCGTAGGGTGGAT 58.881 47.619 0.00 0.00 0.00 3.41
2103 7830 3.904339 AGCTCAAATCGTAGGGTGGATAT 59.096 43.478 0.00 0.00 0.00 1.63
2104 7831 5.084519 AGCTCAAATCGTAGGGTGGATATA 58.915 41.667 0.00 0.00 0.00 0.86
2105 7832 5.186021 AGCTCAAATCGTAGGGTGGATATAG 59.814 44.000 0.00 0.00 0.00 1.31
2107 7834 6.626181 GCTCAAATCGTAGGGTGGATATAGAG 60.626 46.154 0.00 0.00 0.00 2.43
2109 7836 3.083122 TCGTAGGGTGGATATAGAGGC 57.917 52.381 0.00 0.00 0.00 4.70
2111 7838 2.805194 GTAGGGTGGATATAGAGGCGT 58.195 52.381 0.00 0.00 0.00 5.68
2112 7839 1.926108 AGGGTGGATATAGAGGCGTC 58.074 55.000 0.00 0.00 0.00 5.19
2113 7840 0.896226 GGGTGGATATAGAGGCGTCC 59.104 60.000 2.06 0.00 0.00 4.79
2114 7841 0.526662 GGTGGATATAGAGGCGTCCG 59.473 60.000 2.06 0.00 33.39 4.79
2115 7842 1.245732 GTGGATATAGAGGCGTCCGT 58.754 55.000 2.06 0.00 33.39 4.69
2118 7845 1.199558 GGATATAGAGGCGTCCGTCAC 59.800 57.143 2.06 0.00 0.00 3.67
2119 7846 1.878088 GATATAGAGGCGTCCGTCACA 59.122 52.381 2.06 0.00 0.00 3.58
2120 7847 1.977056 TATAGAGGCGTCCGTCACAT 58.023 50.000 2.06 0.00 0.00 3.21
2121 7848 0.669077 ATAGAGGCGTCCGTCACATC 59.331 55.000 2.06 0.00 0.00 3.06
2122 7849 1.712018 TAGAGGCGTCCGTCACATCG 61.712 60.000 2.06 0.00 0.00 3.84
2130 7857 4.478195 CGTCACATCGGACCTGAC 57.522 61.111 6.76 6.76 34.24 3.51
2132 7859 0.732880 CGTCACATCGGACCTGACAC 60.733 60.000 14.14 0.00 35.06 3.67
2133 7860 0.389948 GTCACATCGGACCTGACACC 60.390 60.000 10.55 0.00 35.39 4.16
2134 7861 1.079127 CACATCGGACCTGACACCC 60.079 63.158 0.00 0.00 0.00 4.61
2135 7862 1.229209 ACATCGGACCTGACACCCT 60.229 57.895 0.00 0.00 0.00 4.34
2136 7863 0.040646 ACATCGGACCTGACACCCTA 59.959 55.000 0.00 0.00 0.00 3.53
2137 7864 0.747255 CATCGGACCTGACACCCTAG 59.253 60.000 0.00 0.00 0.00 3.02
2138 7865 1.043673 ATCGGACCTGACACCCTAGC 61.044 60.000 0.00 0.00 0.00 3.42
2140 7867 2.368011 GGACCTGACACCCTAGCCC 61.368 68.421 0.00 0.00 0.00 5.19
2143 7870 1.613630 CCTGACACCCTAGCCCACT 60.614 63.158 0.00 0.00 0.00 4.00
2144 7871 0.325296 CCTGACACCCTAGCCCACTA 60.325 60.000 0.00 0.00 0.00 2.74
2147 7874 1.272807 GACACCCTAGCCCACTACAA 58.727 55.000 0.00 0.00 0.00 2.41
2148 7875 1.626825 GACACCCTAGCCCACTACAAA 59.373 52.381 0.00 0.00 0.00 2.83
2149 7876 2.238898 GACACCCTAGCCCACTACAAAT 59.761 50.000 0.00 0.00 0.00 2.32
2150 7877 2.647802 ACACCCTAGCCCACTACAAATT 59.352 45.455 0.00 0.00 0.00 1.82
2151 7878 3.847780 ACACCCTAGCCCACTACAAATTA 59.152 43.478 0.00 0.00 0.00 1.40
2152 7879 4.196971 CACCCTAGCCCACTACAAATTAC 58.803 47.826 0.00 0.00 0.00 1.89
2153 7880 3.847780 ACCCTAGCCCACTACAAATTACA 59.152 43.478 0.00 0.00 0.00 2.41
2154 7881 4.477213 ACCCTAGCCCACTACAAATTACAT 59.523 41.667 0.00 0.00 0.00 2.29
2156 7883 5.397447 CCCTAGCCCACTACAAATTACATCA 60.397 44.000 0.00 0.00 0.00 3.07
2157 7884 6.119536 CCTAGCCCACTACAAATTACATCAA 58.880 40.000 0.00 0.00 0.00 2.57
2158 7885 6.601613 CCTAGCCCACTACAAATTACATCAAA 59.398 38.462 0.00 0.00 0.00 2.69
2159 7886 7.285401 CCTAGCCCACTACAAATTACATCAAAT 59.715 37.037 0.00 0.00 0.00 2.32
2162 7889 6.127479 GCCCACTACAAATTACATCAAATCCA 60.127 38.462 0.00 0.00 0.00 3.41
2163 7890 7.417797 GCCCACTACAAATTACATCAAATCCAT 60.418 37.037 0.00 0.00 0.00 3.41
2166 7893 8.137437 CACTACAAATTACATCAAATCCATCCC 58.863 37.037 0.00 0.00 0.00 3.85
2168 7895 6.204555 ACAAATTACATCAAATCCATCCCCT 58.795 36.000 0.00 0.00 0.00 4.79
2169 7896 6.324770 ACAAATTACATCAAATCCATCCCCTC 59.675 38.462 0.00 0.00 0.00 4.30
2170 7897 2.645838 ACATCAAATCCATCCCCTCG 57.354 50.000 0.00 0.00 0.00 4.63
2172 7899 0.111253 ATCAAATCCATCCCCTCGGC 59.889 55.000 0.00 0.00 0.00 5.54
2173 7900 1.529244 CAAATCCATCCCCTCGGCC 60.529 63.158 0.00 0.00 0.00 6.13
2174 7901 1.697754 AAATCCATCCCCTCGGCCT 60.698 57.895 0.00 0.00 0.00 5.19
2175 7902 0.401395 AAATCCATCCCCTCGGCCTA 60.401 55.000 0.00 0.00 0.00 3.93
2177 7904 2.037304 ATCCATCCCCTCGGCCTACT 62.037 60.000 0.00 0.00 0.00 2.57
2178 7905 1.766461 CCATCCCCTCGGCCTACTT 60.766 63.158 0.00 0.00 0.00 2.24
2179 7906 1.749033 CATCCCCTCGGCCTACTTC 59.251 63.158 0.00 0.00 0.00 3.01
2180 7907 1.048724 CATCCCCTCGGCCTACTTCA 61.049 60.000 0.00 0.00 0.00 3.02
2181 7908 0.104934 ATCCCCTCGGCCTACTTCAT 60.105 55.000 0.00 0.00 0.00 2.57
2182 7909 0.759436 TCCCCTCGGCCTACTTCATC 60.759 60.000 0.00 0.00 0.00 2.92
2183 7910 1.749033 CCCTCGGCCTACTTCATCC 59.251 63.158 0.00 0.00 0.00 3.51
2184 7911 1.048724 CCCTCGGCCTACTTCATCCA 61.049 60.000 0.00 0.00 0.00 3.41
2185 7912 0.390860 CCTCGGCCTACTTCATCCAG 59.609 60.000 0.00 0.00 0.00 3.86
2189 7916 0.817229 GGCCTACTTCATCCAGCTGC 60.817 60.000 8.66 0.00 0.00 5.25
2190 7917 0.817229 GCCTACTTCATCCAGCTGCC 60.817 60.000 8.66 0.00 0.00 4.85
2192 7919 0.835941 CTACTTCATCCAGCTGCCCT 59.164 55.000 8.66 0.00 0.00 5.19
2193 7920 0.833287 TACTTCATCCAGCTGCCCTC 59.167 55.000 8.66 0.00 0.00 4.30
2195 7922 0.179051 CTTCATCCAGCTGCCCTCTC 60.179 60.000 8.66 0.00 0.00 3.20
2197 7924 2.071262 CATCCAGCTGCCCTCTCCT 61.071 63.158 8.66 0.00 0.00 3.69
2198 7925 1.765657 ATCCAGCTGCCCTCTCCTC 60.766 63.158 8.66 0.00 0.00 3.71
2199 7926 2.254773 ATCCAGCTGCCCTCTCCTCT 62.255 60.000 8.66 0.00 0.00 3.69
2201 7928 1.381599 CAGCTGCCCTCTCCTCTCT 60.382 63.158 0.00 0.00 0.00 3.10
2202 7929 0.977108 CAGCTGCCCTCTCCTCTCTT 60.977 60.000 0.00 0.00 0.00 2.85
2205 7932 1.864669 CTGCCCTCTCCTCTCTTCTT 58.135 55.000 0.00 0.00 0.00 2.52
2206 7933 1.756538 CTGCCCTCTCCTCTCTTCTTC 59.243 57.143 0.00 0.00 0.00 2.87
2207 7934 1.119684 GCCCTCTCCTCTCTTCTTCC 58.880 60.000 0.00 0.00 0.00 3.46
2208 7935 1.342975 GCCCTCTCCTCTCTTCTTCCT 60.343 57.143 0.00 0.00 0.00 3.36
2209 7936 2.666317 CCCTCTCCTCTCTTCTTCCTC 58.334 57.143 0.00 0.00 0.00 3.71
2210 7937 2.666317 CCTCTCCTCTCTTCTTCCTCC 58.334 57.143 0.00 0.00 0.00 4.30
2211 7938 2.244769 CCTCTCCTCTCTTCTTCCTCCT 59.755 54.545 0.00 0.00 0.00 3.69
2212 7939 3.555966 CTCTCCTCTCTTCTTCCTCCTC 58.444 54.545 0.00 0.00 0.00 3.71
2213 7940 2.092646 TCTCCTCTCTTCTTCCTCCTCG 60.093 54.545 0.00 0.00 0.00 4.63
2214 7941 0.744281 CCTCTCTTCTTCCTCCTCGC 59.256 60.000 0.00 0.00 0.00 5.03
2216 7943 1.032657 TCTCTTCTTCCTCCTCGCGG 61.033 60.000 6.13 0.00 0.00 6.46
2217 7944 2.202810 CTTCTTCCTCCTCGCGGC 60.203 66.667 6.13 0.00 0.00 6.53
2218 7945 4.129737 TTCTTCCTCCTCGCGGCG 62.130 66.667 17.70 17.70 0.00 6.46
2235 7962 2.280186 GGACGTCCGATGCCATCC 60.280 66.667 20.85 0.00 0.00 3.51
2237 7964 1.144057 GACGTCCGATGCCATCCTT 59.856 57.895 3.51 0.00 0.00 3.36
2238 7965 1.153369 ACGTCCGATGCCATCCTTG 60.153 57.895 0.00 0.00 0.00 3.61
2239 7966 2.537560 CGTCCGATGCCATCCTTGC 61.538 63.158 0.00 0.00 0.00 4.01
2240 7967 1.153086 GTCCGATGCCATCCTTGCT 60.153 57.895 0.00 0.00 0.00 3.91
2241 7968 1.146930 TCCGATGCCATCCTTGCTC 59.853 57.895 0.00 0.00 0.00 4.26
2242 7969 1.895707 CCGATGCCATCCTTGCTCC 60.896 63.158 0.00 0.00 0.00 4.70
2243 7970 2.249535 CGATGCCATCCTTGCTCCG 61.250 63.158 0.00 0.00 0.00 4.63
2244 7971 2.517875 ATGCCATCCTTGCTCCGC 60.518 61.111 0.00 0.00 0.00 5.54
2245 7972 3.348554 ATGCCATCCTTGCTCCGCA 62.349 57.895 0.00 0.00 36.47 5.69
2246 7973 3.207669 GCCATCCTTGCTCCGCAG 61.208 66.667 0.00 0.00 40.61 5.18
2248 7975 3.207669 CATCCTTGCTCCGCAGCC 61.208 66.667 0.00 0.00 46.26 4.85
2249 7976 4.845580 ATCCTTGCTCCGCAGCCG 62.846 66.667 0.00 0.00 46.26 5.52
2252 7979 2.434185 CTTGCTCCGCAGCCGTTA 60.434 61.111 0.00 0.00 46.26 3.18
2253 7980 2.740714 CTTGCTCCGCAGCCGTTAC 61.741 63.158 0.00 0.00 46.26 2.50
2255 7982 4.789075 GCTCCGCAGCCGTTACGA 62.789 66.667 6.24 0.00 40.14 3.43
2256 7983 2.579787 CTCCGCAGCCGTTACGAG 60.580 66.667 6.24 0.00 0.00 4.18
2257 7984 4.789075 TCCGCAGCCGTTACGAGC 62.789 66.667 6.24 8.25 0.00 5.03
2260 7987 3.488090 GCAGCCGTTACGAGCCAC 61.488 66.667 6.24 0.00 0.00 5.01
2261 7988 2.261671 CAGCCGTTACGAGCCACT 59.738 61.111 6.24 0.00 0.00 4.00
2262 7989 1.509463 CAGCCGTTACGAGCCACTA 59.491 57.895 6.24 0.00 0.00 2.74
2263 7990 0.801067 CAGCCGTTACGAGCCACTAC 60.801 60.000 6.24 0.00 0.00 2.73
2264 7991 1.213537 GCCGTTACGAGCCACTACA 59.786 57.895 6.24 0.00 0.00 2.74
2265 7992 1.074872 GCCGTTACGAGCCACTACAC 61.075 60.000 6.24 0.00 0.00 2.90
2266 7993 0.524862 CCGTTACGAGCCACTACACT 59.475 55.000 6.24 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 2.125633 GAACGCTTCCCCGGAGAC 60.126 66.667 0.73 0.00 0.00 3.36
74 75 2.283676 AGAACGCTTCCCCGGAGA 60.284 61.111 0.73 0.00 0.00 3.71
75 76 2.125512 CAGAACGCTTCCCCGGAG 60.126 66.667 0.73 0.00 0.00 4.63
76 77 4.388499 GCAGAACGCTTCCCCGGA 62.388 66.667 0.73 0.00 37.77 5.14
78 79 3.976701 ATGGCAGAACGCTTCCCCG 62.977 63.158 0.00 0.00 41.91 5.73
79 80 2.044946 ATGGCAGAACGCTTCCCC 60.045 61.111 0.00 0.00 41.91 4.81
80 81 2.409870 CCATGGCAGAACGCTTCCC 61.410 63.158 0.00 0.00 41.91 3.97
81 82 3.056313 GCCATGGCAGAACGCTTCC 62.056 63.158 32.08 0.00 41.91 3.46
82 83 2.486966 GCCATGGCAGAACGCTTC 59.513 61.111 32.08 0.00 41.91 3.86
83 84 3.434319 CGCCATGGCAGAACGCTT 61.434 61.111 34.93 0.00 42.06 4.68
84 85 4.393155 TCGCCATGGCAGAACGCT 62.393 61.111 34.93 0.00 42.06 5.07
85 86 4.166011 GTCGCCATGGCAGAACGC 62.166 66.667 34.93 17.04 42.06 4.84
86 87 3.853330 CGTCGCCATGGCAGAACG 61.853 66.667 34.93 32.04 42.06 3.95
87 88 3.499737 CCGTCGCCATGGCAGAAC 61.500 66.667 34.93 26.11 42.06 3.01
115 116 2.907917 CTACCTCTCCCGAGCCCG 60.908 72.222 0.00 0.00 35.90 6.13
116 117 1.529713 CTCTACCTCTCCCGAGCCC 60.530 68.421 0.00 0.00 35.90 5.19
117 118 1.529713 CCTCTACCTCTCCCGAGCC 60.530 68.421 0.00 0.00 35.90 4.70
118 119 1.529713 CCCTCTACCTCTCCCGAGC 60.530 68.421 0.00 0.00 35.90 5.03
119 120 0.109723 CTCCCTCTACCTCTCCCGAG 59.890 65.000 0.00 0.00 37.01 4.63
120 121 1.354168 CCTCCCTCTACCTCTCCCGA 61.354 65.000 0.00 0.00 0.00 5.14
121 122 1.151908 CCTCCCTCTACCTCTCCCG 59.848 68.421 0.00 0.00 0.00 5.14
122 123 1.544703 CCCTCCCTCTACCTCTCCC 59.455 68.421 0.00 0.00 0.00 4.30
123 124 1.544703 CCCCTCCCTCTACCTCTCC 59.455 68.421 0.00 0.00 0.00 3.71
124 125 1.152419 GCCCCTCCCTCTACCTCTC 60.152 68.421 0.00 0.00 0.00 3.20
125 126 1.627460 AGCCCCTCCCTCTACCTCT 60.627 63.158 0.00 0.00 0.00 3.69
126 127 1.458588 CAGCCCCTCCCTCTACCTC 60.459 68.421 0.00 0.00 0.00 3.85
127 128 2.699496 CAGCCCCTCCCTCTACCT 59.301 66.667 0.00 0.00 0.00 3.08
128 129 2.446802 CCAGCCCCTCCCTCTACC 60.447 72.222 0.00 0.00 0.00 3.18
129 130 2.446802 CCCAGCCCCTCCCTCTAC 60.447 72.222 0.00 0.00 0.00 2.59
130 131 4.499116 GCCCAGCCCCTCCCTCTA 62.499 72.222 0.00 0.00 0.00 2.43
151 152 4.567385 CTGCCTCTCTCGAGCGCC 62.567 72.222 7.81 0.00 35.90 6.53
152 153 4.567385 CCTGCCTCTCTCGAGCGC 62.567 72.222 7.81 0.00 35.90 5.92
153 154 3.898509 CCCTGCCTCTCTCGAGCG 61.899 72.222 7.81 0.48 35.90 5.03
154 155 2.441164 TCCCTGCCTCTCTCGAGC 60.441 66.667 7.81 0.00 35.90 5.03
155 156 0.819259 CTCTCCCTGCCTCTCTCGAG 60.819 65.000 5.93 5.93 37.01 4.04
156 157 1.225983 CTCTCCCTGCCTCTCTCGA 59.774 63.158 0.00 0.00 0.00 4.04
157 158 1.827789 CCTCTCCCTGCCTCTCTCG 60.828 68.421 0.00 0.00 0.00 4.04
158 159 1.457455 CCCTCTCCCTGCCTCTCTC 60.457 68.421 0.00 0.00 0.00 3.20
159 160 1.938596 TCCCTCTCCCTGCCTCTCT 60.939 63.158 0.00 0.00 0.00 3.10
160 161 1.457455 CTCCCTCTCCCTGCCTCTC 60.457 68.421 0.00 0.00 0.00 3.20
161 162 2.695597 CTCCCTCTCCCTGCCTCT 59.304 66.667 0.00 0.00 0.00 3.69
162 163 2.445654 CCTCCCTCTCCCTGCCTC 60.446 72.222 0.00 0.00 0.00 4.70
163 164 4.101077 CCCTCCCTCTCCCTGCCT 62.101 72.222 0.00 0.00 0.00 4.75
166 167 4.101077 AGCCCCTCCCTCTCCCTG 62.101 72.222 0.00 0.00 0.00 4.45
167 168 4.101077 CAGCCCCTCCCTCTCCCT 62.101 72.222 0.00 0.00 0.00 4.20
169 170 4.095400 TCCAGCCCCTCCCTCTCC 62.095 72.222 0.00 0.00 0.00 3.71
170 171 2.766229 GTCCAGCCCCTCCCTCTC 60.766 72.222 0.00 0.00 0.00 3.20
171 172 4.787280 CGTCCAGCCCCTCCCTCT 62.787 72.222 0.00 0.00 0.00 3.69
200 201 3.632080 TACACCACACCAGCCCCG 61.632 66.667 0.00 0.00 0.00 5.73
201 202 2.033602 GTACACCACACCAGCCCC 59.966 66.667 0.00 0.00 0.00 5.80
202 203 2.358247 CGTACACCACACCAGCCC 60.358 66.667 0.00 0.00 0.00 5.19
203 204 3.047877 GCGTACACCACACCAGCC 61.048 66.667 0.00 0.00 0.00 4.85
204 205 3.411351 CGCGTACACCACACCAGC 61.411 66.667 0.00 0.00 0.00 4.85
205 206 2.028484 ACGCGTACACCACACCAG 59.972 61.111 11.67 0.00 0.00 4.00
206 207 2.279584 CACGCGTACACCACACCA 60.280 61.111 13.44 0.00 0.00 4.17
207 208 3.708734 GCACGCGTACACCACACC 61.709 66.667 13.44 0.00 0.00 4.16
208 209 4.054455 CGCACGCGTACACCACAC 62.054 66.667 13.44 0.00 34.35 3.82
209 210 4.267503 TCGCACGCGTACACCACA 62.268 61.111 13.44 0.00 40.74 4.17
210 211 3.467119 CTCGCACGCGTACACCAC 61.467 66.667 13.44 0.00 40.74 4.16
211 212 4.710695 CCTCGCACGCGTACACCA 62.711 66.667 13.44 0.00 40.74 4.17
213 214 4.409218 TCCCTCGCACGCGTACAC 62.409 66.667 13.44 3.32 40.74 2.90
214 215 4.111016 CTCCCTCGCACGCGTACA 62.111 66.667 13.44 0.00 40.74 2.90
215 216 4.849329 CCTCCCTCGCACGCGTAC 62.849 72.222 13.44 5.01 40.74 3.67
262 263 3.969250 TTGATTCCTCACGGGCGGC 62.969 63.158 0.00 0.00 34.39 6.53
263 264 1.153168 ATTGATTCCTCACGGGCGG 60.153 57.895 0.00 0.00 34.39 6.13
264 265 1.439353 CCATTGATTCCTCACGGGCG 61.439 60.000 0.00 0.00 34.39 6.13
265 266 1.728490 GCCATTGATTCCTCACGGGC 61.728 60.000 0.00 0.00 41.19 6.13
266 267 0.394216 TGCCATTGATTCCTCACGGG 60.394 55.000 0.00 0.00 0.00 5.28
267 268 1.402968 CTTGCCATTGATTCCTCACGG 59.597 52.381 0.00 0.00 0.00 4.94
268 269 1.402968 CCTTGCCATTGATTCCTCACG 59.597 52.381 0.00 0.00 0.00 4.35
269 270 1.135721 GCCTTGCCATTGATTCCTCAC 59.864 52.381 0.00 0.00 0.00 3.51
270 271 1.006281 AGCCTTGCCATTGATTCCTCA 59.994 47.619 0.00 0.00 0.00 3.86
271 272 1.407979 CAGCCTTGCCATTGATTCCTC 59.592 52.381 0.00 0.00 0.00 3.71
272 273 1.006281 TCAGCCTTGCCATTGATTCCT 59.994 47.619 0.00 0.00 0.00 3.36
273 274 1.135721 GTCAGCCTTGCCATTGATTCC 59.864 52.381 0.00 0.00 0.00 3.01
274 275 1.135721 GGTCAGCCTTGCCATTGATTC 59.864 52.381 0.00 0.00 0.00 2.52
275 276 1.188863 GGTCAGCCTTGCCATTGATT 58.811 50.000 0.00 0.00 0.00 2.57
276 277 1.033746 CGGTCAGCCTTGCCATTGAT 61.034 55.000 0.00 0.00 0.00 2.57
277 278 1.675310 CGGTCAGCCTTGCCATTGA 60.675 57.895 0.00 0.00 0.00 2.57
278 279 2.703798 CCGGTCAGCCTTGCCATTG 61.704 63.158 0.00 0.00 0.00 2.82
279 280 2.361610 CCGGTCAGCCTTGCCATT 60.362 61.111 0.00 0.00 0.00 3.16
300 301 0.462789 GGGAATCAATGGCAAGGCTG 59.537 55.000 0.00 0.00 0.00 4.85
301 302 0.688749 GGGGAATCAATGGCAAGGCT 60.689 55.000 0.00 0.00 0.00 4.58
302 303 1.825341 GGGGAATCAATGGCAAGGC 59.175 57.895 0.00 0.00 0.00 4.35
303 304 2.019897 GCGGGGAATCAATGGCAAGG 62.020 60.000 0.00 0.00 0.00 3.61
304 305 1.438814 GCGGGGAATCAATGGCAAG 59.561 57.895 0.00 0.00 0.00 4.01
305 306 2.413963 CGCGGGGAATCAATGGCAA 61.414 57.895 0.00 0.00 0.00 4.52
306 307 2.828095 CGCGGGGAATCAATGGCA 60.828 61.111 0.00 0.00 0.00 4.92
307 308 3.595758 CCGCGGGGAATCAATGGC 61.596 66.667 20.10 0.00 34.06 4.40
323 324 3.952628 CTCAACGGCCTCGGTTCCC 62.953 68.421 0.00 0.00 41.39 3.97
324 325 2.434359 CTCAACGGCCTCGGTTCC 60.434 66.667 0.00 0.00 41.39 3.62
325 326 2.434359 CCTCAACGGCCTCGGTTC 60.434 66.667 0.00 0.00 41.39 3.62
326 327 4.016706 CCCTCAACGGCCTCGGTT 62.017 66.667 0.00 0.00 41.39 4.44
328 329 3.665675 CTTCCCTCAACGGCCTCGG 62.666 68.421 0.00 0.00 41.39 4.63
329 330 2.125512 CTTCCCTCAACGGCCTCG 60.126 66.667 0.00 0.00 43.02 4.63
330 331 1.079057 GTCTTCCCTCAACGGCCTC 60.079 63.158 0.00 0.00 0.00 4.70
331 332 2.943978 CGTCTTCCCTCAACGGCCT 61.944 63.158 0.00 0.00 32.96 5.19
332 333 2.434359 CGTCTTCCCTCAACGGCC 60.434 66.667 0.00 0.00 32.96 6.13
333 334 1.446272 CTCGTCTTCCCTCAACGGC 60.446 63.158 0.00 0.00 37.05 5.68
334 335 1.215647 CCTCGTCTTCCCTCAACGG 59.784 63.158 0.00 0.00 37.05 4.44
335 336 1.446272 GCCTCGTCTTCCCTCAACG 60.446 63.158 0.00 0.00 37.74 4.10
336 337 1.446272 CGCCTCGTCTTCCCTCAAC 60.446 63.158 0.00 0.00 0.00 3.18
337 338 2.970639 CGCCTCGTCTTCCCTCAA 59.029 61.111 0.00 0.00 0.00 3.02
338 339 3.760035 GCGCCTCGTCTTCCCTCA 61.760 66.667 0.00 0.00 0.00 3.86
339 340 4.516195 GGCGCCTCGTCTTCCCTC 62.516 72.222 22.15 0.00 0.00 4.30
342 343 3.718210 ATTCGGCGCCTCGTCTTCC 62.718 63.158 26.68 0.00 0.00 3.46
343 344 2.202756 ATTCGGCGCCTCGTCTTC 60.203 61.111 26.68 0.00 0.00 2.87
344 345 2.202756 GATTCGGCGCCTCGTCTT 60.203 61.111 26.68 2.59 0.00 3.01
345 346 4.554363 CGATTCGGCGCCTCGTCT 62.554 66.667 26.68 4.01 0.00 4.18
370 371 2.183858 GAAAAAGACGCGGGTCAGCC 62.184 60.000 31.03 13.40 45.92 4.85
371 372 1.206831 GAAAAAGACGCGGGTCAGC 59.793 57.895 31.03 13.33 45.92 4.26
372 373 1.491563 CGAAAAAGACGCGGGTCAG 59.508 57.895 31.03 12.94 45.92 3.51
373 374 2.600475 GCGAAAAAGACGCGGGTCA 61.600 57.895 31.03 0.00 45.92 4.02
374 375 2.172659 GCGAAAAAGACGCGGGTC 59.827 61.111 23.85 23.85 46.05 4.46
380 381 0.496851 GTTTTGGCGCGAAAAAGACG 59.503 50.000 28.17 0.00 0.00 4.18
381 382 1.516864 CTGTTTTGGCGCGAAAAAGAC 59.483 47.619 28.17 18.78 0.00 3.01
382 383 1.833860 CTGTTTTGGCGCGAAAAAGA 58.166 45.000 28.17 20.17 0.00 2.52
383 384 0.229500 GCTGTTTTGGCGCGAAAAAG 59.771 50.000 28.17 24.82 0.00 2.27
384 385 0.179124 AGCTGTTTTGGCGCGAAAAA 60.179 45.000 28.17 20.66 34.52 1.94
385 386 0.593773 GAGCTGTTTTGGCGCGAAAA 60.594 50.000 23.88 23.88 34.52 2.29
386 387 1.008995 GAGCTGTTTTGGCGCGAAA 60.009 52.632 13.91 13.91 34.52 3.46
387 388 2.637025 GAGCTGTTTTGGCGCGAA 59.363 55.556 12.10 0.00 34.52 4.70
391 392 4.404654 GGGCGAGCTGTTTTGGCG 62.405 66.667 0.00 0.00 34.52 5.69
392 393 4.056125 GGGGCGAGCTGTTTTGGC 62.056 66.667 0.00 0.00 0.00 4.52
393 394 3.737172 CGGGGCGAGCTGTTTTGG 61.737 66.667 0.00 0.00 0.00 3.28
394 395 3.737172 CCGGGGCGAGCTGTTTTG 61.737 66.667 0.00 0.00 0.00 2.44
459 460 3.896863 CTTGGGCCGAAAACAGCGC 62.897 63.158 0.00 0.00 41.90 5.92
460 461 2.255252 CTTGGGCCGAAAACAGCG 59.745 61.111 0.54 0.00 0.00 5.18
461 462 2.049156 GCTTGGGCCGAAAACAGC 60.049 61.111 0.54 0.00 0.00 4.40
472 473 2.489751 GATTTTCGCCGGCTTGGG 59.510 61.111 26.68 9.07 38.63 4.12
473 474 2.100216 CGATTTTCGCCGGCTTGG 59.900 61.111 26.68 9.50 42.50 3.61
474 475 2.100216 CCGATTTTCGCCGGCTTG 59.900 61.111 26.68 10.37 38.82 4.01
475 476 3.131478 CCCGATTTTCGCCGGCTT 61.131 61.111 26.68 3.40 44.07 4.35
478 479 3.573491 GAGCCCGATTTTCGCCGG 61.573 66.667 0.00 0.00 44.94 6.13
479 480 3.573491 GGAGCCCGATTTTCGCCG 61.573 66.667 0.00 0.00 38.82 6.46
480 481 2.124695 AGGAGCCCGATTTTCGCC 60.125 61.111 0.00 0.00 38.82 5.54
481 482 2.472909 CCAGGAGCCCGATTTTCGC 61.473 63.158 0.00 0.00 38.82 4.70
482 483 1.819632 CCCAGGAGCCCGATTTTCG 60.820 63.158 0.00 0.00 40.07 3.46
483 484 1.453928 CCCCAGGAGCCCGATTTTC 60.454 63.158 0.00 0.00 0.00 2.29
484 485 2.683475 CCCCAGGAGCCCGATTTT 59.317 61.111 0.00 0.00 0.00 1.82
485 486 3.420482 CCCCCAGGAGCCCGATTT 61.420 66.667 0.00 0.00 33.47 2.17
503 504 2.032185 GAATAAACGGCCCAGTCGCG 62.032 60.000 0.00 0.00 32.11 5.87
504 505 1.719709 GAATAAACGGCCCAGTCGC 59.280 57.895 0.00 0.00 32.11 5.19
505 506 1.426041 CCGAATAAACGGCCCAGTCG 61.426 60.000 0.00 0.33 46.20 4.18
506 507 2.390427 CCGAATAAACGGCCCAGTC 58.610 57.895 0.00 0.00 46.20 3.51
507 508 4.629779 CCGAATAAACGGCCCAGT 57.370 55.556 0.00 0.00 46.20 4.00
514 515 2.022762 GCTGGCGCCGAATAAACG 59.977 61.111 23.90 3.28 0.00 3.60
515 516 2.022762 CGCTGGCGCCGAATAAAC 59.977 61.111 23.90 4.48 0.00 2.01
536 537 0.323451 GGTCTCCCCAGGCGATTTTT 60.323 55.000 0.00 0.00 0.00 1.94
537 538 1.208165 AGGTCTCCCCAGGCGATTTT 61.208 55.000 0.00 0.00 34.66 1.82
538 539 1.208165 AAGGTCTCCCCAGGCGATTT 61.208 55.000 0.00 0.00 34.66 2.17
539 540 1.208165 AAAGGTCTCCCCAGGCGATT 61.208 55.000 0.00 0.00 34.66 3.34
540 541 1.208165 AAAAGGTCTCCCCAGGCGAT 61.208 55.000 0.00 0.00 34.66 4.58
541 542 1.423794 AAAAAGGTCTCCCCAGGCGA 61.424 55.000 0.00 0.00 34.66 5.54
542 543 1.074951 AAAAAGGTCTCCCCAGGCG 59.925 57.895 0.00 0.00 34.66 5.52
543 544 0.900182 CCAAAAAGGTCTCCCCAGGC 60.900 60.000 0.00 0.00 34.66 4.85
544 545 0.251787 CCCAAAAAGGTCTCCCCAGG 60.252 60.000 0.00 0.00 34.66 4.45
545 546 0.251787 CCCCAAAAAGGTCTCCCCAG 60.252 60.000 0.00 0.00 34.66 4.45
546 547 1.857777 CCCCAAAAAGGTCTCCCCA 59.142 57.895 0.00 0.00 34.66 4.96
547 548 1.609501 GCCCCAAAAAGGTCTCCCC 60.610 63.158 0.00 0.00 34.66 4.81
548 549 1.977009 CGCCCCAAAAAGGTCTCCC 60.977 63.158 0.00 0.00 34.66 4.30
549 550 2.636412 GCGCCCCAAAAAGGTCTCC 61.636 63.158 0.00 0.00 34.66 3.71
550 551 2.962569 GCGCCCCAAAAAGGTCTC 59.037 61.111 0.00 0.00 34.66 3.36
551 552 2.983592 CGCGCCCCAAAAAGGTCT 60.984 61.111 0.00 0.00 34.66 3.85
552 553 4.050934 CCGCGCCCCAAAAAGGTC 62.051 66.667 0.00 0.00 34.66 3.85
555 556 4.722855 CAGCCGCGCCCCAAAAAG 62.723 66.667 0.00 0.00 0.00 2.27
564 565 4.527157 GTGCATCTTCAGCCGCGC 62.527 66.667 0.00 0.00 0.00 6.86
565 566 1.083806 TAAGTGCATCTTCAGCCGCG 61.084 55.000 0.00 0.00 37.56 6.46
566 567 0.375106 GTAAGTGCATCTTCAGCCGC 59.625 55.000 5.04 0.00 37.56 6.53
567 568 1.394917 GTGTAAGTGCATCTTCAGCCG 59.605 52.381 5.04 0.00 37.56 5.52
568 569 1.394917 CGTGTAAGTGCATCTTCAGCC 59.605 52.381 5.04 0.00 37.56 4.85
569 570 2.337583 TCGTGTAAGTGCATCTTCAGC 58.662 47.619 5.04 0.00 37.56 4.26
570 571 3.181526 GCTTCGTGTAAGTGCATCTTCAG 60.182 47.826 5.04 0.00 37.53 3.02
571 572 2.736721 GCTTCGTGTAAGTGCATCTTCA 59.263 45.455 5.04 2.50 37.53 3.02
572 573 2.996621 AGCTTCGTGTAAGTGCATCTTC 59.003 45.455 5.04 0.43 37.53 2.87
573 574 2.996621 GAGCTTCGTGTAAGTGCATCTT 59.003 45.455 0.00 0.00 37.53 2.40
574 575 2.029020 TGAGCTTCGTGTAAGTGCATCT 60.029 45.455 0.00 0.00 37.53 2.90
575 576 2.092838 GTGAGCTTCGTGTAAGTGCATC 59.907 50.000 0.00 0.00 37.53 3.91
576 577 2.069273 GTGAGCTTCGTGTAAGTGCAT 58.931 47.619 0.00 0.00 37.53 3.96
577 578 1.202475 TGTGAGCTTCGTGTAAGTGCA 60.202 47.619 0.00 0.00 37.53 4.57
578 579 1.192534 GTGTGAGCTTCGTGTAAGTGC 59.807 52.381 0.00 0.00 37.53 4.40
579 580 1.452025 CGTGTGAGCTTCGTGTAAGTG 59.548 52.381 0.00 0.00 37.53 3.16
580 581 1.602165 CCGTGTGAGCTTCGTGTAAGT 60.602 52.381 0.00 0.00 37.53 2.24
581 582 1.060713 CCGTGTGAGCTTCGTGTAAG 58.939 55.000 0.00 0.00 38.32 2.34
582 583 0.942410 GCCGTGTGAGCTTCGTGTAA 60.942 55.000 0.00 0.00 0.00 2.41
583 584 1.372499 GCCGTGTGAGCTTCGTGTA 60.372 57.895 0.00 0.00 0.00 2.90
612 614 0.804989 GCTGAAGGACATGGTTTCCG 59.195 55.000 0.00 0.00 38.29 4.30
652 654 4.644234 TCAGACAAGGCAGAGAGATAAGAG 59.356 45.833 0.00 0.00 0.00 2.85
683 690 0.188342 AGTGGGCCATGGTTTTGTCT 59.812 50.000 10.70 0.00 0.00 3.41
795 811 2.202395 GGAGCAAAACAGGCAGCCA 61.202 57.895 15.80 0.00 0.00 4.75
799 816 3.294493 GCCGGAGCAAAACAGGCA 61.294 61.111 5.05 0.00 45.21 4.75
876 901 3.001431 CAGAGCTGATTCGCTGAATTGAG 59.999 47.826 0.00 0.00 41.08 3.02
900 940 2.349532 GCGAAGTTGTGGTACTGAAAGC 60.350 50.000 0.00 0.00 37.60 3.51
1144 1228 2.270205 CTTGGTGCCCTGCGAGAT 59.730 61.111 0.00 0.00 0.00 2.75
1289 1715 0.732571 ACAAACTGCAACGGACACAG 59.267 50.000 0.00 0.00 37.45 3.66
1323 1763 5.049474 TGCTGTATTTACAATCGATCATGGC 60.049 40.000 0.00 0.00 35.50 4.40
1386 1878 0.253347 ACATGGACAGGGAGGGTGAT 60.253 55.000 0.00 0.00 0.00 3.06
1387 1879 1.160870 ACATGGACAGGGAGGGTGA 59.839 57.895 0.00 0.00 0.00 4.02
1396 1888 3.668447 AGTTACAGAAGCACATGGACAG 58.332 45.455 0.00 0.00 0.00 3.51
1414 1910 4.223144 ACACTGGGCCTTTCAAAATAGTT 58.777 39.130 4.53 0.00 0.00 2.24
1433 1935 4.816385 TCCTCTCTTGACAAACATCAACAC 59.184 41.667 0.00 0.00 34.84 3.32
1434 1936 5.034852 TCCTCTCTTGACAAACATCAACA 57.965 39.130 0.00 0.00 34.84 3.33
1472 1977 2.203181 GAGCTGCTCTCCCCATGC 60.203 66.667 21.93 0.00 35.77 4.06
1486 1992 2.095768 TGTATGCTTCGTTTTGCTGAGC 60.096 45.455 0.00 0.00 0.00 4.26
1500 2006 7.168219 TGAAGTTCCTATGTTTTCTGTATGCT 58.832 34.615 0.00 0.00 0.00 3.79
1515 2030 1.003464 TGCATGCAGCTGAAGTTCCTA 59.997 47.619 18.46 0.00 45.94 2.94
1607 4912 6.010294 AGAAGATGTGAAATCTTGCACTTG 57.990 37.500 1.87 0.00 38.38 3.16
1608 4913 6.645790 AAGAAGATGTGAAATCTTGCACTT 57.354 33.333 1.87 0.00 38.38 3.16
1609 4914 6.263842 TCAAAGAAGATGTGAAATCTTGCACT 59.736 34.615 1.87 0.00 38.38 4.40
1610 4915 6.441274 TCAAAGAAGATGTGAAATCTTGCAC 58.559 36.000 1.87 0.00 38.38 4.57
1611 4916 6.638096 TCAAAGAAGATGTGAAATCTTGCA 57.362 33.333 1.87 0.00 38.38 4.08
1612 4917 7.310664 TGATCAAAGAAGATGTGAAATCTTGC 58.689 34.615 1.87 0.00 38.38 4.01
1669 4981 6.089551 CACAAAGATATAATCTCTAACGGCCG 59.910 42.308 26.86 26.86 39.08 6.13
1750 5121 1.446099 GATCTCGTCGCCTGCACAA 60.446 57.895 0.00 0.00 0.00 3.33
1757 5128 3.032609 CGCCATGATCTCGTCGCC 61.033 66.667 0.00 0.00 0.00 5.54
1769 5144 2.945080 ATTCAGATCATGTCCGCCAT 57.055 45.000 0.00 0.00 0.00 4.40
1775 5150 5.126707 AGGGCAAAGAAATTCAGATCATGTC 59.873 40.000 0.00 0.00 0.00 3.06
1781 5156 3.056322 GTGCAGGGCAAAGAAATTCAGAT 60.056 43.478 0.00 0.00 41.47 2.90
1803 5178 1.751351 TCTCGTGTCCCTTGAGCATAG 59.249 52.381 0.00 0.00 0.00 2.23
1804 5179 1.847328 TCTCGTGTCCCTTGAGCATA 58.153 50.000 0.00 0.00 0.00 3.14
1805 5180 1.137872 GATCTCGTGTCCCTTGAGCAT 59.862 52.381 0.00 0.00 0.00 3.79
1839 5937 3.317993 TCAACGTCATCACTCTGTTCAGA 59.682 43.478 2.49 2.49 0.00 3.27
1844 5942 4.923871 GTGTTATCAACGTCATCACTCTGT 59.076 41.667 0.00 0.00 0.00 3.41
1944 6053 1.212455 CGCATATTCTACACGGCGCA 61.212 55.000 10.83 0.00 37.96 6.09
1976 6085 2.515523 ATGGCCGTCTGCTCATGC 60.516 61.111 0.00 0.00 40.92 4.06
1977 6086 2.184830 CCATGGCCGTCTGCTCATG 61.185 63.158 0.00 9.31 42.99 3.07
1978 6087 2.191375 CCATGGCCGTCTGCTCAT 59.809 61.111 0.00 0.00 40.92 2.90
1979 6088 3.321648 ACCATGGCCGTCTGCTCA 61.322 61.111 13.04 0.00 40.92 4.26
1980 6089 2.821366 CACCATGGCCGTCTGCTC 60.821 66.667 13.04 0.00 40.92 4.26
1981 6090 3.612247 GACACCATGGCCGTCTGCT 62.612 63.158 22.01 2.02 40.92 4.24
1982 6091 3.127533 GACACCATGGCCGTCTGC 61.128 66.667 22.01 2.83 40.16 4.26
1983 6092 1.742880 CTGACACCATGGCCGTCTG 60.743 63.158 26.73 23.51 0.00 3.51
1984 6093 2.665000 CTGACACCATGGCCGTCT 59.335 61.111 26.73 1.48 0.00 4.18
1985 6094 2.257409 ATCCTGACACCATGGCCGTC 62.257 60.000 22.35 22.35 0.00 4.79
1989 6098 1.524621 CCGATCCTGACACCATGGC 60.525 63.158 13.04 0.00 0.00 4.40
1990 6099 0.179073 GACCGATCCTGACACCATGG 60.179 60.000 11.19 11.19 0.00 3.66
2013 7740 5.632034 AGGGTTAGTCTGAGTCTGTTTTT 57.368 39.130 0.00 0.00 0.00 1.94
2015 7742 4.262079 CGAAGGGTTAGTCTGAGTCTGTTT 60.262 45.833 0.00 0.00 0.00 2.83
2020 7747 3.367190 GGTTCGAAGGGTTAGTCTGAGTC 60.367 52.174 0.00 0.00 0.00 3.36
2022 7749 2.415625 CGGTTCGAAGGGTTAGTCTGAG 60.416 54.545 0.00 0.00 0.00 3.35
2023 7750 1.542915 CGGTTCGAAGGGTTAGTCTGA 59.457 52.381 0.00 0.00 0.00 3.27
2024 7751 1.403780 CCGGTTCGAAGGGTTAGTCTG 60.404 57.143 0.00 0.00 0.00 3.51
2028 7755 0.893447 AGACCGGTTCGAAGGGTTAG 59.107 55.000 18.88 0.21 33.28 2.34
2033 7760 3.058708 GGTTTTTAAGACCGGTTCGAAGG 60.059 47.826 9.42 0.00 0.00 3.46
2044 7771 2.751259 GGTCATCCCCGGTTTTTAAGAC 59.249 50.000 0.00 0.00 0.00 3.01
2045 7772 2.375845 TGGTCATCCCCGGTTTTTAAGA 59.624 45.455 0.00 0.00 0.00 2.10
2047 7774 2.797786 CTGGTCATCCCCGGTTTTTAA 58.202 47.619 0.00 0.00 0.00 1.52
2049 7776 0.898326 GCTGGTCATCCCCGGTTTTT 60.898 55.000 0.00 0.00 33.07 1.94
2050 7777 1.304134 GCTGGTCATCCCCGGTTTT 60.304 57.895 0.00 0.00 33.07 2.43
2051 7778 1.863155 ATGCTGGTCATCCCCGGTTT 61.863 55.000 0.00 0.00 33.07 3.27
2052 7779 2.270874 GATGCTGGTCATCCCCGGTT 62.271 60.000 0.00 0.00 44.54 4.44
2062 7789 2.028567 GCTAGACATAGGGATGCTGGTC 60.029 54.545 0.00 0.00 36.43 4.02
2063 7790 1.974236 GCTAGACATAGGGATGCTGGT 59.026 52.381 0.00 0.00 36.43 4.00
2064 7791 2.233431 GAGCTAGACATAGGGATGCTGG 59.767 54.545 0.00 0.00 36.43 4.85
2065 7792 2.896044 TGAGCTAGACATAGGGATGCTG 59.104 50.000 0.00 0.00 36.43 4.41
2066 7793 3.251016 TGAGCTAGACATAGGGATGCT 57.749 47.619 0.00 0.00 36.43 3.79
2067 7794 4.342862 TTTGAGCTAGACATAGGGATGC 57.657 45.455 0.00 0.00 36.43 3.91
2069 7796 4.835615 ACGATTTGAGCTAGACATAGGGAT 59.164 41.667 0.00 0.00 0.00 3.85
2071 7798 4.592485 ACGATTTGAGCTAGACATAGGG 57.408 45.455 0.00 0.00 0.00 3.53
2072 7799 5.336055 CCCTACGATTTGAGCTAGACATAGG 60.336 48.000 0.00 1.20 0.00 2.57
2073 7800 5.241949 ACCCTACGATTTGAGCTAGACATAG 59.758 44.000 0.00 0.00 0.00 2.23
2078 7805 2.693591 CCACCCTACGATTTGAGCTAGA 59.306 50.000 0.00 0.00 0.00 2.43
2081 7808 1.568504 TCCACCCTACGATTTGAGCT 58.431 50.000 0.00 0.00 0.00 4.09
2082 7809 2.622064 ATCCACCCTACGATTTGAGC 57.378 50.000 0.00 0.00 0.00 4.26
2083 7810 6.127591 CCTCTATATCCACCCTACGATTTGAG 60.128 46.154 0.00 0.00 0.00 3.02
2084 7811 5.715279 CCTCTATATCCACCCTACGATTTGA 59.285 44.000 0.00 0.00 0.00 2.69
2085 7812 5.624738 GCCTCTATATCCACCCTACGATTTG 60.625 48.000 0.00 0.00 0.00 2.32
2088 7815 3.633418 GCCTCTATATCCACCCTACGAT 58.367 50.000 0.00 0.00 0.00 3.73
2089 7816 2.617276 CGCCTCTATATCCACCCTACGA 60.617 54.545 0.00 0.00 0.00 3.43
2090 7817 1.743958 CGCCTCTATATCCACCCTACG 59.256 57.143 0.00 0.00 0.00 3.51
2092 7819 2.291411 GGACGCCTCTATATCCACCCTA 60.291 54.545 0.00 0.00 0.00 3.53
2093 7820 1.550409 GGACGCCTCTATATCCACCCT 60.550 57.143 0.00 0.00 0.00 4.34
2094 7821 0.896226 GGACGCCTCTATATCCACCC 59.104 60.000 0.00 0.00 0.00 4.61
2095 7822 0.526662 CGGACGCCTCTATATCCACC 59.473 60.000 0.00 0.00 0.00 4.61
2096 7823 1.199558 GACGGACGCCTCTATATCCAC 59.800 57.143 0.00 0.00 0.00 4.02
2097 7824 1.202842 TGACGGACGCCTCTATATCCA 60.203 52.381 0.00 0.00 0.00 3.41
2098 7825 1.199558 GTGACGGACGCCTCTATATCC 59.800 57.143 0.00 0.00 0.00 2.59
2099 7826 1.878088 TGTGACGGACGCCTCTATATC 59.122 52.381 0.00 0.00 0.00 1.63
2100 7827 1.977056 TGTGACGGACGCCTCTATAT 58.023 50.000 0.00 0.00 0.00 0.86
2101 7828 1.878088 GATGTGACGGACGCCTCTATA 59.122 52.381 0.00 0.00 0.00 1.31
2103 7830 1.712018 CGATGTGACGGACGCCTCTA 61.712 60.000 0.00 0.00 0.00 2.43
2104 7831 2.885861 GATGTGACGGACGCCTCT 59.114 61.111 0.00 0.00 0.00 3.69
2105 7832 2.579787 CGATGTGACGGACGCCTC 60.580 66.667 0.00 0.00 0.00 4.70
2113 7840 0.732880 GTGTCAGGTCCGATGTGACG 60.733 60.000 4.92 0.00 42.98 4.35
2114 7841 0.389948 GGTGTCAGGTCCGATGTGAC 60.390 60.000 2.68 2.68 40.89 3.67
2115 7842 1.541310 GGGTGTCAGGTCCGATGTGA 61.541 60.000 0.00 0.00 0.00 3.58
2118 7845 0.747255 CTAGGGTGTCAGGTCCGATG 59.253 60.000 0.00 0.00 0.00 3.84
2119 7846 1.043673 GCTAGGGTGTCAGGTCCGAT 61.044 60.000 0.00 0.00 0.00 4.18
2120 7847 1.681327 GCTAGGGTGTCAGGTCCGA 60.681 63.158 0.00 0.00 0.00 4.55
2121 7848 2.722201 GGCTAGGGTGTCAGGTCCG 61.722 68.421 0.00 0.00 0.00 4.79
2122 7849 2.368011 GGGCTAGGGTGTCAGGTCC 61.368 68.421 0.00 0.00 0.00 4.46
2123 7850 1.612442 TGGGCTAGGGTGTCAGGTC 60.612 63.158 0.00 0.00 0.00 3.85
2125 7852 0.325296 TAGTGGGCTAGGGTGTCAGG 60.325 60.000 0.00 0.00 0.00 3.86
2127 7854 0.115547 TGTAGTGGGCTAGGGTGTCA 59.884 55.000 0.00 0.00 0.00 3.58
2130 7857 3.366052 AATTTGTAGTGGGCTAGGGTG 57.634 47.619 0.00 0.00 0.00 4.61
2132 7859 4.497291 TGTAATTTGTAGTGGGCTAGGG 57.503 45.455 0.00 0.00 0.00 3.53
2133 7860 5.680619 TGATGTAATTTGTAGTGGGCTAGG 58.319 41.667 0.00 0.00 0.00 3.02
2134 7861 7.624360 TTTGATGTAATTTGTAGTGGGCTAG 57.376 36.000 0.00 0.00 0.00 3.42
2135 7862 7.284489 GGATTTGATGTAATTTGTAGTGGGCTA 59.716 37.037 0.00 0.00 0.00 3.93
2136 7863 6.096846 GGATTTGATGTAATTTGTAGTGGGCT 59.903 38.462 0.00 0.00 0.00 5.19
2137 7864 6.127479 TGGATTTGATGTAATTTGTAGTGGGC 60.127 38.462 0.00 0.00 0.00 5.36
2138 7865 7.403312 TGGATTTGATGTAATTTGTAGTGGG 57.597 36.000 0.00 0.00 0.00 4.61
2140 7867 8.137437 GGGATGGATTTGATGTAATTTGTAGTG 58.863 37.037 0.00 0.00 0.00 2.74
2143 7870 7.361438 AGGGGATGGATTTGATGTAATTTGTA 58.639 34.615 0.00 0.00 0.00 2.41
2144 7871 6.204555 AGGGGATGGATTTGATGTAATTTGT 58.795 36.000 0.00 0.00 0.00 2.83
2147 7874 5.072741 CGAGGGGATGGATTTGATGTAATT 58.927 41.667 0.00 0.00 0.00 1.40
2148 7875 4.507335 CCGAGGGGATGGATTTGATGTAAT 60.507 45.833 0.00 0.00 34.06 1.89
2149 7876 3.181445 CCGAGGGGATGGATTTGATGTAA 60.181 47.826 0.00 0.00 34.06 2.41
2150 7877 2.371841 CCGAGGGGATGGATTTGATGTA 59.628 50.000 0.00 0.00 34.06 2.29
2151 7878 1.143684 CCGAGGGGATGGATTTGATGT 59.856 52.381 0.00 0.00 34.06 3.06
2152 7879 1.901591 CCGAGGGGATGGATTTGATG 58.098 55.000 0.00 0.00 34.06 3.07
2153 7880 0.111253 GCCGAGGGGATGGATTTGAT 59.889 55.000 0.00 0.00 34.06 2.57
2154 7881 1.531748 GCCGAGGGGATGGATTTGA 59.468 57.895 0.00 0.00 34.06 2.69
2156 7883 0.401395 TAGGCCGAGGGGATGGATTT 60.401 55.000 0.00 0.00 34.06 2.17
2157 7884 1.128188 GTAGGCCGAGGGGATGGATT 61.128 60.000 0.00 0.00 34.06 3.01
2158 7885 1.536662 GTAGGCCGAGGGGATGGAT 60.537 63.158 0.00 0.00 34.06 3.41
2159 7886 2.122989 GTAGGCCGAGGGGATGGA 60.123 66.667 0.00 0.00 34.06 3.41
2162 7889 0.104934 ATGAAGTAGGCCGAGGGGAT 60.105 55.000 0.00 0.00 34.06 3.85
2163 7890 0.759436 GATGAAGTAGGCCGAGGGGA 60.759 60.000 0.00 0.00 34.06 4.81
2166 7893 0.390860 CTGGATGAAGTAGGCCGAGG 59.609 60.000 0.00 0.00 0.00 4.63
2168 7895 0.687757 AGCTGGATGAAGTAGGCCGA 60.688 55.000 0.00 0.00 0.00 5.54
2169 7896 0.531532 CAGCTGGATGAAGTAGGCCG 60.532 60.000 5.57 0.00 0.00 6.13
2170 7897 0.817229 GCAGCTGGATGAAGTAGGCC 60.817 60.000 17.12 0.00 0.00 5.19
2172 7899 0.179034 GGGCAGCTGGATGAAGTAGG 60.179 60.000 17.12 0.00 0.00 3.18
2173 7900 0.835941 AGGGCAGCTGGATGAAGTAG 59.164 55.000 17.12 0.00 0.00 2.57
2174 7901 0.833287 GAGGGCAGCTGGATGAAGTA 59.167 55.000 17.12 0.00 0.00 2.24
2175 7902 0.913451 AGAGGGCAGCTGGATGAAGT 60.913 55.000 17.12 0.00 0.00 3.01
2177 7904 1.630126 GGAGAGGGCAGCTGGATGAA 61.630 60.000 17.12 0.00 0.00 2.57
2178 7905 2.068821 GGAGAGGGCAGCTGGATGA 61.069 63.158 17.12 0.00 0.00 2.92
2179 7906 2.042404 GAGGAGAGGGCAGCTGGATG 62.042 65.000 17.12 0.00 0.00 3.51
2180 7907 1.765657 GAGGAGAGGGCAGCTGGAT 60.766 63.158 17.12 0.00 0.00 3.41
2181 7908 2.364842 GAGGAGAGGGCAGCTGGA 60.365 66.667 17.12 0.00 0.00 3.86
2182 7909 2.365370 AGAGGAGAGGGCAGCTGG 60.365 66.667 17.12 0.00 0.00 4.85
2183 7910 0.977108 AAGAGAGGAGAGGGCAGCTG 60.977 60.000 10.11 10.11 0.00 4.24
2184 7911 0.687427 GAAGAGAGGAGAGGGCAGCT 60.687 60.000 0.00 0.00 0.00 4.24
2185 7912 0.687427 AGAAGAGAGGAGAGGGCAGC 60.687 60.000 0.00 0.00 0.00 5.25
2189 7916 2.666317 GAGGAAGAAGAGAGGAGAGGG 58.334 57.143 0.00 0.00 0.00 4.30
2190 7917 2.244769 AGGAGGAAGAAGAGAGGAGAGG 59.755 54.545 0.00 0.00 0.00 3.69
2192 7919 2.092646 CGAGGAGGAAGAAGAGAGGAGA 60.093 54.545 0.00 0.00 0.00 3.71
2193 7920 2.297701 CGAGGAGGAAGAAGAGAGGAG 58.702 57.143 0.00 0.00 0.00 3.69
2195 7922 0.744281 GCGAGGAGGAAGAAGAGAGG 59.256 60.000 0.00 0.00 0.00 3.69
2197 7924 2.483441 CGCGAGGAGGAAGAAGAGA 58.517 57.895 0.00 0.00 0.00 3.10
2219 7946 1.144057 AAGGATGGCATCGGACGTC 59.856 57.895 20.50 7.13 37.34 4.34
2220 7947 1.153369 CAAGGATGGCATCGGACGT 60.153 57.895 20.50 3.31 0.00 4.34
2221 7948 2.537560 GCAAGGATGGCATCGGACG 61.538 63.158 20.50 10.30 32.79 4.79
2222 7949 1.153086 AGCAAGGATGGCATCGGAC 60.153 57.895 20.50 10.28 37.68 4.79
2223 7950 1.146930 GAGCAAGGATGGCATCGGA 59.853 57.895 20.50 0.00 37.68 4.55
2224 7951 1.895707 GGAGCAAGGATGGCATCGG 60.896 63.158 20.50 13.52 37.68 4.18
2226 7953 3.741860 CGGAGCAAGGATGGCATC 58.258 61.111 19.23 19.23 37.68 3.91
2239 7966 2.579787 CTCGTAACGGCTGCGGAG 60.580 66.667 14.45 0.00 33.40 4.63
2240 7967 4.789075 GCTCGTAACGGCTGCGGA 62.789 66.667 14.45 0.00 33.40 5.54
2243 7970 2.552585 TAGTGGCTCGTAACGGCTGC 62.553 60.000 0.00 0.00 0.00 5.25
2244 7971 0.801067 GTAGTGGCTCGTAACGGCTG 60.801 60.000 0.00 0.00 0.00 4.85
2245 7972 1.246056 TGTAGTGGCTCGTAACGGCT 61.246 55.000 0.00 0.00 0.00 5.52
2246 7973 1.074872 GTGTAGTGGCTCGTAACGGC 61.075 60.000 0.00 0.00 0.00 5.68
2247 7974 0.524862 AGTGTAGTGGCTCGTAACGG 59.475 55.000 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.