Multiple sequence alignment - TraesCS2B01G560200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G560200 chr2B 100.000 3360 0 0 1 3360 753805891 753802532 0.000000e+00 6205.0
1 TraesCS2B01G560200 chr2B 100.000 1692 0 0 3640 5331 753802252 753800561 0.000000e+00 3125.0
2 TraesCS2B01G560200 chr2B 97.076 171 5 0 1886 2056 246361990 246361820 6.760000e-74 289.0
3 TraesCS2B01G560200 chr2B 93.939 165 8 2 4075 4238 128735947 128736110 1.150000e-61 248.0
4 TraesCS2B01G560200 chr2D 95.185 1703 44 12 3640 5331 617893804 617895479 0.000000e+00 2656.0
5 TraesCS2B01G560200 chr2D 92.828 1241 35 26 686 1890 617890796 617892018 0.000000e+00 1749.0
6 TraesCS2B01G560200 chr2D 98.538 889 11 2 2455 3341 617892604 617893492 0.000000e+00 1568.0
7 TraesCS2B01G560200 chr2D 95.833 408 17 0 2052 2459 617892017 617892424 0.000000e+00 660.0
8 TraesCS2B01G560200 chr2D 83.951 243 15 15 404 633 627038892 627039123 1.500000e-50 211.0
9 TraesCS2B01G560200 chr2D 82.796 186 15 10 58 226 617890181 617890366 3.330000e-32 150.0
10 TraesCS2B01G560200 chr2D 93.878 49 2 1 7 54 617890058 617890106 7.410000e-09 73.1
11 TraesCS2B01G560200 chr2A 92.739 1694 61 23 3640 5331 748443758 748445391 0.000000e+00 2390.0
12 TraesCS2B01G560200 chr2A 92.739 1212 53 15 686 1888 748441050 748442235 0.000000e+00 1718.0
13 TraesCS2B01G560200 chr2A 96.973 892 22 5 2455 3341 748442822 748443713 0.000000e+00 1493.0
14 TraesCS2B01G560200 chr2A 95.332 407 18 1 2053 2459 748442237 748442642 0.000000e+00 645.0
15 TraesCS2B01G560200 chr2A 97.093 172 4 1 1886 2056 495825457 495825628 6.760000e-74 289.0
16 TraesCS2B01G560200 chr2A 97.041 169 5 0 1885 2053 773064304 773064472 8.740000e-73 285.0
17 TraesCS2B01G560200 chr2A 82.759 261 23 16 58 296 748440421 748440681 4.180000e-51 213.0
18 TraesCS2B01G560200 chr6A 94.366 710 27 7 4075 4784 477475522 477476218 0.000000e+00 1077.0
19 TraesCS2B01G560200 chr6A 93.918 707 31 6 4078 4784 239256641 239255947 0.000000e+00 1057.0
20 TraesCS2B01G560200 chr6A 83.456 272 20 16 404 656 592346561 592346296 4.150000e-56 230.0
21 TraesCS2B01G560200 chr7B 94.201 707 28 7 4078 4784 382088142 382087449 0.000000e+00 1066.0
22 TraesCS2B01G560200 chr7B 88.048 502 45 10 4842 5331 745144748 745144250 9.950000e-162 580.0
23 TraesCS2B01G560200 chr7B 88.991 109 3 3 54 153 7810643 7810535 5.610000e-25 126.0
24 TraesCS2B01G560200 chr6B 93.944 710 30 7 4075 4784 714156391 714157087 0.000000e+00 1061.0
25 TraesCS2B01G560200 chr6B 80.297 269 32 14 404 656 157641494 157641757 3.280000e-42 183.0
26 TraesCS2B01G560200 chr6B 81.557 244 26 12 403 633 640981895 640981658 3.280000e-42 183.0
27 TraesCS2B01G560200 chr4A 93.944 710 30 7 4075 4784 29478166 29478862 0.000000e+00 1061.0
28 TraesCS2B01G560200 chr4A 93.918 707 30 7 4078 4784 51046821 51046128 0.000000e+00 1055.0
29 TraesCS2B01G560200 chr4A 96.512 172 6 0 1885 2056 738076898 738077069 8.740000e-73 285.0
30 TraesCS2B01G560200 chr1B 93.803 710 31 7 4075 4784 82987537 82988233 0.000000e+00 1055.0
31 TraesCS2B01G560200 chr1B 83.817 241 21 10 404 634 470724253 470724021 4.180000e-51 213.0
32 TraesCS2B01G560200 chr7D 88.485 495 44 7 4842 5331 632163997 632163511 2.140000e-163 586.0
33 TraesCS2B01G560200 chr7D 83.402 241 16 10 404 633 533486223 533485996 9.050000e-48 202.0
34 TraesCS2B01G560200 chr7D 81.702 235 25 11 404 633 520343235 520343456 4.240000e-41 180.0
35 TraesCS2B01G560200 chr1A 88.485 495 38 11 4842 5331 6422214 6422694 9.950000e-162 580.0
36 TraesCS2B01G560200 chr5D 91.045 268 22 2 1016 1282 451684374 451684640 1.410000e-95 361.0
37 TraesCS2B01G560200 chr5B 90.299 268 24 2 1016 1282 551509150 551509416 3.060000e-92 350.0
38 TraesCS2B01G560200 chr5B 99.405 168 1 0 1886 2053 684752321 684752488 6.710000e-79 305.0
39 TraesCS2B01G560200 chr5B 97.633 169 4 0 1886 2054 54866743 54866911 1.880000e-74 291.0
40 TraesCS2B01G560200 chr3B 96.296 189 4 2 4596 4784 369452361 369452176 1.860000e-79 307.0
41 TraesCS2B01G560200 chr3B 97.041 169 5 0 1885 2053 246304018 246303850 8.740000e-73 285.0
42 TraesCS2B01G560200 chr3B 96.512 172 6 0 1885 2056 658491671 658491842 8.740000e-73 285.0
43 TraesCS2B01G560200 chr3B 84.470 264 21 12 407 655 606379303 606379561 5.330000e-60 243.0
44 TraesCS2B01G560200 chrUn 96.471 170 6 0 1887 2056 15911382 15911551 1.130000e-71 281.0
45 TraesCS2B01G560200 chr6D 81.048 248 27 13 404 638 82591065 82591305 4.240000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G560200 chr2B 753800561 753805891 5330 True 4665.000000 6205 100.000000 1 5331 2 chr2B.!!$R2 5330
1 TraesCS2B01G560200 chr2D 617890058 617895479 5421 False 1142.683333 2656 93.176333 7 5331 6 chr2D.!!$F2 5324
2 TraesCS2B01G560200 chr2A 748440421 748445391 4970 False 1291.800000 2390 92.108400 58 5331 5 chr2A.!!$F3 5273
3 TraesCS2B01G560200 chr6A 477475522 477476218 696 False 1077.000000 1077 94.366000 4075 4784 1 chr6A.!!$F1 709
4 TraesCS2B01G560200 chr6A 239255947 239256641 694 True 1057.000000 1057 93.918000 4078 4784 1 chr6A.!!$R1 706
5 TraesCS2B01G560200 chr7B 382087449 382088142 693 True 1066.000000 1066 94.201000 4078 4784 1 chr7B.!!$R2 706
6 TraesCS2B01G560200 chr6B 714156391 714157087 696 False 1061.000000 1061 93.944000 4075 4784 1 chr6B.!!$F2 709
7 TraesCS2B01G560200 chr4A 29478166 29478862 696 False 1061.000000 1061 93.944000 4075 4784 1 chr4A.!!$F1 709
8 TraesCS2B01G560200 chr4A 51046128 51046821 693 True 1055.000000 1055 93.918000 4078 4784 1 chr4A.!!$R1 706
9 TraesCS2B01G560200 chr1B 82987537 82988233 696 False 1055.000000 1055 93.803000 4075 4784 1 chr1B.!!$F1 709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
324 648 0.108615 TGCGGAGTTAGAAGAGCAGC 60.109 55.000 0.00 0.00 0.00 5.25 F
674 1063 0.109226 CGACCCTGACGACCTTCTTC 60.109 60.000 0.00 0.00 0.00 2.87 F
676 1065 0.178929 ACCCTGACGACCTTCTTCCT 60.179 55.000 0.00 0.00 0.00 3.36 F
705 1094 0.320508 GAACTGAACTGGACCGGGTC 60.321 60.000 19.06 19.06 0.00 4.46 F
1775 2212 1.179152 TCGAGCGTCTTGGGATTACA 58.821 50.000 0.00 0.00 0.00 2.41 F
1902 2340 1.275573 GGCATATACTCCCTCCGTTCC 59.724 57.143 0.00 0.00 0.00 3.62 F
3336 3963 0.037046 GCCTGTGGCTTTGGATTTGG 60.037 55.000 0.73 0.00 46.69 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2036 2474 0.042131 ACATACTCCCTCCGTTCCCA 59.958 55.000 0.0 0.00 0.00 4.37 R
2127 2565 0.618458 ACATATCCAACACGGCCTGT 59.382 50.000 0.0 0.95 32.89 4.00 R
2242 2680 0.940126 GTAGGATGTGCATGAAGGCG 59.060 55.000 0.0 0.00 36.28 5.52 R
2269 2707 3.730215 TGGCTGATAAAGTTGGGCTTA 57.270 42.857 0.0 0.00 36.17 3.09 R
3335 3962 2.996249 TGACAGCATCTCCAATCTCC 57.004 50.000 0.0 0.00 0.00 3.71 R
3763 4411 3.119029 GCAATGCTGGGCTTCTGAATTTA 60.119 43.478 0.0 0.00 0.00 1.40 R
5310 5967 0.888619 TCCTCTTCTACTGCGTGGTG 59.111 55.000 0.0 0.00 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.097547 AGTGCGCTGTATTCATGGGC 61.098 55.000 9.73 0.00 39.58 5.36
54 55 3.087031 GCTGTATTCATGGGCTGCATAT 58.913 45.455 0.50 0.00 0.00 1.78
55 56 3.128242 GCTGTATTCATGGGCTGCATATC 59.872 47.826 0.50 0.00 0.00 1.63
56 57 3.689347 TGTATTCATGGGCTGCATATCC 58.311 45.455 0.50 0.00 0.00 2.59
101 173 0.843309 TGTTTTGTGCTCCTCCCAGA 59.157 50.000 0.00 0.00 0.00 3.86
102 174 1.239347 GTTTTGTGCTCCTCCCAGAC 58.761 55.000 0.00 0.00 0.00 3.51
103 175 1.140312 TTTTGTGCTCCTCCCAGACT 58.860 50.000 0.00 0.00 0.00 3.24
104 176 0.397941 TTTGTGCTCCTCCCAGACTG 59.602 55.000 0.00 0.00 0.00 3.51
106 178 0.114364 TGTGCTCCTCCCAGACTGTA 59.886 55.000 0.93 0.00 0.00 2.74
107 179 1.267121 GTGCTCCTCCCAGACTGTAA 58.733 55.000 0.93 0.00 0.00 2.41
108 180 1.205893 GTGCTCCTCCCAGACTGTAAG 59.794 57.143 0.93 0.00 42.29 2.34
109 181 1.077169 TGCTCCTCCCAGACTGTAAGA 59.923 52.381 0.93 0.00 37.43 2.10
111 183 2.769095 GCTCCTCCCAGACTGTAAGAAT 59.231 50.000 0.93 0.00 37.43 2.40
113 185 4.682050 GCTCCTCCCAGACTGTAAGAATTC 60.682 50.000 0.93 0.00 37.43 2.17
114 186 4.425772 TCCTCCCAGACTGTAAGAATTCA 58.574 43.478 8.44 0.00 37.43 2.57
116 188 4.223923 CCTCCCAGACTGTAAGAATTCACT 59.776 45.833 8.44 0.00 37.43 3.41
117 189 5.152623 TCCCAGACTGTAAGAATTCACTG 57.847 43.478 8.44 4.89 37.43 3.66
118 190 3.686726 CCCAGACTGTAAGAATTCACTGC 59.313 47.826 8.44 0.00 37.43 4.40
120 192 4.756642 CCAGACTGTAAGAATTCACTGCAA 59.243 41.667 8.44 0.00 37.43 4.08
125 212 6.471146 ACTGTAAGAATTCACTGCAATCTCT 58.529 36.000 8.44 0.00 37.43 3.10
166 255 6.483687 ACCTTAATTCATCGTATGCGTTTTC 58.516 36.000 2.37 0.00 39.49 2.29
167 256 5.907391 CCTTAATTCATCGTATGCGTTTTCC 59.093 40.000 2.37 0.00 39.49 3.13
169 258 5.560966 AATTCATCGTATGCGTTTTCCTT 57.439 34.783 2.37 0.00 39.49 3.36
176 265 4.273969 TCGTATGCGTTTTCCTTTTTCTGT 59.726 37.500 2.37 0.00 39.49 3.41
203 293 3.837731 GCTAGAGCTATCAAGGGGAAGAT 59.162 47.826 0.00 0.00 38.21 2.40
215 305 2.172293 AGGGGAAGATGAACAGAGCATC 59.828 50.000 0.00 0.00 41.85 3.91
226 353 3.263489 ACAGAGCATCAAGGATCAGTG 57.737 47.619 0.00 0.00 37.82 3.66
229 356 3.374367 CAGAGCATCAAGGATCAGTGTTG 59.626 47.826 0.00 0.00 37.82 3.33
230 357 3.008813 AGAGCATCAAGGATCAGTGTTGT 59.991 43.478 0.00 0.00 37.82 3.32
232 359 4.256920 AGCATCAAGGATCAGTGTTGTAC 58.743 43.478 0.00 0.00 0.00 2.90
233 360 4.019860 AGCATCAAGGATCAGTGTTGTACT 60.020 41.667 0.00 0.00 41.36 2.73
234 361 7.828638 GAGCATCAAGGATCAGTGTTGTACTG 61.829 46.154 0.00 0.75 46.56 2.74
242 369 1.967319 AGTGTTGTACTGCTGTTGGG 58.033 50.000 0.09 0.00 38.49 4.12
243 370 0.951558 GTGTTGTACTGCTGTTGGGG 59.048 55.000 0.09 0.00 0.00 4.96
244 371 0.548989 TGTTGTACTGCTGTTGGGGT 59.451 50.000 0.09 0.00 0.00 4.95
245 372 1.235724 GTTGTACTGCTGTTGGGGTC 58.764 55.000 0.09 0.00 0.00 4.46
246 373 1.136828 TTGTACTGCTGTTGGGGTCT 58.863 50.000 0.09 0.00 0.00 3.85
247 374 0.685097 TGTACTGCTGTTGGGGTCTC 59.315 55.000 0.09 0.00 0.00 3.36
248 375 0.685097 GTACTGCTGTTGGGGTCTCA 59.315 55.000 0.09 0.00 0.00 3.27
249 376 1.279271 GTACTGCTGTTGGGGTCTCAT 59.721 52.381 0.09 0.00 0.00 2.90
250 377 0.326264 ACTGCTGTTGGGGTCTCATC 59.674 55.000 0.00 0.00 0.00 2.92
251 378 0.617413 CTGCTGTTGGGGTCTCATCT 59.383 55.000 0.00 0.00 0.00 2.90
252 379 0.615331 TGCTGTTGGGGTCTCATCTC 59.385 55.000 0.00 0.00 0.00 2.75
253 380 0.908198 GCTGTTGGGGTCTCATCTCT 59.092 55.000 0.00 0.00 0.00 3.10
254 381 1.406614 GCTGTTGGGGTCTCATCTCTG 60.407 57.143 0.00 0.00 0.00 3.35
255 382 2.182827 CTGTTGGGGTCTCATCTCTGA 58.817 52.381 0.00 0.00 0.00 3.27
256 383 2.568956 CTGTTGGGGTCTCATCTCTGAA 59.431 50.000 0.00 0.00 0.00 3.02
257 384 2.978978 TGTTGGGGTCTCATCTCTGAAA 59.021 45.455 0.00 0.00 0.00 2.69
258 385 3.244561 TGTTGGGGTCTCATCTCTGAAAC 60.245 47.826 0.00 0.00 0.00 2.78
259 386 2.619931 TGGGGTCTCATCTCTGAAACA 58.380 47.619 0.00 0.00 0.00 2.83
260 387 3.184628 TGGGGTCTCATCTCTGAAACAT 58.815 45.455 0.00 0.00 0.00 2.71
261 388 3.588842 TGGGGTCTCATCTCTGAAACATT 59.411 43.478 0.00 0.00 0.00 2.71
267 394 7.337942 GGGTCTCATCTCTGAAACATTTACATT 59.662 37.037 0.00 0.00 0.00 2.71
309 632 1.159285 TTTCTGCTTGATGAGTGCGG 58.841 50.000 0.00 0.00 34.66 5.69
315 638 1.929836 GCTTGATGAGTGCGGAGTTAG 59.070 52.381 0.00 0.00 0.00 2.34
321 644 1.202582 TGAGTGCGGAGTTAGAAGAGC 59.797 52.381 0.00 0.00 0.00 4.09
324 648 0.108615 TGCGGAGTTAGAAGAGCAGC 60.109 55.000 0.00 0.00 0.00 5.25
329 653 2.626840 GAGTTAGAAGAGCAGCAAGGG 58.373 52.381 0.00 0.00 0.00 3.95
347 671 1.332997 GGGAAATGAGATGCTTGCTCG 59.667 52.381 0.00 0.00 35.15 5.03
348 672 2.012673 GGAAATGAGATGCTTGCTCGT 58.987 47.619 0.00 0.00 35.15 4.18
390 771 0.388520 TGCATTGACTGACGACCTCG 60.389 55.000 0.00 0.00 46.33 4.63
391 772 1.078759 GCATTGACTGACGACCTCGG 61.079 60.000 0.00 0.00 44.95 4.63
392 773 0.526211 CATTGACTGACGACCTCGGA 59.474 55.000 0.00 0.00 44.95 4.55
393 774 1.067846 CATTGACTGACGACCTCGGAA 60.068 52.381 0.00 0.00 44.95 4.30
394 775 1.034356 TTGACTGACGACCTCGGAAA 58.966 50.000 0.00 0.00 44.95 3.13
395 776 1.254026 TGACTGACGACCTCGGAAAT 58.746 50.000 0.00 0.00 44.95 2.17
398 779 0.530744 CTGACGACCTCGGAAATCCA 59.469 55.000 0.00 0.00 44.95 3.41
399 780 0.970640 TGACGACCTCGGAAATCCAA 59.029 50.000 0.00 0.00 44.95 3.53
400 781 1.553248 TGACGACCTCGGAAATCCAAT 59.447 47.619 0.00 0.00 44.95 3.16
403 784 4.186159 GACGACCTCGGAAATCCAATTTA 58.814 43.478 0.00 0.00 44.95 1.40
404 785 4.189231 ACGACCTCGGAAATCCAATTTAG 58.811 43.478 0.00 0.00 44.95 1.85
405 786 3.560068 CGACCTCGGAAATCCAATTTAGG 59.440 47.826 0.00 1.16 33.64 2.69
406 787 4.682320 CGACCTCGGAAATCCAATTTAGGA 60.682 45.833 0.00 0.00 37.66 2.94
407 788 5.187621 ACCTCGGAAATCCAATTTAGGAA 57.812 39.130 0.00 0.00 41.92 3.36
408 789 5.576128 ACCTCGGAAATCCAATTTAGGAAA 58.424 37.500 0.00 0.00 41.92 3.13
409 790 5.652452 ACCTCGGAAATCCAATTTAGGAAAG 59.348 40.000 0.00 0.00 41.92 2.62
410 791 5.450550 CCTCGGAAATCCAATTTAGGAAAGC 60.451 44.000 0.00 0.00 41.92 3.51
411 792 5.261216 TCGGAAATCCAATTTAGGAAAGCT 58.739 37.500 0.00 0.00 41.92 3.74
413 794 6.887545 TCGGAAATCCAATTTAGGAAAGCTTA 59.112 34.615 0.00 0.00 41.92 3.09
416 797 8.531982 GGAAATCCAATTTAGGAAAGCTTAAGT 58.468 33.333 0.00 0.00 41.92 2.24
457 846 6.606965 AAAAAGAAAAACAAGTCGAACGAC 57.393 33.333 17.79 17.79 44.86 4.34
458 847 4.932268 AAGAAAAACAAGTCGAACGACA 57.068 36.364 25.13 0.00 46.76 4.35
459 848 4.932268 AGAAAAACAAGTCGAACGACAA 57.068 36.364 25.13 0.00 46.76 3.18
460 849 5.285798 AGAAAAACAAGTCGAACGACAAA 57.714 34.783 25.13 0.00 46.76 2.83
461 850 5.875930 AGAAAAACAAGTCGAACGACAAAT 58.124 33.333 25.13 11.11 46.76 2.32
462 851 5.737290 AGAAAAACAAGTCGAACGACAAATG 59.263 36.000 25.13 21.32 46.76 2.32
463 852 4.609691 AAACAAGTCGAACGACAAATGT 57.390 36.364 25.13 21.82 46.76 2.71
464 853 4.609691 AACAAGTCGAACGACAAATGTT 57.390 36.364 25.13 24.96 46.76 2.71
465 854 5.721876 AACAAGTCGAACGACAAATGTTA 57.278 34.783 26.95 0.00 46.76 2.41
466 855 5.074430 ACAAGTCGAACGACAAATGTTAC 57.926 39.130 25.13 0.29 46.76 2.50
467 856 4.025480 ACAAGTCGAACGACAAATGTTACC 60.025 41.667 25.13 0.00 46.76 2.85
468 857 3.986277 AGTCGAACGACAAATGTTACCT 58.014 40.909 25.13 2.09 46.76 3.08
469 858 3.985925 AGTCGAACGACAAATGTTACCTC 59.014 43.478 25.13 0.00 46.76 3.85
470 859 3.122445 GTCGAACGACAAATGTTACCTCC 59.878 47.826 20.00 0.00 44.02 4.30
471 860 3.061322 CGAACGACAAATGTTACCTCCA 58.939 45.455 0.00 0.00 0.00 3.86
472 861 3.495377 CGAACGACAAATGTTACCTCCAA 59.505 43.478 0.00 0.00 0.00 3.53
473 862 4.024725 CGAACGACAAATGTTACCTCCAAA 60.025 41.667 0.00 0.00 0.00 3.28
474 863 5.334569 CGAACGACAAATGTTACCTCCAAAT 60.335 40.000 0.00 0.00 0.00 2.32
475 864 5.371115 ACGACAAATGTTACCTCCAAATG 57.629 39.130 0.00 0.00 0.00 2.32
476 865 4.825085 ACGACAAATGTTACCTCCAAATGT 59.175 37.500 0.00 0.00 0.00 2.71
477 866 5.300792 ACGACAAATGTTACCTCCAAATGTT 59.699 36.000 0.00 0.00 0.00 2.71
478 867 6.487331 ACGACAAATGTTACCTCCAAATGTTA 59.513 34.615 0.00 0.00 0.00 2.41
479 868 7.013464 ACGACAAATGTTACCTCCAAATGTTAA 59.987 33.333 0.00 0.00 0.00 2.01
480 869 7.325097 CGACAAATGTTACCTCCAAATGTTAAC 59.675 37.037 0.00 0.00 0.00 2.01
481 870 8.012957 ACAAATGTTACCTCCAAATGTTAACA 57.987 30.769 11.41 11.41 0.00 2.41
482 871 7.923878 ACAAATGTTACCTCCAAATGTTAACAC 59.076 33.333 11.22 0.00 0.00 3.32
483 872 6.584185 ATGTTACCTCCAAATGTTAACACC 57.416 37.500 11.22 0.00 0.00 4.16
484 873 5.697067 TGTTACCTCCAAATGTTAACACCT 58.303 37.500 11.22 0.00 0.00 4.00
485 874 6.839454 TGTTACCTCCAAATGTTAACACCTA 58.161 36.000 11.22 0.00 0.00 3.08
486 875 7.463431 TGTTACCTCCAAATGTTAACACCTAT 58.537 34.615 11.22 0.00 0.00 2.57
487 876 7.945664 TGTTACCTCCAAATGTTAACACCTATT 59.054 33.333 11.22 0.00 0.00 1.73
488 877 8.799367 GTTACCTCCAAATGTTAACACCTATTT 58.201 33.333 11.22 4.76 0.00 1.40
489 878 7.849322 ACCTCCAAATGTTAACACCTATTTT 57.151 32.000 11.22 4.37 0.00 1.82
490 879 8.257602 ACCTCCAAATGTTAACACCTATTTTT 57.742 30.769 11.22 3.62 0.00 1.94
491 880 9.369672 ACCTCCAAATGTTAACACCTATTTTTA 57.630 29.630 11.22 0.00 0.00 1.52
512 901 1.588674 TTTTTCACCGACGATGCACT 58.411 45.000 0.00 0.00 0.00 4.40
513 902 1.588674 TTTTCACCGACGATGCACTT 58.411 45.000 0.00 0.00 0.00 3.16
514 903 1.588674 TTTCACCGACGATGCACTTT 58.411 45.000 0.00 0.00 0.00 2.66
515 904 1.588674 TTCACCGACGATGCACTTTT 58.411 45.000 0.00 0.00 0.00 2.27
516 905 1.144969 TCACCGACGATGCACTTTTC 58.855 50.000 0.00 0.00 0.00 2.29
517 906 0.865111 CACCGACGATGCACTTTTCA 59.135 50.000 0.00 0.00 0.00 2.69
518 907 1.464608 CACCGACGATGCACTTTTCAT 59.535 47.619 0.00 0.00 0.00 2.57
519 908 1.464608 ACCGACGATGCACTTTTCATG 59.535 47.619 0.00 0.00 0.00 3.07
520 909 1.464608 CCGACGATGCACTTTTCATGT 59.535 47.619 0.00 0.00 0.00 3.21
521 910 2.498905 CGACGATGCACTTTTCATGTG 58.501 47.619 0.00 0.00 38.36 3.21
522 911 2.157474 CGACGATGCACTTTTCATGTGA 59.843 45.455 0.00 0.00 37.60 3.58
523 912 3.363871 CGACGATGCACTTTTCATGTGAA 60.364 43.478 0.00 0.00 37.60 3.18
524 913 4.536065 GACGATGCACTTTTCATGTGAAA 58.464 39.130 4.16 4.16 41.77 2.69
536 925 7.606858 TTTTCATGTGAAAATTGTCAAGCAA 57.393 28.000 14.95 0.00 45.76 3.91
537 926 6.831727 TTCATGTGAAAATTGTCAAGCAAG 57.168 33.333 0.00 0.00 40.86 4.01
538 927 4.746115 TCATGTGAAAATTGTCAAGCAAGC 59.254 37.500 0.00 0.00 40.86 4.01
539 928 4.389890 TGTGAAAATTGTCAAGCAAGCT 57.610 36.364 0.00 0.00 40.86 3.74
540 929 4.757594 TGTGAAAATTGTCAAGCAAGCTT 58.242 34.783 0.00 0.59 40.86 3.74
552 941 5.168526 CAAGCAAGCTTGTTACACTAACA 57.831 39.130 26.55 0.00 45.91 2.41
565 954 7.728148 TGTTACACTAACAAGAACATCTACCA 58.272 34.615 0.00 0.00 44.95 3.25
566 955 8.205512 TGTTACACTAACAAGAACATCTACCAA 58.794 33.333 0.00 0.00 44.95 3.67
567 956 9.048446 GTTACACTAACAAGAACATCTACCAAA 57.952 33.333 0.00 0.00 38.52 3.28
568 957 9.616156 TTACACTAACAAGAACATCTACCAAAA 57.384 29.630 0.00 0.00 0.00 2.44
569 958 8.514330 ACACTAACAAGAACATCTACCAAAAA 57.486 30.769 0.00 0.00 0.00 1.94
628 1017 9.628746 TTTAAATTAACCGTTTTCATTAGGAGC 57.371 29.630 0.00 0.00 0.00 4.70
629 1018 6.827586 AATTAACCGTTTTCATTAGGAGCA 57.172 33.333 0.00 0.00 0.00 4.26
630 1019 7.404671 AATTAACCGTTTTCATTAGGAGCAT 57.595 32.000 0.00 0.00 0.00 3.79
631 1020 8.514330 AATTAACCGTTTTCATTAGGAGCATA 57.486 30.769 0.00 0.00 0.00 3.14
632 1021 8.691661 ATTAACCGTTTTCATTAGGAGCATAT 57.308 30.769 0.00 0.00 0.00 1.78
633 1022 9.787435 ATTAACCGTTTTCATTAGGAGCATATA 57.213 29.630 0.00 0.00 0.00 0.86
634 1023 9.787435 TTAACCGTTTTCATTAGGAGCATATAT 57.213 29.630 0.00 0.00 0.00 0.86
635 1024 7.672983 ACCGTTTTCATTAGGAGCATATATG 57.327 36.000 8.45 8.45 0.00 1.78
657 1046 2.358619 CCAAAATGGCCCTCCCGA 59.641 61.111 0.00 0.00 35.87 5.14
658 1047 2.052104 CCAAAATGGCCCTCCCGAC 61.052 63.158 0.00 0.00 35.87 4.79
659 1048 2.052104 CAAAATGGCCCTCCCGACC 61.052 63.158 0.00 0.00 35.87 4.79
660 1049 3.296842 AAAATGGCCCTCCCGACCC 62.297 63.158 0.00 0.00 35.87 4.46
661 1050 4.760220 AATGGCCCTCCCGACCCT 62.760 66.667 0.00 0.00 35.87 4.34
666 1055 4.753662 CCCTCCCGACCCTGACGA 62.754 72.222 0.00 0.00 0.00 4.20
667 1056 3.450115 CCTCCCGACCCTGACGAC 61.450 72.222 0.00 0.00 0.00 4.34
668 1057 3.450115 CTCCCGACCCTGACGACC 61.450 72.222 0.00 0.00 0.00 4.79
669 1058 3.940506 CTCCCGACCCTGACGACCT 62.941 68.421 0.00 0.00 0.00 3.85
670 1059 2.995574 CCCGACCCTGACGACCTT 60.996 66.667 0.00 0.00 0.00 3.50
671 1060 2.572284 CCGACCCTGACGACCTTC 59.428 66.667 0.00 0.00 0.00 3.46
672 1061 1.977544 CCGACCCTGACGACCTTCT 60.978 63.158 0.00 0.00 0.00 2.85
673 1062 1.533469 CCGACCCTGACGACCTTCTT 61.533 60.000 0.00 0.00 0.00 2.52
674 1063 0.109226 CGACCCTGACGACCTTCTTC 60.109 60.000 0.00 0.00 0.00 2.87
675 1064 0.246910 GACCCTGACGACCTTCTTCC 59.753 60.000 0.00 0.00 0.00 3.46
676 1065 0.178929 ACCCTGACGACCTTCTTCCT 60.179 55.000 0.00 0.00 0.00 3.36
677 1066 0.533032 CCCTGACGACCTTCTTCCTC 59.467 60.000 0.00 0.00 0.00 3.71
678 1067 1.551452 CCTGACGACCTTCTTCCTCT 58.449 55.000 0.00 0.00 0.00 3.69
679 1068 1.896465 CCTGACGACCTTCTTCCTCTT 59.104 52.381 0.00 0.00 0.00 2.85
680 1069 2.094442 CCTGACGACCTTCTTCCTCTTC 60.094 54.545 0.00 0.00 0.00 2.87
681 1070 1.893801 TGACGACCTTCTTCCTCTTCC 59.106 52.381 0.00 0.00 0.00 3.46
682 1071 2.172679 GACGACCTTCTTCCTCTTCCT 58.827 52.381 0.00 0.00 0.00 3.36
683 1072 2.563620 GACGACCTTCTTCCTCTTCCTT 59.436 50.000 0.00 0.00 0.00 3.36
684 1073 2.300437 ACGACCTTCTTCCTCTTCCTTG 59.700 50.000 0.00 0.00 0.00 3.61
704 1093 1.052124 TGAACTGAACTGGACCGGGT 61.052 55.000 6.32 0.00 0.00 5.28
705 1094 0.320508 GAACTGAACTGGACCGGGTC 60.321 60.000 19.06 19.06 0.00 4.46
706 1095 2.095978 AACTGAACTGGACCGGGTCG 62.096 60.000 20.35 10.66 32.65 4.79
707 1096 2.203523 TGAACTGGACCGGGTCGA 60.204 61.111 20.35 16.01 32.65 4.20
711 1100 3.812019 CTGGACCGGGTCGAGTCG 61.812 72.222 25.80 6.09 34.49 4.18
749 1151 2.438434 AAATGGGCCGGAGAAGCG 60.438 61.111 5.05 0.00 0.00 4.68
765 1167 2.770048 CGGGCCCAGAGGAAGGAT 60.770 66.667 24.92 0.00 33.47 3.24
785 1187 5.011533 AGGATGGAAGTTATCTCATCTTCGG 59.988 44.000 0.00 0.00 38.58 4.30
786 1188 4.060038 TGGAAGTTATCTCATCTTCGGC 57.940 45.455 0.00 0.00 38.58 5.54
787 1189 3.053455 GGAAGTTATCTCATCTTCGGCG 58.947 50.000 0.00 0.00 38.58 6.46
788 1190 3.243434 GGAAGTTATCTCATCTTCGGCGA 60.243 47.826 4.99 4.99 38.58 5.54
789 1191 3.634568 AGTTATCTCATCTTCGGCGAG 57.365 47.619 10.46 4.79 0.00 5.03
1023 1425 2.665000 CAGCCGACAGTGGTGGAT 59.335 61.111 7.07 0.00 0.00 3.41
1298 1700 5.125356 TGTCATCAAGCAAGGGTATGTATG 58.875 41.667 0.00 0.00 0.00 2.39
1299 1701 4.023707 GTCATCAAGCAAGGGTATGTATGC 60.024 45.833 0.00 0.00 39.06 3.14
1309 1711 4.097418 AGGGTATGTATGCATCTACTCCC 58.903 47.826 0.19 11.50 36.58 4.30
1312 1714 5.423015 GGTATGTATGCATCTACTCCCATG 58.577 45.833 0.19 0.00 36.58 3.66
1314 1716 4.607293 TGTATGCATCTACTCCCATGTC 57.393 45.455 0.19 0.00 0.00 3.06
1316 1718 5.393866 TGTATGCATCTACTCCCATGTCTA 58.606 41.667 0.19 0.00 0.00 2.59
1317 1719 5.838521 TGTATGCATCTACTCCCATGTCTAA 59.161 40.000 0.19 0.00 0.00 2.10
1318 1720 6.498303 TGTATGCATCTACTCCCATGTCTAAT 59.502 38.462 0.19 0.00 0.00 1.73
1396 1833 8.937884 CAACCATTAGATTTGATTGATTTTGCA 58.062 29.630 0.00 0.00 0.00 4.08
1408 1845 4.177165 TGATTTTGCACAACCTAGCATG 57.823 40.909 0.00 0.00 40.94 4.06
1440 1877 7.506114 ACCAGTCTCACTTAATTCAGTTTGTA 58.494 34.615 0.00 0.00 0.00 2.41
1459 1896 5.347620 TGTACCAATTGACGCCTAGTAAT 57.652 39.130 7.12 0.00 0.00 1.89
1496 1933 7.060383 TCTTCTTCTTGTGAATGTCTCTCTT 57.940 36.000 0.00 0.00 0.00 2.85
1500 1937 7.151308 TCTTCTTGTGAATGTCTCTCTTTCTC 58.849 38.462 0.00 0.00 33.25 2.87
1501 1938 6.662865 TCTTGTGAATGTCTCTCTTTCTCT 57.337 37.500 0.00 0.00 33.25 3.10
1775 2212 1.179152 TCGAGCGTCTTGGGATTACA 58.821 50.000 0.00 0.00 0.00 2.41
1781 2218 3.452627 AGCGTCTTGGGATTACATCTTCT 59.547 43.478 0.00 0.00 0.00 2.85
1878 2316 7.136289 CAAATCATTTTGTTCCCTTCCATTG 57.864 36.000 0.00 0.00 37.92 2.82
1894 2332 3.624777 CCATTGGATGGCATATACTCCC 58.375 50.000 0.00 0.00 44.70 4.30
1895 2333 3.267812 CCATTGGATGGCATATACTCCCT 59.732 47.826 0.00 0.00 44.70 4.20
1896 2334 4.521146 CATTGGATGGCATATACTCCCTC 58.479 47.826 0.00 0.00 0.00 4.30
1897 2335 2.551270 TGGATGGCATATACTCCCTCC 58.449 52.381 0.00 8.57 37.58 4.30
1898 2336 1.482593 GGATGGCATATACTCCCTCCG 59.517 57.143 0.00 0.00 29.61 4.63
1899 2337 2.180276 GATGGCATATACTCCCTCCGT 58.820 52.381 0.00 0.00 0.00 4.69
1900 2338 2.097110 TGGCATATACTCCCTCCGTT 57.903 50.000 0.00 0.00 0.00 4.44
1901 2339 1.968493 TGGCATATACTCCCTCCGTTC 59.032 52.381 0.00 0.00 0.00 3.95
1902 2340 1.275573 GGCATATACTCCCTCCGTTCC 59.724 57.143 0.00 0.00 0.00 3.62
1903 2341 2.249139 GCATATACTCCCTCCGTTCCT 58.751 52.381 0.00 0.00 0.00 3.36
1904 2342 3.428532 GCATATACTCCCTCCGTTCCTA 58.571 50.000 0.00 0.00 0.00 2.94
1905 2343 3.830755 GCATATACTCCCTCCGTTCCTAA 59.169 47.826 0.00 0.00 0.00 2.69
1906 2344 4.282703 GCATATACTCCCTCCGTTCCTAAA 59.717 45.833 0.00 0.00 0.00 1.85
1907 2345 5.046520 GCATATACTCCCTCCGTTCCTAAAT 60.047 44.000 0.00 0.00 0.00 1.40
1908 2346 6.154021 GCATATACTCCCTCCGTTCCTAAATA 59.846 42.308 0.00 0.00 0.00 1.40
1909 2347 7.310237 GCATATACTCCCTCCGTTCCTAAATAA 60.310 40.741 0.00 0.00 0.00 1.40
1910 2348 8.759782 CATATACTCCCTCCGTTCCTAAATAAT 58.240 37.037 0.00 0.00 0.00 1.28
1911 2349 5.970501 ACTCCCTCCGTTCCTAAATAATT 57.029 39.130 0.00 0.00 0.00 1.40
1912 2350 5.681639 ACTCCCTCCGTTCCTAAATAATTG 58.318 41.667 0.00 0.00 0.00 2.32
1913 2351 5.191124 ACTCCCTCCGTTCCTAAATAATTGT 59.809 40.000 0.00 0.00 0.00 2.71
1914 2352 5.677567 TCCCTCCGTTCCTAAATAATTGTC 58.322 41.667 0.00 0.00 0.00 3.18
1915 2353 5.427481 TCCCTCCGTTCCTAAATAATTGTCT 59.573 40.000 0.00 0.00 0.00 3.41
1916 2354 6.069847 TCCCTCCGTTCCTAAATAATTGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
1917 2355 6.602009 CCCTCCGTTCCTAAATAATTGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
1918 2356 7.201705 CCCTCCGTTCCTAAATAATTGTCTTTC 60.202 40.741 0.00 0.00 0.00 2.62
1919 2357 7.553044 CCTCCGTTCCTAAATAATTGTCTTTCT 59.447 37.037 0.00 0.00 0.00 2.52
1920 2358 9.595823 CTCCGTTCCTAAATAATTGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
1921 2359 9.595823 TCCGTTCCTAAATAATTGTCTTTCTAG 57.404 33.333 0.00 0.00 0.00 2.43
1922 2360 9.595823 CCGTTCCTAAATAATTGTCTTTCTAGA 57.404 33.333 0.00 0.00 0.00 2.43
1937 2375 9.559732 TGTCTTTCTAGAGATTTCAACAAATGA 57.440 29.630 0.00 0.00 31.94 2.57
1938 2376 9.818796 GTCTTTCTAGAGATTTCAACAAATGAC 57.181 33.333 0.00 0.00 37.92 3.06
1939 2377 9.784531 TCTTTCTAGAGATTTCAACAAATGACT 57.215 29.630 0.00 0.00 37.92 3.41
1942 2380 9.996554 TTCTAGAGATTTCAACAAATGACTACA 57.003 29.630 0.00 0.00 37.92 2.74
1946 2384 8.873830 AGAGATTTCAACAAATGACTACATACG 58.126 33.333 0.00 0.00 37.92 3.06
1947 2385 7.974675 AGATTTCAACAAATGACTACATACGG 58.025 34.615 0.00 0.00 37.92 4.02
1948 2386 7.822334 AGATTTCAACAAATGACTACATACGGA 59.178 33.333 0.00 0.00 37.92 4.69
1949 2387 6.961359 TTCAACAAATGACTACATACGGAG 57.039 37.500 0.00 0.00 37.92 4.63
1950 2388 6.032956 TCAACAAATGACTACATACGGAGT 57.967 37.500 0.00 0.00 37.64 3.85
1951 2389 7.160547 TCAACAAATGACTACATACGGAGTA 57.839 36.000 0.00 0.00 39.62 2.59
1952 2390 7.604549 TCAACAAATGACTACATACGGAGTAA 58.395 34.615 0.00 0.00 39.00 2.24
1953 2391 8.089597 TCAACAAATGACTACATACGGAGTAAA 58.910 33.333 0.00 0.00 39.00 2.01
1968 2406 6.931838 ACGGAGTAAAATGAGTGAATCTACA 58.068 36.000 0.00 0.00 41.94 2.74
1969 2407 6.812160 ACGGAGTAAAATGAGTGAATCTACAC 59.188 38.462 0.00 0.00 41.94 2.90
1981 2419 6.746120 AGTGAATCTACACTCTAAAACGTGT 58.254 36.000 0.00 0.00 46.36 4.49
1982 2420 6.862090 AGTGAATCTACACTCTAAAACGTGTC 59.138 38.462 0.00 0.00 46.36 3.67
1983 2421 6.862090 GTGAATCTACACTCTAAAACGTGTCT 59.138 38.462 0.00 0.00 42.84 3.41
1984 2422 8.019669 GTGAATCTACACTCTAAAACGTGTCTA 58.980 37.037 0.00 0.00 42.84 2.59
1985 2423 8.019669 TGAATCTACACTCTAAAACGTGTCTAC 58.980 37.037 0.00 0.00 42.84 2.59
1986 2424 6.866010 TCTACACTCTAAAACGTGTCTACA 57.134 37.500 0.00 0.00 42.84 2.74
1987 2425 7.444629 TCTACACTCTAAAACGTGTCTACAT 57.555 36.000 0.00 0.00 42.84 2.29
1988 2426 8.552083 TCTACACTCTAAAACGTGTCTACATA 57.448 34.615 0.00 0.00 42.84 2.29
1989 2427 8.446273 TCTACACTCTAAAACGTGTCTACATAC 58.554 37.037 0.00 0.00 42.84 2.39
1990 2428 6.973843 ACACTCTAAAACGTGTCTACATACA 58.026 36.000 0.00 0.00 40.06 2.29
1991 2429 7.600065 ACACTCTAAAACGTGTCTACATACAT 58.400 34.615 0.00 0.00 40.06 2.29
1992 2430 7.754027 ACACTCTAAAACGTGTCTACATACATC 59.246 37.037 0.00 0.00 40.06 3.06
1993 2431 7.220300 CACTCTAAAACGTGTCTACATACATCC 59.780 40.741 0.00 0.00 0.00 3.51
1994 2432 6.260377 TCTAAAACGTGTCTACATACATCCG 58.740 40.000 0.00 0.00 0.00 4.18
1995 2433 4.445452 AAACGTGTCTACATACATCCGT 57.555 40.909 0.00 0.00 34.68 4.69
1996 2434 5.565592 AAACGTGTCTACATACATCCGTA 57.434 39.130 0.00 0.00 32.82 4.02
1997 2435 5.762825 AACGTGTCTACATACATCCGTAT 57.237 39.130 0.00 0.00 38.96 3.06
2008 2446 5.838529 CATACATCCGTATGTTGTAGTCCA 58.161 41.667 0.00 0.00 46.70 4.02
2009 2447 6.455647 CATACATCCGTATGTTGTAGTCCAT 58.544 40.000 0.00 0.00 46.70 3.41
2010 2448 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
2011 2449 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
2012 2450 5.584649 ACATCCGTATGTTGTAGTCCATTTG 59.415 40.000 0.00 0.00 44.07 2.32
2013 2451 5.408880 TCCGTATGTTGTAGTCCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
2014 2452 5.416083 TCCGTATGTTGTAGTCCATTTGAG 58.584 41.667 0.00 0.00 0.00 3.02
2015 2453 5.186215 TCCGTATGTTGTAGTCCATTTGAGA 59.814 40.000 0.00 0.00 0.00 3.27
2016 2454 6.049149 CCGTATGTTGTAGTCCATTTGAGAT 58.951 40.000 0.00 0.00 0.00 2.75
2017 2455 6.018751 CCGTATGTTGTAGTCCATTTGAGATG 60.019 42.308 0.00 0.00 0.00 2.90
2018 2456 6.018751 CGTATGTTGTAGTCCATTTGAGATGG 60.019 42.308 0.00 0.00 40.48 3.51
2019 2457 5.241403 TGTTGTAGTCCATTTGAGATGGT 57.759 39.130 1.63 0.00 40.06 3.55
2020 2458 5.630121 TGTTGTAGTCCATTTGAGATGGTT 58.370 37.500 1.63 0.00 40.06 3.67
2021 2459 6.774673 TGTTGTAGTCCATTTGAGATGGTTA 58.225 36.000 1.63 0.00 40.06 2.85
2022 2460 6.878923 TGTTGTAGTCCATTTGAGATGGTTAG 59.121 38.462 1.63 0.00 40.06 2.34
2023 2461 6.867519 TGTAGTCCATTTGAGATGGTTAGA 57.132 37.500 1.63 0.00 40.06 2.10
2024 2462 7.252612 TGTAGTCCATTTGAGATGGTTAGAA 57.747 36.000 1.63 0.00 40.06 2.10
2025 2463 7.685481 TGTAGTCCATTTGAGATGGTTAGAAA 58.315 34.615 1.63 0.00 40.06 2.52
2026 2464 7.824289 TGTAGTCCATTTGAGATGGTTAGAAAG 59.176 37.037 1.63 0.00 40.06 2.62
2027 2465 7.020827 AGTCCATTTGAGATGGTTAGAAAGA 57.979 36.000 1.63 0.00 40.06 2.52
2028 2466 6.881602 AGTCCATTTGAGATGGTTAGAAAGAC 59.118 38.462 1.63 0.00 40.06 3.01
2029 2467 6.655003 GTCCATTTGAGATGGTTAGAAAGACA 59.345 38.462 1.63 0.00 40.06 3.41
2030 2468 7.174946 GTCCATTTGAGATGGTTAGAAAGACAA 59.825 37.037 1.63 0.00 40.06 3.18
2031 2469 7.890127 TCCATTTGAGATGGTTAGAAAGACAAT 59.110 33.333 1.63 0.00 40.06 2.71
2032 2470 8.526147 CCATTTGAGATGGTTAGAAAGACAATT 58.474 33.333 0.00 0.00 34.56 2.32
2039 2477 8.971073 AGATGGTTAGAAAGACAATTATTTGGG 58.029 33.333 2.66 0.00 37.15 4.12
2040 2478 8.893563 ATGGTTAGAAAGACAATTATTTGGGA 57.106 30.769 2.66 0.00 37.15 4.37
2041 2479 8.713708 TGGTTAGAAAGACAATTATTTGGGAA 57.286 30.769 2.66 0.00 37.15 3.97
2042 2480 8.581578 TGGTTAGAAAGACAATTATTTGGGAAC 58.418 33.333 2.66 0.00 37.15 3.62
2043 2481 7.753580 GGTTAGAAAGACAATTATTTGGGAACG 59.246 37.037 2.66 0.00 37.15 3.95
2044 2482 6.267496 AGAAAGACAATTATTTGGGAACGG 57.733 37.500 2.66 0.00 37.15 4.44
2045 2483 6.007703 AGAAAGACAATTATTTGGGAACGGA 58.992 36.000 2.66 0.00 37.15 4.69
2046 2484 5.897377 AAGACAATTATTTGGGAACGGAG 57.103 39.130 2.66 0.00 37.15 4.63
2047 2485 4.270008 AGACAATTATTTGGGAACGGAGG 58.730 43.478 2.66 0.00 37.15 4.30
2048 2486 3.361786 ACAATTATTTGGGAACGGAGGG 58.638 45.455 2.66 0.00 37.15 4.30
2049 2487 3.010808 ACAATTATTTGGGAACGGAGGGA 59.989 43.478 2.66 0.00 37.15 4.20
2050 2488 3.577805 ATTATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
2051 2489 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2091 2529 4.873746 TTTTAGGACCAGTCTCTCTGTG 57.126 45.455 0.00 0.00 42.19 3.66
2127 2565 5.222151 TGTTCTCTCTTCTCTCCAGGTTCTA 60.222 44.000 0.00 0.00 0.00 2.10
2212 2650 4.588899 TGACAAGGTACATCCAAATCCTG 58.411 43.478 0.00 0.00 39.02 3.86
2242 2680 5.354234 ACCTTCCGATTTGTTGTATCATGAC 59.646 40.000 0.00 0.00 0.00 3.06
2269 2707 6.403866 TTCATGCACATCCTACTTTGTTTT 57.596 33.333 0.00 0.00 0.00 2.43
2557 3180 5.654650 ACAAAACCACAATCCTGTTGTCTAA 59.345 36.000 0.00 0.00 30.44 2.10
2870 3493 2.521105 ACTGTGGTACCTTCGTGTTC 57.479 50.000 14.36 0.00 0.00 3.18
2898 3521 4.988540 TCTTGTTGATACTGTCCAAACTCG 59.011 41.667 0.00 0.00 0.00 4.18
2930 3553 4.114794 GGCATCCATATTTGTGCAACTTC 58.885 43.478 0.00 0.00 39.27 3.01
2949 3572 7.010091 GCAACTTCTTGGAAAAAGAAATCGAAA 59.990 33.333 0.00 0.00 36.01 3.46
3157 3780 5.009610 TGTTTTTGAGGTCCTAATCAAGTGC 59.990 40.000 0.00 0.00 36.81 4.40
3170 3793 6.547141 CCTAATCAAGTGCCATTCCATCTTTA 59.453 38.462 0.00 0.00 0.00 1.85
3335 3962 3.520187 GCCTGTGGCTTTGGATTTG 57.480 52.632 0.73 0.00 46.69 2.32
3336 3963 0.037046 GCCTGTGGCTTTGGATTTGG 60.037 55.000 0.73 0.00 46.69 3.28
3337 3964 1.631405 CCTGTGGCTTTGGATTTGGA 58.369 50.000 0.00 0.00 0.00 3.53
3338 3965 1.547372 CCTGTGGCTTTGGATTTGGAG 59.453 52.381 0.00 0.00 0.00 3.86
3339 3966 2.517959 CTGTGGCTTTGGATTTGGAGA 58.482 47.619 0.00 0.00 0.00 3.71
3340 3967 3.094572 CTGTGGCTTTGGATTTGGAGAT 58.905 45.455 0.00 0.00 0.00 2.75
3341 3968 3.509442 TGTGGCTTTGGATTTGGAGATT 58.491 40.909 0.00 0.00 0.00 2.40
3353 3980 2.996249 TGGAGATTGGAGATGCTGTC 57.004 50.000 0.00 0.00 0.00 3.51
3915 4563 4.184629 GAGTGGCAGTAATACCAACTCTG 58.815 47.826 0.00 0.00 37.79 3.35
4044 4692 2.612672 CAGCATCTAGTGTTGCATCCTG 59.387 50.000 14.39 3.94 40.35 3.86
4270 4918 3.785859 TGGGAGCGAGGCATGGTC 61.786 66.667 0.00 0.22 0.00 4.02
4371 5019 4.556699 CGATTTGAAGGTTTGACTTGTCCC 60.557 45.833 0.00 0.00 0.00 4.46
4372 5020 2.358322 TGAAGGTTTGACTTGTCCCC 57.642 50.000 0.00 0.00 0.00 4.81
4373 5021 1.850345 TGAAGGTTTGACTTGTCCCCT 59.150 47.619 0.00 0.00 0.00 4.79
4374 5022 2.243736 TGAAGGTTTGACTTGTCCCCTT 59.756 45.455 12.89 12.89 35.09 3.95
4421 5069 5.789774 CTGTAAGTTTTGCAATTCACGTC 57.210 39.130 0.00 0.00 0.00 4.34
4451 5099 6.173427 ACAAACAATTAGGTGGCTTTGAAT 57.827 33.333 0.00 0.00 0.00 2.57
4460 5108 2.543641 GTGGCTTTGAATGCTATTGCC 58.456 47.619 3.04 0.00 38.71 4.52
4481 5129 4.260948 GCCATCTTCTTTCGGATCATTCAC 60.261 45.833 0.00 0.00 0.00 3.18
4556 5204 1.174712 TGCCTTTGCTGCCTGAGAAC 61.175 55.000 0.00 0.00 38.71 3.01
4629 5277 5.243507 TGGTTCTGTACATGATGCAAAATGT 59.756 36.000 18.35 18.35 40.13 2.71
4722 5372 4.893424 ATGTATGTATTGTTCGGTTGGC 57.107 40.909 0.00 0.00 0.00 4.52
5043 5697 2.988684 TTGTTGGCGGCCATGGTC 60.989 61.111 24.49 10.70 31.53 4.02
5199 5856 1.078848 GAAGACGAGCAGGTGCCAT 60.079 57.895 0.00 0.00 43.38 4.40
5271 5928 3.431725 GCCACGTACTTGGGCAGC 61.432 66.667 19.17 1.86 46.92 5.25
5310 5967 3.537874 AGCACGTAGGCCGGGATC 61.538 66.667 2.18 0.00 45.03 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.449632 GCACTTAACGCTTTCCCAAAAA 58.550 40.909 0.00 0.00 0.00 1.94
47 48 4.687948 CCTCAAGTAACATCGGATATGCAG 59.312 45.833 0.00 0.00 0.00 4.41
54 55 1.568504 AGCCCTCAAGTAACATCGGA 58.431 50.000 0.00 0.00 0.00 4.55
55 56 3.753294 ATAGCCCTCAAGTAACATCGG 57.247 47.619 0.00 0.00 0.00 4.18
56 57 5.177696 GCTTAATAGCCCTCAAGTAACATCG 59.822 44.000 0.00 0.00 41.74 3.84
93 165 4.223923 AGTGAATTCTTACAGTCTGGGAGG 59.776 45.833 7.05 0.00 0.00 4.30
101 173 6.471146 AGAGATTGCAGTGAATTCTTACAGT 58.529 36.000 7.05 0.00 0.00 3.55
102 174 6.036953 GGAGAGATTGCAGTGAATTCTTACAG 59.963 42.308 7.05 0.00 0.00 2.74
103 175 5.877012 GGAGAGATTGCAGTGAATTCTTACA 59.123 40.000 7.05 0.00 0.00 2.41
104 176 5.877012 TGGAGAGATTGCAGTGAATTCTTAC 59.123 40.000 7.05 0.00 0.00 2.34
106 178 4.914983 TGGAGAGATTGCAGTGAATTCTT 58.085 39.130 7.05 0.00 0.00 2.52
107 179 4.515361 CTGGAGAGATTGCAGTGAATTCT 58.485 43.478 7.05 0.00 40.12 2.40
108 180 4.879104 CTGGAGAGATTGCAGTGAATTC 57.121 45.455 0.00 0.00 40.12 2.17
159 246 3.776340 TGGAACAGAAAAAGGAAAACGC 58.224 40.909 0.00 0.00 0.00 4.84
203 293 3.262660 ACTGATCCTTGATGCTCTGTTCA 59.737 43.478 0.00 0.00 0.00 3.18
226 353 1.202770 AGACCCCAACAGCAGTACAAC 60.203 52.381 0.00 0.00 0.00 3.32
229 356 0.685097 TGAGACCCCAACAGCAGTAC 59.315 55.000 0.00 0.00 0.00 2.73
230 357 1.555075 GATGAGACCCCAACAGCAGTA 59.445 52.381 0.00 0.00 0.00 2.74
232 359 0.617413 AGATGAGACCCCAACAGCAG 59.383 55.000 0.00 0.00 0.00 4.24
233 360 0.615331 GAGATGAGACCCCAACAGCA 59.385 55.000 0.00 0.00 0.00 4.41
234 361 0.908198 AGAGATGAGACCCCAACAGC 59.092 55.000 0.00 0.00 0.00 4.40
235 362 2.182827 TCAGAGATGAGACCCCAACAG 58.817 52.381 0.00 0.00 0.00 3.16
236 363 2.325661 TCAGAGATGAGACCCCAACA 57.674 50.000 0.00 0.00 0.00 3.33
237 364 3.244561 TGTTTCAGAGATGAGACCCCAAC 60.245 47.826 0.00 0.00 0.00 3.77
238 365 2.978978 TGTTTCAGAGATGAGACCCCAA 59.021 45.455 0.00 0.00 0.00 4.12
239 366 2.619931 TGTTTCAGAGATGAGACCCCA 58.380 47.619 0.00 0.00 0.00 4.96
240 367 3.922171 ATGTTTCAGAGATGAGACCCC 57.078 47.619 0.00 0.00 0.00 4.95
241 368 6.173339 TGTAAATGTTTCAGAGATGAGACCC 58.827 40.000 0.00 0.00 0.00 4.46
242 369 7.856145 ATGTAAATGTTTCAGAGATGAGACC 57.144 36.000 0.00 0.00 0.00 3.85
296 423 3.510388 TCTAACTCCGCACTCATCAAG 57.490 47.619 0.00 0.00 0.00 3.02
309 632 2.234908 TCCCTTGCTGCTCTTCTAACTC 59.765 50.000 0.00 0.00 0.00 3.01
315 638 2.422832 CTCATTTCCCTTGCTGCTCTTC 59.577 50.000 0.00 0.00 0.00 2.87
321 644 2.376109 AGCATCTCATTTCCCTTGCTG 58.624 47.619 0.00 0.00 38.87 4.41
324 648 2.758979 AGCAAGCATCTCATTTCCCTTG 59.241 45.455 0.00 0.00 34.40 3.61
329 653 2.031437 GGACGAGCAAGCATCTCATTTC 59.969 50.000 0.00 0.00 0.00 2.17
369 750 2.143122 GAGGTCGTCAGTCAATGCAAA 58.857 47.619 0.00 0.00 0.00 3.68
371 752 0.388520 CGAGGTCGTCAGTCAATGCA 60.389 55.000 0.00 0.00 34.11 3.96
372 753 1.078759 CCGAGGTCGTCAGTCAATGC 61.079 60.000 0.00 0.00 37.74 3.56
390 771 8.531982 ACTTAAGCTTTCCTAAATTGGATTTCC 58.468 33.333 3.20 0.00 35.83 3.13
403 784 8.734386 CACAGATCAAAATACTTAAGCTTTCCT 58.266 33.333 3.20 0.00 0.00 3.36
404 785 7.486232 GCACAGATCAAAATACTTAAGCTTTCC 59.514 37.037 3.20 0.00 0.00 3.13
405 786 8.023128 TGCACAGATCAAAATACTTAAGCTTTC 58.977 33.333 3.20 0.00 0.00 2.62
406 787 7.885297 TGCACAGATCAAAATACTTAAGCTTT 58.115 30.769 3.20 0.05 0.00 3.51
407 788 7.452880 TGCACAGATCAAAATACTTAAGCTT 57.547 32.000 3.48 3.48 0.00 3.74
408 789 7.452880 TTGCACAGATCAAAATACTTAAGCT 57.547 32.000 1.29 0.00 0.00 3.74
409 790 8.519492 TTTTGCACAGATCAAAATACTTAAGC 57.481 30.769 1.29 0.00 38.17 3.09
439 828 5.510323 ACATTTGTCGTTCGACTTGTTTTTC 59.490 36.000 22.49 0.00 36.23 2.29
442 831 4.609691 ACATTTGTCGTTCGACTTGTTT 57.390 36.364 22.49 5.52 36.23 2.83
443 832 4.609691 AACATTTGTCGTTCGACTTGTT 57.390 36.364 22.49 22.36 36.23 2.83
445 834 4.210537 AGGTAACATTTGTCGTTCGACTTG 59.789 41.667 22.49 18.60 41.41 3.16
446 835 4.374399 AGGTAACATTTGTCGTTCGACTT 58.626 39.130 22.49 12.53 41.41 3.01
447 836 3.985925 GAGGTAACATTTGTCGTTCGACT 59.014 43.478 22.49 7.20 41.41 4.18
449 838 3.243805 TGGAGGTAACATTTGTCGTTCGA 60.244 43.478 0.00 0.00 41.41 3.71
452 841 5.300792 ACATTTGGAGGTAACATTTGTCGTT 59.699 36.000 0.00 0.00 41.41 3.85
453 842 4.825085 ACATTTGGAGGTAACATTTGTCGT 59.175 37.500 0.00 0.00 41.41 4.34
454 843 5.371115 ACATTTGGAGGTAACATTTGTCG 57.629 39.130 0.00 0.00 41.41 4.35
455 844 8.138712 TGTTAACATTTGGAGGTAACATTTGTC 58.861 33.333 3.59 0.00 41.41 3.18
456 845 7.923878 GTGTTAACATTTGGAGGTAACATTTGT 59.076 33.333 12.26 0.00 41.41 2.83
457 846 7.383843 GGTGTTAACATTTGGAGGTAACATTTG 59.616 37.037 12.26 0.00 41.41 2.32
458 847 7.289084 AGGTGTTAACATTTGGAGGTAACATTT 59.711 33.333 12.26 0.00 41.41 2.32
459 848 6.780522 AGGTGTTAACATTTGGAGGTAACATT 59.219 34.615 12.26 0.00 41.41 2.71
460 849 6.311735 AGGTGTTAACATTTGGAGGTAACAT 58.688 36.000 12.26 0.00 41.41 2.71
461 850 5.697067 AGGTGTTAACATTTGGAGGTAACA 58.303 37.500 12.26 0.09 41.41 2.41
462 851 7.933215 ATAGGTGTTAACATTTGGAGGTAAC 57.067 36.000 12.26 0.00 0.00 2.50
463 852 8.943594 AAATAGGTGTTAACATTTGGAGGTAA 57.056 30.769 12.26 0.00 0.00 2.85
464 853 8.943594 AAAATAGGTGTTAACATTTGGAGGTA 57.056 30.769 12.26 0.00 0.00 3.08
465 854 7.849322 AAAATAGGTGTTAACATTTGGAGGT 57.151 32.000 12.26 0.00 0.00 3.85
493 882 1.588674 AGTGCATCGTCGGTGAAAAA 58.411 45.000 10.33 0.00 0.00 1.94
494 883 1.588674 AAGTGCATCGTCGGTGAAAA 58.411 45.000 10.33 0.00 0.00 2.29
495 884 1.588674 AAAGTGCATCGTCGGTGAAA 58.411 45.000 10.33 0.00 0.00 2.69
496 885 1.529438 GAAAAGTGCATCGTCGGTGAA 59.471 47.619 10.33 0.00 0.00 3.18
497 886 1.144969 GAAAAGTGCATCGTCGGTGA 58.855 50.000 10.33 0.00 0.00 4.02
498 887 0.865111 TGAAAAGTGCATCGTCGGTG 59.135 50.000 0.00 0.00 0.00 4.94
499 888 1.464608 CATGAAAAGTGCATCGTCGGT 59.535 47.619 0.00 0.00 0.00 4.69
500 889 1.464608 ACATGAAAAGTGCATCGTCGG 59.535 47.619 0.00 0.00 0.00 4.79
501 890 2.157474 TCACATGAAAAGTGCATCGTCG 59.843 45.455 0.00 0.00 36.93 5.12
502 891 3.811722 TCACATGAAAAGTGCATCGTC 57.188 42.857 0.00 0.00 36.93 4.20
503 892 4.566545 TTTCACATGAAAAGTGCATCGT 57.433 36.364 0.00 0.00 40.68 3.73
513 902 6.238157 GCTTGCTTGACAATTTTCACATGAAA 60.238 34.615 0.00 2.89 38.43 2.69
514 903 5.234757 GCTTGCTTGACAATTTTCACATGAA 59.765 36.000 0.00 0.00 37.72 2.57
515 904 4.746115 GCTTGCTTGACAATTTTCACATGA 59.254 37.500 0.00 0.00 37.72 3.07
516 905 4.748102 AGCTTGCTTGACAATTTTCACATG 59.252 37.500 0.00 0.00 37.72 3.21
517 906 4.952460 AGCTTGCTTGACAATTTTCACAT 58.048 34.783 0.00 0.00 37.72 3.21
518 907 4.389890 AGCTTGCTTGACAATTTTCACA 57.610 36.364 0.00 0.00 37.72 3.58
519 908 4.567959 ACAAGCTTGCTTGACAATTTTCAC 59.432 37.500 33.32 0.00 37.72 3.18
520 909 4.757594 ACAAGCTTGCTTGACAATTTTCA 58.242 34.783 33.32 0.00 37.72 2.69
521 910 5.723492 AACAAGCTTGCTTGACAATTTTC 57.277 34.783 33.32 0.00 37.72 2.29
522 911 6.035975 GTGTAACAAGCTTGCTTGACAATTTT 59.964 34.615 33.32 21.02 35.23 1.82
523 912 5.519927 GTGTAACAAGCTTGCTTGACAATTT 59.480 36.000 33.32 21.58 35.23 1.82
524 913 5.043248 GTGTAACAAGCTTGCTTGACAATT 58.957 37.500 33.32 21.87 35.23 2.32
525 914 4.339247 AGTGTAACAAGCTTGCTTGACAAT 59.661 37.500 33.32 25.01 41.43 2.71
526 915 3.694072 AGTGTAACAAGCTTGCTTGACAA 59.306 39.130 33.32 18.75 41.43 3.18
527 916 3.278574 AGTGTAACAAGCTTGCTTGACA 58.721 40.909 33.32 25.81 41.43 3.58
528 917 3.971032 AGTGTAACAAGCTTGCTTGAC 57.029 42.857 33.32 24.01 41.43 3.18
529 918 4.878971 TGTTAGTGTAACAAGCTTGCTTGA 59.121 37.500 33.32 15.44 44.95 3.02
530 919 5.168526 TGTTAGTGTAACAAGCTTGCTTG 57.831 39.130 27.45 27.45 44.95 4.01
540 929 7.728148 TGGTAGATGTTCTTGTTAGTGTAACA 58.272 34.615 0.00 0.00 46.13 2.41
541 930 8.597662 TTGGTAGATGTTCTTGTTAGTGTAAC 57.402 34.615 0.00 0.00 39.11 2.50
542 931 9.616156 TTTTGGTAGATGTTCTTGTTAGTGTAA 57.384 29.630 0.00 0.00 0.00 2.41
543 932 9.616156 TTTTTGGTAGATGTTCTTGTTAGTGTA 57.384 29.630 0.00 0.00 0.00 2.90
544 933 8.514330 TTTTTGGTAGATGTTCTTGTTAGTGT 57.486 30.769 0.00 0.00 0.00 3.55
602 991 9.628746 GCTCCTAATGAAAACGGTTAATTTAAA 57.371 29.630 0.00 0.00 0.00 1.52
603 992 8.794553 TGCTCCTAATGAAAACGGTTAATTTAA 58.205 29.630 0.00 0.00 0.00 1.52
604 993 8.338072 TGCTCCTAATGAAAACGGTTAATTTA 57.662 30.769 0.00 0.00 0.00 1.40
605 994 7.222000 TGCTCCTAATGAAAACGGTTAATTT 57.778 32.000 0.00 0.00 0.00 1.82
606 995 6.827586 TGCTCCTAATGAAAACGGTTAATT 57.172 33.333 0.00 0.00 0.00 1.40
607 996 8.691661 ATATGCTCCTAATGAAAACGGTTAAT 57.308 30.769 0.00 0.00 0.00 1.40
608 997 9.787435 ATATATGCTCCTAATGAAAACGGTTAA 57.213 29.630 0.00 0.00 0.00 2.01
609 998 9.214957 CATATATGCTCCTAATGAAAACGGTTA 57.785 33.333 0.00 0.00 0.00 2.85
610 999 8.099364 CATATATGCTCCTAATGAAAACGGTT 57.901 34.615 0.00 0.00 0.00 4.44
611 1000 7.672983 CATATATGCTCCTAATGAAAACGGT 57.327 36.000 0.00 0.00 0.00 4.83
640 1029 2.052104 GTCGGGAGGGCCATTTTGG 61.052 63.158 6.18 0.00 41.55 3.28
641 1030 2.052104 GGTCGGGAGGGCCATTTTG 61.052 63.158 6.18 0.00 35.15 2.44
642 1031 2.359011 GGTCGGGAGGGCCATTTT 59.641 61.111 6.18 0.00 35.15 1.82
643 1032 3.739613 GGGTCGGGAGGGCCATTT 61.740 66.667 6.18 0.00 35.15 2.32
644 1033 4.760220 AGGGTCGGGAGGGCCATT 62.760 66.667 6.18 0.00 35.15 3.16
649 1038 4.753662 TCGTCAGGGTCGGGAGGG 62.754 72.222 0.00 0.00 0.00 4.30
650 1039 3.450115 GTCGTCAGGGTCGGGAGG 61.450 72.222 0.00 0.00 0.00 4.30
651 1040 3.450115 GGTCGTCAGGGTCGGGAG 61.450 72.222 0.00 0.00 0.00 4.30
652 1041 3.518552 AAGGTCGTCAGGGTCGGGA 62.519 63.158 0.00 0.00 0.00 5.14
653 1042 2.995574 AAGGTCGTCAGGGTCGGG 60.996 66.667 0.00 0.00 0.00 5.14
654 1043 1.533469 AAGAAGGTCGTCAGGGTCGG 61.533 60.000 0.00 0.00 0.00 4.79
655 1044 0.109226 GAAGAAGGTCGTCAGGGTCG 60.109 60.000 0.00 0.00 0.00 4.79
656 1045 0.246910 GGAAGAAGGTCGTCAGGGTC 59.753 60.000 0.00 0.00 0.00 4.46
657 1046 0.178929 AGGAAGAAGGTCGTCAGGGT 60.179 55.000 0.00 0.00 0.00 4.34
658 1047 0.533032 GAGGAAGAAGGTCGTCAGGG 59.467 60.000 0.00 0.00 33.55 4.45
659 1048 1.551452 AGAGGAAGAAGGTCGTCAGG 58.449 55.000 0.00 0.00 35.36 3.86
660 1049 2.094442 GGAAGAGGAAGAAGGTCGTCAG 60.094 54.545 0.00 0.00 35.36 3.51
661 1050 1.893801 GGAAGAGGAAGAAGGTCGTCA 59.106 52.381 0.00 0.00 35.36 4.35
662 1051 2.172679 AGGAAGAGGAAGAAGGTCGTC 58.827 52.381 0.00 0.00 33.53 4.20
663 1052 2.300437 CAAGGAAGAGGAAGAAGGTCGT 59.700 50.000 0.00 0.00 0.00 4.34
664 1053 2.300437 ACAAGGAAGAGGAAGAAGGTCG 59.700 50.000 0.00 0.00 0.00 4.79
665 1054 3.325135 TCACAAGGAAGAGGAAGAAGGTC 59.675 47.826 0.00 0.00 0.00 3.85
666 1055 3.318313 TCACAAGGAAGAGGAAGAAGGT 58.682 45.455 0.00 0.00 0.00 3.50
667 1056 4.068599 GTTCACAAGGAAGAGGAAGAAGG 58.931 47.826 0.00 0.00 35.82 3.46
668 1057 4.754114 CAGTTCACAAGGAAGAGGAAGAAG 59.246 45.833 0.00 0.00 35.82 2.85
669 1058 4.408921 TCAGTTCACAAGGAAGAGGAAGAA 59.591 41.667 0.00 0.00 35.82 2.52
670 1059 3.967326 TCAGTTCACAAGGAAGAGGAAGA 59.033 43.478 0.00 0.00 35.82 2.87
671 1060 4.342862 TCAGTTCACAAGGAAGAGGAAG 57.657 45.455 0.00 0.00 35.82 3.46
672 1061 4.164221 AGTTCAGTTCACAAGGAAGAGGAA 59.836 41.667 0.00 0.00 35.82 3.36
673 1062 3.711704 AGTTCAGTTCACAAGGAAGAGGA 59.288 43.478 0.00 0.00 35.82 3.71
674 1063 3.812053 CAGTTCAGTTCACAAGGAAGAGG 59.188 47.826 0.00 0.00 35.82 3.69
675 1064 3.812053 CCAGTTCAGTTCACAAGGAAGAG 59.188 47.826 0.00 0.00 35.82 2.85
676 1065 3.454447 TCCAGTTCAGTTCACAAGGAAGA 59.546 43.478 0.00 0.00 35.82 2.87
677 1066 3.561725 GTCCAGTTCAGTTCACAAGGAAG 59.438 47.826 0.00 0.00 35.82 3.46
678 1067 3.541632 GTCCAGTTCAGTTCACAAGGAA 58.458 45.455 0.00 0.00 0.00 3.36
679 1068 2.158813 GGTCCAGTTCAGTTCACAAGGA 60.159 50.000 0.00 0.00 0.00 3.36
680 1069 2.222027 GGTCCAGTTCAGTTCACAAGG 58.778 52.381 0.00 0.00 0.00 3.61
681 1070 1.867233 CGGTCCAGTTCAGTTCACAAG 59.133 52.381 0.00 0.00 0.00 3.16
682 1071 1.474320 CCGGTCCAGTTCAGTTCACAA 60.474 52.381 0.00 0.00 0.00 3.33
683 1072 0.105964 CCGGTCCAGTTCAGTTCACA 59.894 55.000 0.00 0.00 0.00 3.58
684 1073 0.602905 CCCGGTCCAGTTCAGTTCAC 60.603 60.000 0.00 0.00 0.00 3.18
723 1118 3.117701 TCTCCGGCCCATTTCATTCATTA 60.118 43.478 0.00 0.00 0.00 1.90
749 1151 2.761465 CCATCCTTCCTCTGGGCCC 61.761 68.421 17.59 17.59 0.00 5.80
765 1167 3.490933 CGCCGAAGATGAGATAACTTCCA 60.491 47.826 0.00 0.00 37.36 3.53
786 1188 4.869440 CTGCTCTGCCTCGCCTCG 62.869 72.222 0.00 0.00 0.00 4.63
787 1189 3.429080 CTCTGCTCTGCCTCGCCTC 62.429 68.421 0.00 0.00 0.00 4.70
788 1190 3.459965 CTCTGCTCTGCCTCGCCT 61.460 66.667 0.00 0.00 0.00 5.52
818 1220 2.687566 GCCGAAGAGGGGAGGGAA 60.688 66.667 0.00 0.00 41.48 3.97
1012 1414 0.110486 GGGTTCACATCCACCACTGT 59.890 55.000 0.00 0.00 34.36 3.55
1014 1416 1.374947 CGGGTTCACATCCACCACT 59.625 57.895 0.00 0.00 34.36 4.00
1248 1650 1.388065 CGAGGGAAGGCGTGATCTCT 61.388 60.000 0.00 0.00 0.00 3.10
1298 1700 5.615289 ACAATTAGACATGGGAGTAGATGC 58.385 41.667 0.00 0.00 0.00 3.91
1299 1701 7.060383 AGACAATTAGACATGGGAGTAGATG 57.940 40.000 0.00 0.00 0.00 2.90
1334 1736 1.340248 GCATCCAATCCAGCCTTCATG 59.660 52.381 0.00 0.00 0.00 3.07
1394 1831 2.691409 TCTACCATGCTAGGTTGTGC 57.309 50.000 5.97 0.00 43.08 4.57
1396 1833 4.957684 GGTATCTACCATGCTAGGTTGT 57.042 45.455 5.97 0.00 45.73 3.32
1408 1845 8.008513 TGAATTAAGTGAGACTGGTATCTACC 57.991 38.462 0.00 0.00 46.62 3.18
1440 1877 3.377172 GCAATTACTAGGCGTCAATTGGT 59.623 43.478 5.42 0.00 38.32 3.67
1459 1896 7.013559 TCACAAGAAGAAGATGAAGAAATGCAA 59.986 33.333 0.00 0.00 0.00 4.08
1496 1933 5.258051 GAGGGAGACTGACTTTCTAGAGAA 58.742 45.833 0.00 0.00 0.00 2.87
1500 1937 3.028130 GGGAGGGAGACTGACTTTCTAG 58.972 54.545 0.00 0.00 0.00 2.43
1501 1938 2.382305 TGGGAGGGAGACTGACTTTCTA 59.618 50.000 0.00 0.00 0.00 2.10
1781 2218 1.833630 GACAGTCTGATCCCCACATCA 59.166 52.381 6.91 0.00 0.00 3.07
1889 2327 5.191124 ACAATTATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
1890 2328 5.681639 ACAATTATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
1891 2329 5.427481 AGACAATTATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1892 2330 5.681639 AGACAATTATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1893 2331 7.553044 AGAAAGACAATTATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
1894 2332 8.494016 AGAAAGACAATTATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
1895 2333 9.595823 CTAGAAAGACAATTATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
1896 2334 9.595823 TCTAGAAAGACAATTATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
1911 2349 9.559732 TCATTTGTTGAAATCTCTAGAAAGACA 57.440 29.630 0.00 0.00 28.65 3.41
1912 2350 9.818796 GTCATTTGTTGAAATCTCTAGAAAGAC 57.181 33.333 0.00 0.00 35.70 3.01
1913 2351 9.784531 AGTCATTTGTTGAAATCTCTAGAAAGA 57.215 29.630 0.00 0.00 35.70 2.52
1916 2354 9.996554 TGTAGTCATTTGTTGAAATCTCTAGAA 57.003 29.630 0.00 0.00 35.70 2.10
1920 2358 8.873830 CGTATGTAGTCATTTGTTGAAATCTCT 58.126 33.333 0.00 0.00 35.70 3.10
1921 2359 8.116753 CCGTATGTAGTCATTTGTTGAAATCTC 58.883 37.037 0.00 0.00 35.70 2.75
1922 2360 7.822334 TCCGTATGTAGTCATTTGTTGAAATCT 59.178 33.333 0.00 0.00 35.70 2.40
1923 2361 7.970384 TCCGTATGTAGTCATTTGTTGAAATC 58.030 34.615 0.00 0.00 35.70 2.17
1924 2362 7.606456 ACTCCGTATGTAGTCATTTGTTGAAAT 59.394 33.333 0.00 0.00 35.70 2.17
1925 2363 6.932400 ACTCCGTATGTAGTCATTTGTTGAAA 59.068 34.615 0.00 0.00 35.70 2.69
1926 2364 6.460781 ACTCCGTATGTAGTCATTTGTTGAA 58.539 36.000 0.00 0.00 35.70 2.69
1927 2365 6.032956 ACTCCGTATGTAGTCATTTGTTGA 57.967 37.500 0.00 0.00 35.70 3.18
1928 2366 7.821595 TTACTCCGTATGTAGTCATTTGTTG 57.178 36.000 0.00 0.00 35.70 3.33
1929 2367 8.836268 TTTTACTCCGTATGTAGTCATTTGTT 57.164 30.769 0.00 0.00 35.70 2.83
1930 2368 8.879759 CATTTTACTCCGTATGTAGTCATTTGT 58.120 33.333 0.00 0.00 35.70 2.83
1931 2369 9.093970 TCATTTTACTCCGTATGTAGTCATTTG 57.906 33.333 0.00 0.00 35.70 2.32
1932 2370 9.314321 CTCATTTTACTCCGTATGTAGTCATTT 57.686 33.333 0.00 0.00 35.70 2.32
1933 2371 8.475639 ACTCATTTTACTCCGTATGTAGTCATT 58.524 33.333 0.00 0.00 35.70 2.57
1934 2372 7.921214 CACTCATTTTACTCCGTATGTAGTCAT 59.079 37.037 0.00 0.00 38.00 3.06
1935 2373 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
1936 2374 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
1937 2375 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
1938 2376 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
1939 2377 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
1940 2378 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
1941 2379 8.969267 GTAGATTCACTCATTTTACTCCGTATG 58.031 37.037 0.00 0.00 0.00 2.39
1942 2380 8.692710 TGTAGATTCACTCATTTTACTCCGTAT 58.307 33.333 0.00 0.00 0.00 3.06
1943 2381 7.972277 GTGTAGATTCACTCATTTTACTCCGTA 59.028 37.037 0.00 0.00 35.68 4.02
1944 2382 6.812160 GTGTAGATTCACTCATTTTACTCCGT 59.188 38.462 0.00 0.00 35.68 4.69
1945 2383 7.036220 AGTGTAGATTCACTCATTTTACTCCG 58.964 38.462 0.00 0.00 44.07 4.63
1967 2405 7.220300 GGATGTATGTAGACACGTTTTAGAGTG 59.780 40.741 0.00 0.00 43.46 3.51
1968 2406 7.256286 GGATGTATGTAGACACGTTTTAGAGT 58.744 38.462 0.00 0.00 30.52 3.24
1969 2407 6.414109 CGGATGTATGTAGACACGTTTTAGAG 59.586 42.308 0.00 0.00 30.52 2.43
1970 2408 6.127925 ACGGATGTATGTAGACACGTTTTAGA 60.128 38.462 0.00 0.00 30.52 2.10
1971 2409 6.032094 ACGGATGTATGTAGACACGTTTTAG 58.968 40.000 0.00 0.00 30.52 1.85
1972 2410 5.953183 ACGGATGTATGTAGACACGTTTTA 58.047 37.500 0.00 0.00 30.52 1.52
1973 2411 4.813027 ACGGATGTATGTAGACACGTTTT 58.187 39.130 0.00 0.00 30.52 2.43
1974 2412 4.445452 ACGGATGTATGTAGACACGTTT 57.555 40.909 0.00 0.00 30.52 3.60
1975 2413 5.762825 ATACGGATGTATGTAGACACGTT 57.237 39.130 0.00 0.00 39.81 3.99
1986 2424 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
1987 2425 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
1989 2427 5.815222 TCAAATGGACTACAACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
1990 2428 5.984725 TCAAATGGACTACAACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
1991 2429 5.186215 TCTCAAATGGACTACAACATACGGA 59.814 40.000 0.00 0.00 0.00 4.69
1992 2430 5.416083 TCTCAAATGGACTACAACATACGG 58.584 41.667 0.00 0.00 0.00 4.02
1993 2431 6.018751 CCATCTCAAATGGACTACAACATACG 60.019 42.308 0.00 0.00 41.64 3.06
1994 2432 6.823689 ACCATCTCAAATGGACTACAACATAC 59.176 38.462 10.91 0.00 41.64 2.39
1995 2433 6.957631 ACCATCTCAAATGGACTACAACATA 58.042 36.000 10.91 0.00 41.64 2.29
1996 2434 5.819991 ACCATCTCAAATGGACTACAACAT 58.180 37.500 10.91 0.00 41.64 2.71
1997 2435 5.241403 ACCATCTCAAATGGACTACAACA 57.759 39.130 10.91 0.00 41.64 3.33
1998 2436 7.103641 TCTAACCATCTCAAATGGACTACAAC 58.896 38.462 10.91 0.00 41.64 3.32
1999 2437 7.252612 TCTAACCATCTCAAATGGACTACAA 57.747 36.000 10.91 0.00 41.64 2.41
2000 2438 6.867519 TCTAACCATCTCAAATGGACTACA 57.132 37.500 10.91 0.00 41.64 2.74
2001 2439 8.041323 TCTTTCTAACCATCTCAAATGGACTAC 58.959 37.037 10.91 0.00 41.64 2.73
2002 2440 8.041323 GTCTTTCTAACCATCTCAAATGGACTA 58.959 37.037 10.91 1.85 41.64 2.59
2003 2441 6.881602 GTCTTTCTAACCATCTCAAATGGACT 59.118 38.462 10.91 0.81 41.64 3.85
2004 2442 6.655003 TGTCTTTCTAACCATCTCAAATGGAC 59.345 38.462 10.91 0.00 41.64 4.02
2005 2443 6.778821 TGTCTTTCTAACCATCTCAAATGGA 58.221 36.000 10.91 0.00 41.64 3.41
2006 2444 7.452880 TTGTCTTTCTAACCATCTCAAATGG 57.547 36.000 2.52 2.52 44.54 3.16
2013 2451 8.971073 CCCAAATAATTGTCTTTCTAACCATCT 58.029 33.333 0.00 0.00 34.60 2.90
2014 2452 8.966868 TCCCAAATAATTGTCTTTCTAACCATC 58.033 33.333 0.00 0.00 34.60 3.51
2015 2453 8.893563 TCCCAAATAATTGTCTTTCTAACCAT 57.106 30.769 0.00 0.00 34.60 3.55
2016 2454 8.581578 GTTCCCAAATAATTGTCTTTCTAACCA 58.418 33.333 0.00 0.00 34.60 3.67
2017 2455 7.753580 CGTTCCCAAATAATTGTCTTTCTAACC 59.246 37.037 0.00 0.00 34.60 2.85
2018 2456 7.753580 CCGTTCCCAAATAATTGTCTTTCTAAC 59.246 37.037 0.00 0.00 34.60 2.34
2019 2457 7.666388 TCCGTTCCCAAATAATTGTCTTTCTAA 59.334 33.333 0.00 0.00 34.60 2.10
2020 2458 7.169591 TCCGTTCCCAAATAATTGTCTTTCTA 58.830 34.615 0.00 0.00 34.60 2.10
2021 2459 6.007703 TCCGTTCCCAAATAATTGTCTTTCT 58.992 36.000 0.00 0.00 34.60 2.52
2022 2460 6.262193 TCCGTTCCCAAATAATTGTCTTTC 57.738 37.500 0.00 0.00 34.60 2.62
2023 2461 5.185056 CCTCCGTTCCCAAATAATTGTCTTT 59.815 40.000 0.00 0.00 34.60 2.52
2024 2462 4.705023 CCTCCGTTCCCAAATAATTGTCTT 59.295 41.667 0.00 0.00 34.60 3.01
2025 2463 4.270008 CCTCCGTTCCCAAATAATTGTCT 58.730 43.478 0.00 0.00 34.60 3.41
2026 2464 3.380320 CCCTCCGTTCCCAAATAATTGTC 59.620 47.826 0.00 0.00 34.60 3.18
2027 2465 3.010808 TCCCTCCGTTCCCAAATAATTGT 59.989 43.478 0.00 0.00 34.60 2.71
2028 2466 3.626930 TCCCTCCGTTCCCAAATAATTG 58.373 45.455 0.00 0.00 36.25 2.32
2029 2467 3.268595 ACTCCCTCCGTTCCCAAATAATT 59.731 43.478 0.00 0.00 0.00 1.40
2030 2468 2.850568 ACTCCCTCCGTTCCCAAATAAT 59.149 45.455 0.00 0.00 0.00 1.28
2031 2469 2.271777 ACTCCCTCCGTTCCCAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2032 2470 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2033 2471 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
2034 2472 1.557832 CATACTCCCTCCGTTCCCAAA 59.442 52.381 0.00 0.00 0.00 3.28
2035 2473 1.200519 CATACTCCCTCCGTTCCCAA 58.799 55.000 0.00 0.00 0.00 4.12
2036 2474 0.042131 ACATACTCCCTCCGTTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
2037 2475 0.751452 GACATACTCCCTCCGTTCCC 59.249 60.000 0.00 0.00 0.00 3.97
2038 2476 0.751452 GGACATACTCCCTCCGTTCC 59.249 60.000 0.00 0.00 31.83 3.62
2081 2519 1.069204 TGAGGCACAACACAGAGAGAC 59.931 52.381 0.00 0.00 0.00 3.36
2091 2529 2.139118 GAGAGAACAGTGAGGCACAAC 58.861 52.381 0.00 0.00 36.74 3.32
2127 2565 0.618458 ACATATCCAACACGGCCTGT 59.382 50.000 0.00 0.95 32.89 4.00
2212 2650 1.534729 ACAAATCGGAAGGTGGAAGC 58.465 50.000 0.00 0.00 0.00 3.86
2242 2680 0.940126 GTAGGATGTGCATGAAGGCG 59.060 55.000 0.00 0.00 36.28 5.52
2269 2707 3.730215 TGGCTGATAAAGTTGGGCTTA 57.270 42.857 0.00 0.00 36.17 3.09
2436 2874 4.836825 AGCATAGCTAAGAAGAAAGTGCA 58.163 39.130 11.53 0.00 36.99 4.57
2973 3596 5.455392 CATGGGAATATCAAAATGAGCGAC 58.545 41.667 0.00 0.00 0.00 5.19
3074 3697 3.873361 GCATCGAAACAGATCCAATCAGA 59.127 43.478 0.00 0.00 0.00 3.27
3192 3819 3.942829 TCAAGAGAGTTCGGCATGAAAT 58.057 40.909 0.00 0.00 38.60 2.17
3335 3962 2.996249 TGACAGCATCTCCAATCTCC 57.004 50.000 0.00 0.00 0.00 3.71
3336 3963 4.989797 CACTATGACAGCATCTCCAATCTC 59.010 45.833 0.00 0.00 35.94 2.75
3337 3964 4.958509 CACTATGACAGCATCTCCAATCT 58.041 43.478 0.00 0.00 35.94 2.40
3762 4410 4.427312 CAATGCTGGGCTTCTGAATTTAC 58.573 43.478 0.00 0.00 0.00 2.01
3763 4411 3.119029 GCAATGCTGGGCTTCTGAATTTA 60.119 43.478 0.00 0.00 0.00 1.40
3915 4563 6.308766 CAGCTGCCAGAAAATGTGTAAATTAC 59.691 38.462 0.00 0.00 0.00 1.89
4044 4692 2.347490 TGCCCTTCTTCCGCAGAC 59.653 61.111 0.00 0.00 0.00 3.51
4270 4918 5.006153 TGGTTGATAGTATCTTCACACGG 57.994 43.478 11.40 0.00 0.00 4.94
4346 4994 5.169836 ACAAGTCAAACCTTCAAATCGAC 57.830 39.130 0.00 0.00 0.00 4.20
4371 5019 7.918536 TGAAGATGATCAGAAAGAAGAAAGG 57.081 36.000 0.09 0.00 0.00 3.11
4372 5020 8.781196 TGTTGAAGATGATCAGAAAGAAGAAAG 58.219 33.333 0.09 0.00 0.00 2.62
4373 5021 8.562892 GTGTTGAAGATGATCAGAAAGAAGAAA 58.437 33.333 0.09 0.00 0.00 2.52
4374 5022 7.935755 AGTGTTGAAGATGATCAGAAAGAAGAA 59.064 33.333 0.09 0.00 0.00 2.52
4421 5069 5.353123 AGCCACCTAATTGTTTGTATACACG 59.647 40.000 4.68 0.00 0.00 4.49
4451 5099 2.945008 CCGAAAGAAGATGGCAATAGCA 59.055 45.455 0.00 0.00 44.61 3.49
4460 5108 5.121811 AGGTGAATGATCCGAAAGAAGATG 58.878 41.667 0.00 0.00 0.00 2.90
4481 5129 6.180771 ACAATTTCTTTGTTTGTTGCAAGG 57.819 33.333 0.00 0.00 46.51 3.61
4556 5204 2.547826 TCGAAGCAGATGAGCATTCTG 58.452 47.619 6.28 6.28 36.85 3.02
4655 5303 2.507407 TCCAAGGCAGGACAATTACC 57.493 50.000 0.00 0.00 31.23 2.85
4722 5372 5.712152 AGATAGCTTGTTGTTTTTCAGGG 57.288 39.130 0.00 0.00 0.00 4.45
4819 5470 2.596862 GTGACGCCAACAAAACAAGAAC 59.403 45.455 0.00 0.00 0.00 3.01
4822 5473 2.559998 AGTGACGCCAACAAAACAAG 57.440 45.000 0.00 0.00 0.00 3.16
4986 5640 1.224039 GAGCCAGAGCAGCATCCTT 59.776 57.895 0.00 0.00 43.56 3.36
5052 5706 2.930562 GTGACCTCCACCCCTGCT 60.931 66.667 0.00 0.00 39.86 4.24
5199 5856 3.311110 GTCTGCACCCCGAGGTCA 61.311 66.667 0.00 0.00 46.45 4.02
5310 5967 0.888619 TCCTCTTCTACTGCGTGGTG 59.111 55.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.