Multiple sequence alignment - TraesCS2B01G560600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G560600 chr2B 100.000 2708 0 0 1 2708 753923980 753926687 0.000000e+00 5001
1 TraesCS2B01G560600 chr2B 82.629 213 28 7 2422 2631 104791915 104792121 2.140000e-41 180
2 TraesCS2B01G560600 chr3D 94.342 2121 119 1 5 2124 486129933 486127813 0.000000e+00 3251
3 TraesCS2B01G560600 chr6B 93.791 2126 127 5 1 2125 695534130 695532009 0.000000e+00 3190
4 TraesCS2B01G560600 chr6B 93.861 1906 113 4 221 2124 63196680 63198583 0.000000e+00 2868
5 TraesCS2B01G560600 chr6B 93.599 1906 118 4 221 2124 63185590 63187493 0.000000e+00 2841
6 TraesCS2B01G560600 chr2A 93.054 2073 142 2 54 2125 120011074 120013145 0.000000e+00 3029
7 TraesCS2B01G560600 chr2A 93.485 307 14 5 2408 2708 748213122 748212816 4.110000e-123 451
8 TraesCS2B01G560600 chr2A 86.885 122 10 5 2298 2417 748213274 748213157 6.080000e-27 132
9 TraesCS2B01G560600 chr5A 91.694 2131 148 16 5 2124 250551781 250553893 0.000000e+00 2928
10 TraesCS2B01G560600 chrUn 93.861 1906 113 4 221 2124 320450955 320452858 0.000000e+00 2868
11 TraesCS2B01G560600 chr7B 93.704 1906 116 4 221 2124 66496842 66498745 0.000000e+00 2852
12 TraesCS2B01G560600 chr3B 93.421 1900 119 5 226 2124 808500226 808502120 0.000000e+00 2811


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G560600 chr2B 753923980 753926687 2707 False 5001 5001 100.000 1 2708 1 chr2B.!!$F2 2707
1 TraesCS2B01G560600 chr3D 486127813 486129933 2120 True 3251 3251 94.342 5 2124 1 chr3D.!!$R1 2119
2 TraesCS2B01G560600 chr6B 695532009 695534130 2121 True 3190 3190 93.791 1 2125 1 chr6B.!!$R1 2124
3 TraesCS2B01G560600 chr6B 63196680 63198583 1903 False 2868 2868 93.861 221 2124 1 chr6B.!!$F2 1903
4 TraesCS2B01G560600 chr6B 63185590 63187493 1903 False 2841 2841 93.599 221 2124 1 chr6B.!!$F1 1903
5 TraesCS2B01G560600 chr2A 120011074 120013145 2071 False 3029 3029 93.054 54 2125 1 chr2A.!!$F1 2071
6 TraesCS2B01G560600 chr5A 250551781 250553893 2112 False 2928 2928 91.694 5 2124 1 chr5A.!!$F1 2119
7 TraesCS2B01G560600 chrUn 320450955 320452858 1903 False 2868 2868 93.861 221 2124 1 chrUn.!!$F1 1903
8 TraesCS2B01G560600 chr7B 66496842 66498745 1903 False 2852 2852 93.704 221 2124 1 chr7B.!!$F1 1903
9 TraesCS2B01G560600 chr3B 808500226 808502120 1894 False 2811 2811 93.421 226 2124 1 chr3B.!!$F1 1898

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
259 269 0.037326 TTCAGGCGCGTCTTCTTCAT 60.037 50.0 12.35 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2173 2185 0.107831 AGTAGCGAAGTTTGCCCACA 59.892 50.0 11.66 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.341101 CGCCTCGGTGTCACCTAGT 61.341 63.158 19.82 0.00 35.66 2.57
170 171 2.524394 ACCCGAGGCACTGTCACT 60.524 61.111 0.00 0.00 41.55 3.41
203 204 3.121030 GCCGACTGTTGCATCGCT 61.121 61.111 1.89 0.00 37.01 4.93
259 269 0.037326 TTCAGGCGCGTCTTCTTCAT 60.037 50.000 12.35 0.00 0.00 2.57
295 305 2.121992 CTCCTCTGTGGTGGCTGCTT 62.122 60.000 0.00 0.00 37.07 3.91
299 309 1.228063 CTGTGGTGGCTGCTTCACT 60.228 57.895 16.42 0.00 35.61 3.41
386 396 1.509644 CGCACTGATGGCACTGTTGT 61.510 55.000 0.00 0.00 0.00 3.32
498 508 0.602562 CTGCGATGGAGGAGGAGATC 59.397 60.000 0.00 0.00 0.00 2.75
570 580 8.200120 TCTGGTGTCAATATCATTGACTCTAAG 58.800 37.037 24.67 21.12 46.53 2.18
576 586 7.225538 GTCAATATCATTGACTCTAAGTGGGTG 59.774 40.741 19.81 0.00 43.91 4.61
813 823 2.093658 GGAGGAAGAGGTTTACATGCGA 60.094 50.000 0.00 0.00 0.00 5.10
921 931 1.303561 ATGGCATGCACGTCTTGGT 60.304 52.632 21.36 0.00 0.00 3.67
966 976 1.153369 GCCTTCTGCAGCGGATACA 60.153 57.895 21.61 0.00 40.77 2.29
990 1000 5.060506 TCTTTGTTTATCTTTCAGCGACCA 58.939 37.500 0.00 0.00 0.00 4.02
1065 1075 2.341807 CTGCTGCTGCTACGGATCGA 62.342 60.000 17.00 0.00 40.48 3.59
1085 1095 2.103263 GACTTGTGTCCTCTCTTGGTGT 59.897 50.000 0.00 0.00 37.24 4.16
1113 1123 2.293170 GCTGTTAAGGATCTTGGGAGC 58.707 52.381 0.00 0.00 0.00 4.70
1158 1168 1.066143 GTTCTTCCTTCTGATGGCGGA 60.066 52.381 4.76 3.23 0.00 5.54
1245 1255 0.103208 CTGCTACGACTCCCATGTCC 59.897 60.000 0.00 0.00 33.70 4.02
1399 1409 1.066215 TGTGCCAGTATCTTCATGCGT 60.066 47.619 0.00 0.00 0.00 5.24
1496 1506 2.104530 GTCGGCGCCTTCTAGACC 59.895 66.667 26.68 5.13 0.00 3.85
1506 1516 2.582052 CCTTCTAGACCGATCTCTGCT 58.418 52.381 0.00 0.00 36.29 4.24
1513 1523 4.278975 AGACCGATCTCTGCTTTTTCTT 57.721 40.909 0.00 0.00 0.00 2.52
1518 1528 4.574013 CCGATCTCTGCTTTTTCTTATGCT 59.426 41.667 0.00 0.00 0.00 3.79
1653 1664 1.002544 ACTGAAGCTGAGTACAAGGCC 59.997 52.381 0.00 0.00 0.00 5.19
1729 1741 1.908299 TCTCTCCAACTCAGCCGCA 60.908 57.895 0.00 0.00 0.00 5.69
1799 1811 1.002251 GTGTTTCATGCCCGAACGAAA 60.002 47.619 0.00 0.00 0.00 3.46
1895 1907 7.544804 TTCTAAGGATCAGCTTGCTGATATA 57.455 36.000 30.46 22.60 43.38 0.86
1906 1918 7.986889 TCAGCTTGCTGATATATTCACTAAACA 59.013 33.333 19.87 0.00 0.00 2.83
1963 1975 6.513393 CGCAATCTTAACCTTCTGAGTGTTTT 60.513 38.462 0.25 0.00 0.00 2.43
2007 2019 7.011382 AGGGAGGGTGTTAGACTAAGTATATG 58.989 42.308 0.00 0.00 0.00 1.78
2111 2123 2.817258 CGAGCATTGTTCCAAACCCTAA 59.183 45.455 0.00 0.00 0.00 2.69
2124 2136 9.163899 GTTCCAAACCCTAATTTGTTTTAACAA 57.836 29.630 4.02 4.02 46.35 2.83
2146 2158 9.971922 AACAATTACTAACCCATATACTCGTAC 57.028 33.333 0.00 0.00 0.00 3.67
2147 2159 9.359653 ACAATTACTAACCCATATACTCGTACT 57.640 33.333 0.00 0.00 0.00 2.73
2148 2160 9.622004 CAATTACTAACCCATATACTCGTACTG 57.378 37.037 0.00 0.00 0.00 2.74
2149 2161 8.930846 ATTACTAACCCATATACTCGTACTGT 57.069 34.615 0.00 0.00 0.00 3.55
2152 2164 8.930846 ACTAACCCATATACTCGTACTGTATT 57.069 34.615 11.74 0.62 33.32 1.89
2153 2165 9.359653 ACTAACCCATATACTCGTACTGTATTT 57.640 33.333 11.74 4.29 33.32 1.40
2154 2166 9.837525 CTAACCCATATACTCGTACTGTATTTC 57.162 37.037 11.74 0.00 33.32 2.17
2155 2167 7.828508 ACCCATATACTCGTACTGTATTTCA 57.171 36.000 11.74 0.00 33.32 2.69
2156 2168 8.418597 ACCCATATACTCGTACTGTATTTCAT 57.581 34.615 11.74 1.08 33.32 2.57
2157 2169 8.521176 ACCCATATACTCGTACTGTATTTCATC 58.479 37.037 11.74 0.00 33.32 2.92
2158 2170 7.974501 CCCATATACTCGTACTGTATTTCATCC 59.025 40.741 11.74 0.00 33.32 3.51
2159 2171 8.740906 CCATATACTCGTACTGTATTTCATCCT 58.259 37.037 11.74 0.00 33.32 3.24
2162 2174 6.282199 ACTCGTACTGTATTTCATCCTTGT 57.718 37.500 0.00 0.00 0.00 3.16
2163 2175 6.331061 ACTCGTACTGTATTTCATCCTTGTC 58.669 40.000 0.00 0.00 0.00 3.18
2164 2176 6.153000 ACTCGTACTGTATTTCATCCTTGTCT 59.847 38.462 0.00 0.00 0.00 3.41
2165 2177 6.561614 TCGTACTGTATTTCATCCTTGTCTC 58.438 40.000 0.00 0.00 0.00 3.36
2166 2178 5.749109 CGTACTGTATTTCATCCTTGTCTCC 59.251 44.000 0.00 0.00 0.00 3.71
2167 2179 5.762179 ACTGTATTTCATCCTTGTCTCCA 57.238 39.130 0.00 0.00 0.00 3.86
2168 2180 5.738909 ACTGTATTTCATCCTTGTCTCCAG 58.261 41.667 0.00 0.00 0.00 3.86
2169 2181 5.485353 ACTGTATTTCATCCTTGTCTCCAGA 59.515 40.000 0.00 0.00 0.00 3.86
2170 2182 5.982356 TGTATTTCATCCTTGTCTCCAGAG 58.018 41.667 0.00 0.00 0.00 3.35
2171 2183 3.340814 TTTCATCCTTGTCTCCAGAGC 57.659 47.619 0.00 0.00 0.00 4.09
2172 2184 0.820226 TCATCCTTGTCTCCAGAGCG 59.180 55.000 0.00 0.00 0.00 5.03
2173 2185 0.534412 CATCCTTGTCTCCAGAGCGT 59.466 55.000 0.00 0.00 0.00 5.07
2174 2186 0.534412 ATCCTTGTCTCCAGAGCGTG 59.466 55.000 0.00 0.00 0.00 5.34
2175 2187 0.827925 TCCTTGTCTCCAGAGCGTGT 60.828 55.000 0.00 0.00 0.00 4.49
2176 2188 0.668706 CCTTGTCTCCAGAGCGTGTG 60.669 60.000 0.00 0.00 0.00 3.82
2177 2189 0.668706 CTTGTCTCCAGAGCGTGTGG 60.669 60.000 0.00 0.00 36.28 4.17
2178 2190 2.099652 TTGTCTCCAGAGCGTGTGGG 62.100 60.000 2.65 0.00 35.58 4.61
2179 2191 3.695606 TCTCCAGAGCGTGTGGGC 61.696 66.667 2.65 0.00 35.58 5.36
2180 2192 4.007644 CTCCAGAGCGTGTGGGCA 62.008 66.667 2.65 0.00 35.58 5.36
2181 2193 3.535629 CTCCAGAGCGTGTGGGCAA 62.536 63.158 2.65 0.00 35.58 4.52
2182 2194 2.594303 CCAGAGCGTGTGGGCAAA 60.594 61.111 0.00 0.00 34.64 3.68
2183 2195 2.639286 CAGAGCGTGTGGGCAAAC 59.361 61.111 0.00 0.00 34.64 2.93
2184 2196 1.893808 CAGAGCGTGTGGGCAAACT 60.894 57.895 0.00 0.00 34.64 2.66
2185 2197 1.152963 AGAGCGTGTGGGCAAACTT 60.153 52.632 0.00 0.00 34.64 2.66
2186 2198 1.166531 AGAGCGTGTGGGCAAACTTC 61.167 55.000 0.00 0.00 34.64 3.01
2187 2199 2.051345 GCGTGTGGGCAAACTTCG 60.051 61.111 0.00 0.00 0.00 3.79
2188 2200 2.051345 CGTGTGGGCAAACTTCGC 60.051 61.111 0.00 0.00 0.00 4.70
2189 2201 2.542907 CGTGTGGGCAAACTTCGCT 61.543 57.895 0.00 0.00 0.00 4.93
2190 2202 1.225376 CGTGTGGGCAAACTTCGCTA 61.225 55.000 0.00 0.00 0.00 4.26
2191 2203 0.237498 GTGTGGGCAAACTTCGCTAC 59.763 55.000 0.00 0.00 0.00 3.58
2192 2204 0.107831 TGTGGGCAAACTTCGCTACT 59.892 50.000 0.00 0.00 0.00 2.57
2193 2205 1.235724 GTGGGCAAACTTCGCTACTT 58.764 50.000 0.00 0.00 0.00 2.24
2194 2206 1.069227 GTGGGCAAACTTCGCTACTTG 60.069 52.381 0.00 0.00 0.00 3.16
2195 2207 1.235724 GGGCAAACTTCGCTACTTGT 58.764 50.000 0.00 0.00 0.00 3.16
2196 2208 2.224329 TGGGCAAACTTCGCTACTTGTA 60.224 45.455 0.00 0.00 0.00 2.41
2197 2209 2.159037 GGGCAAACTTCGCTACTTGTAC 59.841 50.000 0.00 0.00 0.00 2.90
2198 2210 3.064931 GGCAAACTTCGCTACTTGTACT 58.935 45.455 0.00 0.00 0.00 2.73
2199 2211 4.240096 GGCAAACTTCGCTACTTGTACTA 58.760 43.478 0.00 0.00 0.00 1.82
2200 2212 4.687483 GGCAAACTTCGCTACTTGTACTAA 59.313 41.667 0.00 0.00 0.00 2.24
2201 2213 5.163982 GGCAAACTTCGCTACTTGTACTAAG 60.164 44.000 0.00 0.00 0.00 2.18
2202 2214 5.163982 GCAAACTTCGCTACTTGTACTAAGG 60.164 44.000 9.05 0.00 0.00 2.69
2203 2215 5.972107 AACTTCGCTACTTGTACTAAGGA 57.028 39.130 9.05 1.38 0.00 3.36
2204 2216 5.972107 ACTTCGCTACTTGTACTAAGGAA 57.028 39.130 9.05 3.71 0.00 3.36
2205 2217 6.336842 ACTTCGCTACTTGTACTAAGGAAA 57.663 37.500 9.05 0.00 0.00 3.13
2206 2218 6.388278 ACTTCGCTACTTGTACTAAGGAAAG 58.612 40.000 9.05 5.09 0.00 2.62
2207 2219 6.208204 ACTTCGCTACTTGTACTAAGGAAAGA 59.792 38.462 9.05 2.17 0.00 2.52
2208 2220 6.579666 TCGCTACTTGTACTAAGGAAAGAA 57.420 37.500 9.05 0.00 0.00 2.52
2209 2221 6.985117 TCGCTACTTGTACTAAGGAAAGAAA 58.015 36.000 9.05 0.00 0.00 2.52
2210 2222 6.865205 TCGCTACTTGTACTAAGGAAAGAAAC 59.135 38.462 9.05 0.00 0.00 2.78
2211 2223 6.183359 CGCTACTTGTACTAAGGAAAGAAACG 60.183 42.308 9.05 0.00 0.00 3.60
2212 2224 6.644181 GCTACTTGTACTAAGGAAAGAAACGT 59.356 38.462 9.05 0.00 0.00 3.99
2213 2225 6.839820 ACTTGTACTAAGGAAAGAAACGTG 57.160 37.500 0.00 0.00 0.00 4.49
2214 2226 6.576185 ACTTGTACTAAGGAAAGAAACGTGA 58.424 36.000 0.00 0.00 0.00 4.35
2215 2227 6.700520 ACTTGTACTAAGGAAAGAAACGTGAG 59.299 38.462 0.00 0.00 0.00 3.51
2231 2243 4.065789 ACGTGAGTCTTCATTTTCCTTCC 58.934 43.478 0.00 0.00 44.19 3.46
2232 2244 3.437049 CGTGAGTCTTCATTTTCCTTCCC 59.563 47.826 0.00 0.00 35.39 3.97
2233 2245 4.657013 GTGAGTCTTCATTTTCCTTCCCT 58.343 43.478 0.00 0.00 35.39 4.20
2234 2246 5.073428 GTGAGTCTTCATTTTCCTTCCCTT 58.927 41.667 0.00 0.00 35.39 3.95
2235 2247 5.182190 GTGAGTCTTCATTTTCCTTCCCTTC 59.818 44.000 0.00 0.00 35.39 3.46
2236 2248 5.073691 TGAGTCTTCATTTTCCTTCCCTTCT 59.926 40.000 0.00 0.00 0.00 2.85
2237 2249 5.565509 AGTCTTCATTTTCCTTCCCTTCTC 58.434 41.667 0.00 0.00 0.00 2.87
2238 2250 5.073691 AGTCTTCATTTTCCTTCCCTTCTCA 59.926 40.000 0.00 0.00 0.00 3.27
2239 2251 5.948758 GTCTTCATTTTCCTTCCCTTCTCAT 59.051 40.000 0.00 0.00 0.00 2.90
2240 2252 6.094742 GTCTTCATTTTCCTTCCCTTCTCATC 59.905 42.308 0.00 0.00 0.00 2.92
2241 2253 4.517285 TCATTTTCCTTCCCTTCTCATCG 58.483 43.478 0.00 0.00 0.00 3.84
2242 2254 4.019321 TCATTTTCCTTCCCTTCTCATCGT 60.019 41.667 0.00 0.00 0.00 3.73
2243 2255 3.611766 TTTCCTTCCCTTCTCATCGTC 57.388 47.619 0.00 0.00 0.00 4.20
2244 2256 2.231716 TCCTTCCCTTCTCATCGTCA 57.768 50.000 0.00 0.00 0.00 4.35
2245 2257 1.825474 TCCTTCCCTTCTCATCGTCAC 59.175 52.381 0.00 0.00 0.00 3.67
2246 2258 1.827969 CCTTCCCTTCTCATCGTCACT 59.172 52.381 0.00 0.00 0.00 3.41
2247 2259 2.417924 CCTTCCCTTCTCATCGTCACTG 60.418 54.545 0.00 0.00 0.00 3.66
2248 2260 0.532573 TCCCTTCTCATCGTCACTGC 59.467 55.000 0.00 0.00 0.00 4.40
2249 2261 0.534412 CCCTTCTCATCGTCACTGCT 59.466 55.000 0.00 0.00 0.00 4.24
2250 2262 1.066573 CCCTTCTCATCGTCACTGCTT 60.067 52.381 0.00 0.00 0.00 3.91
2251 2263 2.266554 CCTTCTCATCGTCACTGCTTC 58.733 52.381 0.00 0.00 0.00 3.86
2252 2264 2.094286 CCTTCTCATCGTCACTGCTTCT 60.094 50.000 0.00 0.00 0.00 2.85
2253 2265 3.583806 CTTCTCATCGTCACTGCTTCTT 58.416 45.455 0.00 0.00 0.00 2.52
2254 2266 4.380973 CCTTCTCATCGTCACTGCTTCTTA 60.381 45.833 0.00 0.00 0.00 2.10
2255 2267 4.991153 TCTCATCGTCACTGCTTCTTAT 57.009 40.909 0.00 0.00 0.00 1.73
2256 2268 4.926244 TCTCATCGTCACTGCTTCTTATC 58.074 43.478 0.00 0.00 0.00 1.75
2257 2269 4.046938 TCATCGTCACTGCTTCTTATCC 57.953 45.455 0.00 0.00 0.00 2.59
2258 2270 2.961526 TCGTCACTGCTTCTTATCCC 57.038 50.000 0.00 0.00 0.00 3.85
2259 2271 2.457598 TCGTCACTGCTTCTTATCCCT 58.542 47.619 0.00 0.00 0.00 4.20
2260 2272 2.832129 TCGTCACTGCTTCTTATCCCTT 59.168 45.455 0.00 0.00 0.00 3.95
2261 2273 3.260884 TCGTCACTGCTTCTTATCCCTTT 59.739 43.478 0.00 0.00 0.00 3.11
2262 2274 3.619038 CGTCACTGCTTCTTATCCCTTTC 59.381 47.826 0.00 0.00 0.00 2.62
2263 2275 3.942115 GTCACTGCTTCTTATCCCTTTCC 59.058 47.826 0.00 0.00 0.00 3.13
2264 2276 3.846588 TCACTGCTTCTTATCCCTTTCCT 59.153 43.478 0.00 0.00 0.00 3.36
2265 2277 4.080863 TCACTGCTTCTTATCCCTTTCCTC 60.081 45.833 0.00 0.00 0.00 3.71
2266 2278 3.118592 ACTGCTTCTTATCCCTTTCCTCG 60.119 47.826 0.00 0.00 0.00 4.63
2267 2279 2.838202 TGCTTCTTATCCCTTTCCTCGT 59.162 45.455 0.00 0.00 0.00 4.18
2268 2280 4.028131 TGCTTCTTATCCCTTTCCTCGTA 58.972 43.478 0.00 0.00 0.00 3.43
2269 2281 4.468510 TGCTTCTTATCCCTTTCCTCGTAA 59.531 41.667 0.00 0.00 0.00 3.18
2270 2282 5.051153 GCTTCTTATCCCTTTCCTCGTAAG 58.949 45.833 0.00 0.00 0.00 2.34
2271 2283 4.667519 TCTTATCCCTTTCCTCGTAAGC 57.332 45.455 0.00 0.00 37.18 3.09
2272 2284 4.287552 TCTTATCCCTTTCCTCGTAAGCT 58.712 43.478 0.00 0.00 37.18 3.74
2273 2285 4.715297 TCTTATCCCTTTCCTCGTAAGCTT 59.285 41.667 3.48 3.48 37.18 3.74
2274 2286 2.762535 TCCCTTTCCTCGTAAGCTTG 57.237 50.000 9.86 0.00 37.18 4.01
2275 2287 1.975680 TCCCTTTCCTCGTAAGCTTGT 59.024 47.619 9.86 0.00 37.18 3.16
2276 2288 2.028385 TCCCTTTCCTCGTAAGCTTGTC 60.028 50.000 9.86 1.13 37.18 3.18
2277 2289 1.993370 CCTTTCCTCGTAAGCTTGTCG 59.007 52.381 9.86 13.80 37.18 4.35
2278 2290 1.390463 CTTTCCTCGTAAGCTTGTCGC 59.610 52.381 9.86 0.00 39.57 5.19
2279 2291 0.389426 TTCCTCGTAAGCTTGTCGCC 60.389 55.000 9.86 0.00 40.39 5.54
2280 2292 1.080093 CCTCGTAAGCTTGTCGCCA 60.080 57.895 9.86 0.00 40.39 5.69
2281 2293 0.669318 CCTCGTAAGCTTGTCGCCAA 60.669 55.000 9.86 0.00 40.39 4.52
2282 2294 1.144969 CTCGTAAGCTTGTCGCCAAA 58.855 50.000 9.86 0.00 40.39 3.28
2283 2295 1.732259 CTCGTAAGCTTGTCGCCAAAT 59.268 47.619 9.86 0.00 40.39 2.32
2284 2296 1.730064 TCGTAAGCTTGTCGCCAAATC 59.270 47.619 9.86 0.00 40.39 2.17
2285 2297 1.526986 CGTAAGCTTGTCGCCAAATCG 60.527 52.381 9.86 0.00 40.39 3.34
2286 2298 1.463444 GTAAGCTTGTCGCCAAATCGT 59.537 47.619 9.86 0.00 40.39 3.73
2287 2299 0.951558 AAGCTTGTCGCCAAATCGTT 59.048 45.000 0.00 0.00 40.39 3.85
2288 2300 0.517316 AGCTTGTCGCCAAATCGTTC 59.483 50.000 0.00 0.00 40.39 3.95
2289 2301 0.454452 GCTTGTCGCCAAATCGTTCC 60.454 55.000 0.00 0.00 0.00 3.62
2290 2302 0.871722 CTTGTCGCCAAATCGTTCCA 59.128 50.000 0.00 0.00 0.00 3.53
2291 2303 1.265635 CTTGTCGCCAAATCGTTCCAA 59.734 47.619 0.00 0.00 0.00 3.53
2292 2304 0.871722 TGTCGCCAAATCGTTCCAAG 59.128 50.000 0.00 0.00 0.00 3.61
2293 2305 0.872388 GTCGCCAAATCGTTCCAAGT 59.128 50.000 0.00 0.00 0.00 3.16
2294 2306 2.070783 GTCGCCAAATCGTTCCAAGTA 58.929 47.619 0.00 0.00 0.00 2.24
2295 2307 2.676342 GTCGCCAAATCGTTCCAAGTAT 59.324 45.455 0.00 0.00 0.00 2.12
2296 2308 3.126343 GTCGCCAAATCGTTCCAAGTATT 59.874 43.478 0.00 0.00 0.00 1.89
2298 2310 3.119990 CGCCAAATCGTTCCAAGTATTGT 60.120 43.478 0.00 0.00 46.99 2.71
2299 2311 4.412207 GCCAAATCGTTCCAAGTATTGTC 58.588 43.478 0.00 0.00 46.99 3.18
2300 2312 4.647964 CCAAATCGTTCCAAGTATTGTCG 58.352 43.478 0.00 0.00 46.99 4.35
2301 2313 4.390603 CCAAATCGTTCCAAGTATTGTCGA 59.609 41.667 0.00 0.00 46.99 4.20
2302 2314 5.313623 CAAATCGTTCCAAGTATTGTCGAC 58.686 41.667 9.11 9.11 46.99 4.20
2303 2315 2.950433 TCGTTCCAAGTATTGTCGACC 58.050 47.619 14.12 0.00 46.99 4.79
2304 2316 2.559668 TCGTTCCAAGTATTGTCGACCT 59.440 45.455 14.12 2.81 46.99 3.85
2305 2317 3.006110 TCGTTCCAAGTATTGTCGACCTT 59.994 43.478 14.12 6.02 46.99 3.50
2306 2318 3.122948 CGTTCCAAGTATTGTCGACCTTG 59.877 47.826 19.42 19.42 46.99 3.61
2307 2319 4.062991 GTTCCAAGTATTGTCGACCTTGT 58.937 43.478 22.48 7.60 46.99 3.16
2308 2320 3.659786 TCCAAGTATTGTCGACCTTGTG 58.340 45.455 22.48 16.53 46.99 3.33
2309 2321 3.070446 TCCAAGTATTGTCGACCTTGTGT 59.930 43.478 22.48 1.85 46.99 3.72
2310 2322 3.432252 CCAAGTATTGTCGACCTTGTGTC 59.568 47.826 22.48 6.38 46.99 3.67
2311 2323 4.055360 CAAGTATTGTCGACCTTGTGTCA 58.945 43.478 14.12 0.00 42.02 3.58
2312 2324 4.330944 AGTATTGTCGACCTTGTGTCAA 57.669 40.909 14.12 0.00 44.71 3.18
2313 2325 4.894784 AGTATTGTCGACCTTGTGTCAAT 58.105 39.130 14.12 6.01 44.71 2.57
2314 2326 4.929808 AGTATTGTCGACCTTGTGTCAATC 59.070 41.667 14.12 0.00 44.71 2.67
2315 2327 2.900716 TGTCGACCTTGTGTCAATCA 57.099 45.000 14.12 0.00 44.71 2.57
2316 2328 3.401033 TGTCGACCTTGTGTCAATCAT 57.599 42.857 14.12 0.00 44.71 2.45
2317 2329 3.738982 TGTCGACCTTGTGTCAATCATT 58.261 40.909 14.12 0.00 44.71 2.57
2318 2330 4.133820 TGTCGACCTTGTGTCAATCATTT 58.866 39.130 14.12 0.00 44.71 2.32
2319 2331 4.024133 TGTCGACCTTGTGTCAATCATTTG 60.024 41.667 14.12 0.00 44.71 2.32
2320 2332 4.024048 GTCGACCTTGTGTCAATCATTTGT 60.024 41.667 3.51 0.00 44.71 2.83
2321 2333 5.178623 GTCGACCTTGTGTCAATCATTTGTA 59.821 40.000 3.51 0.00 44.71 2.41
2322 2334 5.760743 TCGACCTTGTGTCAATCATTTGTAA 59.239 36.000 0.00 0.00 44.71 2.41
2323 2335 5.851177 CGACCTTGTGTCAATCATTTGTAAC 59.149 40.000 0.00 0.00 44.71 2.50
2324 2336 6.293407 CGACCTTGTGTCAATCATTTGTAACT 60.293 38.462 0.00 0.00 44.71 2.24
2325 2337 6.738114 ACCTTGTGTCAATCATTTGTAACTG 58.262 36.000 0.00 0.00 34.32 3.16
2326 2338 6.545666 ACCTTGTGTCAATCATTTGTAACTGA 59.454 34.615 0.00 0.00 34.32 3.41
2327 2339 6.857964 CCTTGTGTCAATCATTTGTAACTGAC 59.142 38.462 0.00 0.00 34.32 3.51
2328 2340 6.934048 TGTGTCAATCATTTGTAACTGACA 57.066 33.333 0.00 0.00 40.49 3.58
2329 2341 7.509141 TGTGTCAATCATTTGTAACTGACAT 57.491 32.000 6.04 0.00 43.46 3.06
2330 2342 7.939782 TGTGTCAATCATTTGTAACTGACATT 58.060 30.769 6.04 0.00 43.46 2.71
2331 2343 8.075574 TGTGTCAATCATTTGTAACTGACATTC 58.924 33.333 6.04 0.00 43.46 2.67
2332 2344 8.292448 GTGTCAATCATTTGTAACTGACATTCT 58.708 33.333 6.04 0.00 43.46 2.40
2333 2345 8.849168 TGTCAATCATTTGTAACTGACATTCTT 58.151 29.630 0.00 0.00 38.52 2.52
2334 2346 9.683069 GTCAATCATTTGTAACTGACATTCTTT 57.317 29.630 0.00 0.00 38.07 2.52
2335 2347 9.897744 TCAATCATTTGTAACTGACATTCTTTC 57.102 29.630 0.00 0.00 38.07 2.62
2336 2348 9.903682 CAATCATTTGTAACTGACATTCTTTCT 57.096 29.630 0.00 0.00 38.07 2.52
2343 2355 9.787532 TTGTAACTGACATTCTTTCTTTTTCAG 57.212 29.630 0.00 0.00 38.07 3.02
2344 2356 8.956426 TGTAACTGACATTCTTTCTTTTTCAGT 58.044 29.630 0.00 0.00 43.07 3.41
2347 2359 8.693542 ACTGACATTCTTTCTTTTTCAGTTTG 57.306 30.769 0.00 0.00 39.27 2.93
2348 2360 8.306761 ACTGACATTCTTTCTTTTTCAGTTTGT 58.693 29.630 0.00 0.00 39.27 2.83
2349 2361 9.787532 CTGACATTCTTTCTTTTTCAGTTTGTA 57.212 29.630 0.00 0.00 0.00 2.41
2360 2372 9.781834 TCTTTTTCAGTTTGTATTACACAACTG 57.218 29.630 25.91 25.91 46.80 3.16
2361 2373 9.567848 CTTTTTCAGTTTGTATTACACAACTGT 57.432 29.630 27.83 11.11 46.80 3.55
2362 2374 8.903570 TTTTCAGTTTGTATTACACAACTGTG 57.096 30.769 27.83 8.30 46.80 3.66
2363 2375 7.851387 TTCAGTTTGTATTACACAACTGTGA 57.149 32.000 27.83 21.56 46.80 3.58
2364 2376 8.445275 TTCAGTTTGTATTACACAACTGTGAT 57.555 30.769 27.83 3.39 46.80 3.06
2365 2377 7.860613 TCAGTTTGTATTACACAACTGTGATG 58.139 34.615 27.83 16.68 46.80 3.07
2366 2378 6.578545 CAGTTTGTATTACACAACTGTGATGC 59.421 38.462 24.84 5.02 46.80 3.91
2367 2379 6.262049 AGTTTGTATTACACAACTGTGATGCA 59.738 34.615 16.52 7.39 46.80 3.96
2368 2380 6.359617 GTTTGTATTACACAACTGTGATGCAC 59.640 38.462 16.52 8.97 46.80 4.57
2369 2381 6.782684 TTTGTATTACACAACTGTGATGCACG 60.783 38.462 16.52 0.00 46.80 5.34
2370 2382 8.847644 TTTGTATTACACAACTGTGATGCACGA 61.848 37.037 16.52 6.17 46.80 4.35
2373 2385 1.662517 ACAACTGTGATGCACGAACA 58.337 45.000 0.00 0.00 37.14 3.18
2374 2386 2.221169 ACAACTGTGATGCACGAACAT 58.779 42.857 0.00 0.00 37.14 2.71
2375 2387 2.618241 ACAACTGTGATGCACGAACATT 59.382 40.909 0.00 0.00 37.14 2.71
2376 2388 3.812609 ACAACTGTGATGCACGAACATTA 59.187 39.130 0.00 0.00 37.14 1.90
2377 2389 4.151070 CAACTGTGATGCACGAACATTAC 58.849 43.478 9.30 9.30 37.14 1.89
2378 2390 3.664107 ACTGTGATGCACGAACATTACT 58.336 40.909 14.63 0.00 37.42 2.24
2379 2391 4.065088 ACTGTGATGCACGAACATTACTT 58.935 39.130 14.63 3.92 37.42 2.24
2380 2392 4.083855 ACTGTGATGCACGAACATTACTTG 60.084 41.667 14.63 11.10 37.42 3.16
2381 2393 3.812609 TGTGATGCACGAACATTACTTGT 59.187 39.130 14.63 0.00 37.42 3.16
2382 2394 4.274705 TGTGATGCACGAACATTACTTGTT 59.725 37.500 14.63 0.00 40.64 2.83
2383 2395 5.220951 TGTGATGCACGAACATTACTTGTTT 60.221 36.000 14.63 0.00 40.37 2.83
2384 2396 6.017852 TGTGATGCACGAACATTACTTGTTTA 60.018 34.615 14.63 0.00 40.37 2.01
2385 2397 7.780917 TGTGATGCACGAACATTACTTGTTTAG 60.781 37.037 14.63 0.00 40.37 1.85
2397 2409 6.939551 TTACTTGTTTAGTAACTGCTAGCG 57.060 37.500 10.77 7.61 42.89 4.26
2398 2410 5.130292 ACTTGTTTAGTAACTGCTAGCGA 57.870 39.130 10.77 0.00 34.56 4.93
2399 2411 5.162075 ACTTGTTTAGTAACTGCTAGCGAG 58.838 41.667 10.77 11.05 34.56 5.03
2400 2412 4.106029 TGTTTAGTAACTGCTAGCGAGG 57.894 45.455 10.77 5.45 35.24 4.63
2401 2413 3.760151 TGTTTAGTAACTGCTAGCGAGGA 59.240 43.478 10.77 0.00 35.24 3.71
2402 2414 4.219070 TGTTTAGTAACTGCTAGCGAGGAA 59.781 41.667 10.77 0.00 35.24 3.36
2403 2415 5.105473 TGTTTAGTAACTGCTAGCGAGGAAT 60.105 40.000 10.77 3.95 35.24 3.01
2404 2416 3.444703 AGTAACTGCTAGCGAGGAATG 57.555 47.619 10.77 0.00 0.00 2.67
2405 2417 2.761208 AGTAACTGCTAGCGAGGAATGT 59.239 45.455 10.77 0.00 0.00 2.71
2406 2418 2.770164 AACTGCTAGCGAGGAATGTT 57.230 45.000 10.77 3.72 0.00 2.71
2407 2419 2.770164 ACTGCTAGCGAGGAATGTTT 57.230 45.000 10.77 0.00 0.00 2.83
2408 2420 2.350522 ACTGCTAGCGAGGAATGTTTG 58.649 47.619 10.77 0.00 0.00 2.93
2409 2421 2.028112 ACTGCTAGCGAGGAATGTTTGA 60.028 45.455 10.77 0.00 0.00 2.69
2410 2422 3.002791 CTGCTAGCGAGGAATGTTTGAA 58.997 45.455 10.77 0.00 0.00 2.69
2411 2423 3.002791 TGCTAGCGAGGAATGTTTGAAG 58.997 45.455 10.77 0.00 0.00 3.02
2412 2424 2.223135 GCTAGCGAGGAATGTTTGAAGC 60.223 50.000 0.00 0.00 0.00 3.86
2413 2425 2.191128 AGCGAGGAATGTTTGAAGCT 57.809 45.000 0.00 0.00 0.00 3.74
2414 2426 2.508526 AGCGAGGAATGTTTGAAGCTT 58.491 42.857 0.00 0.00 0.00 3.74
2415 2427 2.887152 AGCGAGGAATGTTTGAAGCTTT 59.113 40.909 0.00 0.00 0.00 3.51
2416 2428 3.057946 AGCGAGGAATGTTTGAAGCTTTC 60.058 43.478 0.00 0.13 0.00 2.62
2417 2429 3.057946 GCGAGGAATGTTTGAAGCTTTCT 60.058 43.478 0.00 0.00 0.00 2.52
2418 2430 4.470462 CGAGGAATGTTTGAAGCTTTCTG 58.530 43.478 0.00 0.00 0.00 3.02
2419 2431 4.214119 CGAGGAATGTTTGAAGCTTTCTGA 59.786 41.667 0.00 0.00 0.00 3.27
2420 2432 5.277974 CGAGGAATGTTTGAAGCTTTCTGAA 60.278 40.000 0.00 0.00 0.00 3.02
2421 2433 5.836347 AGGAATGTTTGAAGCTTTCTGAAC 58.164 37.500 0.00 4.49 0.00 3.18
2422 2434 5.595952 AGGAATGTTTGAAGCTTTCTGAACT 59.404 36.000 0.00 0.00 31.94 3.01
2423 2435 5.689068 GGAATGTTTGAAGCTTTCTGAACTG 59.311 40.000 0.00 0.00 31.94 3.16
2424 2436 6.455360 AATGTTTGAAGCTTTCTGAACTGA 57.545 33.333 0.00 0.00 31.94 3.41
2425 2437 5.895636 TGTTTGAAGCTTTCTGAACTGAA 57.104 34.783 0.00 0.00 31.94 3.02
2426 2438 5.640732 TGTTTGAAGCTTTCTGAACTGAAC 58.359 37.500 0.00 0.00 31.94 3.18
2427 2439 4.536364 TTGAAGCTTTCTGAACTGAACG 57.464 40.909 0.00 0.00 0.00 3.95
2428 2440 3.531538 TGAAGCTTTCTGAACTGAACGT 58.468 40.909 0.00 0.00 0.00 3.99
2429 2441 3.309682 TGAAGCTTTCTGAACTGAACGTG 59.690 43.478 0.00 0.00 0.00 4.49
2430 2442 1.599542 AGCTTTCTGAACTGAACGTGC 59.400 47.619 0.00 0.00 0.00 5.34
2431 2443 1.599542 GCTTTCTGAACTGAACGTGCT 59.400 47.619 0.00 0.00 0.00 4.40
2432 2444 2.348966 GCTTTCTGAACTGAACGTGCTC 60.349 50.000 0.00 0.00 0.00 4.26
2433 2445 2.595124 TTCTGAACTGAACGTGCTCA 57.405 45.000 0.00 0.00 0.00 4.26
2434 2446 2.820059 TCTGAACTGAACGTGCTCAT 57.180 45.000 0.00 0.00 0.00 2.90
2435 2447 2.677199 TCTGAACTGAACGTGCTCATC 58.323 47.619 0.00 0.00 0.00 2.92
2436 2448 1.728971 CTGAACTGAACGTGCTCATCC 59.271 52.381 0.00 0.00 0.00 3.51
2437 2449 1.344438 TGAACTGAACGTGCTCATCCT 59.656 47.619 0.00 0.00 0.00 3.24
2438 2450 2.224281 TGAACTGAACGTGCTCATCCTT 60.224 45.455 0.00 0.00 0.00 3.36
2439 2451 2.550830 ACTGAACGTGCTCATCCTTT 57.449 45.000 0.00 0.00 0.00 3.11
2440 2452 2.146342 ACTGAACGTGCTCATCCTTTG 58.854 47.619 0.00 0.00 0.00 2.77
2441 2453 2.146342 CTGAACGTGCTCATCCTTTGT 58.854 47.619 0.00 0.00 0.00 2.83
2442 2454 2.549754 CTGAACGTGCTCATCCTTTGTT 59.450 45.455 0.00 0.00 0.00 2.83
2443 2455 2.548057 TGAACGTGCTCATCCTTTGTTC 59.452 45.455 0.00 0.00 35.88 3.18
2444 2456 2.254546 ACGTGCTCATCCTTTGTTCA 57.745 45.000 0.00 0.00 0.00 3.18
2445 2457 2.783135 ACGTGCTCATCCTTTGTTCAT 58.217 42.857 0.00 0.00 0.00 2.57
2446 2458 3.149196 ACGTGCTCATCCTTTGTTCATT 58.851 40.909 0.00 0.00 0.00 2.57
2447 2459 4.323417 ACGTGCTCATCCTTTGTTCATTA 58.677 39.130 0.00 0.00 0.00 1.90
2448 2460 4.943705 ACGTGCTCATCCTTTGTTCATTAT 59.056 37.500 0.00 0.00 0.00 1.28
2449 2461 5.415701 ACGTGCTCATCCTTTGTTCATTATT 59.584 36.000 0.00 0.00 0.00 1.40
2450 2462 6.071952 ACGTGCTCATCCTTTGTTCATTATTT 60.072 34.615 0.00 0.00 0.00 1.40
2451 2463 6.470235 CGTGCTCATCCTTTGTTCATTATTTC 59.530 38.462 0.00 0.00 0.00 2.17
2452 2464 7.542025 GTGCTCATCCTTTGTTCATTATTTCT 58.458 34.615 0.00 0.00 0.00 2.52
2453 2465 7.487189 GTGCTCATCCTTTGTTCATTATTTCTG 59.513 37.037 0.00 0.00 0.00 3.02
2454 2466 7.177216 TGCTCATCCTTTGTTCATTATTTCTGT 59.823 33.333 0.00 0.00 0.00 3.41
2455 2467 8.031277 GCTCATCCTTTGTTCATTATTTCTGTT 58.969 33.333 0.00 0.00 0.00 3.16
2461 2473 9.793252 CCTTTGTTCATTATTTCTGTTATCAGG 57.207 33.333 1.00 0.00 41.59 3.86
2465 2477 9.295825 TGTTCATTATTTCTGTTATCAGGTTGT 57.704 29.630 1.00 0.00 41.59 3.32
2469 2481 9.357652 CATTATTTCTGTTATCAGGTTGTTTGG 57.642 33.333 1.00 0.00 41.59 3.28
2470 2482 8.698973 TTATTTCTGTTATCAGGTTGTTTGGA 57.301 30.769 1.00 0.00 41.59 3.53
2471 2483 7.781324 ATTTCTGTTATCAGGTTGTTTGGAT 57.219 32.000 1.00 0.00 41.59 3.41
2472 2484 6.573664 TTCTGTTATCAGGTTGTTTGGATG 57.426 37.500 1.00 0.00 41.59 3.51
2473 2485 5.875224 TCTGTTATCAGGTTGTTTGGATGA 58.125 37.500 1.00 0.00 41.59 2.92
2474 2486 6.303054 TCTGTTATCAGGTTGTTTGGATGAA 58.697 36.000 1.00 0.00 41.59 2.57
2475 2487 6.430925 TCTGTTATCAGGTTGTTTGGATGAAG 59.569 38.462 1.00 0.00 41.59 3.02
2476 2488 5.476599 TGTTATCAGGTTGTTTGGATGAAGG 59.523 40.000 0.00 0.00 0.00 3.46
2477 2489 3.874383 TCAGGTTGTTTGGATGAAGGA 57.126 42.857 0.00 0.00 0.00 3.36
2478 2490 4.177537 TCAGGTTGTTTGGATGAAGGAA 57.822 40.909 0.00 0.00 0.00 3.36
2479 2491 4.739793 TCAGGTTGTTTGGATGAAGGAAT 58.260 39.130 0.00 0.00 0.00 3.01
2480 2492 5.147032 TCAGGTTGTTTGGATGAAGGAATT 58.853 37.500 0.00 0.00 0.00 2.17
2481 2493 5.243730 TCAGGTTGTTTGGATGAAGGAATTC 59.756 40.000 0.00 0.00 0.00 2.17
2482 2494 4.528206 AGGTTGTTTGGATGAAGGAATTCC 59.472 41.667 17.31 17.31 0.00 3.01
2483 2495 4.485163 GTTGTTTGGATGAAGGAATTCCG 58.515 43.478 18.82 0.00 42.08 4.30
2484 2496 4.027674 TGTTTGGATGAAGGAATTCCGA 57.972 40.909 18.82 7.55 42.08 4.55
2485 2497 4.402829 TGTTTGGATGAAGGAATTCCGAA 58.597 39.130 18.82 8.89 42.08 4.30
2486 2498 4.733850 GTTTGGATGAAGGAATTCCGAAC 58.266 43.478 18.82 13.84 43.27 3.95
2487 2499 2.999331 TGGATGAAGGAATTCCGAACC 58.001 47.619 18.82 17.36 42.08 3.62
2488 2500 2.576191 TGGATGAAGGAATTCCGAACCT 59.424 45.455 18.82 7.35 42.08 3.50
2489 2501 3.010138 TGGATGAAGGAATTCCGAACCTT 59.990 43.478 18.82 7.23 45.16 3.50
2490 2502 4.017126 GGATGAAGGAATTCCGAACCTTT 58.983 43.478 18.82 6.48 42.98 3.11
2491 2503 4.142381 GGATGAAGGAATTCCGAACCTTTG 60.142 45.833 18.82 0.00 42.98 2.77
2492 2504 4.093472 TGAAGGAATTCCGAACCTTTGA 57.907 40.909 18.82 0.00 42.98 2.69
2493 2505 4.662278 TGAAGGAATTCCGAACCTTTGAT 58.338 39.130 18.82 0.00 42.98 2.57
2494 2506 4.458989 TGAAGGAATTCCGAACCTTTGATG 59.541 41.667 18.82 0.00 42.98 3.07
2495 2507 4.301072 AGGAATTCCGAACCTTTGATGA 57.699 40.909 18.82 0.00 42.08 2.92
2496 2508 4.010349 AGGAATTCCGAACCTTTGATGAC 58.990 43.478 18.82 0.00 42.08 3.06
2497 2509 3.756434 GGAATTCCGAACCTTTGATGACA 59.244 43.478 9.17 0.00 0.00 3.58
2498 2510 4.217550 GGAATTCCGAACCTTTGATGACAA 59.782 41.667 9.17 0.00 0.00 3.18
2499 2511 5.105756 GGAATTCCGAACCTTTGATGACAAT 60.106 40.000 9.17 0.00 35.85 2.71
2500 2512 5.982890 ATTCCGAACCTTTGATGACAATT 57.017 34.783 0.00 0.00 35.85 2.32
2501 2513 5.371115 TTCCGAACCTTTGATGACAATTC 57.629 39.130 0.00 0.00 35.85 2.17
2502 2514 3.756434 TCCGAACCTTTGATGACAATTCC 59.244 43.478 0.00 0.00 35.85 3.01
2503 2515 3.505680 CCGAACCTTTGATGACAATTCCA 59.494 43.478 0.00 0.00 35.85 3.53
2504 2516 4.379813 CCGAACCTTTGATGACAATTCCAG 60.380 45.833 0.00 0.00 35.85 3.86
2505 2517 4.488879 GAACCTTTGATGACAATTCCAGC 58.511 43.478 0.00 0.00 35.85 4.85
2506 2518 3.499338 ACCTTTGATGACAATTCCAGCA 58.501 40.909 0.00 0.00 35.85 4.41
2507 2519 3.256631 ACCTTTGATGACAATTCCAGCAC 59.743 43.478 0.00 0.00 35.85 4.40
2508 2520 3.367703 CCTTTGATGACAATTCCAGCACC 60.368 47.826 0.00 0.00 35.85 5.01
2509 2521 2.583024 TGATGACAATTCCAGCACCA 57.417 45.000 0.00 0.00 0.00 4.17
2510 2522 3.090210 TGATGACAATTCCAGCACCAT 57.910 42.857 0.00 0.00 0.00 3.55
2511 2523 3.433343 TGATGACAATTCCAGCACCATT 58.567 40.909 0.00 0.00 0.00 3.16
2512 2524 4.598022 TGATGACAATTCCAGCACCATTA 58.402 39.130 0.00 0.00 0.00 1.90
2513 2525 5.015515 TGATGACAATTCCAGCACCATTAA 58.984 37.500 0.00 0.00 0.00 1.40
2514 2526 5.657745 TGATGACAATTCCAGCACCATTAAT 59.342 36.000 0.00 0.00 0.00 1.40
2515 2527 5.327616 TGACAATTCCAGCACCATTAATG 57.672 39.130 8.58 8.58 0.00 1.90
2516 2528 4.771577 TGACAATTCCAGCACCATTAATGT 59.228 37.500 14.25 0.18 0.00 2.71
2517 2529 5.245751 TGACAATTCCAGCACCATTAATGTT 59.754 36.000 14.25 0.00 0.00 2.71
2518 2530 5.481105 ACAATTCCAGCACCATTAATGTTG 58.519 37.500 14.25 11.41 0.00 3.33
2519 2531 5.245751 ACAATTCCAGCACCATTAATGTTGA 59.754 36.000 16.39 0.00 30.46 3.18
2520 2532 6.070653 ACAATTCCAGCACCATTAATGTTGAT 60.071 34.615 16.39 7.56 30.46 2.57
2521 2533 7.123997 ACAATTCCAGCACCATTAATGTTGATA 59.876 33.333 16.39 0.00 30.46 2.15
2522 2534 6.449635 TTCCAGCACCATTAATGTTGATAC 57.550 37.500 16.39 0.00 30.46 2.24
2523 2535 5.754782 TCCAGCACCATTAATGTTGATACT 58.245 37.500 16.39 2.00 30.46 2.12
2524 2536 5.589855 TCCAGCACCATTAATGTTGATACTG 59.410 40.000 16.39 12.83 30.46 2.74
2525 2537 5.221106 CCAGCACCATTAATGTTGATACTGG 60.221 44.000 16.39 17.05 34.42 4.00
2526 2538 5.357878 CAGCACCATTAATGTTGATACTGGT 59.642 40.000 16.39 1.61 36.93 4.00
2528 2540 6.757897 CACCATTAATGTTGATACTGGTGT 57.242 37.500 14.25 0.00 43.60 4.16
2529 2541 7.156876 CACCATTAATGTTGATACTGGTGTT 57.843 36.000 14.25 0.00 43.60 3.32
2530 2542 8.275015 CACCATTAATGTTGATACTGGTGTTA 57.725 34.615 14.25 0.00 43.60 2.41
2531 2543 8.735315 CACCATTAATGTTGATACTGGTGTTAA 58.265 33.333 14.25 0.00 43.60 2.01
2532 2544 8.736244 ACCATTAATGTTGATACTGGTGTTAAC 58.264 33.333 14.25 0.00 35.64 2.01
2533 2545 8.735315 CCATTAATGTTGATACTGGTGTTAACA 58.265 33.333 14.25 3.59 32.34 2.41
2536 2548 9.953697 TTAATGTTGATACTGGTGTTAACAAAC 57.046 29.630 10.51 8.99 31.93 2.93
2537 2549 7.575414 ATGTTGATACTGGTGTTAACAAACA 57.425 32.000 10.51 14.20 31.93 2.83
2538 2550 7.022055 TGTTGATACTGGTGTTAACAAACAG 57.978 36.000 27.24 27.24 38.38 3.16
2545 2557 3.880610 GGTGTTAACAAACAGCTTACGG 58.119 45.455 10.51 0.00 44.99 4.02
2546 2558 3.560896 GGTGTTAACAAACAGCTTACGGA 59.439 43.478 10.51 0.00 44.99 4.69
2547 2559 4.319261 GGTGTTAACAAACAGCTTACGGAG 60.319 45.833 10.51 0.00 44.99 4.63
2548 2560 4.508861 GTGTTAACAAACAGCTTACGGAGA 59.491 41.667 10.51 0.00 32.64 3.71
2549 2561 5.178809 GTGTTAACAAACAGCTTACGGAGAT 59.821 40.000 10.51 0.00 32.64 2.75
2551 2563 3.678056 ACAAACAGCTTACGGAGATGA 57.322 42.857 12.35 0.00 44.56 2.92
2552 2564 4.207891 ACAAACAGCTTACGGAGATGAT 57.792 40.909 12.35 0.00 44.56 2.45
2553 2565 4.184629 ACAAACAGCTTACGGAGATGATC 58.815 43.478 12.35 0.00 44.56 2.92
2554 2566 4.183865 CAAACAGCTTACGGAGATGATCA 58.816 43.478 12.35 0.00 44.56 2.92
2555 2567 4.679373 AACAGCTTACGGAGATGATCAT 57.321 40.909 8.25 8.25 44.56 2.45
2556 2568 3.987547 ACAGCTTACGGAGATGATCATG 58.012 45.455 14.30 0.59 44.56 3.07
2557 2569 3.638627 ACAGCTTACGGAGATGATCATGA 59.361 43.478 14.30 0.00 44.56 3.07
2558 2570 4.100035 ACAGCTTACGGAGATGATCATGAA 59.900 41.667 14.30 0.00 44.56 2.57
2559 2571 5.052481 CAGCTTACGGAGATGATCATGAAA 58.948 41.667 14.30 0.00 44.56 2.69
2560 2572 5.699915 CAGCTTACGGAGATGATCATGAAAT 59.300 40.000 14.30 0.00 44.56 2.17
2561 2573 5.931146 AGCTTACGGAGATGATCATGAAATC 59.069 40.000 14.30 6.57 0.00 2.17
2562 2574 5.698089 GCTTACGGAGATGATCATGAAATCA 59.302 40.000 14.30 11.73 39.85 2.57
2563 2575 6.347240 GCTTACGGAGATGATCATGAAATCAC 60.347 42.308 14.30 14.09 38.43 3.06
2564 2576 4.384056 ACGGAGATGATCATGAAATCACC 58.616 43.478 14.30 19.69 38.43 4.02
2565 2577 3.750130 CGGAGATGATCATGAAATCACCC 59.250 47.826 14.30 18.63 38.43 4.61
2566 2578 3.750130 GGAGATGATCATGAAATCACCCG 59.250 47.826 14.30 0.00 38.43 5.28
2567 2579 4.503817 GGAGATGATCATGAAATCACCCGA 60.504 45.833 14.30 0.00 38.43 5.14
2568 2580 5.039920 AGATGATCATGAAATCACCCGAA 57.960 39.130 14.30 0.00 38.43 4.30
2569 2581 4.818546 AGATGATCATGAAATCACCCGAAC 59.181 41.667 14.30 0.00 38.43 3.95
2570 2582 3.278574 TGATCATGAAATCACCCGAACC 58.721 45.455 0.00 0.00 30.76 3.62
2571 2583 3.054434 TGATCATGAAATCACCCGAACCT 60.054 43.478 0.00 0.00 30.76 3.50
2572 2584 2.710377 TCATGAAATCACCCGAACCTG 58.290 47.619 0.00 0.00 0.00 4.00
2573 2585 1.745087 CATGAAATCACCCGAACCTGG 59.255 52.381 0.00 0.00 0.00 4.45
2588 2600 3.215671 CTGGGCAGGAGCTACTACT 57.784 57.895 0.00 0.00 41.70 2.57
2589 2601 1.490574 CTGGGCAGGAGCTACTACTT 58.509 55.000 0.00 0.00 41.70 2.24
2590 2602 1.137872 CTGGGCAGGAGCTACTACTTG 59.862 57.143 0.00 0.00 41.70 3.16
2591 2603 0.466124 GGGCAGGAGCTACTACTTGG 59.534 60.000 0.00 0.00 41.70 3.61
2592 2604 1.486211 GGCAGGAGCTACTACTTGGA 58.514 55.000 0.00 0.00 41.70 3.53
2593 2605 1.831736 GGCAGGAGCTACTACTTGGAA 59.168 52.381 0.00 0.00 41.70 3.53
2594 2606 2.236395 GGCAGGAGCTACTACTTGGAAA 59.764 50.000 0.00 0.00 41.70 3.13
2595 2607 3.263261 GCAGGAGCTACTACTTGGAAAC 58.737 50.000 0.00 0.00 37.91 2.78
2596 2608 3.863041 CAGGAGCTACTACTTGGAAACC 58.137 50.000 0.00 0.00 0.00 3.27
2597 2609 2.496470 AGGAGCTACTACTTGGAAACCG 59.504 50.000 0.00 0.00 0.00 4.44
2598 2610 2.418334 GGAGCTACTACTTGGAAACCGG 60.418 54.545 0.00 0.00 0.00 5.28
2599 2611 2.494870 GAGCTACTACTTGGAAACCGGA 59.505 50.000 9.46 0.00 0.00 5.14
2600 2612 2.901839 AGCTACTACTTGGAAACCGGAA 59.098 45.455 9.46 0.00 0.00 4.30
2601 2613 3.518303 AGCTACTACTTGGAAACCGGAAT 59.482 43.478 9.46 0.00 0.00 3.01
2602 2614 4.713321 AGCTACTACTTGGAAACCGGAATA 59.287 41.667 9.46 0.00 0.00 1.75
2603 2615 5.365895 AGCTACTACTTGGAAACCGGAATAT 59.634 40.000 9.46 0.00 0.00 1.28
2604 2616 6.552350 AGCTACTACTTGGAAACCGGAATATA 59.448 38.462 9.46 0.00 0.00 0.86
2605 2617 7.070322 AGCTACTACTTGGAAACCGGAATATAA 59.930 37.037 9.46 0.00 0.00 0.98
2606 2618 7.712205 GCTACTACTTGGAAACCGGAATATAAA 59.288 37.037 9.46 0.00 0.00 1.40
2607 2619 7.854557 ACTACTTGGAAACCGGAATATAAAC 57.145 36.000 9.46 0.00 0.00 2.01
2608 2620 6.825213 ACTACTTGGAAACCGGAATATAAACC 59.175 38.462 9.46 0.26 0.00 3.27
2609 2621 5.823312 ACTTGGAAACCGGAATATAAACCT 58.177 37.500 9.46 0.00 0.00 3.50
2610 2622 6.961042 ACTTGGAAACCGGAATATAAACCTA 58.039 36.000 9.46 0.00 0.00 3.08
2611 2623 7.580007 ACTTGGAAACCGGAATATAAACCTAT 58.420 34.615 9.46 0.00 0.00 2.57
2612 2624 8.716779 ACTTGGAAACCGGAATATAAACCTATA 58.283 33.333 9.46 0.00 0.00 1.31
2613 2625 9.563748 CTTGGAAACCGGAATATAAACCTATAA 57.436 33.333 9.46 0.00 0.00 0.98
2678 2690 8.635765 AGCTCCTTGTTTTCTTATATTGTTCA 57.364 30.769 0.00 0.00 0.00 3.18
2679 2691 8.515414 AGCTCCTTGTTTTCTTATATTGTTCAC 58.485 33.333 0.00 0.00 0.00 3.18
2680 2692 8.296713 GCTCCTTGTTTTCTTATATTGTTCACA 58.703 33.333 0.00 0.00 0.00 3.58
2683 2695 9.965824 CCTTGTTTTCTTATATTGTTCACAAGT 57.034 29.630 0.00 0.00 39.47 3.16
2689 2701 9.677567 TTTCTTATATTGTTCACAAGTTTGAGC 57.322 29.630 0.00 0.00 39.47 4.26
2690 2702 7.518161 TCTTATATTGTTCACAAGTTTGAGCG 58.482 34.615 0.00 0.00 39.47 5.03
2691 2703 2.187351 TTGTTCACAAGTTTGAGCGC 57.813 45.000 0.00 0.00 29.71 5.92
2692 2704 0.380378 TGTTCACAAGTTTGAGCGCC 59.620 50.000 2.29 0.00 29.71 6.53
2693 2705 0.380378 GTTCACAAGTTTGAGCGCCA 59.620 50.000 2.29 0.00 0.00 5.69
2694 2706 1.001378 GTTCACAAGTTTGAGCGCCAT 60.001 47.619 2.29 0.00 0.00 4.40
2695 2707 1.317613 TCACAAGTTTGAGCGCCATT 58.682 45.000 2.29 0.00 0.00 3.16
2696 2708 1.680735 TCACAAGTTTGAGCGCCATTT 59.319 42.857 2.29 0.00 0.00 2.32
2697 2709 2.100584 TCACAAGTTTGAGCGCCATTTT 59.899 40.909 2.29 0.00 0.00 1.82
2698 2710 2.865551 CACAAGTTTGAGCGCCATTTTT 59.134 40.909 2.29 0.00 0.00 1.94
2699 2711 3.060339 CACAAGTTTGAGCGCCATTTTTC 60.060 43.478 2.29 0.00 0.00 2.29
2700 2712 3.122297 CAAGTTTGAGCGCCATTTTTCA 58.878 40.909 2.29 0.00 0.00 2.69
2701 2713 3.665745 AGTTTGAGCGCCATTTTTCAT 57.334 38.095 2.29 0.00 0.00 2.57
2702 2714 3.319755 AGTTTGAGCGCCATTTTTCATG 58.680 40.909 2.29 0.00 0.00 3.07
2703 2715 3.059166 GTTTGAGCGCCATTTTTCATGT 58.941 40.909 2.29 0.00 0.00 3.21
2704 2716 3.383620 TTGAGCGCCATTTTTCATGTT 57.616 38.095 2.29 0.00 0.00 2.71
2705 2717 4.511617 TTGAGCGCCATTTTTCATGTTA 57.488 36.364 2.29 0.00 0.00 2.41
2706 2718 3.832276 TGAGCGCCATTTTTCATGTTAC 58.168 40.909 2.29 0.00 0.00 2.50
2707 2719 3.179048 GAGCGCCATTTTTCATGTTACC 58.821 45.455 2.29 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.267681 GACTAGGTGACACCGAGGCG 62.268 65.000 30.83 16.39 44.12 5.52
69 70 4.704833 GACCCAGGCAGCTGCGAA 62.705 66.667 31.19 0.00 43.26 4.70
149 150 2.603473 ACAGTGCCTCGGGTGCTA 60.603 61.111 0.00 0.00 0.00 3.49
158 159 2.113986 GCCCAAGTGACAGTGCCT 59.886 61.111 0.00 0.00 0.00 4.75
198 199 2.437281 AGAAGATGATGACCCAAGCGAT 59.563 45.455 0.00 0.00 0.00 4.58
203 204 1.918262 AGCCAGAAGATGATGACCCAA 59.082 47.619 0.00 0.00 0.00 4.12
295 305 2.203640 AGGCGGAGGTGACAGTGA 60.204 61.111 0.00 0.00 0.00 3.41
299 309 2.377628 GACAACAGGCGGAGGTGACA 62.378 60.000 0.00 0.00 0.00 3.58
498 508 2.772568 TGTTTCGTTGAAGTGCATGG 57.227 45.000 0.00 0.00 0.00 3.66
570 580 2.341846 TCTTCACCTTGAACACCCAC 57.658 50.000 0.00 0.00 32.21 4.61
576 586 4.036734 TCAGCATGTTTCTTCACCTTGAAC 59.963 41.667 0.00 0.00 37.40 3.18
813 823 3.237268 TCAACAAAACCAGGTGGCTAT 57.763 42.857 0.00 0.00 39.32 2.97
963 973 7.148474 GGTCGCTGAAAGATAAACAAAGATGTA 60.148 37.037 0.00 0.00 35.17 2.29
966 976 5.705441 TGGTCGCTGAAAGATAAACAAAGAT 59.295 36.000 0.00 0.00 34.07 2.40
990 1000 5.273208 ACCAGAATGTACATAGTCACCTCT 58.727 41.667 9.21 3.45 0.00 3.69
1065 1075 2.119495 ACACCAAGAGAGGACACAAGT 58.881 47.619 0.00 0.00 0.00 3.16
1085 1095 5.241506 CCAAGATCCTTAACAGCAAACTCAA 59.758 40.000 0.00 0.00 0.00 3.02
1113 1123 3.382546 CCAGACCCAGAAAATAATGCAGG 59.617 47.826 0.00 0.00 0.00 4.85
1158 1168 8.189119 AGTACTTCTTCTGAGAAAGAGTCAAT 57.811 34.615 11.81 0.70 41.19 2.57
1245 1255 0.852777 CGGTCAGTTTGTCTGTGACG 59.147 55.000 0.00 0.00 43.97 4.35
1496 1506 5.292834 TCAGCATAAGAAAAAGCAGAGATCG 59.707 40.000 0.00 0.00 0.00 3.69
1506 1516 3.507233 CAGCCCAGTCAGCATAAGAAAAA 59.493 43.478 0.00 0.00 0.00 1.94
1513 1523 1.123077 CTACCAGCCCAGTCAGCATA 58.877 55.000 0.00 0.00 0.00 3.14
1518 1528 0.904865 CAGGACTACCAGCCCAGTCA 60.905 60.000 4.32 0.00 42.45 3.41
1729 1741 5.185635 CCAATGTTATCACACCAAAGGACAT 59.814 40.000 0.00 0.00 35.03 3.06
1799 1811 5.392767 AGTGATAGTCAACTTCGATGTGT 57.607 39.130 4.52 0.00 0.00 3.72
1895 1907 3.005791 GCAAGGGCAAGTGTTTAGTGAAT 59.994 43.478 0.00 0.00 40.72 2.57
1906 1918 1.413812 CAAAAGAAGGCAAGGGCAAGT 59.586 47.619 0.00 0.00 43.71 3.16
1963 1975 6.782988 CCTCCCTCAATCTTAACTATGTCCTA 59.217 42.308 0.00 0.00 0.00 2.94
2027 2039 6.267471 AGGGAACGATACAAATACCGGTTATA 59.733 38.462 15.04 0.00 0.00 0.98
2124 2136 8.930846 ACAGTACGAGTATATGGGTTAGTAAT 57.069 34.615 0.00 0.00 0.00 1.89
2127 2139 8.930846 AATACAGTACGAGTATATGGGTTAGT 57.069 34.615 12.44 0.00 32.19 2.24
2128 2140 9.837525 GAAATACAGTACGAGTATATGGGTTAG 57.162 37.037 12.44 0.00 32.19 2.34
2129 2141 9.353431 TGAAATACAGTACGAGTATATGGGTTA 57.647 33.333 12.44 0.00 32.19 2.85
2130 2142 8.241497 TGAAATACAGTACGAGTATATGGGTT 57.759 34.615 12.44 5.30 32.19 4.11
2131 2143 7.828508 TGAAATACAGTACGAGTATATGGGT 57.171 36.000 12.44 0.00 32.19 4.51
2132 2144 7.974501 GGATGAAATACAGTACGAGTATATGGG 59.025 40.741 12.44 0.00 32.19 4.00
2133 2145 8.740906 AGGATGAAATACAGTACGAGTATATGG 58.259 37.037 12.44 0.00 32.19 2.74
2136 2148 9.128404 ACAAGGATGAAATACAGTACGAGTATA 57.872 33.333 12.44 1.43 32.19 1.47
2137 2149 8.008513 ACAAGGATGAAATACAGTACGAGTAT 57.991 34.615 7.84 7.84 33.79 2.12
2138 2150 7.338703 AGACAAGGATGAAATACAGTACGAGTA 59.661 37.037 0.00 4.12 0.00 2.59
2139 2151 6.153000 AGACAAGGATGAAATACAGTACGAGT 59.847 38.462 0.00 0.00 0.00 4.18
2140 2152 6.565234 AGACAAGGATGAAATACAGTACGAG 58.435 40.000 0.00 0.00 0.00 4.18
2141 2153 6.405508 GGAGACAAGGATGAAATACAGTACGA 60.406 42.308 0.00 0.00 0.00 3.43
2142 2154 5.749109 GGAGACAAGGATGAAATACAGTACG 59.251 44.000 0.00 0.00 0.00 3.67
2143 2155 6.640518 TGGAGACAAGGATGAAATACAGTAC 58.359 40.000 0.00 0.00 37.44 2.73
2144 2156 6.667848 TCTGGAGACAAGGATGAAATACAGTA 59.332 38.462 0.00 0.00 42.06 2.74
2145 2157 5.485353 TCTGGAGACAAGGATGAAATACAGT 59.515 40.000 0.00 0.00 42.06 3.55
2146 2158 5.982356 TCTGGAGACAAGGATGAAATACAG 58.018 41.667 0.00 0.00 42.06 2.74
2147 2159 5.627735 GCTCTGGAGACAAGGATGAAATACA 60.628 44.000 1.35 0.00 42.06 2.29
2148 2160 4.813697 GCTCTGGAGACAAGGATGAAATAC 59.186 45.833 1.35 0.00 42.06 1.89
2149 2161 4.442052 CGCTCTGGAGACAAGGATGAAATA 60.442 45.833 1.35 0.00 42.06 1.40
2150 2162 3.681034 CGCTCTGGAGACAAGGATGAAAT 60.681 47.826 1.35 0.00 42.06 2.17
2151 2163 2.354103 CGCTCTGGAGACAAGGATGAAA 60.354 50.000 1.35 0.00 42.06 2.69
2152 2164 1.205655 CGCTCTGGAGACAAGGATGAA 59.794 52.381 1.35 0.00 42.06 2.57
2153 2165 0.820226 CGCTCTGGAGACAAGGATGA 59.180 55.000 1.35 0.00 42.06 2.92
2154 2166 0.534412 ACGCTCTGGAGACAAGGATG 59.466 55.000 1.35 0.00 42.06 3.51
2155 2167 0.534412 CACGCTCTGGAGACAAGGAT 59.466 55.000 1.35 0.00 42.06 3.24
2156 2168 0.827925 ACACGCTCTGGAGACAAGGA 60.828 55.000 1.35 0.00 42.06 3.36
2157 2169 0.668706 CACACGCTCTGGAGACAAGG 60.669 60.000 1.35 0.00 42.06 3.61
2158 2170 0.668706 CCACACGCTCTGGAGACAAG 60.669 60.000 1.35 0.00 42.06 3.16
2159 2171 1.367471 CCACACGCTCTGGAGACAA 59.633 57.895 1.35 0.00 42.06 3.18
2160 2172 2.574018 CCCACACGCTCTGGAGACA 61.574 63.158 1.35 0.00 39.59 3.41
2161 2173 2.262915 CCCACACGCTCTGGAGAC 59.737 66.667 1.35 0.00 0.00 3.36
2162 2174 3.695606 GCCCACACGCTCTGGAGA 61.696 66.667 1.35 0.00 0.00 3.71
2163 2175 3.535629 TTGCCCACACGCTCTGGAG 62.536 63.158 0.00 0.00 0.00 3.86
2164 2176 3.113514 TTTGCCCACACGCTCTGGA 62.114 57.895 0.00 0.00 0.00 3.86
2165 2177 2.594303 TTTGCCCACACGCTCTGG 60.594 61.111 0.00 0.00 0.00 3.86
2166 2178 1.447317 AAGTTTGCCCACACGCTCTG 61.447 55.000 0.00 0.00 0.00 3.35
2167 2179 1.152963 AAGTTTGCCCACACGCTCT 60.153 52.632 0.00 0.00 0.00 4.09
2168 2180 1.282875 GAAGTTTGCCCACACGCTC 59.717 57.895 0.00 0.00 0.00 5.03
2169 2181 2.542907 CGAAGTTTGCCCACACGCT 61.543 57.895 0.00 0.00 0.00 5.07
2170 2182 2.051345 CGAAGTTTGCCCACACGC 60.051 61.111 0.00 0.00 0.00 5.34
2171 2183 1.225376 TAGCGAAGTTTGCCCACACG 61.225 55.000 11.66 0.00 0.00 4.49
2172 2184 0.237498 GTAGCGAAGTTTGCCCACAC 59.763 55.000 11.66 1.76 0.00 3.82
2173 2185 0.107831 AGTAGCGAAGTTTGCCCACA 59.892 50.000 11.66 0.00 0.00 4.17
2174 2186 1.069227 CAAGTAGCGAAGTTTGCCCAC 60.069 52.381 11.66 9.96 0.00 4.61
2175 2187 1.234821 CAAGTAGCGAAGTTTGCCCA 58.765 50.000 11.66 0.00 0.00 5.36
2176 2188 1.235724 ACAAGTAGCGAAGTTTGCCC 58.764 50.000 11.66 3.02 0.00 5.36
2177 2189 3.064931 AGTACAAGTAGCGAAGTTTGCC 58.935 45.455 11.66 0.00 0.00 4.52
2178 2190 5.163982 CCTTAGTACAAGTAGCGAAGTTTGC 60.164 44.000 7.03 7.03 0.00 3.68
2179 2191 6.154445 TCCTTAGTACAAGTAGCGAAGTTTG 58.846 40.000 0.00 0.00 0.00 2.93
2180 2192 6.336842 TCCTTAGTACAAGTAGCGAAGTTT 57.663 37.500 0.00 0.00 0.00 2.66
2181 2193 5.972107 TCCTTAGTACAAGTAGCGAAGTT 57.028 39.130 0.00 0.00 0.00 2.66
2182 2194 5.972107 TTCCTTAGTACAAGTAGCGAAGT 57.028 39.130 0.00 0.00 0.00 3.01
2183 2195 6.618811 TCTTTCCTTAGTACAAGTAGCGAAG 58.381 40.000 0.00 0.00 0.00 3.79
2184 2196 6.579666 TCTTTCCTTAGTACAAGTAGCGAA 57.420 37.500 0.00 0.00 0.00 4.70
2185 2197 6.579666 TTCTTTCCTTAGTACAAGTAGCGA 57.420 37.500 0.00 0.00 0.00 4.93
2186 2198 6.183359 CGTTTCTTTCCTTAGTACAAGTAGCG 60.183 42.308 0.00 0.00 0.00 4.26
2187 2199 6.644181 ACGTTTCTTTCCTTAGTACAAGTAGC 59.356 38.462 0.00 0.00 0.00 3.58
2188 2200 7.864379 TCACGTTTCTTTCCTTAGTACAAGTAG 59.136 37.037 0.00 0.00 0.00 2.57
2189 2201 7.715657 TCACGTTTCTTTCCTTAGTACAAGTA 58.284 34.615 0.00 0.00 0.00 2.24
2190 2202 6.576185 TCACGTTTCTTTCCTTAGTACAAGT 58.424 36.000 0.00 0.00 0.00 3.16
2191 2203 6.700520 ACTCACGTTTCTTTCCTTAGTACAAG 59.299 38.462 0.00 0.00 0.00 3.16
2192 2204 6.576185 ACTCACGTTTCTTTCCTTAGTACAA 58.424 36.000 0.00 0.00 0.00 2.41
2193 2205 6.040166 AGACTCACGTTTCTTTCCTTAGTACA 59.960 38.462 0.00 0.00 0.00 2.90
2194 2206 6.445475 AGACTCACGTTTCTTTCCTTAGTAC 58.555 40.000 0.00 0.00 0.00 2.73
2195 2207 6.645790 AGACTCACGTTTCTTTCCTTAGTA 57.354 37.500 0.00 0.00 0.00 1.82
2196 2208 5.532664 AGACTCACGTTTCTTTCCTTAGT 57.467 39.130 0.00 0.00 0.00 2.24
2197 2209 5.983720 TGAAGACTCACGTTTCTTTCCTTAG 59.016 40.000 5.53 0.00 32.04 2.18
2198 2210 5.909477 TGAAGACTCACGTTTCTTTCCTTA 58.091 37.500 5.53 0.00 32.04 2.69
2199 2211 4.766375 TGAAGACTCACGTTTCTTTCCTT 58.234 39.130 5.53 0.00 32.04 3.36
2200 2212 4.402056 TGAAGACTCACGTTTCTTTCCT 57.598 40.909 5.53 0.00 32.04 3.36
2201 2213 5.674933 AATGAAGACTCACGTTTCTTTCC 57.325 39.130 5.53 0.00 33.30 3.13
2202 2214 6.633234 GGAAAATGAAGACTCACGTTTCTTTC 59.367 38.462 5.53 4.88 38.18 2.62
2203 2215 6.318900 AGGAAAATGAAGACTCACGTTTCTTT 59.681 34.615 5.53 0.21 38.18 2.52
2204 2216 5.823045 AGGAAAATGAAGACTCACGTTTCTT 59.177 36.000 3.97 3.97 38.18 2.52
2205 2217 5.368989 AGGAAAATGAAGACTCACGTTTCT 58.631 37.500 10.55 0.00 38.18 2.52
2206 2218 5.674933 AGGAAAATGAAGACTCACGTTTC 57.325 39.130 0.00 0.00 37.78 2.78
2207 2219 5.008712 GGAAGGAAAATGAAGACTCACGTTT 59.991 40.000 0.00 0.00 33.30 3.60
2208 2220 4.515567 GGAAGGAAAATGAAGACTCACGTT 59.484 41.667 0.00 0.00 33.30 3.99
2209 2221 4.065789 GGAAGGAAAATGAAGACTCACGT 58.934 43.478 0.00 0.00 33.30 4.49
2210 2222 3.437049 GGGAAGGAAAATGAAGACTCACG 59.563 47.826 0.00 0.00 33.30 4.35
2211 2223 4.657013 AGGGAAGGAAAATGAAGACTCAC 58.343 43.478 0.00 0.00 33.30 3.51
2212 2224 5.073691 AGAAGGGAAGGAAAATGAAGACTCA 59.926 40.000 0.00 0.00 35.56 3.41
2213 2225 5.565509 AGAAGGGAAGGAAAATGAAGACTC 58.434 41.667 0.00 0.00 0.00 3.36
2214 2226 5.073691 TGAGAAGGGAAGGAAAATGAAGACT 59.926 40.000 0.00 0.00 0.00 3.24
2215 2227 5.316987 TGAGAAGGGAAGGAAAATGAAGAC 58.683 41.667 0.00 0.00 0.00 3.01
2216 2228 5.582950 TGAGAAGGGAAGGAAAATGAAGA 57.417 39.130 0.00 0.00 0.00 2.87
2217 2229 5.065731 CGATGAGAAGGGAAGGAAAATGAAG 59.934 44.000 0.00 0.00 0.00 3.02
2218 2230 4.943705 CGATGAGAAGGGAAGGAAAATGAA 59.056 41.667 0.00 0.00 0.00 2.57
2219 2231 4.019321 ACGATGAGAAGGGAAGGAAAATGA 60.019 41.667 0.00 0.00 0.00 2.57
2220 2232 4.265073 ACGATGAGAAGGGAAGGAAAATG 58.735 43.478 0.00 0.00 0.00 2.32
2221 2233 4.019321 TGACGATGAGAAGGGAAGGAAAAT 60.019 41.667 0.00 0.00 0.00 1.82
2222 2234 3.326588 TGACGATGAGAAGGGAAGGAAAA 59.673 43.478 0.00 0.00 0.00 2.29
2223 2235 2.903784 TGACGATGAGAAGGGAAGGAAA 59.096 45.455 0.00 0.00 0.00 3.13
2224 2236 2.233922 GTGACGATGAGAAGGGAAGGAA 59.766 50.000 0.00 0.00 0.00 3.36
2225 2237 1.825474 GTGACGATGAGAAGGGAAGGA 59.175 52.381 0.00 0.00 0.00 3.36
2226 2238 1.827969 AGTGACGATGAGAAGGGAAGG 59.172 52.381 0.00 0.00 0.00 3.46
2227 2239 2.886081 CAGTGACGATGAGAAGGGAAG 58.114 52.381 0.00 0.00 0.00 3.46
2228 2240 1.066858 GCAGTGACGATGAGAAGGGAA 60.067 52.381 0.00 0.00 0.00 3.97
2229 2241 0.532573 GCAGTGACGATGAGAAGGGA 59.467 55.000 0.00 0.00 0.00 4.20
2230 2242 0.534412 AGCAGTGACGATGAGAAGGG 59.466 55.000 0.00 0.00 0.00 3.95
2231 2243 2.094286 AGAAGCAGTGACGATGAGAAGG 60.094 50.000 0.00 0.00 0.00 3.46
2232 2244 3.229276 AGAAGCAGTGACGATGAGAAG 57.771 47.619 0.00 0.00 0.00 2.85
2233 2245 3.667497 AAGAAGCAGTGACGATGAGAA 57.333 42.857 0.00 0.00 0.00 2.87
2234 2246 4.202060 GGATAAGAAGCAGTGACGATGAGA 60.202 45.833 0.00 0.00 0.00 3.27
2235 2247 4.047822 GGATAAGAAGCAGTGACGATGAG 58.952 47.826 0.00 0.00 0.00 2.90
2236 2248 3.181475 GGGATAAGAAGCAGTGACGATGA 60.181 47.826 0.00 0.00 0.00 2.92
2237 2249 3.126831 GGGATAAGAAGCAGTGACGATG 58.873 50.000 0.00 0.00 0.00 3.84
2238 2250 3.034635 AGGGATAAGAAGCAGTGACGAT 58.965 45.455 0.00 0.00 0.00 3.73
2239 2251 2.457598 AGGGATAAGAAGCAGTGACGA 58.542 47.619 0.00 0.00 0.00 4.20
2240 2252 2.969628 AGGGATAAGAAGCAGTGACG 57.030 50.000 0.00 0.00 0.00 4.35
2241 2253 3.942115 GGAAAGGGATAAGAAGCAGTGAC 59.058 47.826 0.00 0.00 0.00 3.67
2242 2254 3.846588 AGGAAAGGGATAAGAAGCAGTGA 59.153 43.478 0.00 0.00 0.00 3.41
2243 2255 4.195416 GAGGAAAGGGATAAGAAGCAGTG 58.805 47.826 0.00 0.00 0.00 3.66
2244 2256 3.118592 CGAGGAAAGGGATAAGAAGCAGT 60.119 47.826 0.00 0.00 0.00 4.40
2245 2257 3.118592 ACGAGGAAAGGGATAAGAAGCAG 60.119 47.826 0.00 0.00 0.00 4.24
2246 2258 2.838202 ACGAGGAAAGGGATAAGAAGCA 59.162 45.455 0.00 0.00 0.00 3.91
2247 2259 3.545366 ACGAGGAAAGGGATAAGAAGC 57.455 47.619 0.00 0.00 0.00 3.86
2248 2260 5.051153 GCTTACGAGGAAAGGGATAAGAAG 58.949 45.833 0.00 0.00 0.00 2.85
2249 2261 4.715297 AGCTTACGAGGAAAGGGATAAGAA 59.285 41.667 0.00 0.00 0.00 2.52
2250 2262 4.287552 AGCTTACGAGGAAAGGGATAAGA 58.712 43.478 0.00 0.00 0.00 2.10
2251 2263 4.674281 AGCTTACGAGGAAAGGGATAAG 57.326 45.455 0.00 0.00 0.00 1.73
2252 2264 4.224370 ACAAGCTTACGAGGAAAGGGATAA 59.776 41.667 0.00 0.00 0.00 1.75
2253 2265 3.773119 ACAAGCTTACGAGGAAAGGGATA 59.227 43.478 0.00 0.00 0.00 2.59
2254 2266 2.572104 ACAAGCTTACGAGGAAAGGGAT 59.428 45.455 0.00 0.00 0.00 3.85
2255 2267 1.975680 ACAAGCTTACGAGGAAAGGGA 59.024 47.619 0.00 0.00 0.00 4.20
2256 2268 2.347731 GACAAGCTTACGAGGAAAGGG 58.652 52.381 0.00 0.00 0.00 3.95
2257 2269 1.993370 CGACAAGCTTACGAGGAAAGG 59.007 52.381 16.65 0.00 0.00 3.11
2258 2270 1.390463 GCGACAAGCTTACGAGGAAAG 59.610 52.381 23.00 1.86 44.04 2.62
2259 2271 1.425412 GCGACAAGCTTACGAGGAAA 58.575 50.000 23.00 0.00 44.04 3.13
2260 2272 3.117589 GCGACAAGCTTACGAGGAA 57.882 52.632 23.00 0.00 44.04 3.36
2261 2273 4.883026 GCGACAAGCTTACGAGGA 57.117 55.556 23.00 0.00 44.04 3.71
2273 2285 0.871722 CTTGGAACGATTTGGCGACA 59.128 50.000 0.00 0.00 39.83 4.35
2274 2286 0.872388 ACTTGGAACGATTTGGCGAC 59.128 50.000 0.00 0.00 34.83 5.19
2275 2287 2.459060 TACTTGGAACGATTTGGCGA 57.541 45.000 0.00 0.00 34.83 5.54
2276 2288 3.119990 ACAATACTTGGAACGATTTGGCG 60.120 43.478 0.00 0.00 34.12 5.69
2277 2289 4.412207 GACAATACTTGGAACGATTTGGC 58.588 43.478 0.00 0.00 34.12 4.52
2278 2290 4.390603 TCGACAATACTTGGAACGATTTGG 59.609 41.667 0.00 0.00 33.08 3.28
2279 2291 5.313623 GTCGACAATACTTGGAACGATTTG 58.686 41.667 11.55 0.00 37.26 2.32
2280 2292 4.390909 GGTCGACAATACTTGGAACGATTT 59.609 41.667 18.91 0.00 37.26 2.17
2281 2293 3.930848 GGTCGACAATACTTGGAACGATT 59.069 43.478 18.91 0.00 37.26 3.34
2282 2294 3.194968 AGGTCGACAATACTTGGAACGAT 59.805 43.478 18.91 0.00 37.26 3.73
2283 2295 2.559668 AGGTCGACAATACTTGGAACGA 59.440 45.455 18.91 0.00 34.55 3.85
2284 2296 2.955614 AGGTCGACAATACTTGGAACG 58.044 47.619 18.91 0.00 34.12 3.95
2285 2297 4.062991 ACAAGGTCGACAATACTTGGAAC 58.937 43.478 25.84 4.98 43.36 3.62
2286 2298 4.062293 CACAAGGTCGACAATACTTGGAA 58.938 43.478 25.84 0.00 43.36 3.53
2287 2299 3.070446 ACACAAGGTCGACAATACTTGGA 59.930 43.478 25.84 0.00 43.36 3.53
2288 2300 3.399330 ACACAAGGTCGACAATACTTGG 58.601 45.455 25.84 19.42 43.36 3.61
2289 2301 4.647291 GACACAAGGTCGACAATACTTG 57.353 45.455 22.72 22.72 44.32 3.16
2301 2313 6.545666 TCAGTTACAAATGATTGACACAAGGT 59.454 34.615 0.00 0.00 38.94 3.50
2302 2314 6.857964 GTCAGTTACAAATGATTGACACAAGG 59.142 38.462 0.00 0.00 38.94 3.61
2303 2315 7.416817 TGTCAGTTACAAATGATTGACACAAG 58.583 34.615 1.36 0.00 39.74 3.16
2304 2316 7.326968 TGTCAGTTACAAATGATTGACACAA 57.673 32.000 1.36 0.00 39.74 3.33
2305 2317 6.934048 TGTCAGTTACAAATGATTGACACA 57.066 33.333 1.36 0.00 39.74 3.72
2306 2318 8.292448 AGAATGTCAGTTACAAATGATTGACAC 58.708 33.333 7.21 0.00 45.08 3.67
2307 2319 8.394971 AGAATGTCAGTTACAAATGATTGACA 57.605 30.769 7.47 7.47 45.95 3.58
2308 2320 9.683069 AAAGAATGTCAGTTACAAATGATTGAC 57.317 29.630 0.00 0.00 42.70 3.18
2309 2321 9.897744 GAAAGAATGTCAGTTACAAATGATTGA 57.102 29.630 0.00 0.00 42.70 2.57
2310 2322 9.903682 AGAAAGAATGTCAGTTACAAATGATTG 57.096 29.630 0.00 0.00 42.70 2.67
2317 2329 9.787532 CTGAAAAAGAAAGAATGTCAGTTACAA 57.212 29.630 0.00 0.00 42.70 2.41
2318 2330 8.956426 ACTGAAAAAGAAAGAATGTCAGTTACA 58.044 29.630 0.00 0.00 40.93 2.41
2322 2334 8.306761 ACAAACTGAAAAAGAAAGAATGTCAGT 58.693 29.630 0.00 0.00 44.51 3.41
2323 2335 8.693542 ACAAACTGAAAAAGAAAGAATGTCAG 57.306 30.769 0.00 0.00 37.59 3.51
2342 2354 7.731792 GTGCATCACAGTTGTGTAATACAAACT 60.732 37.037 11.66 12.08 45.76 2.66
2343 2355 6.359617 GTGCATCACAGTTGTGTAATACAAAC 59.640 38.462 11.66 2.96 45.76 2.93
2344 2356 6.434596 GTGCATCACAGTTGTGTAATACAAA 58.565 36.000 11.66 0.00 45.76 2.83
2345 2357 5.333721 CGTGCATCACAGTTGTGTAATACAA 60.334 40.000 11.66 0.00 45.76 2.41
2346 2358 4.151512 CGTGCATCACAGTTGTGTAATACA 59.848 41.667 11.66 0.00 45.76 2.29
2347 2359 4.387559 TCGTGCATCACAGTTGTGTAATAC 59.612 41.667 11.66 7.11 45.76 1.89
2348 2360 4.561105 TCGTGCATCACAGTTGTGTAATA 58.439 39.130 11.66 0.00 45.76 0.98
2349 2361 3.398406 TCGTGCATCACAGTTGTGTAAT 58.602 40.909 11.66 0.00 45.76 1.89
2350 2362 2.827652 TCGTGCATCACAGTTGTGTAA 58.172 42.857 11.66 0.00 45.76 2.41
2351 2363 2.517650 TCGTGCATCACAGTTGTGTA 57.482 45.000 11.66 0.44 45.76 2.90
2352 2364 1.330521 GTTCGTGCATCACAGTTGTGT 59.669 47.619 11.66 0.00 45.76 3.72
2353 2365 1.330213 TGTTCGTGCATCACAGTTGTG 59.670 47.619 5.91 5.91 46.91 3.33
2354 2366 1.662517 TGTTCGTGCATCACAGTTGT 58.337 45.000 0.00 0.00 33.40 3.32
2355 2367 2.975410 ATGTTCGTGCATCACAGTTG 57.025 45.000 0.00 0.00 33.40 3.16
2356 2368 4.065088 AGTAATGTTCGTGCATCACAGTT 58.935 39.130 0.00 0.00 33.40 3.16
2357 2369 3.664107 AGTAATGTTCGTGCATCACAGT 58.336 40.909 0.00 0.00 33.40 3.55
2358 2370 4.083855 ACAAGTAATGTTCGTGCATCACAG 60.084 41.667 0.00 0.00 40.06 3.66
2359 2371 3.812609 ACAAGTAATGTTCGTGCATCACA 59.187 39.130 0.00 0.00 40.06 3.58
2360 2372 4.404507 ACAAGTAATGTTCGTGCATCAC 57.595 40.909 0.00 0.00 40.06 3.06
2374 2386 6.680810 TCGCTAGCAGTTACTAAACAAGTAA 58.319 36.000 16.45 0.00 46.25 2.24
2375 2387 6.258230 TCGCTAGCAGTTACTAAACAAGTA 57.742 37.500 16.45 0.00 39.80 2.24
2376 2388 5.130292 TCGCTAGCAGTTACTAAACAAGT 57.870 39.130 16.45 0.00 42.62 3.16
2377 2389 4.563184 CCTCGCTAGCAGTTACTAAACAAG 59.437 45.833 16.45 0.00 38.12 3.16
2378 2390 4.219070 TCCTCGCTAGCAGTTACTAAACAA 59.781 41.667 16.45 0.00 38.12 2.83
2379 2391 3.760151 TCCTCGCTAGCAGTTACTAAACA 59.240 43.478 16.45 0.00 38.12 2.83
2380 2392 4.367386 TCCTCGCTAGCAGTTACTAAAC 57.633 45.455 16.45 0.00 35.72 2.01
2381 2393 5.105473 ACATTCCTCGCTAGCAGTTACTAAA 60.105 40.000 16.45 0.00 0.00 1.85
2382 2394 4.401519 ACATTCCTCGCTAGCAGTTACTAA 59.598 41.667 16.45 0.00 0.00 2.24
2383 2395 3.952323 ACATTCCTCGCTAGCAGTTACTA 59.048 43.478 16.45 0.00 0.00 1.82
2384 2396 2.761208 ACATTCCTCGCTAGCAGTTACT 59.239 45.455 16.45 0.00 0.00 2.24
2385 2397 3.166489 ACATTCCTCGCTAGCAGTTAC 57.834 47.619 16.45 0.00 0.00 2.50
2386 2398 3.887621 AACATTCCTCGCTAGCAGTTA 57.112 42.857 16.45 2.39 0.00 2.24
2387 2399 2.744202 CAAACATTCCTCGCTAGCAGTT 59.256 45.455 16.45 4.52 0.00 3.16
2388 2400 2.028112 TCAAACATTCCTCGCTAGCAGT 60.028 45.455 16.45 0.00 0.00 4.40
2389 2401 2.621338 TCAAACATTCCTCGCTAGCAG 58.379 47.619 16.45 10.99 0.00 4.24
2390 2402 2.760634 TCAAACATTCCTCGCTAGCA 57.239 45.000 16.45 0.92 0.00 3.49
2391 2403 2.223135 GCTTCAAACATTCCTCGCTAGC 60.223 50.000 4.06 4.06 0.00 3.42
2392 2404 3.265791 AGCTTCAAACATTCCTCGCTAG 58.734 45.455 0.00 0.00 0.00 3.42
2393 2405 3.334583 AGCTTCAAACATTCCTCGCTA 57.665 42.857 0.00 0.00 0.00 4.26
2394 2406 2.191128 AGCTTCAAACATTCCTCGCT 57.809 45.000 0.00 0.00 0.00 4.93
2395 2407 2.997485 AAGCTTCAAACATTCCTCGC 57.003 45.000 0.00 0.00 0.00 5.03
2396 2408 4.214119 TCAGAAAGCTTCAAACATTCCTCG 59.786 41.667 0.00 0.00 0.00 4.63
2397 2409 5.695851 TCAGAAAGCTTCAAACATTCCTC 57.304 39.130 0.00 0.00 0.00 3.71
2398 2410 5.595952 AGTTCAGAAAGCTTCAAACATTCCT 59.404 36.000 0.00 0.00 32.97 3.36
2399 2411 5.689068 CAGTTCAGAAAGCTTCAAACATTCC 59.311 40.000 0.00 0.00 32.97 3.01
2400 2412 6.498304 TCAGTTCAGAAAGCTTCAAACATTC 58.502 36.000 0.00 0.00 32.97 2.67
2401 2413 6.455360 TCAGTTCAGAAAGCTTCAAACATT 57.545 33.333 0.00 0.00 32.97 2.71
2402 2414 6.268566 GTTCAGTTCAGAAAGCTTCAAACAT 58.731 36.000 0.00 0.00 32.97 2.71
2403 2415 5.640732 GTTCAGTTCAGAAAGCTTCAAACA 58.359 37.500 0.00 0.00 32.97 2.83
2404 2416 4.730521 CGTTCAGTTCAGAAAGCTTCAAAC 59.269 41.667 0.00 2.38 0.00 2.93
2405 2417 4.394920 ACGTTCAGTTCAGAAAGCTTCAAA 59.605 37.500 0.00 0.00 31.43 2.69
2406 2418 3.938963 ACGTTCAGTTCAGAAAGCTTCAA 59.061 39.130 0.00 0.00 31.43 2.69
2407 2419 3.309682 CACGTTCAGTTCAGAAAGCTTCA 59.690 43.478 0.00 0.00 31.43 3.02
2408 2420 3.846383 GCACGTTCAGTTCAGAAAGCTTC 60.846 47.826 0.00 0.00 31.43 3.86
2409 2421 2.032178 GCACGTTCAGTTCAGAAAGCTT 59.968 45.455 0.00 0.00 31.43 3.74
2410 2422 1.599542 GCACGTTCAGTTCAGAAAGCT 59.400 47.619 0.00 0.00 31.43 3.74
2411 2423 1.599542 AGCACGTTCAGTTCAGAAAGC 59.400 47.619 0.00 0.00 31.43 3.51
2412 2424 2.866156 TGAGCACGTTCAGTTCAGAAAG 59.134 45.455 0.00 0.00 33.95 2.62
2413 2425 2.899976 TGAGCACGTTCAGTTCAGAAA 58.100 42.857 0.00 0.00 0.00 2.52
2414 2426 2.595124 TGAGCACGTTCAGTTCAGAA 57.405 45.000 0.00 0.00 0.00 3.02
2415 2427 2.610479 GGATGAGCACGTTCAGTTCAGA 60.610 50.000 0.00 0.00 0.00 3.27
2416 2428 1.728971 GGATGAGCACGTTCAGTTCAG 59.271 52.381 0.00 0.00 0.00 3.02
2417 2429 1.344438 AGGATGAGCACGTTCAGTTCA 59.656 47.619 0.00 0.00 0.00 3.18
2418 2430 2.086054 AGGATGAGCACGTTCAGTTC 57.914 50.000 0.00 0.00 0.00 3.01
2419 2431 2.549754 CAAAGGATGAGCACGTTCAGTT 59.450 45.455 0.00 0.00 0.00 3.16
2420 2432 2.146342 CAAAGGATGAGCACGTTCAGT 58.854 47.619 0.00 0.00 0.00 3.41
2421 2433 2.146342 ACAAAGGATGAGCACGTTCAG 58.854 47.619 0.00 0.00 0.00 3.02
2422 2434 2.254546 ACAAAGGATGAGCACGTTCA 57.745 45.000 0.00 0.00 0.00 3.18
2423 2435 2.548057 TGAACAAAGGATGAGCACGTTC 59.452 45.455 0.00 0.00 33.57 3.95
2424 2436 2.571212 TGAACAAAGGATGAGCACGTT 58.429 42.857 0.00 0.00 0.00 3.99
2425 2437 2.254546 TGAACAAAGGATGAGCACGT 57.745 45.000 0.00 0.00 0.00 4.49
2426 2438 3.837213 AATGAACAAAGGATGAGCACG 57.163 42.857 0.00 0.00 0.00 5.34
2427 2439 7.487189 CAGAAATAATGAACAAAGGATGAGCAC 59.513 37.037 0.00 0.00 0.00 4.40
2428 2440 7.177216 ACAGAAATAATGAACAAAGGATGAGCA 59.823 33.333 0.00 0.00 0.00 4.26
2429 2441 7.542025 ACAGAAATAATGAACAAAGGATGAGC 58.458 34.615 0.00 0.00 0.00 4.26
2435 2447 9.793252 CCTGATAACAGAAATAATGAACAAAGG 57.207 33.333 0.79 0.00 46.03 3.11
2439 2451 9.295825 ACAACCTGATAACAGAAATAATGAACA 57.704 29.630 0.79 0.00 46.03 3.18
2443 2455 9.357652 CCAAACAACCTGATAACAGAAATAATG 57.642 33.333 0.79 0.00 46.03 1.90
2444 2456 9.308000 TCCAAACAACCTGATAACAGAAATAAT 57.692 29.630 0.79 0.00 46.03 1.28
2445 2457 8.698973 TCCAAACAACCTGATAACAGAAATAA 57.301 30.769 0.79 0.00 46.03 1.40
2446 2458 8.739039 CATCCAAACAACCTGATAACAGAAATA 58.261 33.333 0.79 0.00 46.03 1.40
2447 2459 7.451255 TCATCCAAACAACCTGATAACAGAAAT 59.549 33.333 0.79 0.00 46.03 2.17
2448 2460 6.775142 TCATCCAAACAACCTGATAACAGAAA 59.225 34.615 0.79 0.00 46.03 2.52
2449 2461 6.303054 TCATCCAAACAACCTGATAACAGAA 58.697 36.000 0.79 0.00 46.03 3.02
2450 2462 5.875224 TCATCCAAACAACCTGATAACAGA 58.125 37.500 0.79 0.00 46.03 3.41
2451 2463 6.349611 CCTTCATCCAAACAACCTGATAACAG 60.350 42.308 0.00 0.00 43.12 3.16
2452 2464 5.476599 CCTTCATCCAAACAACCTGATAACA 59.523 40.000 0.00 0.00 0.00 2.41
2453 2465 5.710099 TCCTTCATCCAAACAACCTGATAAC 59.290 40.000 0.00 0.00 0.00 1.89
2454 2466 5.886609 TCCTTCATCCAAACAACCTGATAA 58.113 37.500 0.00 0.00 0.00 1.75
2455 2467 5.512942 TCCTTCATCCAAACAACCTGATA 57.487 39.130 0.00 0.00 0.00 2.15
2456 2468 4.387026 TCCTTCATCCAAACAACCTGAT 57.613 40.909 0.00 0.00 0.00 2.90
2457 2469 3.874383 TCCTTCATCCAAACAACCTGA 57.126 42.857 0.00 0.00 0.00 3.86
2458 2470 5.473039 GAATTCCTTCATCCAAACAACCTG 58.527 41.667 0.00 0.00 0.00 4.00
2459 2471 4.528206 GGAATTCCTTCATCCAAACAACCT 59.472 41.667 17.73 0.00 32.70 3.50
2460 2472 4.618227 CGGAATTCCTTCATCCAAACAACC 60.618 45.833 22.05 0.00 32.70 3.77
2461 2473 4.217550 TCGGAATTCCTTCATCCAAACAAC 59.782 41.667 22.05 0.00 32.70 3.32
2462 2474 4.402829 TCGGAATTCCTTCATCCAAACAA 58.597 39.130 22.05 0.00 32.70 2.83
2463 2475 4.027674 TCGGAATTCCTTCATCCAAACA 57.972 40.909 22.05 0.00 32.70 2.83
2464 2476 4.380550 GGTTCGGAATTCCTTCATCCAAAC 60.381 45.833 22.05 11.78 32.70 2.93
2465 2477 3.761752 GGTTCGGAATTCCTTCATCCAAA 59.238 43.478 22.05 1.55 32.70 3.28
2466 2478 3.010138 AGGTTCGGAATTCCTTCATCCAA 59.990 43.478 22.05 1.25 32.70 3.53
2467 2479 2.576191 AGGTTCGGAATTCCTTCATCCA 59.424 45.455 22.05 0.00 32.70 3.41
2468 2480 3.283259 AGGTTCGGAATTCCTTCATCC 57.717 47.619 22.05 15.43 32.70 3.51
2469 2481 4.700213 TCAAAGGTTCGGAATTCCTTCATC 59.300 41.667 22.05 6.28 40.18 2.92
2470 2482 4.662278 TCAAAGGTTCGGAATTCCTTCAT 58.338 39.130 22.05 7.26 40.18 2.57
2471 2483 4.093472 TCAAAGGTTCGGAATTCCTTCA 57.907 40.909 22.05 3.31 40.18 3.02
2472 2484 4.700213 TCATCAAAGGTTCGGAATTCCTTC 59.300 41.667 22.05 11.50 40.18 3.46
2473 2485 4.459337 GTCATCAAAGGTTCGGAATTCCTT 59.541 41.667 22.05 6.51 42.47 3.36
2474 2486 4.010349 GTCATCAAAGGTTCGGAATTCCT 58.990 43.478 22.05 0.00 0.00 3.36
2475 2487 3.756434 TGTCATCAAAGGTTCGGAATTCC 59.244 43.478 15.01 15.01 0.00 3.01
2476 2488 5.371115 TTGTCATCAAAGGTTCGGAATTC 57.629 39.130 0.00 0.00 0.00 2.17
2477 2489 5.982890 ATTGTCATCAAAGGTTCGGAATT 57.017 34.783 0.00 0.00 37.11 2.17
2478 2490 5.105756 GGAATTGTCATCAAAGGTTCGGAAT 60.106 40.000 0.00 0.00 37.11 3.01
2479 2491 4.217550 GGAATTGTCATCAAAGGTTCGGAA 59.782 41.667 0.00 0.00 37.11 4.30
2480 2492 3.756434 GGAATTGTCATCAAAGGTTCGGA 59.244 43.478 0.00 0.00 37.11 4.55
2481 2493 3.505680 TGGAATTGTCATCAAAGGTTCGG 59.494 43.478 0.00 0.00 37.11 4.30
2482 2494 4.726416 CTGGAATTGTCATCAAAGGTTCG 58.274 43.478 0.00 0.00 37.11 3.95
2483 2495 4.022068 TGCTGGAATTGTCATCAAAGGTTC 60.022 41.667 0.00 0.00 37.11 3.62
2484 2496 3.896888 TGCTGGAATTGTCATCAAAGGTT 59.103 39.130 0.00 0.00 37.11 3.50
2485 2497 3.256631 GTGCTGGAATTGTCATCAAAGGT 59.743 43.478 0.00 0.00 37.11 3.50
2486 2498 3.367703 GGTGCTGGAATTGTCATCAAAGG 60.368 47.826 0.00 0.00 37.11 3.11
2487 2499 3.256383 TGGTGCTGGAATTGTCATCAAAG 59.744 43.478 0.00 0.00 37.11 2.77
2488 2500 3.229293 TGGTGCTGGAATTGTCATCAAA 58.771 40.909 0.00 0.00 37.11 2.69
2489 2501 2.874014 TGGTGCTGGAATTGTCATCAA 58.126 42.857 0.00 0.00 37.98 2.57
2490 2502 2.583024 TGGTGCTGGAATTGTCATCA 57.417 45.000 0.00 0.00 0.00 3.07
2491 2503 5.581126 TTAATGGTGCTGGAATTGTCATC 57.419 39.130 0.00 0.00 0.00 2.92
2492 2504 5.422970 ACATTAATGGTGCTGGAATTGTCAT 59.577 36.000 19.37 0.00 0.00 3.06
2493 2505 4.771577 ACATTAATGGTGCTGGAATTGTCA 59.228 37.500 19.37 0.00 0.00 3.58
2494 2506 5.329035 ACATTAATGGTGCTGGAATTGTC 57.671 39.130 19.37 0.00 0.00 3.18
2495 2507 5.245751 TCAACATTAATGGTGCTGGAATTGT 59.754 36.000 25.73 0.00 44.96 2.71
2496 2508 5.722263 TCAACATTAATGGTGCTGGAATTG 58.278 37.500 25.73 13.99 44.96 2.32
2497 2509 5.999205 TCAACATTAATGGTGCTGGAATT 57.001 34.783 25.73 2.83 44.96 2.17
2498 2510 6.835488 AGTATCAACATTAATGGTGCTGGAAT 59.165 34.615 25.73 16.65 44.96 3.01
2499 2511 6.095300 CAGTATCAACATTAATGGTGCTGGAA 59.905 38.462 25.73 10.95 44.96 3.53
2500 2512 5.589855 CAGTATCAACATTAATGGTGCTGGA 59.410 40.000 25.73 11.30 44.96 3.86
2501 2513 5.221106 CCAGTATCAACATTAATGGTGCTGG 60.221 44.000 28.97 28.97 44.96 4.85
2502 2514 5.357878 ACCAGTATCAACATTAATGGTGCTG 59.642 40.000 25.73 23.97 44.06 4.41
2503 2515 5.509498 ACCAGTATCAACATTAATGGTGCT 58.491 37.500 25.73 19.79 44.06 4.40
2504 2516 5.835113 ACCAGTATCAACATTAATGGTGC 57.165 39.130 25.73 13.75 44.06 5.01
2506 2518 8.736244 GTTAACACCAGTATCAACATTAATGGT 58.264 33.333 19.37 10.56 45.99 3.55
2507 2519 8.735315 TGTTAACACCAGTATCAACATTAATGG 58.265 33.333 19.37 2.53 39.94 3.16
2510 2522 9.953697 GTTTGTTAACACCAGTATCAACATTAA 57.046 29.630 8.07 0.00 34.31 1.40
2511 2523 9.121658 TGTTTGTTAACACCAGTATCAACATTA 57.878 29.630 8.07 0.00 39.29 1.90
2512 2524 8.001881 TGTTTGTTAACACCAGTATCAACATT 57.998 30.769 8.07 0.00 39.29 2.71
2513 2525 7.575414 TGTTTGTTAACACCAGTATCAACAT 57.425 32.000 8.07 0.00 39.29 2.71
2514 2526 6.459024 GCTGTTTGTTAACACCAGTATCAACA 60.459 38.462 24.61 19.71 39.29 3.33
2515 2527 5.912955 GCTGTTTGTTAACACCAGTATCAAC 59.087 40.000 24.61 17.14 39.29 3.18
2516 2528 5.825679 AGCTGTTTGTTAACACCAGTATCAA 59.174 36.000 24.61 8.16 39.29 2.57
2517 2529 5.373222 AGCTGTTTGTTAACACCAGTATCA 58.627 37.500 24.61 10.37 39.29 2.15
2518 2530 5.941948 AGCTGTTTGTTAACACCAGTATC 57.058 39.130 24.61 14.48 39.29 2.24
2519 2531 6.073440 CGTAAGCTGTTTGTTAACACCAGTAT 60.073 38.462 24.61 18.78 39.29 2.12
2520 2532 5.234757 CGTAAGCTGTTTGTTAACACCAGTA 59.765 40.000 24.61 13.99 39.29 2.74
2521 2533 4.034742 CGTAAGCTGTTTGTTAACACCAGT 59.965 41.667 24.61 14.69 39.29 4.00
2522 2534 4.523813 CGTAAGCTGTTTGTTAACACCAG 58.476 43.478 21.87 21.87 39.29 4.00
2523 2535 3.312973 CCGTAAGCTGTTTGTTAACACCA 59.687 43.478 8.07 7.35 39.29 4.17
2524 2536 3.560896 TCCGTAAGCTGTTTGTTAACACC 59.439 43.478 8.07 2.59 39.29 4.16
2525 2537 4.508861 TCTCCGTAAGCTGTTTGTTAACAC 59.491 41.667 8.07 0.00 39.29 3.32
2526 2538 4.695396 TCTCCGTAAGCTGTTTGTTAACA 58.305 39.130 3.59 3.59 41.82 2.41
2527 2539 5.407387 TCATCTCCGTAAGCTGTTTGTTAAC 59.593 40.000 0.00 0.00 34.75 2.01
2528 2540 5.543714 TCATCTCCGTAAGCTGTTTGTTAA 58.456 37.500 0.00 0.00 0.00 2.01
2529 2541 5.142061 TCATCTCCGTAAGCTGTTTGTTA 57.858 39.130 0.00 0.00 0.00 2.41
2530 2542 4.002906 TCATCTCCGTAAGCTGTTTGTT 57.997 40.909 0.00 0.00 0.00 2.83
2531 2543 3.678056 TCATCTCCGTAAGCTGTTTGT 57.322 42.857 0.00 0.00 0.00 2.83
2532 2544 4.183865 TGATCATCTCCGTAAGCTGTTTG 58.816 43.478 0.00 0.00 0.00 2.93
2533 2545 4.471904 TGATCATCTCCGTAAGCTGTTT 57.528 40.909 0.00 0.00 0.00 2.83
2534 2546 4.100035 TCATGATCATCTCCGTAAGCTGTT 59.900 41.667 4.86 0.00 0.00 3.16
2535 2547 3.638627 TCATGATCATCTCCGTAAGCTGT 59.361 43.478 4.86 0.00 0.00 4.40
2536 2548 4.248691 TCATGATCATCTCCGTAAGCTG 57.751 45.455 4.86 0.00 0.00 4.24
2537 2549 4.944619 TTCATGATCATCTCCGTAAGCT 57.055 40.909 4.86 0.00 0.00 3.74
2538 2550 5.698089 TGATTTCATGATCATCTCCGTAAGC 59.302 40.000 4.86 0.00 31.35 3.09
2539 2551 6.146837 GGTGATTTCATGATCATCTCCGTAAG 59.853 42.308 4.86 0.00 38.25 2.34
2540 2552 5.991606 GGTGATTTCATGATCATCTCCGTAA 59.008 40.000 4.86 0.00 38.25 3.18
2541 2553 5.511373 GGGTGATTTCATGATCATCTCCGTA 60.511 44.000 20.12 0.00 37.33 4.02
2542 2554 4.384056 GGTGATTTCATGATCATCTCCGT 58.616 43.478 4.86 0.00 38.25 4.69
2543 2555 3.750130 GGGTGATTTCATGATCATCTCCG 59.250 47.826 20.12 0.00 37.33 4.63
2544 2556 3.750130 CGGGTGATTTCATGATCATCTCC 59.250 47.826 19.36 19.36 37.33 3.71
2545 2557 4.635223 TCGGGTGATTTCATGATCATCTC 58.365 43.478 4.86 8.53 37.33 2.75
2546 2558 4.694760 TCGGGTGATTTCATGATCATCT 57.305 40.909 4.86 0.00 37.33 2.90
2547 2559 4.023707 GGTTCGGGTGATTTCATGATCATC 60.024 45.833 4.86 0.00 38.25 2.92
2548 2560 3.885297 GGTTCGGGTGATTTCATGATCAT 59.115 43.478 1.18 1.18 38.25 2.45
2549 2561 3.054434 AGGTTCGGGTGATTTCATGATCA 60.054 43.478 0.00 0.00 33.81 2.92
2550 2562 3.313526 CAGGTTCGGGTGATTTCATGATC 59.686 47.826 0.00 0.00 0.00 2.92
2551 2563 3.282021 CAGGTTCGGGTGATTTCATGAT 58.718 45.455 0.00 0.00 0.00 2.45
2552 2564 2.617788 CCAGGTTCGGGTGATTTCATGA 60.618 50.000 0.00 0.00 0.00 3.07
2553 2565 1.745087 CCAGGTTCGGGTGATTTCATG 59.255 52.381 0.00 0.00 0.00 3.07
2554 2566 1.340991 CCCAGGTTCGGGTGATTTCAT 60.341 52.381 0.00 0.00 41.83 2.57
2555 2567 0.037590 CCCAGGTTCGGGTGATTTCA 59.962 55.000 0.00 0.00 41.83 2.69
2556 2568 2.868253 CCCAGGTTCGGGTGATTTC 58.132 57.895 0.00 0.00 41.83 2.17
2570 2582 1.137872 CAAGTAGTAGCTCCTGCCCAG 59.862 57.143 0.00 0.00 40.80 4.45
2571 2583 1.195115 CAAGTAGTAGCTCCTGCCCA 58.805 55.000 0.00 0.00 40.80 5.36
2572 2584 0.466124 CCAAGTAGTAGCTCCTGCCC 59.534 60.000 0.00 0.00 40.80 5.36
2573 2585 1.486211 TCCAAGTAGTAGCTCCTGCC 58.514 55.000 0.00 0.00 40.80 4.85
2574 2586 3.263261 GTTTCCAAGTAGTAGCTCCTGC 58.737 50.000 0.00 0.00 40.05 4.85
2575 2587 3.676324 CGGTTTCCAAGTAGTAGCTCCTG 60.676 52.174 0.00 0.00 0.00 3.86
2576 2588 2.496470 CGGTTTCCAAGTAGTAGCTCCT 59.504 50.000 0.00 0.00 0.00 3.69
2577 2589 2.418334 CCGGTTTCCAAGTAGTAGCTCC 60.418 54.545 0.00 0.00 0.00 4.70
2578 2590 2.494870 TCCGGTTTCCAAGTAGTAGCTC 59.505 50.000 0.00 0.00 0.00 4.09
2579 2591 2.532843 TCCGGTTTCCAAGTAGTAGCT 58.467 47.619 0.00 0.00 0.00 3.32
2580 2592 3.323751 TTCCGGTTTCCAAGTAGTAGC 57.676 47.619 0.00 0.00 0.00 3.58
2581 2593 9.038803 GTTTATATTCCGGTTTCCAAGTAGTAG 57.961 37.037 0.00 0.00 0.00 2.57
2582 2594 7.986889 GGTTTATATTCCGGTTTCCAAGTAGTA 59.013 37.037 0.00 0.00 0.00 1.82
2583 2595 6.825213 GGTTTATATTCCGGTTTCCAAGTAGT 59.175 38.462 0.00 0.00 0.00 2.73
2584 2596 7.052248 AGGTTTATATTCCGGTTTCCAAGTAG 58.948 38.462 0.00 0.00 0.00 2.57
2585 2597 6.961042 AGGTTTATATTCCGGTTTCCAAGTA 58.039 36.000 0.00 0.00 0.00 2.24
2586 2598 5.823312 AGGTTTATATTCCGGTTTCCAAGT 58.177 37.500 0.00 0.00 0.00 3.16
2587 2599 9.563748 TTATAGGTTTATATTCCGGTTTCCAAG 57.436 33.333 0.00 0.00 0.00 3.61
2652 2664 9.077885 TGAACAATATAAGAAAACAAGGAGCTT 57.922 29.630 0.00 0.00 0.00 3.74
2653 2665 8.515414 GTGAACAATATAAGAAAACAAGGAGCT 58.485 33.333 0.00 0.00 0.00 4.09
2654 2666 8.296713 TGTGAACAATATAAGAAAACAAGGAGC 58.703 33.333 0.00 0.00 0.00 4.70
2657 2669 9.965824 ACTTGTGAACAATATAAGAAAACAAGG 57.034 29.630 14.17 0.28 43.82 3.61
2663 2675 9.677567 GCTCAAACTTGTGAACAATATAAGAAA 57.322 29.630 0.00 0.00 35.02 2.52
2664 2676 8.015087 CGCTCAAACTTGTGAACAATATAAGAA 58.985 33.333 0.00 0.00 35.02 2.52
2665 2677 7.518161 CGCTCAAACTTGTGAACAATATAAGA 58.482 34.615 0.00 0.00 35.02 2.10
2666 2678 6.249260 GCGCTCAAACTTGTGAACAATATAAG 59.751 38.462 0.00 0.00 35.02 1.73
2667 2679 6.083630 GCGCTCAAACTTGTGAACAATATAA 58.916 36.000 0.00 0.00 35.02 0.98
2668 2680 5.391523 GGCGCTCAAACTTGTGAACAATATA 60.392 40.000 7.64 0.00 35.02 0.86
2669 2681 4.475944 GCGCTCAAACTTGTGAACAATAT 58.524 39.130 0.00 0.00 35.02 1.28
2670 2682 3.304391 GGCGCTCAAACTTGTGAACAATA 60.304 43.478 7.64 0.00 35.02 1.90
2671 2683 2.543653 GGCGCTCAAACTTGTGAACAAT 60.544 45.455 7.64 0.00 35.02 2.71
2672 2684 1.202245 GGCGCTCAAACTTGTGAACAA 60.202 47.619 7.64 0.00 0.00 2.83
2673 2685 0.380378 GGCGCTCAAACTTGTGAACA 59.620 50.000 7.64 0.00 0.00 3.18
2674 2686 0.380378 TGGCGCTCAAACTTGTGAAC 59.620 50.000 7.64 0.00 0.00 3.18
2675 2687 1.317613 ATGGCGCTCAAACTTGTGAA 58.682 45.000 7.64 0.00 0.00 3.18
2676 2688 1.317613 AATGGCGCTCAAACTTGTGA 58.682 45.000 7.64 0.00 0.00 3.58
2677 2689 2.138596 AAATGGCGCTCAAACTTGTG 57.861 45.000 7.64 0.00 0.00 3.33
2678 2690 2.888834 AAAATGGCGCTCAAACTTGT 57.111 40.000 7.64 0.00 0.00 3.16
2679 2691 3.122297 TGAAAAATGGCGCTCAAACTTG 58.878 40.909 7.64 0.00 0.00 3.16
2680 2692 3.451141 TGAAAAATGGCGCTCAAACTT 57.549 38.095 7.64 0.00 0.00 2.66
2681 2693 3.243839 ACATGAAAAATGGCGCTCAAACT 60.244 39.130 7.64 0.00 0.00 2.66
2682 2694 3.059166 ACATGAAAAATGGCGCTCAAAC 58.941 40.909 7.64 0.00 0.00 2.93
2683 2695 3.383620 ACATGAAAAATGGCGCTCAAA 57.616 38.095 7.64 0.00 0.00 2.69
2684 2696 3.383620 AACATGAAAAATGGCGCTCAA 57.616 38.095 7.64 0.00 0.00 3.02
2685 2697 3.366883 GGTAACATGAAAAATGGCGCTCA 60.367 43.478 7.64 3.81 0.00 4.26
2686 2698 3.179048 GGTAACATGAAAAATGGCGCTC 58.821 45.455 7.64 0.00 0.00 5.03
2687 2699 3.230743 GGTAACATGAAAAATGGCGCT 57.769 42.857 7.64 0.00 0.00 5.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.