Multiple sequence alignment - TraesCS2B01G559900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G559900 chr2B 100.000 3716 0 0 1 3716 753785212 753788927 0.000000e+00 6863.0
1 TraesCS2B01G559900 chr2B 95.728 2177 91 2 583 2757 753808459 753806283 0.000000e+00 3504.0
2 TraesCS2B01G559900 chr2B 94.197 2137 115 6 901 3030 753930807 753928673 0.000000e+00 3251.0
3 TraesCS2B01G559900 chr2B 94.115 2090 121 2 901 2990 753793306 753795393 0.000000e+00 3177.0
4 TraesCS2B01G559900 chr2B 91.352 636 45 5 2406 3033 753935066 753934433 0.000000e+00 861.0
5 TraesCS2B01G559900 chr2B 96.648 358 5 2 222 572 753809041 753808684 4.130000e-164 588.0
6 TraesCS2B01G559900 chr2B 92.369 249 16 3 3023 3271 753933939 753933694 5.900000e-93 351.0
7 TraesCS2B01G559900 chr2B 91.031 223 14 2 3361 3581 753796176 753796394 2.810000e-76 296.0
8 TraesCS2B01G559900 chr2B 87.903 248 28 2 3023 3270 753795932 753796177 1.310000e-74 291.0
9 TraesCS2B01G559900 chr2B 88.372 215 9 6 3367 3581 753933689 753933491 1.030000e-60 244.0
10 TraesCS2B01G559900 chr2B 81.373 306 32 10 56 345 773349069 773348773 3.730000e-55 226.0
11 TraesCS2B01G559900 chr2B 85.263 190 10 6 706 877 753940055 753939866 2.950000e-41 180.0
12 TraesCS2B01G559900 chr2B 100.000 28 0 0 653 680 753808462 753808435 7.000000e-03 52.8
13 TraesCS2B01G559900 chr2A 92.430 2140 150 6 902 3032 746620886 746623022 0.000000e+00 3044.0
14 TraesCS2B01G559900 chr2A 91.770 1859 150 3 901 2757 748285638 748287495 0.000000e+00 2582.0
15 TraesCS2B01G559900 chr2A 91.578 843 54 7 2199 3033 748209749 748210582 0.000000e+00 1147.0
16 TraesCS2B01G559900 chr2A 93.130 262 15 3 2773 3033 748452780 748452521 7.530000e-102 381.0
17 TraesCS2B01G559900 chr2A 93.130 262 15 3 2773 3033 748464657 748464398 7.530000e-102 381.0
18 TraesCS2B01G559900 chr2A 93.305 239 10 3 3343 3581 748288638 748288870 7.640000e-92 348.0
19 TraesCS2B01G559900 chr2A 89.773 264 18 3 10 273 748199425 748199679 2.770000e-86 329.0
20 TraesCS2B01G559900 chr2A 87.952 249 26 3 3023 3271 748463997 748463753 1.310000e-74 291.0
21 TraesCS2B01G559900 chr2A 83.387 313 41 8 3018 3328 748288350 748288653 2.830000e-71 279.0
22 TraesCS2B01G559900 chr2A 94.536 183 6 2 3361 3543 748451875 748451697 2.830000e-71 279.0
23 TraesCS2B01G559900 chr2A 89.163 203 11 7 3361 3559 746623684 746623879 3.710000e-60 243.0
24 TraesCS2B01G559900 chr2A 95.522 134 6 0 342 475 748199950 748200083 8.080000e-52 215.0
25 TraesCS2B01G559900 chr2A 83.254 209 29 6 616 821 748203393 748203598 1.760000e-43 187.0
26 TraesCS2B01G559900 chr2A 83.684 190 22 4 3031 3212 748210996 748211184 1.770000e-38 171.0
27 TraesCS2B01G559900 chr2A 86.325 117 3 5 3443 3559 748451677 748451574 8.430000e-22 115.0
28 TraesCS2B01G559900 chr2A 94.286 70 4 0 3357 3426 748222675 748222744 1.410000e-19 108.0
29 TraesCS2B01G559900 chr2A 96.721 61 1 1 3210 3270 746623626 746623685 2.360000e-17 100.0
30 TraesCS2B01G559900 chr2A 96.721 61 1 1 3210 3270 748451933 748451874 2.360000e-17 100.0
31 TraesCS2B01G559900 chr2D 92.290 2140 155 4 902 3033 617760604 617762741 0.000000e+00 3029.0
32 TraesCS2B01G559900 chr2D 91.495 2140 172 7 902 3033 617634334 617636471 0.000000e+00 2935.0
33 TraesCS2B01G559900 chr2D 92.504 1881 137 4 902 2779 617539334 617541213 0.000000e+00 2689.0
34 TraesCS2B01G559900 chr2D 91.339 1859 155 5 902 2757 617546949 617548804 0.000000e+00 2536.0
35 TraesCS2B01G559900 chr2D 87.198 414 16 13 10 405 617523150 617523544 1.580000e-118 436.0
36 TraesCS2B01G559900 chr2D 88.393 336 25 8 10 345 617536719 617537040 3.480000e-105 392.0
37 TraesCS2B01G559900 chr2D 94.667 225 8 2 3357 3581 617541571 617541791 2.750000e-91 346.0
38 TraesCS2B01G559900 chr2D 92.760 221 14 2 3023 3243 617763244 617763462 5.990000e-83 318.0
39 TraesCS2B01G559900 chr2D 95.628 183 4 2 3361 3543 617901986 617901808 1.310000e-74 291.0
40 TraesCS2B01G559900 chr2D 88.205 195 18 4 616 808 617538167 617538358 1.040000e-55 228.0
41 TraesCS2B01G559900 chr2D 84.834 211 31 1 2507 2716 617414017 617413807 1.050000e-50 211.0
42 TraesCS2B01G559900 chr2D 85.308 211 22 4 3023 3225 617637106 617637315 3.760000e-50 209.0
43 TraesCS2B01G559900 chr2D 88.701 177 11 4 709 877 617915943 617915768 1.350000e-49 207.0
44 TraesCS2B01G559900 chr2D 88.462 130 3 2 347 476 617537495 617537612 2.990000e-31 147.0
45 TraesCS2B01G559900 chr2D 94.624 93 5 0 709 801 617637378 617637470 1.080000e-30 145.0
46 TraesCS2B01G559900 chr2D 100.000 31 0 0 3396 3426 617763463 617763493 1.440000e-04 58.4
47 TraesCS2B01G559900 chr6D 81.388 317 31 13 47 345 2102720 2102414 2.230000e-57 233.0
48 TraesCS2B01G559900 chr6D 92.157 102 6 2 718 818 379851151 379851251 3.870000e-30 143.0
49 TraesCS2B01G559900 chr6D 90.278 72 6 1 475 546 2101756 2101686 3.950000e-15 93.5
50 TraesCS2B01G559900 chr6B 80.757 317 29 18 47 342 4490740 4491045 6.250000e-53 219.0
51 TraesCS2B01G559900 chr6B 93.269 104 5 2 3577 3679 292983068 292982966 6.430000e-33 152.0
52 TraesCS2B01G559900 chr6B 92.453 106 4 4 718 820 521042384 521042280 8.320000e-32 148.0
53 TraesCS2B01G559900 chr6B 93.069 101 5 2 3574 3673 164810392 164810293 2.990000e-31 147.0
54 TraesCS2B01G559900 chr6B 90.278 72 6 1 475 546 4491759 4491829 3.950000e-15 93.5
55 TraesCS2B01G559900 chr6A 81.046 306 28 14 56 342 796451 796745 2.250000e-52 217.0
56 TraesCS2B01G559900 chr6A 90.278 72 6 1 475 546 797294 797364 3.950000e-15 93.5
57 TraesCS2B01G559900 chr3A 97.802 91 1 1 3576 3666 520438080 520437991 4.970000e-34 156.0
58 TraesCS2B01G559900 chr4D 95.833 96 2 2 3572 3667 16403544 16403451 1.790000e-33 154.0
59 TraesCS2B01G559900 chr4D 95.745 94 4 0 3578 3671 14663809 14663902 6.430000e-33 152.0
60 TraesCS2B01G559900 chr5B 96.739 92 2 1 3579 3670 45261721 45261631 6.430000e-33 152.0
61 TraesCS2B01G559900 chr5B 94.898 98 3 2 3578 3674 676928191 676928095 6.430000e-33 152.0
62 TraesCS2B01G559900 chr5B 89.565 115 6 6 3565 3675 35190810 35190922 1.390000e-29 141.0
63 TraesCS2B01G559900 chr5D 93.939 99 4 2 3574 3671 547528317 547528414 8.320000e-32 148.0
64 TraesCS2B01G559900 chr1D 90.385 104 8 2 712 813 10397507 10397404 6.470000e-28 135.0
65 TraesCS2B01G559900 chr7B 76.027 292 42 13 43 315 593407023 593407305 3.900000e-25 126.0
66 TraesCS2B01G559900 chr7A 80.838 167 18 1 189 341 634900318 634900484 6.520000e-23 119.0
67 TraesCS2B01G559900 chr7A 94.737 38 2 0 503 540 41045483 41045520 4.010000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G559900 chr2B 753785212 753788927 3715 False 6863.000000 6863 100.000000 1 3716 1 chr2B.!!$F1 3715
1 TraesCS2B01G559900 chr2B 753806283 753809041 2758 True 1381.600000 3504 97.458667 222 2757 3 chr2B.!!$R3 2535
2 TraesCS2B01G559900 chr2B 753793306 753796394 3088 False 1254.666667 3177 91.016333 901 3581 3 chr2B.!!$F2 2680
3 TraesCS2B01G559900 chr2B 753928673 753935066 6393 True 1176.750000 3251 91.572500 901 3581 4 chr2B.!!$R4 2680
4 TraesCS2B01G559900 chr2A 746620886 746623879 2993 False 1129.000000 3044 92.771333 902 3559 3 chr2A.!!$F2 2657
5 TraesCS2B01G559900 chr2A 748285638 748288870 3232 False 1069.666667 2582 89.487333 901 3581 3 chr2A.!!$F5 2680
6 TraesCS2B01G559900 chr2A 748209749 748211184 1435 False 659.000000 1147 87.631000 2199 3212 2 chr2A.!!$F4 1013
7 TraesCS2B01G559900 chr2A 748463753 748464657 904 True 336.000000 381 90.541000 2773 3271 2 chr2A.!!$R2 498
8 TraesCS2B01G559900 chr2A 748199425 748203598 4173 False 243.666667 329 89.516333 10 821 3 chr2A.!!$F3 811
9 TraesCS2B01G559900 chr2A 748451574 748452780 1206 True 218.750000 381 92.678000 2773 3559 4 chr2A.!!$R1 786
10 TraesCS2B01G559900 chr2D 617546949 617548804 1855 False 2536.000000 2536 91.339000 902 2757 1 chr2D.!!$F2 1855
11 TraesCS2B01G559900 chr2D 617760604 617763493 2889 False 1135.133333 3029 95.016667 902 3426 3 chr2D.!!$F5 2524
12 TraesCS2B01G559900 chr2D 617634334 617637470 3136 False 1096.333333 2935 90.475667 709 3225 3 chr2D.!!$F4 2516
13 TraesCS2B01G559900 chr2D 617536719 617541791 5072 False 760.400000 2689 90.446200 10 3581 5 chr2D.!!$F3 3571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 173 0.687757 ATAACCCAGCGCCTCTCTGA 60.688 55.0 2.29 0.00 33.54 3.27 F
572 4180 1.702182 TGCCAAATGAAGCTGACCAA 58.298 45.0 0.00 0.00 0.00 3.67 F
2195 6942 0.388907 GTGGGCATTGACACATGCAC 60.389 55.0 18.17 16.31 46.70 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2154 6901 3.381272 CCGGTATGCCACTTTCAATCATT 59.619 43.478 0.00 0.00 34.09 2.57 R
2376 7123 0.468029 CAACAGAAGGCACCAACCCT 60.468 55.000 0.00 0.00 0.00 4.34 R
3688 9544 1.002430 TCAATGGCTGAAGCTTCGAGT 59.998 47.619 21.11 2.16 41.70 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.456119 CGATGGGCAGACAAGTCGC 61.456 63.158 7.99 7.99 34.09 5.19
99 100 9.520515 TGCTAGAATATATACTGACATCTCACA 57.479 33.333 0.00 0.00 0.00 3.58
109 110 2.114616 GACATCTCACATCTCCCTGGT 58.885 52.381 0.00 0.00 0.00 4.00
123 124 6.945636 TCTCCCTGGTTTGTTAGAAAGATA 57.054 37.500 0.00 0.00 0.00 1.98
127 128 9.853177 CTCCCTGGTTTGTTAGAAAGATAATAT 57.147 33.333 0.00 0.00 0.00 1.28
140 141 8.985315 AGAAAGATAATATTGCCATGACTTCA 57.015 30.769 0.00 0.00 0.00 3.02
172 173 0.687757 ATAACCCAGCGCCTCTCTGA 60.688 55.000 2.29 0.00 33.54 3.27
173 174 0.687757 TAACCCAGCGCCTCTCTGAT 60.688 55.000 2.29 0.00 33.54 2.90
555 4163 3.002371 CCCCCTTCCTCCTCTTGC 58.998 66.667 0.00 0.00 0.00 4.01
572 4180 1.702182 TGCCAAATGAAGCTGACCAA 58.298 45.000 0.00 0.00 0.00 3.67
573 4181 2.037901 TGCCAAATGAAGCTGACCAAA 58.962 42.857 0.00 0.00 0.00 3.28
574 4182 2.633967 TGCCAAATGAAGCTGACCAAAT 59.366 40.909 0.00 0.00 0.00 2.32
578 4186 4.927425 CCAAATGAAGCTGACCAAATGAAG 59.073 41.667 0.00 0.00 0.00 3.02
581 4189 2.555325 TGAAGCTGACCAAATGAAGCTG 59.445 45.455 0.00 0.00 45.04 4.24
1824 6571 2.649816 AGGAAAGGTAAAGGAGGCACAT 59.350 45.455 0.00 0.00 0.00 3.21
2143 6890 5.294050 GAGAACAGATTCTGCAAAGGAAG 57.706 43.478 13.64 0.00 45.60 3.46
2154 6901 6.599244 ATTCTGCAAAGGAAGAATTCGATACA 59.401 34.615 0.00 0.00 45.48 2.29
2175 6922 4.142403 ACAATGATTGAAAGTGGCATACCG 60.142 41.667 12.80 0.00 39.70 4.02
2192 6939 1.507630 CGGTGGGCATTGACACATG 59.492 57.895 12.12 0.00 39.31 3.21
2195 6942 0.388907 GTGGGCATTGACACATGCAC 60.389 55.000 18.17 16.31 46.70 4.57
2281 7028 8.308931 AGAAATTATGTGCAATGAATGTGAAGT 58.691 29.630 0.00 0.00 0.00 3.01
2371 7118 8.902806 CCAAGGATTTGTTTGCTACTATATCAA 58.097 33.333 0.00 0.00 32.21 2.57
2604 7351 1.312815 AACAGCTGTCAGTTGAAGCC 58.687 50.000 21.95 0.00 37.68 4.35
2711 7460 0.108898 CCTGAGAGTTCGGCTGACAG 60.109 60.000 0.00 0.00 0.00 3.51
2895 7793 5.046950 TCCAAAGTTTGTGGCAAAGTACTTT 60.047 36.000 15.22 15.22 36.55 2.66
2917 7815 4.353777 TGCTACTTGTCTCTGGGAATACT 58.646 43.478 0.00 0.00 0.00 2.12
3022 7925 9.911788 ATTTAATAACTGTGAGATGGTTGATCT 57.088 29.630 0.00 0.00 44.78 2.75
3067 8759 3.737266 CAGAAACATTTGTCATGGTGCAC 59.263 43.478 8.80 8.80 0.00 4.57
3107 8807 7.399523 CGATTACCGTGAAGAAAAATTCTAGG 58.600 38.462 0.00 0.00 39.61 3.02
3137 8870 3.112205 GCGATCTGGGTGCCTCCAT 62.112 63.158 0.00 0.00 36.05 3.41
3164 8898 5.816449 TGCACACATTACACATATTCTGG 57.184 39.130 0.00 0.00 0.00 3.86
3189 8923 2.164422 GTCATGATCGGTCAGTCAGTCA 59.836 50.000 3.97 0.00 37.87 3.41
3194 8928 4.998788 TGATCGGTCAGTCAGTCAAATAG 58.001 43.478 0.00 0.00 0.00 1.73
3213 8947 8.298854 TCAAATAGCAGTACGTGTAAAAGTAGA 58.701 33.333 0.00 0.00 0.00 2.59
3312 9050 2.752354 CCCGACAAAGTATGCATTTCCA 59.248 45.455 3.54 0.00 0.00 3.53
3313 9051 3.192422 CCCGACAAAGTATGCATTTCCAA 59.808 43.478 3.54 0.00 0.00 3.53
3314 9052 4.165779 CCGACAAAGTATGCATTTCCAAC 58.834 43.478 3.54 0.00 0.00 3.77
3315 9053 4.320861 CCGACAAAGTATGCATTTCCAACA 60.321 41.667 3.54 0.00 0.00 3.33
3316 9054 4.853196 CGACAAAGTATGCATTTCCAACAG 59.147 41.667 3.54 0.00 0.00 3.16
3317 9055 5.334802 CGACAAAGTATGCATTTCCAACAGA 60.335 40.000 3.54 0.00 0.00 3.41
3318 9056 6.403866 ACAAAGTATGCATTTCCAACAGAA 57.596 33.333 3.54 0.00 0.00 3.02
3319 9057 6.215845 ACAAAGTATGCATTTCCAACAGAAC 58.784 36.000 3.54 0.00 32.95 3.01
3320 9058 6.183360 ACAAAGTATGCATTTCCAACAGAACA 60.183 34.615 3.54 0.00 32.95 3.18
3321 9059 6.594788 AAGTATGCATTTCCAACAGAACAT 57.405 33.333 3.54 0.00 32.95 2.71
3322 9060 5.957798 AGTATGCATTTCCAACAGAACATG 58.042 37.500 3.54 0.00 32.95 3.21
3323 9061 5.711506 AGTATGCATTTCCAACAGAACATGA 59.288 36.000 3.54 0.00 32.95 3.07
3324 9062 4.508461 TGCATTTCCAACAGAACATGAG 57.492 40.909 0.00 0.00 32.95 2.90
3325 9063 3.248266 GCATTTCCAACAGAACATGAGC 58.752 45.455 0.00 0.00 32.95 4.26
3326 9064 3.057033 GCATTTCCAACAGAACATGAGCT 60.057 43.478 0.00 0.00 32.95 4.09
3327 9065 4.560108 GCATTTCCAACAGAACATGAGCTT 60.560 41.667 0.00 0.00 32.95 3.74
3328 9066 4.572985 TTTCCAACAGAACATGAGCTTG 57.427 40.909 0.00 0.00 32.95 4.01
3329 9067 3.213206 TCCAACAGAACATGAGCTTGT 57.787 42.857 0.00 0.00 0.00 3.16
3330 9068 3.554934 TCCAACAGAACATGAGCTTGTT 58.445 40.909 3.42 3.42 42.37 2.83
3331 9069 3.953612 TCCAACAGAACATGAGCTTGTTT 59.046 39.130 5.30 0.00 39.85 2.83
3332 9070 4.402155 TCCAACAGAACATGAGCTTGTTTT 59.598 37.500 5.30 0.00 39.85 2.43
3333 9071 4.505191 CCAACAGAACATGAGCTTGTTTTG 59.495 41.667 16.31 16.31 43.58 2.44
3334 9072 5.342433 CAACAGAACATGAGCTTGTTTTGA 58.658 37.500 22.02 0.00 41.68 2.69
3335 9073 5.581126 ACAGAACATGAGCTTGTTTTGAA 57.419 34.783 22.02 0.00 41.68 2.69
3336 9074 5.964758 ACAGAACATGAGCTTGTTTTGAAA 58.035 33.333 22.02 0.00 41.68 2.69
3337 9075 6.397272 ACAGAACATGAGCTTGTTTTGAAAA 58.603 32.000 22.02 0.00 41.68 2.29
3338 9076 6.532657 ACAGAACATGAGCTTGTTTTGAAAAG 59.467 34.615 22.02 2.94 41.68 2.27
3339 9077 6.753279 CAGAACATGAGCTTGTTTTGAAAAGA 59.247 34.615 13.83 0.00 41.68 2.52
3340 9078 7.276218 CAGAACATGAGCTTGTTTTGAAAAGAA 59.724 33.333 13.83 0.27 41.68 2.52
3341 9079 7.818930 AGAACATGAGCTTGTTTTGAAAAGAAA 59.181 29.630 5.30 0.00 39.85 2.52
3564 9420 3.330701 AGAAAGGTGAAGTAATCAGGGCA 59.669 43.478 0.00 0.00 39.19 5.36
3569 9425 2.501723 GTGAAGTAATCAGGGCAGGAGA 59.498 50.000 0.00 0.00 39.19 3.71
3581 9437 5.305644 TCAGGGCAGGAGATTATCTTTCTAC 59.694 44.000 0.00 0.00 0.00 2.59
3582 9438 5.306678 CAGGGCAGGAGATTATCTTTCTACT 59.693 44.000 0.00 0.00 34.60 2.57
3583 9439 5.542251 AGGGCAGGAGATTATCTTTCTACTC 59.458 44.000 0.00 0.00 31.78 2.59
3584 9440 5.279758 GGGCAGGAGATTATCTTTCTACTCC 60.280 48.000 0.00 0.00 42.64 3.85
3585 9441 5.279758 GGCAGGAGATTATCTTTCTACTCCC 60.280 48.000 0.00 0.00 43.12 4.30
3588 9444 6.210584 CAGGAGATTATCTTTCTACTCCCTCC 59.789 46.154 0.00 0.00 43.12 4.30
3590 9446 5.707495 AGATTATCTTTCTACTCCCTCCGT 58.293 41.667 0.00 0.00 0.00 4.69
3591 9447 6.137559 AGATTATCTTTCTACTCCCTCCGTT 58.862 40.000 0.00 0.00 0.00 4.44
3592 9448 5.848833 TTATCTTTCTACTCCCTCCGTTC 57.151 43.478 0.00 0.00 0.00 3.95
3593 9449 2.454538 TCTTTCTACTCCCTCCGTTCC 58.545 52.381 0.00 0.00 0.00 3.62
3595 9451 0.329261 TTCTACTCCCTCCGTTCCGA 59.671 55.000 0.00 0.00 0.00 4.55
3596 9452 0.549950 TCTACTCCCTCCGTTCCGAT 59.450 55.000 0.00 0.00 0.00 4.18
3597 9453 1.064166 TCTACTCCCTCCGTTCCGATT 60.064 52.381 0.00 0.00 0.00 3.34
3598 9454 1.755380 CTACTCCCTCCGTTCCGATTT 59.245 52.381 0.00 0.00 0.00 2.17
3599 9455 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
3601 9457 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
3602 9458 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
3604 9460 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.00 46.18 4.18
3605 9461 2.448219 CTCCGTTCCGATTTACTCGTC 58.552 52.381 0.00 0.00 46.18 4.20
3606 9462 1.186030 CCGTTCCGATTTACTCGTCG 58.814 55.000 0.00 0.00 46.18 5.12
3607 9463 1.466360 CCGTTCCGATTTACTCGTCGT 60.466 52.381 0.00 0.00 46.18 4.34
3608 9464 2.223021 CCGTTCCGATTTACTCGTCGTA 60.223 50.000 0.00 0.00 46.18 3.43
3610 9466 3.484229 CGTTCCGATTTACTCGTCGTAGT 60.484 47.826 0.00 0.00 46.18 2.73
3612 9468 4.685169 TCCGATTTACTCGTCGTAGTTT 57.315 40.909 3.29 0.00 46.18 2.66
3613 9469 5.046910 TCCGATTTACTCGTCGTAGTTTT 57.953 39.130 3.29 0.00 46.18 2.43
3614 9470 6.176975 TCCGATTTACTCGTCGTAGTTTTA 57.823 37.500 3.29 0.00 46.18 1.52
3615 9471 6.250819 TCCGATTTACTCGTCGTAGTTTTAG 58.749 40.000 3.29 0.00 46.18 1.85
3616 9472 6.024049 CCGATTTACTCGTCGTAGTTTTAGT 58.976 40.000 3.29 0.00 46.18 2.24
3617 9473 6.524586 CCGATTTACTCGTCGTAGTTTTAGTT 59.475 38.462 3.29 0.00 46.18 2.24
3618 9474 7.253125 CCGATTTACTCGTCGTAGTTTTAGTTC 60.253 40.741 3.29 0.00 46.18 3.01
3619 9475 7.269084 CGATTTACTCGTCGTAGTTTTAGTTCA 59.731 37.037 3.29 0.00 42.56 3.18
3622 9478 8.801715 TTACTCGTCGTAGTTTTAGTTCAAAT 57.198 30.769 3.29 0.00 0.00 2.32
3623 9479 7.704789 ACTCGTCGTAGTTTTAGTTCAAATT 57.295 32.000 0.00 0.00 0.00 1.82
3624 9480 8.134905 ACTCGTCGTAGTTTTAGTTCAAATTT 57.865 30.769 0.00 0.00 0.00 1.82
3625 9481 8.606602 ACTCGTCGTAGTTTTAGTTCAAATTTT 58.393 29.630 0.00 0.00 0.00 1.82
3626 9482 8.756376 TCGTCGTAGTTTTAGTTCAAATTTTG 57.244 30.769 2.59 2.59 0.00 2.44
3628 9484 9.212687 CGTCGTAGTTTTAGTTCAAATTTTGAA 57.787 29.630 18.29 18.29 46.68 2.69
3641 9497 7.743520 TCAAATTTTGAACTAAAACCACGAC 57.256 32.000 9.36 0.00 40.80 4.34
3642 9498 6.469595 TCAAATTTTGAACTAAAACCACGACG 59.530 34.615 9.36 0.00 40.80 5.12
3644 9500 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
3645 9501 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
3646 9502 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
3647 9503 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
3648 9504 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
3649 9505 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
3650 9506 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
3651 9507 5.531634 ACTAAAACCACGACGAGTAAATCA 58.468 37.500 0.00 0.00 0.00 2.57
3652 9508 4.985044 AAAACCACGACGAGTAAATCAG 57.015 40.909 0.00 0.00 0.00 2.90
3653 9509 3.928727 AACCACGACGAGTAAATCAGA 57.071 42.857 0.00 0.00 0.00 3.27
3655 9511 3.572584 ACCACGACGAGTAAATCAGAAC 58.427 45.455 0.00 0.00 0.00 3.01
3656 9512 2.592897 CCACGACGAGTAAATCAGAACG 59.407 50.000 0.00 0.00 0.00 3.95
3657 9513 2.592897 CACGACGAGTAAATCAGAACGG 59.407 50.000 0.00 0.00 0.00 4.44
3658 9514 2.485426 ACGACGAGTAAATCAGAACGGA 59.515 45.455 0.00 0.00 0.00 4.69
3659 9515 3.099362 CGACGAGTAAATCAGAACGGAG 58.901 50.000 0.00 0.00 0.00 4.63
3660 9516 3.436496 GACGAGTAAATCAGAACGGAGG 58.564 50.000 0.00 0.00 0.00 4.30
3661 9517 2.165845 ACGAGTAAATCAGAACGGAGGG 59.834 50.000 0.00 0.00 0.00 4.30
3662 9518 2.426024 CGAGTAAATCAGAACGGAGGGA 59.574 50.000 0.00 0.00 0.00 4.20
3663 9519 3.489398 CGAGTAAATCAGAACGGAGGGAG 60.489 52.174 0.00 0.00 0.00 4.30
3664 9520 3.442076 AGTAAATCAGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
3665 9521 4.607239 AGTAAATCAGAACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
3666 9522 3.889520 AAATCAGAACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
3667 9523 2.526888 ATCAGAACGGAGGGAGTACA 57.473 50.000 0.00 0.00 0.00 2.90
3668 9524 2.297698 TCAGAACGGAGGGAGTACAA 57.702 50.000 0.00 0.00 0.00 2.41
3669 9525 2.816411 TCAGAACGGAGGGAGTACAAT 58.184 47.619 0.00 0.00 0.00 2.71
3670 9526 3.170717 TCAGAACGGAGGGAGTACAATT 58.829 45.455 0.00 0.00 0.00 2.32
3671 9527 3.056107 TCAGAACGGAGGGAGTACAATTG 60.056 47.826 3.24 3.24 0.00 2.32
3672 9528 3.056107 CAGAACGGAGGGAGTACAATTGA 60.056 47.826 13.59 0.00 0.00 2.57
3673 9529 3.775316 AGAACGGAGGGAGTACAATTGAT 59.225 43.478 13.59 0.00 0.00 2.57
3674 9530 3.543680 ACGGAGGGAGTACAATTGATG 57.456 47.619 13.59 0.00 0.00 3.07
3675 9531 3.104512 ACGGAGGGAGTACAATTGATGA 58.895 45.455 13.59 0.00 0.00 2.92
3676 9532 3.517901 ACGGAGGGAGTACAATTGATGAA 59.482 43.478 13.59 0.00 0.00 2.57
3677 9533 4.019681 ACGGAGGGAGTACAATTGATGAAA 60.020 41.667 13.59 0.00 0.00 2.69
3678 9534 4.941263 CGGAGGGAGTACAATTGATGAAAA 59.059 41.667 13.59 0.00 0.00 2.29
3679 9535 5.065218 CGGAGGGAGTACAATTGATGAAAAG 59.935 44.000 13.59 0.00 0.00 2.27
3680 9536 6.180472 GGAGGGAGTACAATTGATGAAAAGA 58.820 40.000 13.59 0.00 0.00 2.52
3681 9537 6.659242 GGAGGGAGTACAATTGATGAAAAGAA 59.341 38.462 13.59 0.00 0.00 2.52
3682 9538 7.340487 GGAGGGAGTACAATTGATGAAAAGAAT 59.660 37.037 13.59 0.00 0.00 2.40
3683 9539 8.655935 AGGGAGTACAATTGATGAAAAGAATT 57.344 30.769 13.59 0.00 0.00 2.17
3684 9540 9.093458 AGGGAGTACAATTGATGAAAAGAATTT 57.907 29.630 13.59 0.00 42.41 1.82
3696 9552 8.656849 TGATGAAAAGAATTTACTACTCGAAGC 58.343 33.333 0.00 0.00 37.28 3.86
3697 9553 8.779354 ATGAAAAGAATTTACTACTCGAAGCT 57.221 30.769 0.00 0.00 37.28 3.74
3698 9554 8.603242 TGAAAAGAATTTACTACTCGAAGCTT 57.397 30.769 0.00 0.00 37.28 3.74
3699 9555 8.709646 TGAAAAGAATTTACTACTCGAAGCTTC 58.290 33.333 16.84 16.84 37.28 3.86
3700 9556 8.603242 AAAAGAATTTACTACTCGAAGCTTCA 57.397 30.769 25.47 12.01 37.28 3.02
3701 9557 7.820044 AAGAATTTACTACTCGAAGCTTCAG 57.180 36.000 25.47 21.47 0.00 3.02
3702 9558 5.808030 AGAATTTACTACTCGAAGCTTCAGC 59.192 40.000 25.47 0.05 42.49 4.26
3703 9559 3.505464 TTACTACTCGAAGCTTCAGCC 57.495 47.619 25.47 0.00 43.38 4.85
3704 9560 1.257743 ACTACTCGAAGCTTCAGCCA 58.742 50.000 25.47 12.04 43.38 4.75
3705 9561 1.827969 ACTACTCGAAGCTTCAGCCAT 59.172 47.619 25.47 8.78 43.38 4.40
3706 9562 2.234908 ACTACTCGAAGCTTCAGCCATT 59.765 45.455 25.47 8.94 43.38 3.16
3707 9563 1.446907 ACTCGAAGCTTCAGCCATTG 58.553 50.000 25.47 7.99 43.38 2.82
3708 9564 1.002430 ACTCGAAGCTTCAGCCATTGA 59.998 47.619 25.47 11.75 43.38 2.57
3709 9565 1.664659 CTCGAAGCTTCAGCCATTGAG 59.335 52.381 25.47 16.85 43.38 3.02
3710 9566 1.002430 TCGAAGCTTCAGCCATTGAGT 59.998 47.619 25.47 0.00 43.38 3.41
3711 9567 1.808945 CGAAGCTTCAGCCATTGAGTT 59.191 47.619 25.47 0.00 43.38 3.01
3712 9568 2.227388 CGAAGCTTCAGCCATTGAGTTT 59.773 45.455 25.47 0.00 43.38 2.66
3713 9569 3.572584 GAAGCTTCAGCCATTGAGTTTG 58.427 45.455 21.67 0.00 43.38 2.93
3714 9570 2.590821 AGCTTCAGCCATTGAGTTTGT 58.409 42.857 0.00 0.00 43.38 2.83
3715 9571 3.754965 AGCTTCAGCCATTGAGTTTGTA 58.245 40.909 0.00 0.00 43.38 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.389817 CGACTTGTCTGCCCATCGAA 60.390 55.000 0.00 0.00 0.00 3.71
2 3 2.456119 GCGACTTGTCTGCCCATCG 61.456 63.158 0.00 0.00 0.00 3.84
3 4 2.456119 CGCGACTTGTCTGCCCATC 61.456 63.158 0.00 0.00 0.00 3.51
5 6 4.680237 CCGCGACTTGTCTGCCCA 62.680 66.667 8.23 0.00 0.00 5.36
6 7 2.573609 ATACCGCGACTTGTCTGCCC 62.574 60.000 8.23 0.00 0.00 5.36
8 9 0.370273 CAATACCGCGACTTGTCTGC 59.630 55.000 8.23 3.91 0.00 4.26
20 21 4.379082 GCAGTGGTTTTACTTCCAATACCG 60.379 45.833 0.00 0.00 33.60 4.02
73 74 9.520515 TGTGAGATGTCAGTATATATTCTAGCA 57.479 33.333 0.00 0.00 31.53 3.49
95 96 3.907474 TCTAACAAACCAGGGAGATGTGA 59.093 43.478 0.00 0.00 0.00 3.58
96 97 4.286297 TCTAACAAACCAGGGAGATGTG 57.714 45.455 0.00 0.00 0.00 3.21
99 100 5.843019 TCTTTCTAACAAACCAGGGAGAT 57.157 39.130 0.00 0.00 0.00 2.75
100 101 5.843019 ATCTTTCTAACAAACCAGGGAGA 57.157 39.130 0.00 0.00 0.00 3.71
123 124 6.832384 ACAGAAGATGAAGTCATGGCAATATT 59.168 34.615 0.00 0.00 36.57 1.28
127 128 4.025040 ACAGAAGATGAAGTCATGGCAA 57.975 40.909 0.00 0.00 36.57 4.52
129 130 4.764172 AGTACAGAAGATGAAGTCATGGC 58.236 43.478 0.00 0.00 36.57 4.40
140 141 5.739358 GCGCTGGGTTATAAGTACAGAAGAT 60.739 44.000 0.00 0.00 0.00 2.40
172 173 0.111061 TGGCAACCTCTGTTCTGCAT 59.889 50.000 0.00 0.00 30.42 3.96
173 174 0.819259 GTGGCAACCTCTGTTCTGCA 60.819 55.000 0.00 0.00 30.42 4.41
555 4163 4.524316 TCATTTGGTCAGCTTCATTTGG 57.476 40.909 0.00 0.00 0.00 3.28
572 4180 4.038271 TCAACCTTCCATCAGCTTCATT 57.962 40.909 0.00 0.00 0.00 2.57
573 4181 3.726557 TCAACCTTCCATCAGCTTCAT 57.273 42.857 0.00 0.00 0.00 2.57
574 4182 3.726557 ATCAACCTTCCATCAGCTTCA 57.273 42.857 0.00 0.00 0.00 3.02
578 4186 3.056322 AGCAAAATCAACCTTCCATCAGC 60.056 43.478 0.00 0.00 0.00 4.26
580 4188 3.896888 ACAGCAAAATCAACCTTCCATCA 59.103 39.130 0.00 0.00 0.00 3.07
581 4189 4.525912 ACAGCAAAATCAACCTTCCATC 57.474 40.909 0.00 0.00 0.00 3.51
1824 6571 7.437713 ACCTAGGATGAAGTCAAACATATCA 57.562 36.000 17.98 0.00 0.00 2.15
2143 6890 7.166473 GCCACTTTCAATCATTGTATCGAATTC 59.834 37.037 0.00 0.00 0.00 2.17
2149 6896 7.141363 GGTATGCCACTTTCAATCATTGTATC 58.859 38.462 0.00 0.00 34.09 2.24
2154 6901 3.381272 CCGGTATGCCACTTTCAATCATT 59.619 43.478 0.00 0.00 34.09 2.57
2175 6922 1.216178 GCATGTGTCAATGCCCACC 59.784 57.895 0.00 0.00 45.93 4.61
2192 6939 4.473477 AGTCCACTAAGAACTATGGTGC 57.527 45.455 0.00 0.00 33.67 5.01
2195 6942 5.245531 TGCAAAGTCCACTAAGAACTATGG 58.754 41.667 0.00 0.00 0.00 2.74
2325 7072 5.091261 TGGCTTCTTCAATTCTCCTAGTC 57.909 43.478 0.00 0.00 0.00 2.59
2376 7123 0.468029 CAACAGAAGGCACCAACCCT 60.468 55.000 0.00 0.00 0.00 4.34
2627 7374 1.437149 TCCCTTCCCCTGAGAAGAGAA 59.563 52.381 2.91 0.00 45.08 2.87
2711 7460 9.274206 AGGAAGTTTCAAGTATACTCTTTCAAC 57.726 33.333 5.70 5.72 0.00 3.18
2895 7793 4.353777 AGTATTCCCAGAGACAAGTAGCA 58.646 43.478 0.00 0.00 0.00 3.49
2904 7802 4.343526 GCTGAGATTGAGTATTCCCAGAGA 59.656 45.833 0.00 0.00 0.00 3.10
2917 7815 4.635324 TGAATGCATAAACGCTGAGATTGA 59.365 37.500 0.00 0.00 0.00 2.57
2954 7852 0.465460 TGTTGCACTCCTTGGTCACC 60.465 55.000 0.00 0.00 0.00 4.02
2996 7894 9.911788 AGATCAACCATCTCACAGTTATTAAAT 57.088 29.630 0.00 0.00 37.24 1.40
3021 7924 5.435291 AGATGAGAATCCCAAAAGCAGTAG 58.565 41.667 0.00 0.00 0.00 2.57
3022 7925 5.045651 TGAGATGAGAATCCCAAAAGCAGTA 60.046 40.000 0.00 0.00 0.00 2.74
3067 8759 2.386661 AATCGCACAACACCCTAGAG 57.613 50.000 0.00 0.00 0.00 2.43
3107 8807 2.161609 CCCAGATCGCACAACCTTTTAC 59.838 50.000 0.00 0.00 0.00 2.01
3137 8870 6.602803 AGAATATGTGTAATGTGTGCATCCAA 59.397 34.615 0.00 0.00 33.50 3.53
3164 8898 2.101415 TGACTGACCGATCATGACCATC 59.899 50.000 0.00 0.00 33.22 3.51
3189 8923 9.298774 GATCTACTTTTACACGTACTGCTATTT 57.701 33.333 0.00 0.00 0.00 1.40
3194 8928 5.648572 AGGATCTACTTTTACACGTACTGC 58.351 41.667 0.00 0.00 0.00 4.40
3213 8947 4.101430 AGCATTGTGTTTCAACCAAAGGAT 59.899 37.500 0.00 0.00 38.97 3.24
3293 9031 4.793071 TGTTGGAAATGCATACTTTGTCG 58.207 39.130 0.00 0.00 0.00 4.35
3312 9050 5.581126 TCAAAACAAGCTCATGTTCTGTT 57.419 34.783 4.30 0.00 42.49 3.16
3313 9051 5.581126 TTCAAAACAAGCTCATGTTCTGT 57.419 34.783 4.30 0.00 42.49 3.41
3314 9052 6.753279 TCTTTTCAAAACAAGCTCATGTTCTG 59.247 34.615 4.30 1.58 42.49 3.02
3315 9053 6.866480 TCTTTTCAAAACAAGCTCATGTTCT 58.134 32.000 4.30 0.00 42.49 3.01
3316 9054 7.524294 TTCTTTTCAAAACAAGCTCATGTTC 57.476 32.000 4.30 0.00 42.49 3.18
3317 9055 7.903995 TTTCTTTTCAAAACAAGCTCATGTT 57.096 28.000 0.00 0.00 45.12 2.71
3318 9056 7.903995 TTTTCTTTTCAAAACAAGCTCATGT 57.096 28.000 0.00 0.00 34.24 3.21
3319 9057 8.658609 TCTTTTTCTTTTCAAAACAAGCTCATG 58.341 29.630 0.00 0.00 0.00 3.07
3320 9058 8.776376 TCTTTTTCTTTTCAAAACAAGCTCAT 57.224 26.923 0.00 0.00 0.00 2.90
3321 9059 8.087750 TCTCTTTTTCTTTTCAAAACAAGCTCA 58.912 29.630 0.00 0.00 0.00 4.26
3322 9060 8.466086 TCTCTTTTTCTTTTCAAAACAAGCTC 57.534 30.769 0.00 0.00 0.00 4.09
3323 9061 8.712363 GTTCTCTTTTTCTTTTCAAAACAAGCT 58.288 29.630 0.00 0.00 0.00 3.74
3324 9062 8.495148 TGTTCTCTTTTTCTTTTCAAAACAAGC 58.505 29.630 0.00 0.00 0.00 4.01
3327 9065 9.703892 TCATGTTCTCTTTTTCTTTTCAAAACA 57.296 25.926 0.00 0.00 0.00 2.83
3329 9067 8.872845 GCTCATGTTCTCTTTTTCTTTTCAAAA 58.127 29.630 0.00 0.00 0.00 2.44
3330 9068 8.253113 AGCTCATGTTCTCTTTTTCTTTTCAAA 58.747 29.630 0.00 0.00 0.00 2.69
3331 9069 7.775120 AGCTCATGTTCTCTTTTTCTTTTCAA 58.225 30.769 0.00 0.00 0.00 2.69
3332 9070 7.338800 AGCTCATGTTCTCTTTTTCTTTTCA 57.661 32.000 0.00 0.00 0.00 2.69
3333 9071 7.380870 GGAAGCTCATGTTCTCTTTTTCTTTTC 59.619 37.037 0.00 0.00 0.00 2.29
3334 9072 7.069208 AGGAAGCTCATGTTCTCTTTTTCTTTT 59.931 33.333 0.00 0.00 0.00 2.27
3335 9073 6.548993 AGGAAGCTCATGTTCTCTTTTTCTTT 59.451 34.615 0.00 0.00 0.00 2.52
3336 9074 6.067350 AGGAAGCTCATGTTCTCTTTTTCTT 58.933 36.000 0.00 0.00 0.00 2.52
3337 9075 5.629125 AGGAAGCTCATGTTCTCTTTTTCT 58.371 37.500 0.00 0.00 0.00 2.52
3338 9076 5.956068 AGGAAGCTCATGTTCTCTTTTTC 57.044 39.130 0.00 0.00 0.00 2.29
3339 9077 6.067350 AGAAGGAAGCTCATGTTCTCTTTTT 58.933 36.000 0.00 0.00 0.00 1.94
3340 9078 5.629125 AGAAGGAAGCTCATGTTCTCTTTT 58.371 37.500 0.00 0.00 0.00 2.27
3341 9079 5.240013 AGAAGGAAGCTCATGTTCTCTTT 57.760 39.130 0.00 0.00 0.00 2.52
3462 9316 7.628234 AGACTTCTCCATTGTTGACAAGATAT 58.372 34.615 2.77 0.00 39.47 1.63
3463 9317 7.009179 AGACTTCTCCATTGTTGACAAGATA 57.991 36.000 2.77 0.00 39.47 1.98
3464 9318 5.874093 AGACTTCTCCATTGTTGACAAGAT 58.126 37.500 2.77 0.00 39.47 2.40
3465 9319 5.296151 AGACTTCTCCATTGTTGACAAGA 57.704 39.130 2.77 0.00 39.47 3.02
3564 9420 6.319715 GGAGGGAGTAGAAAGATAATCTCCT 58.680 44.000 8.56 0.00 40.60 3.69
3569 9425 5.304871 GGAACGGAGGGAGTAGAAAGATAAT 59.695 44.000 0.00 0.00 0.00 1.28
3595 9451 8.801715 TTGAACTAAAACTACGACGAGTAAAT 57.198 30.769 0.00 0.00 34.45 1.40
3596 9452 8.627487 TTTGAACTAAAACTACGACGAGTAAA 57.373 30.769 0.00 0.00 34.45 2.01
3597 9453 8.801715 ATTTGAACTAAAACTACGACGAGTAA 57.198 30.769 0.00 0.00 34.45 2.24
3598 9454 8.801715 AATTTGAACTAAAACTACGACGAGTA 57.198 30.769 0.00 0.00 0.00 2.59
3599 9455 7.704789 AATTTGAACTAAAACTACGACGAGT 57.295 32.000 0.00 0.00 0.00 4.18
3601 9457 8.602328 TCAAAATTTGAACTAAAACTACGACGA 58.398 29.630 5.87 0.00 36.59 4.20
3602 9458 8.756376 TCAAAATTTGAACTAAAACTACGACG 57.244 30.769 5.87 0.00 36.59 5.12
3616 9472 7.008447 CGTCGTGGTTTTAGTTCAAAATTTGAA 59.992 33.333 16.28 16.28 46.68 2.69
3617 9473 6.469595 CGTCGTGGTTTTAGTTCAAAATTTGA 59.530 34.615 4.03 4.03 38.36 2.69
3618 9474 6.469595 TCGTCGTGGTTTTAGTTCAAAATTTG 59.530 34.615 0.00 0.00 38.36 2.32
3619 9475 6.553524 TCGTCGTGGTTTTAGTTCAAAATTT 58.446 32.000 0.00 0.00 38.36 1.82
3622 9478 4.630940 ACTCGTCGTGGTTTTAGTTCAAAA 59.369 37.500 0.00 0.00 33.66 2.44
3623 9479 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
3624 9480 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
3625 9481 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
3626 9482 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
3628 9484 5.531634 TGATTTACTCGTCGTGGTTTTAGT 58.468 37.500 0.00 0.00 0.00 2.24
3629 9485 5.860182 TCTGATTTACTCGTCGTGGTTTTAG 59.140 40.000 0.00 0.00 0.00 1.85
3631 9487 4.624015 TCTGATTTACTCGTCGTGGTTTT 58.376 39.130 0.00 0.00 0.00 2.43
3632 9488 4.247267 TCTGATTTACTCGTCGTGGTTT 57.753 40.909 0.00 0.00 0.00 3.27
3633 9489 3.928727 TCTGATTTACTCGTCGTGGTT 57.071 42.857 0.00 0.00 0.00 3.67
3635 9491 2.592897 CGTTCTGATTTACTCGTCGTGG 59.407 50.000 0.00 0.00 0.00 4.94
3636 9492 2.592897 CCGTTCTGATTTACTCGTCGTG 59.407 50.000 0.00 0.00 0.00 4.35
3638 9494 3.099362 CTCCGTTCTGATTTACTCGTCG 58.901 50.000 0.00 0.00 0.00 5.12
3639 9495 3.436496 CCTCCGTTCTGATTTACTCGTC 58.564 50.000 0.00 0.00 0.00 4.20
3640 9496 2.165845 CCCTCCGTTCTGATTTACTCGT 59.834 50.000 0.00 0.00 0.00 4.18
3641 9497 2.426024 TCCCTCCGTTCTGATTTACTCG 59.574 50.000 0.00 0.00 0.00 4.18
3642 9498 3.447944 ACTCCCTCCGTTCTGATTTACTC 59.552 47.826 0.00 0.00 0.00 2.59
3644 9500 3.889520 ACTCCCTCCGTTCTGATTTAC 57.110 47.619 0.00 0.00 0.00 2.01
3645 9501 4.346730 TGTACTCCCTCCGTTCTGATTTA 58.653 43.478 0.00 0.00 0.00 1.40
3646 9502 3.170717 TGTACTCCCTCCGTTCTGATTT 58.829 45.455 0.00 0.00 0.00 2.17
3647 9503 2.816411 TGTACTCCCTCCGTTCTGATT 58.184 47.619 0.00 0.00 0.00 2.57
3648 9504 2.526888 TGTACTCCCTCCGTTCTGAT 57.473 50.000 0.00 0.00 0.00 2.90
3649 9505 2.297698 TTGTACTCCCTCCGTTCTGA 57.702 50.000 0.00 0.00 0.00 3.27
3650 9506 3.056107 TCAATTGTACTCCCTCCGTTCTG 60.056 47.826 5.13 0.00 0.00 3.02
3651 9507 3.170717 TCAATTGTACTCCCTCCGTTCT 58.829 45.455 5.13 0.00 0.00 3.01
3652 9508 3.604875 TCAATTGTACTCCCTCCGTTC 57.395 47.619 5.13 0.00 0.00 3.95
3653 9509 3.517901 TCATCAATTGTACTCCCTCCGTT 59.482 43.478 5.13 0.00 0.00 4.44
3655 9511 3.819564 TCATCAATTGTACTCCCTCCG 57.180 47.619 5.13 0.00 0.00 4.63
3656 9512 6.180472 TCTTTTCATCAATTGTACTCCCTCC 58.820 40.000 5.13 0.00 0.00 4.30
3657 9513 7.687941 TTCTTTTCATCAATTGTACTCCCTC 57.312 36.000 5.13 0.00 0.00 4.30
3658 9514 8.655935 AATTCTTTTCATCAATTGTACTCCCT 57.344 30.769 5.13 0.00 0.00 4.20
3670 9526 8.656849 GCTTCGAGTAGTAAATTCTTTTCATCA 58.343 33.333 0.00 0.00 0.00 3.07
3671 9527 8.874816 AGCTTCGAGTAGTAAATTCTTTTCATC 58.125 33.333 0.00 0.00 0.00 2.92
3672 9528 8.779354 AGCTTCGAGTAGTAAATTCTTTTCAT 57.221 30.769 0.00 0.00 0.00 2.57
3673 9529 8.603242 AAGCTTCGAGTAGTAAATTCTTTTCA 57.397 30.769 0.00 0.00 0.00 2.69
3674 9530 8.709646 TGAAGCTTCGAGTAGTAAATTCTTTTC 58.290 33.333 21.11 0.00 0.00 2.29
3675 9531 8.603242 TGAAGCTTCGAGTAGTAAATTCTTTT 57.397 30.769 21.11 0.00 0.00 2.27
3676 9532 7.148557 GCTGAAGCTTCGAGTAGTAAATTCTTT 60.149 37.037 21.11 0.00 38.21 2.52
3677 9533 6.311690 GCTGAAGCTTCGAGTAGTAAATTCTT 59.688 38.462 21.11 0.00 38.21 2.52
3678 9534 5.808030 GCTGAAGCTTCGAGTAGTAAATTCT 59.192 40.000 21.11 0.00 38.21 2.40
3679 9535 5.005875 GGCTGAAGCTTCGAGTAGTAAATTC 59.994 44.000 21.11 4.54 41.70 2.17
3680 9536 4.870991 GGCTGAAGCTTCGAGTAGTAAATT 59.129 41.667 21.11 0.00 41.70 1.82
3681 9537 4.081642 TGGCTGAAGCTTCGAGTAGTAAAT 60.082 41.667 21.11 0.00 41.70 1.40
3682 9538 3.257375 TGGCTGAAGCTTCGAGTAGTAAA 59.743 43.478 21.11 0.00 41.70 2.01
3683 9539 2.823747 TGGCTGAAGCTTCGAGTAGTAA 59.176 45.455 21.11 0.39 41.70 2.24
3684 9540 2.443416 TGGCTGAAGCTTCGAGTAGTA 58.557 47.619 21.11 1.14 41.70 1.82
3685 9541 1.257743 TGGCTGAAGCTTCGAGTAGT 58.742 50.000 21.11 0.00 41.70 2.73
3686 9542 2.593346 ATGGCTGAAGCTTCGAGTAG 57.407 50.000 21.11 13.68 41.70 2.57
3687 9543 2.233676 TCAATGGCTGAAGCTTCGAGTA 59.766 45.455 21.11 8.63 41.70 2.59
3688 9544 1.002430 TCAATGGCTGAAGCTTCGAGT 59.998 47.619 21.11 2.16 41.70 4.18
3689 9545 1.664659 CTCAATGGCTGAAGCTTCGAG 59.335 52.381 21.11 18.61 41.70 4.04
3690 9546 1.002430 ACTCAATGGCTGAAGCTTCGA 59.998 47.619 21.11 9.50 41.70 3.71
3691 9547 1.446907 ACTCAATGGCTGAAGCTTCG 58.553 50.000 21.11 16.15 41.70 3.79
3692 9548 3.005155 ACAAACTCAATGGCTGAAGCTTC 59.995 43.478 19.89 19.89 41.70 3.86
3693 9549 2.961062 ACAAACTCAATGGCTGAAGCTT 59.039 40.909 0.00 0.00 41.70 3.74
3694 9550 2.590821 ACAAACTCAATGGCTGAAGCT 58.409 42.857 1.74 0.00 41.70 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.