Multiple sequence alignment - TraesCS2B01G561100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G561100 chr2B 100.000 2273 0 0 1 2273 753985896 753988168 0.000000e+00 4198.0
1 TraesCS2B01G561100 chr2B 84.596 779 77 23 1421 2174 754001626 754002386 0.000000e+00 734.0
2 TraesCS2B01G561100 chr2B 92.141 369 27 1 914 1280 754001207 754001575 9.310000e-144 520.0
3 TraesCS2B01G561100 chr2B 89.899 297 29 1 994 1290 753952470 753952765 4.580000e-102 381.0
4 TraesCS2B01G561100 chr2B 89.286 280 27 1 994 1273 753974084 753974360 4.650000e-92 348.0
5 TraesCS2B01G561100 chr2B 88.929 280 31 0 994 1273 708863274 708862995 1.670000e-91 346.0
6 TraesCS2B01G561100 chr2B 92.000 225 18 0 1952 2176 754010317 754010541 1.310000e-82 316.0
7 TraesCS2B01G561100 chr2B 90.104 192 11 3 724 915 754000930 754001113 2.260000e-60 243.0
8 TraesCS2B01G561100 chr2B 90.303 165 14 2 186 349 329141586 329141749 4.920000e-52 215.0
9 TraesCS2B01G561100 chr2A 86.733 701 57 15 1479 2176 748541205 748541872 0.000000e+00 747.0
10 TraesCS2B01G561100 chr2A 85.519 732 79 20 1394 2116 748549354 748550067 0.000000e+00 739.0
11 TraesCS2B01G561100 chr2A 84.639 664 72 19 1421 2078 748528470 748529109 3.190000e-178 634.0
12 TraesCS2B01G561100 chr2A 91.765 340 26 2 953 1290 748537808 748538147 2.640000e-129 472.0
13 TraesCS2B01G561100 chr2A 79.043 773 82 35 1421 2168 748533806 748534523 7.400000e-125 457.0
14 TraesCS2B01G561100 chr2A 89.308 318 34 0 953 1270 748528028 748528345 1.260000e-107 399.0
15 TraesCS2B01G561100 chr2A 83.603 433 39 15 486 915 748537262 748537665 5.930000e-101 377.0
16 TraesCS2B01G561100 chr2A 90.270 185 17 1 1 184 748545521 748545705 8.110000e-60 241.0
17 TraesCS2B01G561100 chr2A 86.301 73 7 2 395 465 748527558 748527629 2.420000e-10 76.8
18 TraesCS2B01G561100 chr2A 81.053 95 11 5 395 487 748537133 748537222 4.050000e-08 69.4
19 TraesCS2B01G561100 chr2A 90.196 51 5 0 2175 2225 748541895 748541945 1.460000e-07 67.6
20 TraesCS2B01G561100 chr2D 92.256 297 19 2 994 1287 617957693 617957988 3.490000e-113 418.0
21 TraesCS2B01G561100 chr2D 89.531 277 29 0 997 1273 587111820 587111544 3.590000e-93 351.0
22 TraesCS2B01G561100 chr2D 87.119 295 37 1 996 1290 617973047 617973340 1.300000e-87 333.0
23 TraesCS2B01G561100 chr2D 89.100 211 18 4 1873 2078 618003342 618003552 8.060000e-65 257.0
24 TraesCS2B01G561100 chr2D 89.637 193 16 3 726 915 617994833 617995024 2.260000e-60 243.0
25 TraesCS2B01G561100 chr2D 87.912 91 5 4 395 480 617994455 617994544 3.990000e-18 102.0
26 TraesCS2B01G561100 chr3B 92.661 109 8 0 1294 1402 779136948 779136840 8.410000e-35 158.0
27 TraesCS2B01G561100 chr3B 81.081 111 16 5 180 287 433578751 433578643 1.450000e-12 84.2
28 TraesCS2B01G561100 chr7B 93.204 103 7 0 1294 1396 521569935 521569833 3.910000e-33 152.0
29 TraesCS2B01G561100 chr7B 73.991 223 55 3 180 400 232761362 232761141 1.120000e-13 87.9
30 TraesCS2B01G561100 chr7B 74.074 162 38 4 245 403 45262535 45262375 1.880000e-06 63.9
31 TraesCS2B01G561100 chr7A 92.157 102 8 0 1294 1395 37008422 37008321 6.540000e-31 145.0
32 TraesCS2B01G561100 chr5B 91.429 105 9 0 1294 1398 558557370 558557266 6.540000e-31 145.0
33 TraesCS2B01G561100 chr7D 90.654 107 10 0 1289 1395 176126424 176126530 2.350000e-30 143.0
34 TraesCS2B01G561100 chr7D 88.182 110 13 0 1294 1403 446942198 446942089 5.090000e-27 132.0
35 TraesCS2B01G561100 chr7D 73.874 222 55 3 181 400 430112082 430112302 4.020000e-13 86.1
36 TraesCS2B01G561100 chr1B 88.793 116 13 0 1288 1403 278934443 278934558 2.350000e-30 143.0
37 TraesCS2B01G561100 chr1D 91.176 102 9 0 1294 1395 73714959 73714858 3.040000e-29 139.0
38 TraesCS2B01G561100 chr4B 89.524 105 11 0 1294 1398 562324366 562324262 1.420000e-27 134.0
39 TraesCS2B01G561100 chr6B 73.182 220 56 3 182 399 534956448 534956230 2.420000e-10 76.8
40 TraesCS2B01G561100 chr1A 93.182 44 3 0 357 400 403636412 403636369 5.240000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G561100 chr2B 753985896 753988168 2272 False 4198.000000 4198 100.000000 1 2273 1 chr2B.!!$F4 2272
1 TraesCS2B01G561100 chr2B 754000930 754002386 1456 False 499.000000 734 88.947000 724 2174 3 chr2B.!!$F6 1450
2 TraesCS2B01G561100 chr2A 748533806 748550067 16261 False 396.250000 747 86.022750 1 2225 8 chr2A.!!$F2 2224
3 TraesCS2B01G561100 chr2A 748527558 748529109 1551 False 369.933333 634 86.749333 395 2078 3 chr2A.!!$F1 1683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
785 3995 0.033228 CTCGCAATGGCCAAAACCAA 59.967 50.0 10.96 0.0 44.65 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2200 16876 0.041839 GTGTGAGCTTGCTGTCAACG 60.042 55.0 0.0 0.0 0.0 4.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 3202 6.849588 AAAAACATGGAAATGAAGAGCAAC 57.150 33.333 0.00 0.00 0.00 4.17
53 3203 5.534207 AAACATGGAAATGAAGAGCAACA 57.466 34.783 0.00 0.00 0.00 3.33
54 3204 5.534207 AACATGGAAATGAAGAGCAACAA 57.466 34.783 0.00 0.00 0.00 2.83
84 3235 5.536260 TGGTCAAAATGAATGAATTTGCGA 58.464 33.333 0.00 0.00 34.77 5.10
97 3248 9.134734 GAATGAATTTGCGAACAACCTTTTATA 57.865 29.630 0.00 0.00 34.87 0.98
98 3249 9.651913 AATGAATTTGCGAACAACCTTTTATAT 57.348 25.926 0.00 0.00 34.87 0.86
190 3341 8.980481 TTGAATTTTATCAGATTACTCCCTCC 57.020 34.615 0.00 0.00 0.00 4.30
191 3342 7.217200 TGAATTTTATCAGATTACTCCCTCCG 58.783 38.462 0.00 0.00 0.00 4.63
192 3343 6.749036 ATTTTATCAGATTACTCCCTCCGT 57.251 37.500 0.00 0.00 0.00 4.69
193 3344 5.786264 TTTATCAGATTACTCCCTCCGTC 57.214 43.478 0.00 0.00 0.00 4.79
194 3345 3.603965 ATCAGATTACTCCCTCCGTCT 57.396 47.619 0.00 0.00 0.00 4.18
195 3346 2.933573 TCAGATTACTCCCTCCGTCTC 58.066 52.381 0.00 0.00 0.00 3.36
196 3347 2.241430 TCAGATTACTCCCTCCGTCTCA 59.759 50.000 0.00 0.00 0.00 3.27
197 3348 2.621055 CAGATTACTCCCTCCGTCTCAG 59.379 54.545 0.00 0.00 0.00 3.35
198 3349 2.242708 AGATTACTCCCTCCGTCTCAGT 59.757 50.000 0.00 0.00 0.00 3.41
199 3350 2.599408 TTACTCCCTCCGTCTCAGTT 57.401 50.000 0.00 0.00 0.00 3.16
200 3351 2.599408 TACTCCCTCCGTCTCAGTTT 57.401 50.000 0.00 0.00 0.00 2.66
201 3352 2.599408 ACTCCCTCCGTCTCAGTTTA 57.401 50.000 0.00 0.00 0.00 2.01
202 3353 3.103080 ACTCCCTCCGTCTCAGTTTAT 57.897 47.619 0.00 0.00 0.00 1.40
203 3354 4.246712 ACTCCCTCCGTCTCAGTTTATA 57.753 45.455 0.00 0.00 0.00 0.98
204 3355 4.607239 ACTCCCTCCGTCTCAGTTTATAA 58.393 43.478 0.00 0.00 0.00 0.98
205 3356 4.645588 ACTCCCTCCGTCTCAGTTTATAAG 59.354 45.833 0.00 0.00 0.00 1.73
206 3357 3.958798 TCCCTCCGTCTCAGTTTATAAGG 59.041 47.826 0.00 0.00 0.00 2.69
207 3358 3.492829 CCCTCCGTCTCAGTTTATAAGGC 60.493 52.174 0.00 0.00 0.00 4.35
208 3359 3.132289 CCTCCGTCTCAGTTTATAAGGCA 59.868 47.826 0.00 0.00 0.00 4.75
209 3360 4.202264 CCTCCGTCTCAGTTTATAAGGCAT 60.202 45.833 0.00 0.00 0.00 4.40
210 3361 5.010719 CCTCCGTCTCAGTTTATAAGGCATA 59.989 44.000 0.00 0.00 0.00 3.14
211 3362 5.839621 TCCGTCTCAGTTTATAAGGCATAC 58.160 41.667 0.00 0.00 0.00 2.39
212 3363 5.361571 TCCGTCTCAGTTTATAAGGCATACA 59.638 40.000 0.00 0.00 0.00 2.29
213 3364 5.462398 CCGTCTCAGTTTATAAGGCATACAC 59.538 44.000 0.00 0.00 0.00 2.90
214 3365 5.173312 CGTCTCAGTTTATAAGGCATACACG 59.827 44.000 0.00 0.00 0.00 4.49
215 3366 6.040878 GTCTCAGTTTATAAGGCATACACGT 58.959 40.000 0.00 0.00 0.00 4.49
216 3367 7.198390 GTCTCAGTTTATAAGGCATACACGTA 58.802 38.462 0.00 0.00 0.00 3.57
217 3368 7.167136 GTCTCAGTTTATAAGGCATACACGTAC 59.833 40.741 0.00 0.00 0.00 3.67
218 3369 7.067859 TCTCAGTTTATAAGGCATACACGTACT 59.932 37.037 0.00 0.00 0.00 2.73
219 3370 7.549839 TCAGTTTATAAGGCATACACGTACTT 58.450 34.615 0.00 0.00 0.00 2.24
220 3371 7.703621 TCAGTTTATAAGGCATACACGTACTTC 59.296 37.037 0.00 0.00 0.00 3.01
221 3372 7.705325 CAGTTTATAAGGCATACACGTACTTCT 59.295 37.037 0.00 0.00 0.00 2.85
222 3373 8.906867 AGTTTATAAGGCATACACGTACTTCTA 58.093 33.333 0.00 0.00 0.00 2.10
223 3374 9.178427 GTTTATAAGGCATACACGTACTTCTAG 57.822 37.037 0.00 0.00 0.00 2.43
224 3375 4.650754 AAGGCATACACGTACTTCTAGG 57.349 45.455 0.00 0.00 0.00 3.02
225 3376 3.629087 AGGCATACACGTACTTCTAGGT 58.371 45.455 0.00 0.00 0.00 3.08
226 3377 3.631227 AGGCATACACGTACTTCTAGGTC 59.369 47.826 0.00 0.00 0.00 3.85
227 3378 3.547613 GGCATACACGTACTTCTAGGTCG 60.548 52.174 0.00 0.00 0.00 4.79
228 3379 3.615614 CATACACGTACTTCTAGGTCGC 58.384 50.000 0.00 0.00 0.00 5.19
229 3380 0.807496 ACACGTACTTCTAGGTCGCC 59.193 55.000 0.00 0.00 0.00 5.54
230 3381 0.806868 CACGTACTTCTAGGTCGCCA 59.193 55.000 0.00 0.00 0.00 5.69
231 3382 1.200716 CACGTACTTCTAGGTCGCCAA 59.799 52.381 0.00 0.00 0.00 4.52
232 3383 2.097825 ACGTACTTCTAGGTCGCCAAT 58.902 47.619 0.00 0.00 0.00 3.16
233 3384 2.494870 ACGTACTTCTAGGTCGCCAATT 59.505 45.455 0.00 0.00 0.00 2.32
234 3385 3.056322 ACGTACTTCTAGGTCGCCAATTT 60.056 43.478 0.00 0.00 0.00 1.82
235 3386 4.158394 ACGTACTTCTAGGTCGCCAATTTA 59.842 41.667 0.00 0.00 0.00 1.40
236 3387 4.738740 CGTACTTCTAGGTCGCCAATTTAG 59.261 45.833 0.00 0.00 0.00 1.85
237 3388 4.138487 ACTTCTAGGTCGCCAATTTAGG 57.862 45.455 0.00 0.00 0.00 2.69
252 3403 6.935167 CCAATTTAGGCAAGGAAATACAACT 58.065 36.000 0.00 0.00 0.00 3.16
253 3404 7.386059 CCAATTTAGGCAAGGAAATACAACTT 58.614 34.615 0.00 0.00 0.00 2.66
254 3405 8.527810 CCAATTTAGGCAAGGAAATACAACTTA 58.472 33.333 0.00 0.00 0.00 2.24
297 3448 9.088987 ACCATTAGAAAATACAACATCCAAAGT 57.911 29.630 0.00 0.00 0.00 2.66
298 3449 9.927668 CCATTAGAAAATACAACATCCAAAGTT 57.072 29.630 0.00 0.00 0.00 2.66
345 3496 8.911918 ATATATAAGTTGTATTTCGTTGGCCA 57.088 30.769 0.00 0.00 0.00 5.36
346 3497 5.968528 ATAAGTTGTATTTCGTTGGCCAA 57.031 34.783 16.05 16.05 0.00 4.52
347 3498 4.657436 AAGTTGTATTTCGTTGGCCAAA 57.343 36.364 22.47 4.55 0.00 3.28
348 3499 3.972403 AGTTGTATTTCGTTGGCCAAAC 58.028 40.909 22.47 14.36 35.25 2.93
349 3500 3.634910 AGTTGTATTTCGTTGGCCAAACT 59.365 39.130 22.47 13.80 36.56 2.66
350 3501 3.634568 TGTATTTCGTTGGCCAAACTG 57.365 42.857 22.47 13.50 36.56 3.16
351 3502 2.952978 TGTATTTCGTTGGCCAAACTGT 59.047 40.909 22.47 8.27 36.56 3.55
352 3503 2.793278 ATTTCGTTGGCCAAACTGTC 57.207 45.000 22.47 6.33 36.56 3.51
353 3504 0.378962 TTTCGTTGGCCAAACTGTCG 59.621 50.000 22.47 19.15 36.56 4.35
354 3505 0.462225 TTCGTTGGCCAAACTGTCGA 60.462 50.000 22.47 21.26 36.56 4.20
355 3506 0.250124 TCGTTGGCCAAACTGTCGAT 60.250 50.000 22.47 0.00 36.56 3.59
356 3507 0.165944 CGTTGGCCAAACTGTCGATC 59.834 55.000 22.47 3.02 36.56 3.69
357 3508 1.523758 GTTGGCCAAACTGTCGATCT 58.476 50.000 22.47 0.00 35.75 2.75
358 3509 2.695359 GTTGGCCAAACTGTCGATCTA 58.305 47.619 22.47 0.00 35.75 1.98
359 3510 2.672961 TGGCCAAACTGTCGATCTAG 57.327 50.000 0.61 0.00 0.00 2.43
360 3511 1.207089 TGGCCAAACTGTCGATCTAGG 59.793 52.381 0.61 0.00 0.00 3.02
361 3512 1.473434 GGCCAAACTGTCGATCTAGGG 60.473 57.143 0.00 0.00 0.00 3.53
362 3513 1.480954 GCCAAACTGTCGATCTAGGGA 59.519 52.381 0.00 0.00 0.00 4.20
363 3514 2.103263 GCCAAACTGTCGATCTAGGGAT 59.897 50.000 0.00 0.00 34.45 3.85
364 3515 3.321111 GCCAAACTGTCGATCTAGGGATA 59.679 47.826 0.00 0.00 31.46 2.59
365 3516 4.796618 GCCAAACTGTCGATCTAGGGATAC 60.797 50.000 0.00 0.00 31.46 2.24
366 3517 4.537965 CAAACTGTCGATCTAGGGATACG 58.462 47.826 0.00 0.00 37.60 3.06
367 3518 2.152830 ACTGTCGATCTAGGGATACGC 58.847 52.381 0.00 0.00 37.60 4.42
368 3519 1.128878 CTGTCGATCTAGGGATACGCG 59.871 57.143 3.53 3.53 37.60 6.01
369 3520 1.155042 GTCGATCTAGGGATACGCGT 58.845 55.000 19.17 19.17 37.60 6.01
370 3521 2.289010 TGTCGATCTAGGGATACGCGTA 60.289 50.000 22.94 22.94 37.60 4.42
371 3522 2.935201 GTCGATCTAGGGATACGCGTAT 59.065 50.000 30.63 30.63 37.60 3.06
372 3523 2.934553 TCGATCTAGGGATACGCGTATG 59.065 50.000 34.66 20.00 37.60 2.39
373 3524 2.934553 CGATCTAGGGATACGCGTATGA 59.065 50.000 34.66 24.23 37.60 2.15
374 3525 3.242349 CGATCTAGGGATACGCGTATGAC 60.242 52.174 34.66 25.03 37.60 3.06
375 3526 3.413846 TCTAGGGATACGCGTATGACT 57.586 47.619 34.66 29.44 37.60 3.41
376 3527 3.748083 TCTAGGGATACGCGTATGACTT 58.252 45.455 34.66 23.79 37.60 3.01
377 3528 4.898320 TCTAGGGATACGCGTATGACTTA 58.102 43.478 34.66 23.65 37.60 2.24
378 3529 5.494724 TCTAGGGATACGCGTATGACTTAT 58.505 41.667 34.66 12.60 37.60 1.73
379 3530 6.643388 TCTAGGGATACGCGTATGACTTATA 58.357 40.000 34.66 16.93 37.60 0.98
380 3531 7.105588 TCTAGGGATACGCGTATGACTTATAA 58.894 38.462 34.66 15.56 37.60 0.98
381 3532 6.579666 AGGGATACGCGTATGACTTATAAA 57.420 37.500 34.66 4.20 37.60 1.40
382 3533 6.385033 AGGGATACGCGTATGACTTATAAAC 58.615 40.000 34.66 16.16 37.60 2.01
383 3534 6.208204 AGGGATACGCGTATGACTTATAAACT 59.792 38.462 34.66 14.57 37.60 2.66
384 3535 6.307318 GGGATACGCGTATGACTTATAAACTG 59.693 42.308 34.66 0.00 37.60 3.16
385 3536 7.080099 GGATACGCGTATGACTTATAAACTGA 58.920 38.462 34.66 2.26 0.00 3.41
386 3537 7.270793 GGATACGCGTATGACTTATAAACTGAG 59.729 40.741 34.66 0.00 0.00 3.35
387 3538 6.127810 ACGCGTATGACTTATAAACTGAGA 57.872 37.500 11.67 0.00 0.00 3.27
388 3539 5.970023 ACGCGTATGACTTATAAACTGAGAC 59.030 40.000 11.67 0.00 0.00 3.36
389 3540 5.113678 CGCGTATGACTTATAAACTGAGACG 59.886 44.000 0.00 0.00 0.00 4.18
390 3541 5.398711 GCGTATGACTTATAAACTGAGACGG 59.601 44.000 0.00 0.00 0.00 4.79
391 3542 6.722301 CGTATGACTTATAAACTGAGACGGA 58.278 40.000 0.00 0.00 0.00 4.69
392 3543 6.851837 CGTATGACTTATAAACTGAGACGGAG 59.148 42.308 0.00 0.00 0.00 4.63
393 3544 5.578005 TGACTTATAAACTGAGACGGAGG 57.422 43.478 0.00 0.00 0.00 4.30
394 3545 4.401519 TGACTTATAAACTGAGACGGAGGG 59.598 45.833 0.00 0.00 0.00 4.30
395 3546 4.607239 ACTTATAAACTGAGACGGAGGGA 58.393 43.478 0.00 0.00 0.00 4.20
396 3547 4.645588 ACTTATAAACTGAGACGGAGGGAG 59.354 45.833 0.00 0.00 0.00 4.30
397 3548 2.599408 TAAACTGAGACGGAGGGAGT 57.401 50.000 0.00 0.00 0.00 3.85
398 3549 2.599408 AAACTGAGACGGAGGGAGTA 57.401 50.000 0.00 0.00 0.00 2.59
399 3550 1.836802 AACTGAGACGGAGGGAGTAC 58.163 55.000 0.00 0.00 0.00 2.73
517 3706 5.689383 AGTTACTACATGTGCAAAACCAG 57.311 39.130 9.11 0.00 0.00 4.00
527 3716 1.176527 GCAAAACCAGCTCTATGGCA 58.823 50.000 0.00 0.00 44.80 4.92
528 3717 1.545582 GCAAAACCAGCTCTATGGCAA 59.454 47.619 0.00 0.00 44.80 4.52
529 3718 2.672195 GCAAAACCAGCTCTATGGCAAC 60.672 50.000 0.00 0.00 44.80 4.17
532 3721 3.550437 AACCAGCTCTATGGCAACTAG 57.450 47.619 0.00 0.00 44.80 2.57
550 3739 7.537649 GGCAACTAGTACAAAATTGCTTTCTAC 59.462 37.037 17.89 3.58 44.03 2.59
568 3757 4.224433 TCTACGAAGCAGTAACTTCAACG 58.776 43.478 5.25 0.00 45.22 4.10
574 3763 5.597813 AAGCAGTAACTTCAACGATTCTG 57.402 39.130 0.00 0.00 0.00 3.02
578 3767 5.612709 GCAGTAACTTCAACGATTCTGACAC 60.613 44.000 0.00 0.00 0.00 3.67
602 3791 8.928733 CACTTTTTAGCCTACGAACAATAGTTA 58.071 33.333 0.00 0.00 38.30 2.24
604 3793 9.916397 CTTTTTAGCCTACGAACAATAGTTATG 57.084 33.333 0.00 0.00 38.30 1.90
606 3795 5.018539 AGCCTACGAACAATAGTTATGCA 57.981 39.130 0.00 0.00 38.30 3.96
619 3808 7.231317 ACAATAGTTATGCAGTATTTCCATGGG 59.769 37.037 13.02 0.00 29.59 4.00
640 3833 6.403878 TGGGTGCTATTTCTAAGACAACTAC 58.596 40.000 0.00 0.00 0.00 2.73
667 3860 0.713883 ACTCGCAAGTCGCAATAACG 59.286 50.000 0.00 0.00 42.60 3.18
675 3868 4.381566 GCAAGTCGCAATAACGTTTGAATT 59.618 37.500 5.91 0.00 41.79 2.17
680 3888 7.302524 AGTCGCAATAACGTTTGAATTTACAT 58.697 30.769 5.91 0.00 0.00 2.29
735 3943 3.837731 TGCGGGGTCATCATTCATATCTA 59.162 43.478 0.00 0.00 0.00 1.98
740 3948 7.417911 GCGGGGTCATCATTCATATCTAATCTA 60.418 40.741 0.00 0.00 0.00 1.98
743 3951 9.270640 GGGTCATCATTCATATCTAATCTATGC 57.729 37.037 0.00 0.00 0.00 3.14
785 3995 0.033228 CTCGCAATGGCCAAAACCAA 59.967 50.000 10.96 0.00 44.65 3.67
786 3996 0.683973 TCGCAATGGCCAAAACCAAT 59.316 45.000 10.96 0.00 44.65 3.16
795 4005 2.352323 GGCCAAAACCAATACTTCCACG 60.352 50.000 0.00 0.00 0.00 4.94
958 4294 2.679349 GCCTTCACCTTCATCTCAGTCC 60.679 54.545 0.00 0.00 0.00 3.85
985 4321 3.963428 ACTTCAGAGTTTCATACCGCT 57.037 42.857 0.00 0.00 29.87 5.52
992 4330 4.091509 CAGAGTTTCATACCGCTAACACAC 59.908 45.833 0.00 0.00 0.00 3.82
1007 4345 1.153289 ACACAGAGATCATGGCGGC 60.153 57.895 0.00 0.00 0.00 6.53
1104 4442 0.105039 GATGGAACTACGCCCTCAGG 59.895 60.000 0.00 0.00 0.00 3.86
1290 4702 5.896073 ATTAGAAGCTGCCTACTTGGTAT 57.104 39.130 0.00 0.00 38.35 2.73
1291 4703 5.693769 TTAGAAGCTGCCTACTTGGTATT 57.306 39.130 0.00 0.00 38.35 1.89
1292 4704 4.576330 AGAAGCTGCCTACTTGGTATTT 57.424 40.909 0.00 0.00 38.35 1.40
1293 4705 4.518249 AGAAGCTGCCTACTTGGTATTTC 58.482 43.478 0.00 0.00 38.35 2.17
1294 4706 3.283259 AGCTGCCTACTTGGTATTTCC 57.717 47.619 0.00 0.00 38.35 3.13
1295 4707 2.846827 AGCTGCCTACTTGGTATTTCCT 59.153 45.455 0.00 0.00 38.35 3.36
1296 4708 3.118223 AGCTGCCTACTTGGTATTTCCTC 60.118 47.826 0.00 0.00 38.35 3.71
1297 4709 3.809905 CTGCCTACTTGGTATTTCCTCC 58.190 50.000 0.00 0.00 38.35 4.30
1298 4710 2.169769 TGCCTACTTGGTATTTCCTCCG 59.830 50.000 0.00 0.00 38.35 4.63
1299 4711 2.169978 GCCTACTTGGTATTTCCTCCGT 59.830 50.000 0.00 0.00 38.35 4.69
1300 4712 3.370209 GCCTACTTGGTATTTCCTCCGTT 60.370 47.826 0.00 0.00 38.35 4.44
1301 4713 4.840271 CCTACTTGGTATTTCCTCCGTTT 58.160 43.478 0.00 0.00 37.07 3.60
1302 4714 4.634443 CCTACTTGGTATTTCCTCCGTTTG 59.366 45.833 0.00 0.00 37.07 2.93
1303 4715 3.418047 ACTTGGTATTTCCTCCGTTTGG 58.582 45.455 0.00 0.00 37.07 3.28
1304 4716 3.073356 ACTTGGTATTTCCTCCGTTTGGA 59.927 43.478 0.00 0.00 43.88 3.53
1305 4717 3.791953 TGGTATTTCCTCCGTTTGGAA 57.208 42.857 0.00 0.00 45.87 3.53
1306 4718 4.310022 TGGTATTTCCTCCGTTTGGAAT 57.690 40.909 0.00 0.00 45.87 3.01
1307 4719 4.668636 TGGTATTTCCTCCGTTTGGAATT 58.331 39.130 0.00 0.00 45.87 2.17
1308 4720 5.817784 TGGTATTTCCTCCGTTTGGAATTA 58.182 37.500 0.00 0.00 45.87 1.40
1309 4721 5.648960 TGGTATTTCCTCCGTTTGGAATTAC 59.351 40.000 16.45 16.45 45.87 1.89
1310 4722 6.127810 GTATTTCCTCCGTTTGGAATTACC 57.872 41.667 15.11 0.00 45.87 2.85
1311 4723 4.376225 TTTCCTCCGTTTGGAATTACCT 57.624 40.909 0.00 0.00 45.87 3.08
1312 4724 3.343941 TCCTCCGTTTGGAATTACCTG 57.656 47.619 0.00 0.00 45.87 4.00
1313 4725 2.640826 TCCTCCGTTTGGAATTACCTGT 59.359 45.455 0.00 0.00 45.87 4.00
1314 4726 3.007635 CCTCCGTTTGGAATTACCTGTC 58.992 50.000 0.00 0.00 45.87 3.51
1315 4727 3.307480 CCTCCGTTTGGAATTACCTGTCT 60.307 47.826 0.00 0.00 45.87 3.41
1316 4728 3.933332 CTCCGTTTGGAATTACCTGTCTC 59.067 47.826 0.00 0.00 45.87 3.36
1317 4729 2.671396 CCGTTTGGAATTACCTGTCTCG 59.329 50.000 0.00 0.00 39.86 4.04
1318 4730 2.671396 CGTTTGGAATTACCTGTCTCGG 59.329 50.000 0.00 0.00 39.86 4.63
1319 4731 3.615592 CGTTTGGAATTACCTGTCTCGGA 60.616 47.826 0.00 0.00 39.86 4.55
1320 4732 4.320870 GTTTGGAATTACCTGTCTCGGAA 58.679 43.478 0.00 0.00 39.86 4.30
1321 4733 4.627284 TTGGAATTACCTGTCTCGGAAA 57.373 40.909 0.00 0.00 39.86 3.13
1322 4734 4.837093 TGGAATTACCTGTCTCGGAAAT 57.163 40.909 0.00 0.00 39.86 2.17
1323 4735 4.513442 TGGAATTACCTGTCTCGGAAATG 58.487 43.478 0.00 0.00 39.86 2.32
1324 4736 3.877508 GGAATTACCTGTCTCGGAAATGG 59.122 47.826 0.00 0.00 35.41 3.16
1325 4737 4.383770 GGAATTACCTGTCTCGGAAATGGA 60.384 45.833 0.00 0.00 35.41 3.41
1326 4738 3.604875 TTACCTGTCTCGGAAATGGAC 57.395 47.619 0.00 0.00 0.00 4.02
1327 4739 0.246635 ACCTGTCTCGGAAATGGACG 59.753 55.000 0.00 0.00 33.21 4.79
1328 4740 0.246635 CCTGTCTCGGAAATGGACGT 59.753 55.000 0.00 0.00 33.21 4.34
1329 4741 1.475280 CCTGTCTCGGAAATGGACGTA 59.525 52.381 0.00 0.00 33.21 3.57
1330 4742 2.100916 CCTGTCTCGGAAATGGACGTAT 59.899 50.000 0.00 0.00 33.21 3.06
1331 4743 3.430374 CCTGTCTCGGAAATGGACGTATT 60.430 47.826 0.00 0.00 33.21 1.89
1332 4744 4.181578 CTGTCTCGGAAATGGACGTATTT 58.818 43.478 0.00 0.00 33.19 1.40
1333 4745 5.327616 TGTCTCGGAAATGGACGTATTTA 57.672 39.130 0.00 0.00 30.78 1.40
1334 4746 5.345702 TGTCTCGGAAATGGACGTATTTAG 58.654 41.667 0.00 0.00 30.78 1.85
1335 4747 5.125900 TGTCTCGGAAATGGACGTATTTAGA 59.874 40.000 0.00 0.00 30.78 2.10
1336 4748 6.038356 GTCTCGGAAATGGACGTATTTAGAA 58.962 40.000 0.00 0.00 30.78 2.10
1337 4749 6.020041 GTCTCGGAAATGGACGTATTTAGAAC 60.020 42.308 0.00 0.00 30.78 3.01
1338 4750 5.969423 TCGGAAATGGACGTATTTAGAACT 58.031 37.500 0.00 0.00 30.78 3.01
1339 4751 7.067372 TCTCGGAAATGGACGTATTTAGAACTA 59.933 37.037 0.00 0.00 30.78 2.24
1340 4752 7.546358 TCGGAAATGGACGTATTTAGAACTAA 58.454 34.615 0.00 0.00 30.78 2.24
1341 4753 8.034215 TCGGAAATGGACGTATTTAGAACTAAA 58.966 33.333 9.03 9.03 39.12 1.85
1342 4754 8.658609 CGGAAATGGACGTATTTAGAACTAAAA 58.341 33.333 10.38 0.10 38.38 1.52
1370 4782 9.938670 ACATCTAGATATATCTATTTTCGCGAC 57.061 33.333 20.31 0.00 38.60 5.19
1371 4783 9.937175 CATCTAGATATATCTATTTTCGCGACA 57.063 33.333 20.31 0.00 38.60 4.35
1381 4793 6.415702 TCTATTTTCGCGACAATTAATTCCG 58.584 36.000 23.96 12.62 0.00 4.30
1382 4794 4.665281 TTTTCGCGACAATTAATTCCGA 57.335 36.364 9.15 12.17 0.00 4.55
1383 4795 4.665281 TTTCGCGACAATTAATTCCGAA 57.335 36.364 9.15 15.94 0.00 4.30
1384 4796 3.644805 TCGCGACAATTAATTCCGAAC 57.355 42.857 3.71 5.77 0.00 3.95
1385 4797 2.028284 TCGCGACAATTAATTCCGAACG 59.972 45.455 3.71 14.08 0.00 3.95
1386 4798 2.700694 GCGACAATTAATTCCGAACGG 58.299 47.619 18.36 6.94 0.00 4.44
1387 4799 2.349275 GCGACAATTAATTCCGAACGGA 59.651 45.455 18.36 12.04 43.52 4.69
1388 4800 3.543460 GCGACAATTAATTCCGAACGGAG 60.543 47.826 15.34 5.60 46.06 4.63
1389 4801 3.000925 CGACAATTAATTCCGAACGGAGG 59.999 47.826 15.34 4.52 46.06 4.30
1390 4802 3.275999 ACAATTAATTCCGAACGGAGGG 58.724 45.455 15.34 5.11 46.06 4.30
1414 4836 0.101399 CTAGCTAGGCGTGTCTGTGG 59.899 60.000 13.32 0.00 0.00 4.17
1417 4839 0.245539 GCTAGGCGTGTCTGTGGTTA 59.754 55.000 0.00 0.00 0.00 2.85
1460 7871 5.041940 CGATGTAGAAACTTGGTACTAGCC 58.958 45.833 0.00 0.00 0.00 3.93
1467 7878 0.527817 CTTGGTACTAGCCGGCTTCG 60.528 60.000 37.74 27.36 0.00 3.79
1468 7879 0.966875 TTGGTACTAGCCGGCTTCGA 60.967 55.000 37.74 16.88 35.61 3.71
1509 7920 6.704289 AAAAACCACGATGATGATGATGAT 57.296 33.333 0.00 0.00 0.00 2.45
1510 7921 5.684550 AAACCACGATGATGATGATGATG 57.315 39.130 0.00 0.00 0.00 3.07
1511 7922 4.612264 ACCACGATGATGATGATGATGA 57.388 40.909 0.00 0.00 0.00 2.92
1512 7923 5.161943 ACCACGATGATGATGATGATGAT 57.838 39.130 0.00 0.00 0.00 2.45
1554 7965 5.871396 TCATATTACTCCCCTTGTCTGTC 57.129 43.478 0.00 0.00 0.00 3.51
1590 8001 3.387699 TCTCGGTGAGGAATATGCATTGA 59.612 43.478 3.54 0.00 0.00 2.57
1608 8020 5.767909 CATTGATGCTTGAATTTCGTTTCG 58.232 37.500 0.00 0.00 0.00 3.46
1609 8021 3.820689 TGATGCTTGAATTTCGTTTCGG 58.179 40.909 0.00 0.00 0.00 4.30
1653 8065 0.392060 AACCCGGCCTTTGATCGTAC 60.392 55.000 0.00 0.00 0.00 3.67
1702 8114 5.876357 TGTTCCTACTTCCTAGCAAACATT 58.124 37.500 0.00 0.00 28.80 2.71
1727 8139 1.220529 TTTCTTCAGTCTGCAGCACG 58.779 50.000 9.47 0.00 0.00 5.34
1746 8158 3.494309 CGCATGAATGTGTCATCTACG 57.506 47.619 0.00 0.00 44.01 3.51
1765 8177 1.742411 CGGGTGTTGAAGTGACACACT 60.742 52.381 8.59 2.37 46.61 3.55
1784 8196 7.182060 ACACACTTGGTAAATTCCCATATCTT 58.818 34.615 0.00 0.00 0.00 2.40
1785 8197 7.339466 ACACACTTGGTAAATTCCCATATCTTC 59.661 37.037 0.00 0.00 0.00 2.87
1787 8199 7.557719 ACACTTGGTAAATTCCCATATCTTCAG 59.442 37.037 0.00 0.00 0.00 3.02
1788 8200 7.557719 CACTTGGTAAATTCCCATATCTTCAGT 59.442 37.037 0.00 0.00 0.00 3.41
1789 8201 8.778059 ACTTGGTAAATTCCCATATCTTCAGTA 58.222 33.333 0.00 0.00 0.00 2.74
1790 8202 8.974060 TTGGTAAATTCCCATATCTTCAGTAC 57.026 34.615 0.00 0.00 0.00 2.73
1816 8228 5.769484 AGATGTCATCAAGCAATCCATTC 57.231 39.130 15.20 0.00 0.00 2.67
1823 8235 5.477637 TCATCAAGCAATCCATTCAGTTTCA 59.522 36.000 0.00 0.00 0.00 2.69
1830 8242 5.333568 GCAATCCATTCAGTTTCAGTTTTGC 60.334 40.000 0.00 0.00 0.00 3.68
1833 8245 3.976942 CCATTCAGTTTCAGTTTTGCTCG 59.023 43.478 0.00 0.00 0.00 5.03
1838 8250 3.786048 CAGTTTCAGTTTTGCTCGTTGAC 59.214 43.478 0.00 0.00 0.00 3.18
1877 8289 6.489127 TGGTTCGTCCACATTAAATAGTTG 57.511 37.500 0.00 0.00 41.93 3.16
1909 16580 3.771216 ACCATCTGCAGGTTTTCTGATT 58.229 40.909 15.13 0.00 46.18 2.57
1982 16657 2.644798 AGTTTCCTAGGGTCATGCAAGT 59.355 45.455 9.46 0.00 0.00 3.16
2047 16723 7.148355 TCGAGTACCACAAGTTTTTCTTTTT 57.852 32.000 0.00 0.00 33.63 1.94
2070 16746 1.410224 CCAGGCTAACCCCTTTCCATC 60.410 57.143 0.00 0.00 36.11 3.51
2089 16765 8.479313 TTCCATCAATAGCATGACGATAATAC 57.521 34.615 0.00 0.00 30.82 1.89
2092 16768 8.385858 CCATCAATAGCATGACGATAATACAAG 58.614 37.037 0.00 0.00 30.82 3.16
2103 16779 8.221965 TGACGATAATACAAGAGTGTCAGTAT 57.778 34.615 0.00 0.00 39.30 2.12
2109 16785 4.815533 ACAAGAGTGTCAGTATCAGCAT 57.184 40.909 0.00 0.00 29.49 3.79
2119 16795 7.939588 AGTGTCAGTATCAGCATAGTATCAGTA 59.060 37.037 0.00 0.00 0.00 2.74
2124 16800 4.830826 TCAGCATAGTATCAGTACCACG 57.169 45.455 0.00 0.00 0.00 4.94
2137 16813 4.039973 TCAGTACCACGAGTTTCTTGGAAT 59.960 41.667 8.40 0.00 37.96 3.01
2140 16816 6.090898 CAGTACCACGAGTTTCTTGGAATTAG 59.909 42.308 8.40 0.00 37.96 1.73
2150 16826 8.103948 AGTTTCTTGGAATTAGTCAAGATGTG 57.896 34.615 14.88 0.00 45.69 3.21
2182 16858 8.593492 TCATTAATAATCAAGATGTGACTCCG 57.407 34.615 0.00 0.00 39.72 4.63
2183 16859 7.657354 TCATTAATAATCAAGATGTGACTCCGG 59.343 37.037 0.00 0.00 39.72 5.14
2184 16860 5.359194 AATAATCAAGATGTGACTCCGGT 57.641 39.130 0.00 0.00 39.72 5.28
2185 16861 2.680312 ATCAAGATGTGACTCCGGTG 57.320 50.000 0.00 0.00 39.72 4.94
2186 16862 1.338107 TCAAGATGTGACTCCGGTGT 58.662 50.000 9.33 9.33 0.00 4.16
2187 16863 1.272490 TCAAGATGTGACTCCGGTGTC 59.728 52.381 26.08 26.08 37.47 3.67
2188 16864 1.273606 CAAGATGTGACTCCGGTGTCT 59.726 52.381 30.67 15.72 37.79 3.41
2189 16865 1.633774 AGATGTGACTCCGGTGTCTT 58.366 50.000 30.67 18.67 37.79 3.01
2190 16866 1.546476 AGATGTGACTCCGGTGTCTTC 59.454 52.381 30.67 23.96 37.79 2.87
2191 16867 1.546476 GATGTGACTCCGGTGTCTTCT 59.454 52.381 30.67 17.93 37.79 2.85
2192 16868 0.959553 TGTGACTCCGGTGTCTTCTC 59.040 55.000 30.67 20.03 37.79 2.87
2193 16869 0.244178 GTGACTCCGGTGTCTTCTCC 59.756 60.000 30.67 13.91 37.79 3.71
2194 16870 0.178973 TGACTCCGGTGTCTTCTCCA 60.179 55.000 30.67 12.67 37.79 3.86
2195 16871 1.187087 GACTCCGGTGTCTTCTCCAT 58.813 55.000 25.66 0.00 34.39 3.41
2196 16872 1.135333 GACTCCGGTGTCTTCTCCATC 59.865 57.143 25.66 0.34 34.39 3.51
2197 16873 1.186200 CTCCGGTGTCTTCTCCATCA 58.814 55.000 0.00 0.00 0.00 3.07
2198 16874 1.135915 CTCCGGTGTCTTCTCCATCAG 59.864 57.143 0.00 0.00 0.00 2.90
2199 16875 1.186200 CCGGTGTCTTCTCCATCAGA 58.814 55.000 0.00 0.00 0.00 3.27
2200 16876 1.134965 CCGGTGTCTTCTCCATCAGAC 60.135 57.143 0.00 0.00 40.03 3.51
2201 16877 1.468224 CGGTGTCTTCTCCATCAGACG 60.468 57.143 0.00 0.00 42.16 4.18
2202 16878 1.546476 GGTGTCTTCTCCATCAGACGT 59.454 52.381 0.00 0.00 42.16 4.34
2203 16879 2.028930 GGTGTCTTCTCCATCAGACGTT 60.029 50.000 0.00 0.00 42.16 3.99
2204 16880 2.989840 GTGTCTTCTCCATCAGACGTTG 59.010 50.000 0.00 0.00 42.16 4.10
2205 16881 2.890945 TGTCTTCTCCATCAGACGTTGA 59.109 45.455 0.00 0.00 42.16 3.18
2206 16882 3.246619 GTCTTCTCCATCAGACGTTGAC 58.753 50.000 0.00 0.00 38.99 3.18
2207 16883 2.890945 TCTTCTCCATCAGACGTTGACA 59.109 45.455 0.00 0.00 38.99 3.58
2208 16884 3.057245 TCTTCTCCATCAGACGTTGACAG 60.057 47.826 0.00 0.00 38.99 3.51
2209 16885 1.067565 TCTCCATCAGACGTTGACAGC 60.068 52.381 0.00 0.00 38.99 4.40
2210 16886 0.678950 TCCATCAGACGTTGACAGCA 59.321 50.000 0.00 0.00 38.99 4.41
2211 16887 1.069978 TCCATCAGACGTTGACAGCAA 59.930 47.619 0.00 0.00 38.99 3.91
2212 16888 1.462283 CCATCAGACGTTGACAGCAAG 59.538 52.381 0.00 0.00 38.99 4.01
2213 16889 1.136141 CATCAGACGTTGACAGCAAGC 60.136 52.381 0.00 0.00 38.99 4.01
2214 16890 0.104855 TCAGACGTTGACAGCAAGCT 59.895 50.000 0.00 0.00 34.01 3.74
2215 16891 0.510359 CAGACGTTGACAGCAAGCTC 59.490 55.000 0.00 0.00 34.01 4.09
2216 16892 0.104855 AGACGTTGACAGCAAGCTCA 59.895 50.000 0.00 0.00 34.01 4.26
2217 16893 0.233332 GACGTTGACAGCAAGCTCAC 59.767 55.000 0.00 0.00 34.01 3.51
2218 16894 0.461870 ACGTTGACAGCAAGCTCACA 60.462 50.000 0.00 0.00 34.01 3.58
2219 16895 0.041839 CGTTGACAGCAAGCTCACAC 60.042 55.000 0.00 0.00 34.01 3.82
2220 16896 1.016627 GTTGACAGCAAGCTCACACA 58.983 50.000 0.00 0.00 34.01 3.72
2221 16897 1.003116 GTTGACAGCAAGCTCACACAG 60.003 52.381 0.00 0.00 34.01 3.66
2229 16905 3.958860 GCTCACACAGCCCCTGGT 61.959 66.667 0.00 0.00 43.17 4.00
2230 16906 2.592993 GCTCACACAGCCCCTGGTA 61.593 63.158 0.00 0.00 43.17 3.25
2231 16907 1.915078 GCTCACACAGCCCCTGGTAT 61.915 60.000 0.00 0.00 43.17 2.73
2232 16908 0.107508 CTCACACAGCCCCTGGTATG 60.108 60.000 0.00 0.00 35.51 2.39
2233 16909 1.077501 CACACAGCCCCTGGTATGG 60.078 63.158 0.00 0.00 35.51 2.74
2234 16910 1.541368 ACACAGCCCCTGGTATGGT 60.541 57.895 0.00 0.00 35.51 3.55
2235 16911 1.077501 CACAGCCCCTGGTATGGTG 60.078 63.158 0.00 0.00 35.51 4.17
2236 16912 2.308722 ACAGCCCCTGGTATGGTGG 61.309 63.158 10.64 0.00 35.51 4.61
2237 16913 2.000701 CAGCCCCTGGTATGGTGGA 61.001 63.158 0.00 0.00 0.00 4.02
2238 16914 2.001269 AGCCCCTGGTATGGTGGAC 61.001 63.158 0.00 0.00 0.00 4.02
2239 16915 2.305607 GCCCCTGGTATGGTGGACA 61.306 63.158 0.00 0.00 0.00 4.02
2240 16916 1.858739 GCCCCTGGTATGGTGGACAA 61.859 60.000 0.00 0.00 0.00 3.18
2241 16917 0.701731 CCCCTGGTATGGTGGACAAA 59.298 55.000 0.00 0.00 0.00 2.83
2242 16918 1.076350 CCCCTGGTATGGTGGACAAAA 59.924 52.381 0.00 0.00 0.00 2.44
2243 16919 2.167662 CCCTGGTATGGTGGACAAAAC 58.832 52.381 0.00 0.00 0.00 2.43
2261 16937 6.299141 ACAAAACCAAGAGTGTCAGTATCAT 58.701 36.000 0.00 0.00 0.00 2.45
2262 16938 6.772716 ACAAAACCAAGAGTGTCAGTATCATT 59.227 34.615 0.00 0.00 0.00 2.57
2264 16940 8.783093 CAAAACCAAGAGTGTCAGTATCATTAA 58.217 33.333 0.00 0.00 0.00 1.40
2265 16941 9.520515 AAAACCAAGAGTGTCAGTATCATTAAT 57.479 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 3182 5.534207 TTGTTGCTCTTCATTTCCATGTT 57.466 34.783 0.00 0.00 0.00 2.71
60 3211 5.987953 TCGCAAATTCATTCATTTTGACCAA 59.012 32.000 0.00 0.00 33.24 3.67
66 3217 6.482973 AGGTTGTTCGCAAATTCATTCATTTT 59.517 30.769 0.00 0.00 39.04 1.82
70 3221 4.582701 AGGTTGTTCGCAAATTCATTCA 57.417 36.364 0.00 0.00 39.04 2.57
75 3226 9.952341 GAAATATAAAAGGTTGTTCGCAAATTC 57.048 29.630 0.00 0.00 39.04 2.17
184 3335 3.958798 CCTTATAAACTGAGACGGAGGGA 59.041 47.826 0.00 0.00 0.00 4.20
185 3336 3.492829 GCCTTATAAACTGAGACGGAGGG 60.493 52.174 0.00 0.00 0.00 4.30
186 3337 3.132289 TGCCTTATAAACTGAGACGGAGG 59.868 47.826 0.00 0.00 0.00 4.30
187 3338 4.386867 TGCCTTATAAACTGAGACGGAG 57.613 45.455 0.00 0.00 0.00 4.63
188 3339 5.361571 TGTATGCCTTATAAACTGAGACGGA 59.638 40.000 0.00 0.00 0.00 4.69
189 3340 5.462398 GTGTATGCCTTATAAACTGAGACGG 59.538 44.000 0.00 0.00 0.00 4.79
190 3341 5.173312 CGTGTATGCCTTATAAACTGAGACG 59.827 44.000 0.00 0.00 28.77 4.18
191 3342 6.040878 ACGTGTATGCCTTATAAACTGAGAC 58.959 40.000 0.00 0.00 28.77 3.36
192 3343 6.216801 ACGTGTATGCCTTATAAACTGAGA 57.783 37.500 0.00 0.00 28.77 3.27
193 3344 7.201145 AGTACGTGTATGCCTTATAAACTGAG 58.799 38.462 0.00 0.00 28.77 3.35
194 3345 7.104043 AGTACGTGTATGCCTTATAAACTGA 57.896 36.000 0.00 0.00 28.77 3.41
195 3346 7.705325 AGAAGTACGTGTATGCCTTATAAACTG 59.295 37.037 0.00 0.00 28.77 3.16
196 3347 7.779073 AGAAGTACGTGTATGCCTTATAAACT 58.221 34.615 0.00 0.00 28.77 2.66
197 3348 7.998753 AGAAGTACGTGTATGCCTTATAAAC 57.001 36.000 0.00 0.00 0.00 2.01
198 3349 8.355169 CCTAGAAGTACGTGTATGCCTTATAAA 58.645 37.037 0.00 0.00 0.00 1.40
199 3350 7.503566 ACCTAGAAGTACGTGTATGCCTTATAA 59.496 37.037 0.00 0.00 0.00 0.98
200 3351 7.000472 ACCTAGAAGTACGTGTATGCCTTATA 59.000 38.462 0.00 0.00 0.00 0.98
201 3352 5.832060 ACCTAGAAGTACGTGTATGCCTTAT 59.168 40.000 0.00 0.00 0.00 1.73
202 3353 5.195940 ACCTAGAAGTACGTGTATGCCTTA 58.804 41.667 0.00 0.00 0.00 2.69
203 3354 4.021916 ACCTAGAAGTACGTGTATGCCTT 58.978 43.478 0.00 0.00 0.00 4.35
204 3355 3.629087 ACCTAGAAGTACGTGTATGCCT 58.371 45.455 0.00 0.00 0.00 4.75
205 3356 3.547613 CGACCTAGAAGTACGTGTATGCC 60.548 52.174 0.00 0.00 0.00 4.40
206 3357 3.615614 CGACCTAGAAGTACGTGTATGC 58.384 50.000 0.00 0.00 0.00 3.14
207 3358 3.547613 GGCGACCTAGAAGTACGTGTATG 60.548 52.174 0.00 0.00 0.00 2.39
208 3359 2.615912 GGCGACCTAGAAGTACGTGTAT 59.384 50.000 0.00 0.00 0.00 2.29
209 3360 2.009774 GGCGACCTAGAAGTACGTGTA 58.990 52.381 0.00 0.00 0.00 2.90
210 3361 0.807496 GGCGACCTAGAAGTACGTGT 59.193 55.000 0.00 0.00 0.00 4.49
211 3362 0.806868 TGGCGACCTAGAAGTACGTG 59.193 55.000 0.00 0.00 0.00 4.49
212 3363 1.538047 TTGGCGACCTAGAAGTACGT 58.462 50.000 0.00 0.00 0.00 3.57
213 3364 2.865343 ATTGGCGACCTAGAAGTACG 57.135 50.000 0.00 0.00 0.00 3.67
214 3365 5.048507 CCTAAATTGGCGACCTAGAAGTAC 58.951 45.833 0.00 0.00 0.00 2.73
215 3366 4.442472 GCCTAAATTGGCGACCTAGAAGTA 60.442 45.833 0.00 0.00 43.74 2.24
216 3367 3.681874 GCCTAAATTGGCGACCTAGAAGT 60.682 47.826 0.00 0.00 43.74 3.01
217 3368 2.872858 GCCTAAATTGGCGACCTAGAAG 59.127 50.000 0.00 0.00 43.74 2.85
218 3369 2.914059 GCCTAAATTGGCGACCTAGAA 58.086 47.619 0.00 0.00 43.74 2.10
219 3370 2.614829 GCCTAAATTGGCGACCTAGA 57.385 50.000 0.00 0.00 43.74 2.43
228 3379 6.935167 AGTTGTATTTCCTTGCCTAAATTGG 58.065 36.000 0.00 0.00 0.00 3.16
271 3422 9.088987 ACTTTGGATGTTGTATTTTCTAATGGT 57.911 29.630 0.00 0.00 0.00 3.55
272 3423 9.927668 AACTTTGGATGTTGTATTTTCTAATGG 57.072 29.630 0.00 0.00 0.00 3.16
319 3470 9.344772 TGGCCAACGAAATACAACTTATATATT 57.655 29.630 0.61 0.00 0.00 1.28
320 3471 8.911918 TGGCCAACGAAATACAACTTATATAT 57.088 30.769 0.61 0.00 0.00 0.86
321 3472 8.734218 TTGGCCAACGAAATACAACTTATATA 57.266 30.769 16.05 0.00 0.00 0.86
322 3473 7.633193 TTGGCCAACGAAATACAACTTATAT 57.367 32.000 16.05 0.00 0.00 0.86
323 3474 7.175293 AGTTTGGCCAACGAAATACAACTTATA 59.825 33.333 20.35 0.00 40.75 0.98
324 3475 5.968528 TTGGCCAACGAAATACAACTTAT 57.031 34.783 16.05 0.00 0.00 1.73
325 3476 5.299782 AGTTTGGCCAACGAAATACAACTTA 59.700 36.000 20.35 0.00 40.75 2.24
326 3477 4.098807 AGTTTGGCCAACGAAATACAACTT 59.901 37.500 20.35 0.00 40.75 2.66
327 3478 3.634910 AGTTTGGCCAACGAAATACAACT 59.365 39.130 20.35 12.84 40.75 3.16
328 3479 3.733727 CAGTTTGGCCAACGAAATACAAC 59.266 43.478 20.35 10.48 40.75 3.32
329 3480 3.381908 ACAGTTTGGCCAACGAAATACAA 59.618 39.130 20.35 0.00 40.75 2.41
330 3481 2.952978 ACAGTTTGGCCAACGAAATACA 59.047 40.909 20.35 0.00 40.75 2.29
331 3482 3.561503 GACAGTTTGGCCAACGAAATAC 58.438 45.455 20.35 12.90 40.75 1.89
332 3483 2.224549 CGACAGTTTGGCCAACGAAATA 59.775 45.455 20.35 0.00 40.75 1.40
333 3484 1.001815 CGACAGTTTGGCCAACGAAAT 60.002 47.619 20.35 0.00 40.75 2.17
334 3485 0.378962 CGACAGTTTGGCCAACGAAA 59.621 50.000 20.35 0.00 40.75 3.46
335 3486 0.462225 TCGACAGTTTGGCCAACGAA 60.462 50.000 20.35 0.00 40.75 3.85
336 3487 0.250124 ATCGACAGTTTGGCCAACGA 60.250 50.000 24.74 24.74 40.75 3.85
337 3488 0.165944 GATCGACAGTTTGGCCAACG 59.834 55.000 20.35 18.26 40.75 4.10
338 3489 1.523758 AGATCGACAGTTTGGCCAAC 58.476 50.000 20.35 13.66 35.32 3.77
339 3490 2.354704 CCTAGATCGACAGTTTGGCCAA 60.355 50.000 16.05 16.05 0.00 4.52
340 3491 1.207089 CCTAGATCGACAGTTTGGCCA 59.793 52.381 0.00 0.00 0.00 5.36
341 3492 1.473434 CCCTAGATCGACAGTTTGGCC 60.473 57.143 0.00 0.00 0.00 5.36
342 3493 1.480954 TCCCTAGATCGACAGTTTGGC 59.519 52.381 0.00 0.00 0.00 4.52
343 3494 4.556898 CGTATCCCTAGATCGACAGTTTGG 60.557 50.000 0.00 0.00 33.67 3.28
344 3495 4.537965 CGTATCCCTAGATCGACAGTTTG 58.462 47.826 0.00 0.00 33.67 2.93
345 3496 3.004524 GCGTATCCCTAGATCGACAGTTT 59.995 47.826 0.00 0.00 33.67 2.66
346 3497 2.553172 GCGTATCCCTAGATCGACAGTT 59.447 50.000 0.00 0.00 33.67 3.16
347 3498 2.152830 GCGTATCCCTAGATCGACAGT 58.847 52.381 0.00 0.00 33.67 3.55
348 3499 1.128878 CGCGTATCCCTAGATCGACAG 59.871 57.143 0.00 0.00 33.67 3.51
349 3500 1.154197 CGCGTATCCCTAGATCGACA 58.846 55.000 0.00 0.00 33.67 4.35
350 3501 1.155042 ACGCGTATCCCTAGATCGAC 58.845 55.000 11.67 0.00 33.67 4.20
351 3502 2.749280 TACGCGTATCCCTAGATCGA 57.251 50.000 16.41 0.00 33.67 3.59
352 3503 2.934553 TCATACGCGTATCCCTAGATCG 59.065 50.000 28.10 13.98 33.67 3.69
353 3504 3.940221 AGTCATACGCGTATCCCTAGATC 59.060 47.826 28.10 15.24 33.67 2.75
354 3505 3.952931 AGTCATACGCGTATCCCTAGAT 58.047 45.455 28.10 4.80 36.44 1.98
355 3506 3.413846 AGTCATACGCGTATCCCTAGA 57.586 47.619 28.10 18.74 0.00 2.43
356 3507 5.814764 ATAAGTCATACGCGTATCCCTAG 57.185 43.478 28.10 16.77 0.00 3.02
357 3508 7.391554 AGTTTATAAGTCATACGCGTATCCCTA 59.608 37.037 28.10 16.62 0.00 3.53
358 3509 6.208204 AGTTTATAAGTCATACGCGTATCCCT 59.792 38.462 28.10 21.89 0.00 4.20
359 3510 6.307318 CAGTTTATAAGTCATACGCGTATCCC 59.693 42.308 28.10 20.13 0.00 3.85
360 3511 7.080099 TCAGTTTATAAGTCATACGCGTATCC 58.920 38.462 28.10 20.47 0.00 2.59
361 3512 8.013947 TCTCAGTTTATAAGTCATACGCGTATC 58.986 37.037 28.10 18.04 0.00 2.24
362 3513 7.802251 GTCTCAGTTTATAAGTCATACGCGTAT 59.198 37.037 25.54 25.54 0.00 3.06
363 3514 7.128331 GTCTCAGTTTATAAGTCATACGCGTA 58.872 38.462 22.94 22.94 0.00 4.42
364 3515 5.970023 GTCTCAGTTTATAAGTCATACGCGT 59.030 40.000 19.17 19.17 0.00 6.01
365 3516 5.113678 CGTCTCAGTTTATAAGTCATACGCG 59.886 44.000 3.53 3.53 0.00 6.01
366 3517 5.398711 CCGTCTCAGTTTATAAGTCATACGC 59.601 44.000 0.00 0.00 0.00 4.42
367 3518 6.722301 TCCGTCTCAGTTTATAAGTCATACG 58.278 40.000 0.00 0.00 0.00 3.06
368 3519 7.140048 CCTCCGTCTCAGTTTATAAGTCATAC 58.860 42.308 0.00 0.00 0.00 2.39
369 3520 6.264744 CCCTCCGTCTCAGTTTATAAGTCATA 59.735 42.308 0.00 0.00 0.00 2.15
370 3521 5.069251 CCCTCCGTCTCAGTTTATAAGTCAT 59.931 44.000 0.00 0.00 0.00 3.06
371 3522 4.401519 CCCTCCGTCTCAGTTTATAAGTCA 59.598 45.833 0.00 0.00 0.00 3.41
372 3523 4.643784 TCCCTCCGTCTCAGTTTATAAGTC 59.356 45.833 0.00 0.00 0.00 3.01
373 3524 4.607239 TCCCTCCGTCTCAGTTTATAAGT 58.393 43.478 0.00 0.00 0.00 2.24
374 3525 4.645588 ACTCCCTCCGTCTCAGTTTATAAG 59.354 45.833 0.00 0.00 0.00 1.73
375 3526 4.607239 ACTCCCTCCGTCTCAGTTTATAA 58.393 43.478 0.00 0.00 0.00 0.98
376 3527 4.246712 ACTCCCTCCGTCTCAGTTTATA 57.753 45.455 0.00 0.00 0.00 0.98
377 3528 3.103080 ACTCCCTCCGTCTCAGTTTAT 57.897 47.619 0.00 0.00 0.00 1.40
378 3529 2.599408 ACTCCCTCCGTCTCAGTTTA 57.401 50.000 0.00 0.00 0.00 2.01
379 3530 2.169330 GTACTCCCTCCGTCTCAGTTT 58.831 52.381 0.00 0.00 0.00 2.66
380 3531 1.075050 TGTACTCCCTCCGTCTCAGTT 59.925 52.381 0.00 0.00 0.00 3.16
381 3532 0.697079 TGTACTCCCTCCGTCTCAGT 59.303 55.000 0.00 0.00 0.00 3.41
382 3533 1.678627 CATGTACTCCCTCCGTCTCAG 59.321 57.143 0.00 0.00 0.00 3.35
383 3534 1.283905 TCATGTACTCCCTCCGTCTCA 59.716 52.381 0.00 0.00 0.00 3.27
384 3535 2.054232 TCATGTACTCCCTCCGTCTC 57.946 55.000 0.00 0.00 0.00 3.36
385 3536 2.757894 ATCATGTACTCCCTCCGTCT 57.242 50.000 0.00 0.00 0.00 4.18
386 3537 3.492829 GGAAATCATGTACTCCCTCCGTC 60.493 52.174 0.00 0.00 0.00 4.79
387 3538 2.434702 GGAAATCATGTACTCCCTCCGT 59.565 50.000 0.00 0.00 0.00 4.69
388 3539 2.700897 AGGAAATCATGTACTCCCTCCG 59.299 50.000 0.00 0.00 0.00 4.63
389 3540 3.711704 TCAGGAAATCATGTACTCCCTCC 59.288 47.826 0.00 0.00 0.00 4.30
390 3541 5.359194 TTCAGGAAATCATGTACTCCCTC 57.641 43.478 0.00 0.00 0.00 4.30
391 3542 5.983333 ATTCAGGAAATCATGTACTCCCT 57.017 39.130 0.00 0.00 0.00 4.20
392 3543 8.697507 AAATATTCAGGAAATCATGTACTCCC 57.302 34.615 0.00 0.00 0.00 4.30
464 3653 9.243637 GTGCAAACACATTTTAGAAAAGACATA 57.756 29.630 0.00 0.00 46.61 2.29
483 3672 7.069569 CACATGTAGTAACTAAGTGTGCAAAC 58.930 38.462 0.00 0.00 31.74 2.93
517 3706 6.927294 ATTTTGTACTAGTTGCCATAGAGC 57.073 37.500 0.00 0.00 0.00 4.09
527 3716 8.597662 TCGTAGAAAGCAATTTTGTACTAGTT 57.402 30.769 0.00 0.00 41.15 2.24
528 3717 8.597662 TTCGTAGAAAGCAATTTTGTACTAGT 57.402 30.769 0.00 0.00 45.90 2.57
529 3718 7.688578 GCTTCGTAGAAAGCAATTTTGTACTAG 59.311 37.037 3.86 0.00 45.90 2.57
532 3721 6.140110 TGCTTCGTAGAAAGCAATTTTGTAC 58.860 36.000 8.74 0.00 43.55 2.90
550 3739 4.386049 AGAATCGTTGAAGTTACTGCTTCG 59.614 41.667 0.00 0.00 45.67 3.79
565 3754 5.063880 AGGCTAAAAAGTGTCAGAATCGTT 58.936 37.500 0.00 0.00 0.00 3.85
568 3757 5.867716 TCGTAGGCTAAAAAGTGTCAGAATC 59.132 40.000 0.00 0.00 0.00 2.52
574 3763 5.662211 TTGTTCGTAGGCTAAAAAGTGTC 57.338 39.130 0.00 0.00 0.00 3.67
578 3767 9.916397 CATAACTATTGTTCGTAGGCTAAAAAG 57.084 33.333 0.00 0.00 37.59 2.27
602 3791 2.034124 GCACCCATGGAAATACTGCAT 58.966 47.619 15.22 0.00 36.32 3.96
604 3793 1.767759 AGCACCCATGGAAATACTGC 58.232 50.000 15.22 9.54 0.00 4.40
606 3795 6.018433 AGAAATAGCACCCATGGAAATACT 57.982 37.500 15.22 5.66 0.00 2.12
640 3833 1.607713 CGACTTGCGAGTACTGACAG 58.392 55.000 6.58 0.00 44.57 3.51
709 3917 2.242926 TGAATGATGACCCCGCAAAAA 58.757 42.857 0.00 0.00 0.00 1.94
710 3918 1.916506 TGAATGATGACCCCGCAAAA 58.083 45.000 0.00 0.00 0.00 2.44
711 3919 2.142356 ATGAATGATGACCCCGCAAA 57.858 45.000 0.00 0.00 0.00 3.68
712 3920 3.072915 AGATATGAATGATGACCCCGCAA 59.927 43.478 0.00 0.00 0.00 4.85
713 3921 2.639347 AGATATGAATGATGACCCCGCA 59.361 45.455 0.00 0.00 0.00 5.69
714 3922 3.340814 AGATATGAATGATGACCCCGC 57.659 47.619 0.00 0.00 0.00 6.13
715 3923 6.882656 AGATTAGATATGAATGATGACCCCG 58.117 40.000 0.00 0.00 0.00 5.73
716 3924 9.775854 CATAGATTAGATATGAATGATGACCCC 57.224 37.037 0.00 0.00 33.30 4.95
717 3925 9.270640 GCATAGATTAGATATGAATGATGACCC 57.729 37.037 0.00 0.00 33.30 4.46
718 3926 9.270640 GGCATAGATTAGATATGAATGATGACC 57.729 37.037 0.00 0.00 33.30 4.02
719 3927 8.976471 CGGCATAGATTAGATATGAATGATGAC 58.024 37.037 0.00 0.00 33.30 3.06
720 3928 8.146412 CCGGCATAGATTAGATATGAATGATGA 58.854 37.037 0.00 0.00 33.30 2.92
721 3929 7.095313 GCCGGCATAGATTAGATATGAATGATG 60.095 40.741 24.80 0.00 33.30 3.07
722 3930 6.933521 GCCGGCATAGATTAGATATGAATGAT 59.066 38.462 24.80 0.00 33.30 2.45
735 3943 2.408333 GCACAAGCCGGCATAGATT 58.592 52.632 31.54 11.17 33.58 2.40
760 3968 0.881118 TTGGCCATTGCGAGAGTTTC 59.119 50.000 6.09 0.00 38.85 2.78
762 3970 1.000274 GTTTTGGCCATTGCGAGAGTT 60.000 47.619 6.09 0.00 38.85 3.01
769 3977 3.333029 AGTATTGGTTTTGGCCATTGC 57.667 42.857 6.09 0.00 38.48 3.56
795 4005 3.250521 TCGTGTCGTTTTGTTTATTCCCC 59.749 43.478 0.00 0.00 0.00 4.81
958 4294 6.334202 GGTATGAAACTCTGAAGTAGGTGAG 58.666 44.000 0.00 0.00 33.48 3.51
985 4321 2.418609 CCGCCATGATCTCTGTGTGTTA 60.419 50.000 0.00 0.00 0.00 2.41
992 4330 2.252346 GCAGCCGCCATGATCTCTG 61.252 63.158 0.00 0.00 0.00 3.35
1007 4345 1.364626 CCAAGACGCCTTAGCTGCAG 61.365 60.000 10.11 10.11 36.60 4.41
1086 4424 0.617820 ACCTGAGGGCGTAGTTCCAT 60.618 55.000 2.38 0.00 35.63 3.41
1211 4549 2.042435 CCTCCTCGGCCTTCTCCT 60.042 66.667 0.00 0.00 0.00 3.69
1292 4704 2.640826 ACAGGTAATTCCAAACGGAGGA 59.359 45.455 0.00 0.00 39.02 3.71
1293 4705 3.007635 GACAGGTAATTCCAAACGGAGG 58.992 50.000 0.00 0.00 39.02 4.30
1294 4706 3.933332 GAGACAGGTAATTCCAAACGGAG 59.067 47.826 0.00 0.00 39.02 4.63
1295 4707 3.615592 CGAGACAGGTAATTCCAAACGGA 60.616 47.826 0.00 0.00 39.02 4.69
1296 4708 2.671396 CGAGACAGGTAATTCCAAACGG 59.329 50.000 0.00 0.00 39.02 4.44
1297 4709 2.671396 CCGAGACAGGTAATTCCAAACG 59.329 50.000 0.00 0.00 39.02 3.60
1298 4710 3.934068 TCCGAGACAGGTAATTCCAAAC 58.066 45.455 0.00 0.00 39.02 2.93
1299 4711 4.627284 TTCCGAGACAGGTAATTCCAAA 57.373 40.909 0.00 0.00 39.02 3.28
1300 4712 4.627284 TTTCCGAGACAGGTAATTCCAA 57.373 40.909 0.00 0.00 39.02 3.53
1301 4713 4.513442 CATTTCCGAGACAGGTAATTCCA 58.487 43.478 0.00 0.00 39.02 3.53
1302 4714 3.877508 CCATTTCCGAGACAGGTAATTCC 59.122 47.826 0.00 0.00 30.33 3.01
1303 4715 4.571176 GTCCATTTCCGAGACAGGTAATTC 59.429 45.833 0.00 0.00 30.33 2.17
1304 4716 4.514401 GTCCATTTCCGAGACAGGTAATT 58.486 43.478 0.00 0.00 30.33 1.40
1305 4717 3.430374 CGTCCATTTCCGAGACAGGTAAT 60.430 47.826 0.00 0.00 32.51 1.89
1306 4718 2.094390 CGTCCATTTCCGAGACAGGTAA 60.094 50.000 0.00 0.00 0.00 2.85
1307 4719 1.475280 CGTCCATTTCCGAGACAGGTA 59.525 52.381 0.00 0.00 0.00 3.08
1308 4720 0.246635 CGTCCATTTCCGAGACAGGT 59.753 55.000 0.00 0.00 0.00 4.00
1309 4721 0.246635 ACGTCCATTTCCGAGACAGG 59.753 55.000 0.00 0.00 0.00 4.00
1310 4722 2.933495 TACGTCCATTTCCGAGACAG 57.067 50.000 0.00 0.00 0.00 3.51
1311 4723 3.880047 AATACGTCCATTTCCGAGACA 57.120 42.857 0.00 0.00 0.00 3.41
1312 4724 5.585390 TCTAAATACGTCCATTTCCGAGAC 58.415 41.667 0.00 0.00 30.84 3.36
1313 4725 5.840243 TCTAAATACGTCCATTTCCGAGA 57.160 39.130 0.00 0.00 30.84 4.04
1314 4726 6.040878 AGTTCTAAATACGTCCATTTCCGAG 58.959 40.000 0.00 0.00 30.84 4.63
1315 4727 5.969423 AGTTCTAAATACGTCCATTTCCGA 58.031 37.500 0.00 0.00 30.84 4.55
1316 4728 7.760131 TTAGTTCTAAATACGTCCATTTCCG 57.240 36.000 0.00 0.00 30.84 4.30
1344 4756 9.938670 GTCGCGAAAATAGATATATCTAGATGT 57.061 33.333 23.38 11.37 42.20 3.06
1345 4757 9.937175 TGTCGCGAAAATAGATATATCTAGATG 57.063 33.333 23.38 13.94 42.20 2.90
1355 4767 8.218441 CGGAATTAATTGTCGCGAAAATAGATA 58.782 33.333 24.19 10.96 0.00 1.98
1356 4768 7.042321 TCGGAATTAATTGTCGCGAAAATAGAT 60.042 33.333 24.19 17.19 0.00 1.98
1357 4769 6.256104 TCGGAATTAATTGTCGCGAAAATAGA 59.744 34.615 24.19 15.78 0.00 1.98
1358 4770 6.415702 TCGGAATTAATTGTCGCGAAAATAG 58.584 36.000 24.19 10.17 0.00 1.73
1359 4771 6.347270 TCGGAATTAATTGTCGCGAAAATA 57.653 33.333 24.19 10.81 0.00 1.40
1360 4772 5.224562 TCGGAATTAATTGTCGCGAAAAT 57.775 34.783 18.82 18.82 0.00 1.82
1361 4773 4.665281 TCGGAATTAATTGTCGCGAAAA 57.335 36.364 15.26 15.26 0.00 2.29
1362 4774 4.396519 GTTCGGAATTAATTGTCGCGAAA 58.603 39.130 12.06 0.54 32.32 3.46
1363 4775 3.482274 CGTTCGGAATTAATTGTCGCGAA 60.482 43.478 12.06 0.00 0.00 4.70
1364 4776 2.028284 CGTTCGGAATTAATTGTCGCGA 59.972 45.455 3.71 3.71 0.00 5.87
1365 4777 2.350616 CGTTCGGAATTAATTGTCGCG 58.649 47.619 5.17 0.00 0.00 5.87
1366 4778 2.349275 TCCGTTCGGAATTAATTGTCGC 59.651 45.455 11.66 0.00 0.00 5.19
1367 4779 3.000925 CCTCCGTTCGGAATTAATTGTCG 59.999 47.826 14.79 9.46 33.41 4.35
1368 4780 3.311596 CCCTCCGTTCGGAATTAATTGTC 59.688 47.826 14.79 0.00 33.41 3.18
1369 4781 3.054948 TCCCTCCGTTCGGAATTAATTGT 60.055 43.478 14.79 0.00 33.41 2.71
1370 4782 3.537580 TCCCTCCGTTCGGAATTAATTG 58.462 45.455 14.79 1.97 33.41 2.32
1371 4783 3.199289 ACTCCCTCCGTTCGGAATTAATT 59.801 43.478 14.79 0.00 33.41 1.40
1372 4784 2.770232 ACTCCCTCCGTTCGGAATTAAT 59.230 45.455 14.79 0.00 33.41 1.40
1373 4785 2.181975 ACTCCCTCCGTTCGGAATTAA 58.818 47.619 14.79 1.25 33.41 1.40
1374 4786 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1375 4787 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
1376 4788 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
1377 4789 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
1378 4790 0.911769 TAGTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
1379 4791 1.307097 CTAGTACTCCCTCCGTTCGG 58.693 60.000 0.00 4.74 0.00 4.30
1380 4792 0.662085 GCTAGTACTCCCTCCGTTCG 59.338 60.000 0.00 0.00 0.00 3.95
1381 4793 2.055684 AGCTAGTACTCCCTCCGTTC 57.944 55.000 0.00 0.00 0.00 3.95
1382 4794 2.158638 CCTAGCTAGTACTCCCTCCGTT 60.159 54.545 19.31 0.00 0.00 4.44
1383 4795 1.420891 CCTAGCTAGTACTCCCTCCGT 59.579 57.143 19.31 0.00 0.00 4.69
1384 4796 1.883209 GCCTAGCTAGTACTCCCTCCG 60.883 61.905 19.31 1.33 0.00 4.63
1385 4797 1.883209 CGCCTAGCTAGTACTCCCTCC 60.883 61.905 19.31 0.00 0.00 4.30
1386 4798 1.202794 ACGCCTAGCTAGTACTCCCTC 60.203 57.143 19.31 0.00 0.00 4.30
1387 4799 0.845337 ACGCCTAGCTAGTACTCCCT 59.155 55.000 19.31 0.00 0.00 4.20
1388 4800 0.953003 CACGCCTAGCTAGTACTCCC 59.047 60.000 19.31 0.00 0.00 4.30
1389 4801 1.603326 GACACGCCTAGCTAGTACTCC 59.397 57.143 19.31 0.91 0.00 3.85
1390 4802 2.288458 CAGACACGCCTAGCTAGTACTC 59.712 54.545 19.31 6.54 0.00 2.59
1414 4836 4.874396 GTGGTTTCAGGCCATAGTACTAAC 59.126 45.833 5.01 0.00 38.40 2.34
1417 4839 2.093658 CGTGGTTTCAGGCCATAGTACT 60.094 50.000 5.01 0.00 38.40 2.73
1460 7871 4.110493 GGATTCCACTCGAAGCCG 57.890 61.111 0.00 0.00 46.61 5.52
1467 7878 3.662759 TTACAATGGGGGATTCCACTC 57.337 47.619 4.63 0.00 39.97 3.51
1468 7879 4.412060 TTTTACAATGGGGGATTCCACT 57.588 40.909 4.63 0.00 39.97 4.00
1509 7920 8.596271 TGAACTGACGTAACAGAAATTTATCA 57.404 30.769 10.93 2.16 40.63 2.15
1526 7937 5.990668 ACAAGGGGAGTAATATGAACTGAC 58.009 41.667 0.00 0.00 0.00 3.51
1563 7974 4.343814 TGCATATTCCTCACCGAGATAACA 59.656 41.667 0.00 0.00 0.00 2.41
1567 7978 4.040829 TCAATGCATATTCCTCACCGAGAT 59.959 41.667 0.00 0.00 0.00 2.75
1568 7979 3.387699 TCAATGCATATTCCTCACCGAGA 59.612 43.478 0.00 0.00 0.00 4.04
1590 8001 2.228822 AGCCGAAACGAAATTCAAGCAT 59.771 40.909 0.00 0.00 33.13 3.79
1653 8065 6.146510 TGAAGTACTTGTAAGTTGTAATGCCG 59.853 38.462 14.14 0.00 40.37 5.69
1727 8139 2.545526 CCCGTAGATGACACATTCATGC 59.454 50.000 0.00 0.00 45.67 4.06
1734 8146 1.964933 TCAACACCCGTAGATGACACA 59.035 47.619 0.00 0.00 0.00 3.72
1739 8151 2.993899 GTCACTTCAACACCCGTAGATG 59.006 50.000 0.00 0.00 0.00 2.90
1744 8156 0.250793 TGTGTCACTTCAACACCCGT 59.749 50.000 4.27 0.00 45.10 5.28
1746 8158 2.038387 AGTGTGTCACTTCAACACCC 57.962 50.000 4.27 0.00 42.59 4.61
1764 8176 9.057089 GTACTGAAGATATGGGAATTTACCAAG 57.943 37.037 3.98 0.00 42.17 3.61
1765 8177 8.778059 AGTACTGAAGATATGGGAATTTACCAA 58.222 33.333 3.98 0.00 42.17 3.67
1768 8180 9.832445 TTCAGTACTGAAGATATGGGAATTTAC 57.168 33.333 30.07 0.00 43.90 2.01
1784 8196 5.047092 TGCTTGATGACATCTTCAGTACTGA 60.047 40.000 21.74 21.74 37.77 3.41
1785 8197 5.173664 TGCTTGATGACATCTTCAGTACTG 58.826 41.667 17.17 17.17 37.77 2.74
1787 8199 6.238320 GGATTGCTTGATGACATCTTCAGTAC 60.238 42.308 16.25 5.78 37.77 2.73
1788 8200 5.819379 GGATTGCTTGATGACATCTTCAGTA 59.181 40.000 16.25 6.74 37.77 2.74
1789 8201 4.639310 GGATTGCTTGATGACATCTTCAGT 59.361 41.667 16.25 8.06 37.77 3.41
1790 8202 4.638865 TGGATTGCTTGATGACATCTTCAG 59.361 41.667 16.25 10.34 37.77 3.02
1796 8208 4.954202 ACTGAATGGATTGCTTGATGACAT 59.046 37.500 0.00 0.00 0.00 3.06
1799 8211 5.477637 TGAAACTGAATGGATTGCTTGATGA 59.522 36.000 0.00 0.00 0.00 2.92
1816 8228 3.786048 GTCAACGAGCAAAACTGAAACTG 59.214 43.478 0.00 0.00 0.00 3.16
1823 8235 0.663153 GCAGGTCAACGAGCAAAACT 59.337 50.000 0.00 0.00 31.89 2.66
1830 8242 1.079543 CTGGAGGCAGGTCAACGAG 60.080 63.158 0.00 0.00 0.00 4.18
1833 8245 1.518903 GCAACTGGAGGCAGGTCAAC 61.519 60.000 0.00 0.00 0.00 3.18
1838 8250 1.975407 CCAAGCAACTGGAGGCAGG 60.975 63.158 0.00 0.00 38.96 4.85
1877 8289 4.101741 ACCTGCAGATGGTAAGGATTAGTC 59.898 45.833 17.39 0.00 35.80 2.59
1909 16580 7.512117 TGGCTCTTCCTATAGTATAGCTCTA 57.488 40.000 11.19 0.00 35.26 2.43
1947 16620 6.368243 CCCTAGGAAACTTAGAAAGAAACGTC 59.632 42.308 11.48 0.00 43.67 4.34
1982 16657 7.656948 CCTCTTGTTGAAAAGCCAATTCATTTA 59.343 33.333 0.00 0.00 36.72 1.40
2047 16723 1.637035 GGAAAGGGGTTAGCCTGGTTA 59.363 52.381 0.00 0.00 34.45 2.85
2070 16746 8.430828 CACTCTTGTATTATCGTCATGCTATTG 58.569 37.037 0.00 0.00 0.00 1.90
2089 16765 5.900425 ACTATGCTGATACTGACACTCTTG 58.100 41.667 0.00 0.00 0.00 3.02
2092 16768 7.040755 ACTGATACTATGCTGATACTGACACTC 60.041 40.741 0.00 0.00 0.00 3.51
2103 16779 4.457466 TCGTGGTACTGATACTATGCTGA 58.543 43.478 0.00 0.00 30.74 4.26
2109 16785 6.127814 CCAAGAAACTCGTGGTACTGATACTA 60.128 42.308 0.96 0.00 40.46 1.82
2119 16795 4.969484 ACTAATTCCAAGAAACTCGTGGT 58.031 39.130 8.22 0.00 44.70 4.16
2174 16850 0.244178 GGAGAAGACACCGGAGTCAC 59.756 60.000 29.95 22.68 40.98 3.67
2175 16851 0.178973 TGGAGAAGACACCGGAGTCA 60.179 55.000 29.95 9.51 40.98 3.41
2176 16852 1.135333 GATGGAGAAGACACCGGAGTC 59.865 57.143 22.82 22.82 38.81 3.36
2177 16853 1.187087 GATGGAGAAGACACCGGAGT 58.813 55.000 9.46 6.23 0.00 3.85
2178 16854 1.135915 CTGATGGAGAAGACACCGGAG 59.864 57.143 9.46 1.26 0.00 4.63
2179 16855 1.186200 CTGATGGAGAAGACACCGGA 58.814 55.000 9.46 0.00 0.00 5.14
2180 16856 1.134965 GTCTGATGGAGAAGACACCGG 60.135 57.143 0.00 0.00 42.01 5.28
2181 16857 1.468224 CGTCTGATGGAGAAGACACCG 60.468 57.143 3.94 0.00 42.45 4.94
2182 16858 1.546476 ACGTCTGATGGAGAAGACACC 59.454 52.381 1.43 0.00 42.45 4.16
2183 16859 2.989840 CAACGTCTGATGGAGAAGACAC 59.010 50.000 1.43 0.00 42.45 3.67
2184 16860 2.890945 TCAACGTCTGATGGAGAAGACA 59.109 45.455 1.43 0.00 42.45 3.41
2185 16861 3.246619 GTCAACGTCTGATGGAGAAGAC 58.753 50.000 1.43 0.00 39.57 3.01
2186 16862 2.890945 TGTCAACGTCTGATGGAGAAGA 59.109 45.455 1.43 0.00 36.14 2.87
2187 16863 3.249091 CTGTCAACGTCTGATGGAGAAG 58.751 50.000 1.43 0.00 36.14 2.85
2188 16864 2.610479 GCTGTCAACGTCTGATGGAGAA 60.610 50.000 1.43 0.00 36.14 2.87
2189 16865 1.067565 GCTGTCAACGTCTGATGGAGA 60.068 52.381 1.43 0.00 36.14 3.71
2190 16866 1.337167 TGCTGTCAACGTCTGATGGAG 60.337 52.381 1.43 0.00 36.14 3.86
2191 16867 0.678950 TGCTGTCAACGTCTGATGGA 59.321 50.000 1.43 0.00 36.14 3.41
2192 16868 1.462283 CTTGCTGTCAACGTCTGATGG 59.538 52.381 1.43 0.00 36.14 3.51
2193 16869 1.136141 GCTTGCTGTCAACGTCTGATG 60.136 52.381 0.00 0.00 36.14 3.07
2194 16870 1.151668 GCTTGCTGTCAACGTCTGAT 58.848 50.000 0.00 0.00 36.14 2.90
2195 16871 0.104855 AGCTTGCTGTCAACGTCTGA 59.895 50.000 0.00 0.00 0.00 3.27
2196 16872 0.510359 GAGCTTGCTGTCAACGTCTG 59.490 55.000 0.00 0.00 0.00 3.51
2197 16873 0.104855 TGAGCTTGCTGTCAACGTCT 59.895 50.000 0.00 0.00 0.00 4.18
2198 16874 0.233332 GTGAGCTTGCTGTCAACGTC 59.767 55.000 0.00 0.00 0.00 4.34
2199 16875 0.461870 TGTGAGCTTGCTGTCAACGT 60.462 50.000 0.00 0.00 0.00 3.99
2200 16876 0.041839 GTGTGAGCTTGCTGTCAACG 60.042 55.000 0.00 0.00 0.00 4.10
2201 16877 1.003116 CTGTGTGAGCTTGCTGTCAAC 60.003 52.381 0.00 0.00 0.00 3.18
2202 16878 1.302366 CTGTGTGAGCTTGCTGTCAA 58.698 50.000 0.00 0.00 0.00 3.18
2203 16879 1.162181 GCTGTGTGAGCTTGCTGTCA 61.162 55.000 0.00 0.00 45.21 3.58
2204 16880 1.573436 GCTGTGTGAGCTTGCTGTC 59.427 57.895 0.00 0.00 45.21 3.51
2205 16881 3.741860 GCTGTGTGAGCTTGCTGT 58.258 55.556 0.00 0.00 45.21 4.40
2213 16889 0.107508 CATACCAGGGGCTGTGTGAG 60.108 60.000 0.00 0.00 0.00 3.51
2214 16890 1.561769 CCATACCAGGGGCTGTGTGA 61.562 60.000 0.00 0.00 0.00 3.58
2215 16891 1.077501 CCATACCAGGGGCTGTGTG 60.078 63.158 0.00 0.00 0.00 3.82
2216 16892 1.541368 ACCATACCAGGGGCTGTGT 60.541 57.895 0.00 0.00 0.00 3.72
2217 16893 1.077501 CACCATACCAGGGGCTGTG 60.078 63.158 0.00 0.00 0.00 3.66
2218 16894 2.308722 CCACCATACCAGGGGCTGT 61.309 63.158 0.00 0.00 0.00 4.40
2219 16895 2.000701 TCCACCATACCAGGGGCTG 61.001 63.158 0.00 0.00 0.00 4.85
2220 16896 2.001269 GTCCACCATACCAGGGGCT 61.001 63.158 0.00 0.00 0.00 5.19
2221 16897 1.858739 TTGTCCACCATACCAGGGGC 61.859 60.000 0.00 0.00 0.00 5.80
2222 16898 0.701731 TTTGTCCACCATACCAGGGG 59.298 55.000 0.00 0.00 0.00 4.79
2223 16899 2.167662 GTTTTGTCCACCATACCAGGG 58.832 52.381 0.00 0.00 0.00 4.45
2224 16900 2.167662 GGTTTTGTCCACCATACCAGG 58.832 52.381 0.00 0.00 34.04 4.45
2225 16901 2.870175 TGGTTTTGTCCACCATACCAG 58.130 47.619 0.00 0.00 39.53 4.00
2226 16902 3.117474 TCTTGGTTTTGTCCACCATACCA 60.117 43.478 0.00 0.00 44.05 3.25
2227 16903 3.492337 TCTTGGTTTTGTCCACCATACC 58.508 45.455 0.00 0.00 44.05 2.73
2228 16904 4.023193 CACTCTTGGTTTTGTCCACCATAC 60.023 45.833 0.00 0.00 44.05 2.39
2229 16905 4.141287 CACTCTTGGTTTTGTCCACCATA 58.859 43.478 0.00 0.00 44.05 2.74
2230 16906 2.958355 CACTCTTGGTTTTGTCCACCAT 59.042 45.455 0.00 0.00 44.05 3.55
2231 16907 2.291282 ACACTCTTGGTTTTGTCCACCA 60.291 45.455 0.00 0.00 42.90 4.17
2232 16908 2.357952 GACACTCTTGGTTTTGTCCACC 59.642 50.000 0.00 0.00 37.20 4.61
2233 16909 3.013921 TGACACTCTTGGTTTTGTCCAC 58.986 45.455 0.00 0.00 38.06 4.02
2234 16910 3.278574 CTGACACTCTTGGTTTTGTCCA 58.721 45.455 0.00 0.00 38.06 4.02
2235 16911 3.279434 ACTGACACTCTTGGTTTTGTCC 58.721 45.455 0.00 0.00 38.06 4.02
2236 16912 5.758296 TGATACTGACACTCTTGGTTTTGTC 59.242 40.000 0.00 0.00 39.09 3.18
2237 16913 5.680619 TGATACTGACACTCTTGGTTTTGT 58.319 37.500 0.00 0.00 0.00 2.83
2238 16914 6.808008 ATGATACTGACACTCTTGGTTTTG 57.192 37.500 0.00 0.00 0.00 2.44
2239 16915 8.918202 TTAATGATACTGACACTCTTGGTTTT 57.082 30.769 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.