Multiple sequence alignment - TraesCS2B01G558600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G558600 chr2B 100.000 5508 0 0 1 5508 752830383 752835890 0.000000e+00 10172
1 TraesCS2B01G558600 chr2B 98.542 480 7 0 5029 5508 610114259 610114738 0.000000e+00 848
2 TraesCS2B01G558600 chr2B 92.661 436 31 1 5070 5505 67535977 67536411 1.300000e-175 627
3 TraesCS2B01G558600 chr2D 94.102 4595 207 24 1 4563 617073375 617077937 0.000000e+00 6926
4 TraesCS2B01G558600 chr2A 93.621 1740 86 13 1 1733 747144260 747145981 0.000000e+00 2575
5 TraesCS2B01G558600 chr2A 89.934 1977 154 22 3062 5019 747152483 747154433 0.000000e+00 2507
6 TraesCS2B01G558600 chr2A 89.018 1548 146 13 3034 4576 746980826 746982354 0.000000e+00 1895
7 TraesCS2B01G558600 chr2A 89.542 1224 101 17 641 1851 746977875 746979084 0.000000e+00 1526
8 TraesCS2B01G558600 chr2A 99.584 481 2 0 5028 5508 44393134 44392654 0.000000e+00 878
9 TraesCS2B01G558600 chr2A 86.550 513 66 1 13 525 746977151 746977660 3.730000e-156 562
10 TraesCS2B01G558600 chr2A 77.826 929 123 43 1995 2897 747146602 747147473 1.070000e-136 497
11 TraesCS2B01G558600 chr2A 92.593 135 6 4 1300 1432 746980322 746980190 2.030000e-44 191
12 TraesCS2B01G558600 chr5D 87.256 1381 151 17 3159 4522 464075099 464073727 0.000000e+00 1552
13 TraesCS2B01G558600 chr5D 83.636 770 91 20 631 1365 464077161 464076392 0.000000e+00 691
14 TraesCS2B01G558600 chr5D 84.990 493 69 3 1364 1852 464076360 464075869 3.830000e-136 496
15 TraesCS2B01G558600 chr5D 79.175 509 81 9 6 507 464077805 464077315 4.110000e-86 329
16 TraesCS2B01G558600 chr5A 86.972 1374 166 10 3173 4536 584458229 584456859 0.000000e+00 1533
17 TraesCS2B01G558600 chr5A 83.139 1198 154 22 693 1851 584491754 584490566 0.000000e+00 1050
18 TraesCS2B01G558600 chr5A 79.135 532 80 21 6 525 584507552 584507040 6.830000e-89 339
19 TraesCS2B01G558600 chr5A 82.784 273 37 9 4577 4844 130535256 130535523 9.220000e-58 235
20 TraesCS2B01G558600 chr5B 86.142 1436 172 19 3159 4577 570932505 570931080 0.000000e+00 1524
21 TraesCS2B01G558600 chr5B 83.677 1213 158 23 672 1851 570934465 570933260 0.000000e+00 1107
22 TraesCS2B01G558600 chr5B 98.958 480 5 0 5029 5508 256597432 256596953 0.000000e+00 859
23 TraesCS2B01G558600 chr5B 79.977 884 126 26 631 1466 571122605 571121725 6.100000e-169 604
24 TraesCS2B01G558600 chr5B 91.509 318 26 1 5028 5345 403110487 403110171 2.360000e-118 436
25 TraesCS2B01G558600 chr5B 87.410 278 32 3 5230 5506 3943823 3944098 3.200000e-82 316
26 TraesCS2B01G558600 chr5B 77.864 515 83 12 6 507 570935254 570934758 1.940000e-74 291
27 TraesCS2B01G558600 chr3A 84.340 1060 156 10 3441 4495 10829419 10830473 0.000000e+00 1029
28 TraesCS2B01G558600 chr3A 83.550 1076 173 4 3421 4494 11413871 11414944 0.000000e+00 1003
29 TraesCS2B01G558600 chr3A 91.525 472 35 4 5024 5492 272798922 272799391 0.000000e+00 645
30 TraesCS2B01G558600 chr3B 83.723 1069 168 6 3429 4494 13962716 13961651 0.000000e+00 1005
31 TraesCS2B01G558600 chrUn 83.209 1072 172 8 3441 4508 197247114 197246047 0.000000e+00 976
32 TraesCS2B01G558600 chr7A 98.750 480 6 0 5029 5508 56727185 56726706 0.000000e+00 854
33 TraesCS2B01G558600 chr7A 90.497 463 38 3 5029 5486 664369106 664368645 1.700000e-169 606
34 TraesCS2B01G558600 chr7A 83.396 265 37 5 4574 4834 486156530 486156791 7.130000e-59 239
35 TraesCS2B01G558600 chr6B 96.312 461 17 0 5048 5508 707155249 707154789 0.000000e+00 758
36 TraesCS2B01G558600 chr6B 83.333 264 36 6 4577 4834 217169259 217168998 2.560000e-58 237
37 TraesCS2B01G558600 chr7D 85.171 263 33 5 4580 4838 204871003 204870743 1.180000e-66 265
38 TraesCS2B01G558600 chr7D 84.291 261 34 5 4577 4834 436499200 436498944 1.180000e-61 248
39 TraesCS2B01G558600 chr6D 84.351 262 35 5 4577 4834 123159231 123158972 9.160000e-63 252
40 TraesCS2B01G558600 chr7B 83.895 267 34 8 4577 4838 169295739 169295477 4.260000e-61 246
41 TraesCS2B01G558600 chr3D 83.459 266 34 7 4577 4834 168185649 168185912 7.130000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G558600 chr2B 752830383 752835890 5507 False 10172.000000 10172 100.00000 1 5508 1 chr2B.!!$F3 5507
1 TraesCS2B01G558600 chr2D 617073375 617077937 4562 False 6926.000000 6926 94.10200 1 4563 1 chr2D.!!$F1 4562
2 TraesCS2B01G558600 chr2A 747152483 747154433 1950 False 2507.000000 2507 89.93400 3062 5019 1 chr2A.!!$F1 1957
3 TraesCS2B01G558600 chr2A 747144260 747147473 3213 False 1536.000000 2575 85.72350 1 2897 2 chr2A.!!$F3 2896
4 TraesCS2B01G558600 chr2A 746977151 746982354 5203 False 1327.666667 1895 88.37000 13 4576 3 chr2A.!!$F2 4563
5 TraesCS2B01G558600 chr5D 464073727 464077805 4078 True 767.000000 1552 83.76425 6 4522 4 chr5D.!!$R1 4516
6 TraesCS2B01G558600 chr5A 584456859 584458229 1370 True 1533.000000 1533 86.97200 3173 4536 1 chr5A.!!$R1 1363
7 TraesCS2B01G558600 chr5A 584490566 584491754 1188 True 1050.000000 1050 83.13900 693 1851 1 chr5A.!!$R2 1158
8 TraesCS2B01G558600 chr5A 584507040 584507552 512 True 339.000000 339 79.13500 6 525 1 chr5A.!!$R3 519
9 TraesCS2B01G558600 chr5B 570931080 570935254 4174 True 974.000000 1524 82.56100 6 4577 3 chr5B.!!$R4 4571
10 TraesCS2B01G558600 chr5B 571121725 571122605 880 True 604.000000 604 79.97700 631 1466 1 chr5B.!!$R3 835
11 TraesCS2B01G558600 chr3A 10829419 10830473 1054 False 1029.000000 1029 84.34000 3441 4495 1 chr3A.!!$F1 1054
12 TraesCS2B01G558600 chr3A 11413871 11414944 1073 False 1003.000000 1003 83.55000 3421 4494 1 chr3A.!!$F2 1073
13 TraesCS2B01G558600 chr3B 13961651 13962716 1065 True 1005.000000 1005 83.72300 3429 4494 1 chr3B.!!$R1 1065
14 TraesCS2B01G558600 chrUn 197246047 197247114 1067 True 976.000000 976 83.20900 3441 4508 1 chrUn.!!$R1 1067

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 284 0.894835 TATCGGTGCAAGTCAGCTCA 59.105 50.000 0.00 0.00 40.87 4.26 F
998 1253 1.345741 TCCACAGTGCAGAAGGAGAAG 59.654 52.381 0.00 0.00 0.00 2.85 F
2128 2844 3.386768 TTAGCGAATGGCCATCTCTAC 57.613 47.619 21.08 12.67 45.17 2.59 F
2670 3425 0.107268 TGATGCCGCATGAGCTGTAT 59.893 50.000 11.49 0.00 39.10 2.29 F
3703 4951 0.656259 CTGTGGCGATCAAGATGCTG 59.344 55.000 0.00 0.00 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 1978 0.454600 CACCATGCTTGGATGCTGAC 59.545 55.000 24.48 0.00 46.92 3.51 R
2276 3003 0.878416 TTGCGTCCAATAGCAACCAC 59.122 50.000 0.00 0.00 46.83 4.16 R
4041 5289 1.004440 GCAAGGCCGAAGTCTGAGT 60.004 57.895 0.00 0.00 0.00 3.41 R
4092 5340 1.004560 CCTCTTGCTGCGGTCAAGA 60.005 57.895 22.64 22.64 45.25 3.02 R
5046 6301 0.035439 ATTTCGATCCGGCAAGTGGT 60.035 50.000 0.00 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.163478 ACCGGTATGTAGTCACTATTGTTCC 60.163 44.000 4.49 0.00 0.00 3.62
139 143 1.843851 AGATAAGGGCGTTGATCCCAA 59.156 47.619 2.08 0.00 46.36 4.12
280 284 0.894835 TATCGGTGCAAGTCAGCTCA 59.105 50.000 0.00 0.00 40.87 4.26
810 1036 7.462571 TCTACTGTAGTGATGCAGTCTAAAA 57.537 36.000 14.11 0.00 43.91 1.52
811 1037 7.539436 TCTACTGTAGTGATGCAGTCTAAAAG 58.461 38.462 14.11 0.00 43.91 2.27
812 1038 4.932200 ACTGTAGTGATGCAGTCTAAAAGC 59.068 41.667 0.00 0.00 41.58 3.51
813 1039 5.152623 TGTAGTGATGCAGTCTAAAAGCT 57.847 39.130 0.00 0.00 0.00 3.74
814 1040 5.551233 TGTAGTGATGCAGTCTAAAAGCTT 58.449 37.500 0.00 0.00 0.00 3.74
863 1115 7.778382 ACTAGAAAACAACATACAGGAGGTTTT 59.222 33.333 0.00 0.00 40.09 2.43
962 1217 6.774673 TGTCTTTGTAATCACAATACCTGGA 58.225 36.000 0.00 0.00 44.01 3.86
980 1235 4.982241 TGGATTACCTTCATCCATCTCC 57.018 45.455 0.00 0.00 44.50 3.71
981 1236 4.306391 TGGATTACCTTCATCCATCTCCA 58.694 43.478 0.00 0.00 44.50 3.86
998 1253 1.345741 TCCACAGTGCAGAAGGAGAAG 59.654 52.381 0.00 0.00 0.00 2.85
1179 1440 3.887716 GGCTTGATTCCAGCAATACATCT 59.112 43.478 11.44 0.00 0.00 2.90
1402 1724 6.239430 CCACTGTACTCCACATTATAGCAGAT 60.239 42.308 0.00 0.00 36.29 2.90
1622 1944 4.408270 AGACTGCAAGGTCATATCAGATGT 59.592 41.667 8.62 0.00 39.30 3.06
1656 1978 6.038603 CGATATTTGGCACAGGATATTATGGG 59.961 42.308 0.00 0.00 42.39 4.00
1864 2531 8.511321 TCATTAATTTCTACTGTGCGACATTTT 58.489 29.630 0.00 0.00 0.00 1.82
1868 2535 4.251543 TCTACTGTGCGACATTTTCAGA 57.748 40.909 0.00 0.00 0.00 3.27
1948 2615 7.921786 AGCTTGAGTAAACACATTATAAGCA 57.078 32.000 0.00 0.00 38.67 3.91
1955 2626 9.916397 GAGTAAACACATTATAAGCACATGTAC 57.084 33.333 0.00 0.00 29.78 2.90
1972 2658 7.912250 GCACATGTACATTCTGAAATTAGGAAG 59.088 37.037 5.37 0.00 0.00 3.46
2127 2843 4.040339 TCAATTAGCGAATGGCCATCTCTA 59.960 41.667 21.08 16.68 45.17 2.43
2128 2844 3.386768 TTAGCGAATGGCCATCTCTAC 57.613 47.619 21.08 12.67 45.17 2.59
2214 2932 5.451908 ACACATTTGAGATAAACACAAGCG 58.548 37.500 0.00 0.00 31.53 4.68
2276 3003 8.571336 ACATATTCCAAGAACTTCAAGTTTCTG 58.429 33.333 3.76 5.04 38.80 3.02
2317 3044 2.920647 GCCAACATGTTACAGCCGTTTC 60.921 50.000 11.53 0.00 0.00 2.78
2337 3064 5.485209 TTCTGTTTCTAGTTTCCCTCCTC 57.515 43.478 0.00 0.00 0.00 3.71
2338 3065 3.838903 TCTGTTTCTAGTTTCCCTCCTCC 59.161 47.826 0.00 0.00 0.00 4.30
2339 3066 2.910977 TGTTTCTAGTTTCCCTCCTCCC 59.089 50.000 0.00 0.00 0.00 4.30
2340 3067 2.239150 GTTTCTAGTTTCCCTCCTCCCC 59.761 54.545 0.00 0.00 0.00 4.81
2341 3068 0.342313 TCTAGTTTCCCTCCTCCCCC 59.658 60.000 0.00 0.00 0.00 5.40
2342 3069 1.002533 TAGTTTCCCTCCTCCCCCG 59.997 63.158 0.00 0.00 0.00 5.73
2343 3070 4.111053 GTTTCCCTCCTCCCCCGC 62.111 72.222 0.00 0.00 0.00 6.13
2344 3071 4.667935 TTTCCCTCCTCCCCCGCA 62.668 66.667 0.00 0.00 0.00 5.69
2383 3131 4.191544 CCGAGACTTGCCAAGATAAATCA 58.808 43.478 12.25 0.00 0.00 2.57
2400 3148 7.761249 AGATAAATCAGGTTGCAACAATTTAGC 59.239 33.333 29.02 29.02 32.31 3.09
2438 3189 8.090831 CCAAAATACATGCTAGCTCATACTAGA 58.909 37.037 17.23 0.00 41.92 2.43
2622 3377 4.216257 CCAGGCATTATTGTGCTACCATAC 59.784 45.833 0.00 0.00 44.45 2.39
2628 3383 7.390440 GGCATTATTGTGCTACCATACTTATGA 59.610 37.037 0.00 0.00 44.45 2.15
2670 3425 0.107268 TGATGCCGCATGAGCTGTAT 59.893 50.000 11.49 0.00 39.10 2.29
2796 3562 7.103641 TGGTGAGAAATATAAGAAGCGAAAGT 58.896 34.615 0.00 0.00 0.00 2.66
2849 3615 0.698818 AAGTTTACCTGGGAGGCTGG 59.301 55.000 0.00 0.00 39.63 4.85
2996 3931 7.062957 AGGTGAGAATAACCCTTAATCCAATG 58.937 38.462 0.00 0.00 42.46 2.82
3152 4381 7.310664 GCCATACATCAATGTTGGATCTAATG 58.689 38.462 19.60 8.78 41.97 1.90
3165 4394 9.130661 TGTTGGATCTAATGTTTCTTTTCTCAA 57.869 29.630 0.00 0.00 0.00 3.02
3277 4510 1.133976 GCAGGTACAGCTCCAATCCAT 60.134 52.381 0.00 0.00 38.05 3.41
3281 4514 3.643792 AGGTACAGCTCCAATCCATACTC 59.356 47.826 0.00 0.00 0.00 2.59
3284 4517 5.482175 GGTACAGCTCCAATCCATACTCTAT 59.518 44.000 0.00 0.00 0.00 1.98
3287 4520 6.294473 ACAGCTCCAATCCATACTCTATTTG 58.706 40.000 0.00 0.00 0.00 2.32
3617 4865 7.277098 CCGAAATTAAGAAGATAACAAGACGGA 59.723 37.037 0.00 0.00 34.79 4.69
3703 4951 0.656259 CTGTGGCGATCAAGATGCTG 59.344 55.000 0.00 0.00 0.00 4.41
3808 5056 1.959282 CTTGGCTTTTGCTCTGAAGGT 59.041 47.619 0.00 0.00 46.54 3.50
3821 5069 3.769844 CTCTGAAGGTACAAGAAGGGCTA 59.230 47.826 0.00 0.00 0.00 3.93
3831 5079 6.988580 GGTACAAGAAGGGCTATTATTTACGT 59.011 38.462 0.00 0.00 0.00 3.57
3839 5087 9.216117 GAAGGGCTATTATTTACGTATTCATGT 57.784 33.333 0.00 0.00 0.00 3.21
3910 5158 0.687354 GAGAACTCCTGGCACCAGAA 59.313 55.000 18.44 0.00 46.30 3.02
4041 5289 5.046878 TGGACTACAGCTTTAATCCGAAGAA 60.047 40.000 3.13 0.00 0.00 2.52
4092 5340 3.385755 GCAAGGGACCAAAGCATCATTAT 59.614 43.478 0.00 0.00 0.00 1.28
4120 5368 2.036256 GCAAGAGGCACCATGGGT 59.964 61.111 18.09 0.00 43.97 4.51
4344 5592 0.179018 GTGACACCAGAAGGGCAAGT 60.179 55.000 0.00 0.00 42.05 3.16
4348 5596 3.181434 TGACACCAGAAGGGCAAGTAAAT 60.181 43.478 0.00 0.00 42.05 1.40
4543 5794 5.936686 TCGTATCACCATAGTGTACTAGC 57.063 43.478 0.00 0.00 44.83 3.42
4612 5863 7.681939 TTCTTTTTACTCCGCATACAAGATT 57.318 32.000 0.00 0.00 0.00 2.40
4684 5935 5.413499 TGTCGGGAACTACAATACTAAAGC 58.587 41.667 0.00 0.00 0.00 3.51
4791 6045 8.641499 TGGTCAAACTTTGCTAAATTTAACTG 57.359 30.769 0.00 0.00 0.00 3.16
4796 6050 7.930513 AACTTTGCTAAATTTAACTGCAGAC 57.069 32.000 23.35 0.00 35.02 3.51
4800 6054 8.885494 TTTGCTAAATTTAACTGCAGACAAAT 57.115 26.923 23.35 20.15 35.02 2.32
4801 6055 7.872163 TGCTAAATTTAACTGCAGACAAATG 57.128 32.000 23.35 13.12 0.00 2.32
4834 6088 4.657013 ACTGAAAAGAAATGGAGGGAGTC 58.343 43.478 0.00 0.00 0.00 3.36
4850 6104 6.762187 GGAGGGAGTCTTAAATGCTAAACTAC 59.238 42.308 0.00 0.00 0.00 2.73
4892 6146 7.943079 TTGGTAGCAGTAGTATGTACAACTA 57.057 36.000 0.00 6.72 0.00 2.24
4898 6152 8.350852 AGCAGTAGTATGTACAACTAGAAAGT 57.649 34.615 14.35 0.00 37.65 2.66
4922 6176 3.118038 TGGTTGTTTAGTCAGCTTCCTGT 60.118 43.478 0.00 0.00 40.09 4.00
4923 6177 3.251004 GGTTGTTTAGTCAGCTTCCTGTG 59.749 47.826 0.00 0.00 40.09 3.66
4924 6178 3.838244 TGTTTAGTCAGCTTCCTGTGT 57.162 42.857 0.00 0.00 40.09 3.72
4925 6179 4.948341 TGTTTAGTCAGCTTCCTGTGTA 57.052 40.909 0.00 0.00 40.09 2.90
4926 6180 4.883083 TGTTTAGTCAGCTTCCTGTGTAG 58.117 43.478 0.00 0.00 40.09 2.74
4953 6208 9.710900 CTTATGAGCCACTATATTGTGATAACA 57.289 33.333 17.42 11.84 40.12 2.41
4981 6236 9.052759 TGAAGTAGAAACTAGTTGAAATTGGAC 57.947 33.333 9.34 0.00 33.75 4.02
4983 6238 8.834749 AGTAGAAACTAGTTGAAATTGGACTC 57.165 34.615 9.34 0.00 32.84 3.36
4997 6252 4.844998 TTGGACTCGATTTGCAATGAAA 57.155 36.364 0.00 0.00 0.00 2.69
5003 6258 6.470235 GGACTCGATTTGCAATGAAATAGTTG 59.530 38.462 0.00 0.00 0.00 3.16
5004 6259 6.324819 ACTCGATTTGCAATGAAATAGTTGG 58.675 36.000 0.00 0.00 0.00 3.77
5019 6274 6.394345 AATAGTTGGAGAATGAGGAACCTT 57.606 37.500 0.00 0.00 0.00 3.50
5020 6275 4.026356 AGTTGGAGAATGAGGAACCTTG 57.974 45.455 0.00 0.00 0.00 3.61
5021 6276 2.489722 GTTGGAGAATGAGGAACCTTGC 59.510 50.000 0.00 0.00 0.00 4.01
5022 6277 1.704628 TGGAGAATGAGGAACCTTGCA 59.295 47.619 0.00 0.00 0.00 4.08
5023 6278 2.309755 TGGAGAATGAGGAACCTTGCAT 59.690 45.455 0.00 0.00 0.00 3.96
5024 6279 3.245371 TGGAGAATGAGGAACCTTGCATT 60.245 43.478 7.27 7.27 33.97 3.56
5025 6280 3.379688 GGAGAATGAGGAACCTTGCATTC 59.620 47.826 19.05 19.05 44.17 2.67
5026 6281 4.012374 GAGAATGAGGAACCTTGCATTCA 58.988 43.478 24.15 8.56 45.48 2.57
5027 6282 4.607239 AGAATGAGGAACCTTGCATTCAT 58.393 39.130 24.15 13.91 45.48 2.57
5028 6283 4.401519 AGAATGAGGAACCTTGCATTCATG 59.598 41.667 24.15 0.00 45.48 3.07
5029 6284 3.438216 TGAGGAACCTTGCATTCATGA 57.562 42.857 0.00 0.00 0.00 3.07
5030 6285 3.972133 TGAGGAACCTTGCATTCATGAT 58.028 40.909 0.00 0.00 0.00 2.45
5031 6286 4.346730 TGAGGAACCTTGCATTCATGATT 58.653 39.130 0.00 0.00 0.00 2.57
5032 6287 4.773674 TGAGGAACCTTGCATTCATGATTT 59.226 37.500 0.00 0.00 0.00 2.17
5033 6288 5.246656 TGAGGAACCTTGCATTCATGATTTT 59.753 36.000 0.00 0.00 0.00 1.82
5034 6289 6.117975 AGGAACCTTGCATTCATGATTTTT 57.882 33.333 0.00 0.00 0.00 1.94
5054 6309 4.370364 TTTGTCAAAAGAGACCACTTGC 57.630 40.909 0.00 0.00 37.73 4.01
5055 6310 2.297701 TGTCAAAAGAGACCACTTGCC 58.702 47.619 0.00 0.00 37.73 4.52
5056 6311 1.264288 GTCAAAAGAGACCACTTGCCG 59.736 52.381 0.00 0.00 32.36 5.69
5057 6312 0.593128 CAAAAGAGACCACTTGCCGG 59.407 55.000 0.00 0.00 0.00 6.13
5058 6313 0.472471 AAAAGAGACCACTTGCCGGA 59.528 50.000 5.05 0.00 0.00 5.14
5059 6314 0.693049 AAAGAGACCACTTGCCGGAT 59.307 50.000 5.05 0.00 0.00 4.18
5060 6315 0.250513 AAGAGACCACTTGCCGGATC 59.749 55.000 5.05 0.00 0.00 3.36
5061 6316 1.519455 GAGACCACTTGCCGGATCG 60.519 63.158 5.05 0.00 0.00 3.69
5062 6317 1.945354 GAGACCACTTGCCGGATCGA 61.945 60.000 5.05 0.00 0.00 3.59
5063 6318 1.079405 GACCACTTGCCGGATCGAA 60.079 57.895 5.05 0.00 0.00 3.71
5064 6319 0.672401 GACCACTTGCCGGATCGAAA 60.672 55.000 5.05 0.00 0.00 3.46
5065 6320 0.035439 ACCACTTGCCGGATCGAAAT 60.035 50.000 5.05 0.00 0.00 2.17
5066 6321 0.378257 CCACTTGCCGGATCGAAATG 59.622 55.000 5.05 0.00 0.00 2.32
5067 6322 1.368641 CACTTGCCGGATCGAAATGA 58.631 50.000 5.05 0.00 0.00 2.57
5068 6323 1.062587 CACTTGCCGGATCGAAATGAC 59.937 52.381 5.05 0.00 0.00 3.06
5069 6324 1.338674 ACTTGCCGGATCGAAATGACA 60.339 47.619 5.05 0.00 0.00 3.58
5070 6325 1.737236 CTTGCCGGATCGAAATGACAA 59.263 47.619 5.05 0.00 0.00 3.18
5071 6326 1.814793 TGCCGGATCGAAATGACAAA 58.185 45.000 5.05 0.00 0.00 2.83
5072 6327 2.155279 TGCCGGATCGAAATGACAAAA 58.845 42.857 5.05 0.00 0.00 2.44
5073 6328 2.554462 TGCCGGATCGAAATGACAAAAA 59.446 40.909 5.05 0.00 0.00 1.94
5096 6351 9.745018 AAAAAGACCATCTCTGAATTAGATTGA 57.255 29.630 0.00 0.00 34.21 2.57
5097 6352 8.729805 AAAGACCATCTCTGAATTAGATTGAC 57.270 34.615 0.00 0.00 34.21 3.18
5098 6353 7.429374 AGACCATCTCTGAATTAGATTGACA 57.571 36.000 0.00 0.00 34.21 3.58
5099 6354 7.855375 AGACCATCTCTGAATTAGATTGACAA 58.145 34.615 0.00 0.00 34.21 3.18
5100 6355 8.324306 AGACCATCTCTGAATTAGATTGACAAA 58.676 33.333 0.00 0.00 34.21 2.83
5101 6356 8.868522 ACCATCTCTGAATTAGATTGACAAAA 57.131 30.769 0.00 0.00 34.21 2.44
5102 6357 8.954350 ACCATCTCTGAATTAGATTGACAAAAG 58.046 33.333 0.00 0.00 34.21 2.27
5103 6358 9.170734 CCATCTCTGAATTAGATTGACAAAAGA 57.829 33.333 0.00 0.00 34.21 2.52
5106 6361 9.429359 TCTCTGAATTAGATTGACAAAAGAGAC 57.571 33.333 0.00 0.00 33.39 3.36
5107 6362 8.553459 TCTGAATTAGATTGACAAAAGAGACC 57.447 34.615 0.00 0.00 0.00 3.85
5108 6363 7.607991 TCTGAATTAGATTGACAAAAGAGACCC 59.392 37.037 0.00 0.00 0.00 4.46
5109 6364 6.659242 TGAATTAGATTGACAAAAGAGACCCC 59.341 38.462 0.00 0.00 0.00 4.95
5110 6365 3.441500 AGATTGACAAAAGAGACCCCC 57.558 47.619 0.00 0.00 0.00 5.40
5111 6366 2.989571 AGATTGACAAAAGAGACCCCCT 59.010 45.455 0.00 0.00 0.00 4.79
5112 6367 2.951229 TTGACAAAAGAGACCCCCTC 57.049 50.000 0.00 0.00 42.28 4.30
5113 6368 0.685097 TGACAAAAGAGACCCCCTCG 59.315 55.000 0.00 0.00 46.49 4.63
5114 6369 0.036294 GACAAAAGAGACCCCCTCGG 60.036 60.000 0.00 0.00 46.49 4.63
5225 6480 2.989639 TGGCGACAGGATTCCAGG 59.010 61.111 5.29 0.00 35.01 4.45
5226 6481 2.514824 GGCGACAGGATTCCAGGC 60.515 66.667 5.29 0.00 0.00 4.85
5227 6482 2.892425 GCGACAGGATTCCAGGCG 60.892 66.667 18.30 18.30 44.56 5.52
5228 6483 2.202932 CGACAGGATTCCAGGCGG 60.203 66.667 15.16 0.00 37.91 6.13
5229 6484 2.514824 GACAGGATTCCAGGCGGC 60.515 66.667 0.00 0.00 0.00 6.53
5230 6485 3.329542 GACAGGATTCCAGGCGGCA 62.330 63.158 13.08 0.00 0.00 5.69
5231 6486 2.045045 CAGGATTCCAGGCGGCAA 60.045 61.111 13.08 0.00 0.00 4.52
5232 6487 2.044946 AGGATTCCAGGCGGCAAC 60.045 61.111 13.08 0.00 0.00 4.17
5244 6499 4.456806 GGCAACGGAACAGTGACT 57.543 55.556 0.00 0.00 0.00 3.41
5245 6500 1.941812 GGCAACGGAACAGTGACTG 59.058 57.895 11.70 11.70 37.52 3.51
5246 6501 1.507141 GGCAACGGAACAGTGACTGG 61.507 60.000 17.92 1.10 35.51 4.00
5247 6502 0.814010 GCAACGGAACAGTGACTGGT 60.814 55.000 17.92 10.97 35.51 4.00
5248 6503 1.217882 CAACGGAACAGTGACTGGTC 58.782 55.000 21.92 21.92 46.44 4.02
5249 6504 1.120530 AACGGAACAGTGACTGGTCT 58.879 50.000 27.69 8.56 46.38 3.85
5250 6505 3.201342 CGGAACAGTGACTGGTCTG 57.799 57.895 27.69 25.65 46.38 3.51
5251 6506 3.614399 GGAACAGTGACTGGTCTGG 57.386 57.895 27.69 0.00 46.38 3.86
5252 6507 0.759346 GGAACAGTGACTGGTCTGGT 59.241 55.000 27.69 0.00 46.38 4.00
5253 6508 1.541233 GGAACAGTGACTGGTCTGGTG 60.541 57.143 27.69 0.00 46.38 4.17
5254 6509 0.469917 AACAGTGACTGGTCTGGTGG 59.530 55.000 17.92 0.00 35.51 4.61
5255 6510 1.372683 CAGTGACTGGTCTGGTGGG 59.627 63.158 4.28 0.00 0.00 4.61
5256 6511 2.032681 GTGACTGGTCTGGTGGGC 59.967 66.667 2.38 0.00 0.00 5.36
5257 6512 3.249189 TGACTGGTCTGGTGGGCC 61.249 66.667 0.00 0.00 0.00 5.80
5258 6513 3.249189 GACTGGTCTGGTGGGCCA 61.249 66.667 0.00 0.00 43.73 5.36
5259 6514 3.553095 GACTGGTCTGGTGGGCCAC 62.553 68.421 28.69 28.69 40.46 5.01
5260 6515 4.704833 CTGGTCTGGTGGGCCACG 62.705 72.222 29.18 17.26 40.46 4.94
5273 6528 4.418401 CCACGCCGCCACCATTTG 62.418 66.667 0.00 0.00 0.00 2.32
5274 6529 3.361158 CACGCCGCCACCATTTGA 61.361 61.111 0.00 0.00 0.00 2.69
5275 6530 3.055719 ACGCCGCCACCATTTGAG 61.056 61.111 0.00 0.00 0.00 3.02
5276 6531 3.814268 CGCCGCCACCATTTGAGG 61.814 66.667 0.00 0.00 0.00 3.86
5277 6532 4.133796 GCCGCCACCATTTGAGGC 62.134 66.667 0.00 0.00 44.89 4.70
5281 6536 3.451894 CCACCATTTGAGGCGGCC 61.452 66.667 12.11 12.11 0.00 6.13
5282 6537 3.814268 CACCATTTGAGGCGGCCG 61.814 66.667 24.05 24.05 0.00 6.13
5296 6551 4.394712 GCCGCCACTGTACCTGCT 62.395 66.667 0.00 0.00 0.00 4.24
5297 6552 2.434884 CCGCCACTGTACCTGCTG 60.435 66.667 0.00 0.00 0.00 4.41
5298 6553 3.121030 CGCCACTGTACCTGCTGC 61.121 66.667 0.00 0.00 0.00 5.25
5299 6554 3.121030 GCCACTGTACCTGCTGCG 61.121 66.667 0.00 0.00 0.00 5.18
5300 6555 3.121030 CCACTGTACCTGCTGCGC 61.121 66.667 0.00 0.00 0.00 6.09
5301 6556 2.047844 CACTGTACCTGCTGCGCT 60.048 61.111 9.73 0.00 0.00 5.92
5302 6557 2.097038 CACTGTACCTGCTGCGCTC 61.097 63.158 9.73 0.28 0.00 5.03
5303 6558 2.882777 CTGTACCTGCTGCGCTCG 60.883 66.667 9.73 0.00 0.00 5.03
5304 6559 4.435436 TGTACCTGCTGCGCTCGG 62.435 66.667 9.73 5.46 0.00 4.63
5319 6574 4.063967 CGGGCCGACACACTGCTA 62.064 66.667 24.41 0.00 0.00 3.49
5320 6575 2.434359 GGGCCGACACACTGCTAC 60.434 66.667 0.00 0.00 0.00 3.58
5321 6576 2.657237 GGCCGACACACTGCTACT 59.343 61.111 0.00 0.00 0.00 2.57
5322 6577 1.738099 GGCCGACACACTGCTACTG 60.738 63.158 0.00 0.00 0.00 2.74
5323 6578 2.383527 GCCGACACACTGCTACTGC 61.384 63.158 0.00 0.00 40.20 4.40
5324 6579 1.738099 CCGACACACTGCTACTGCC 60.738 63.158 0.00 0.00 38.71 4.85
5325 6580 2.088763 CGACACACTGCTACTGCCG 61.089 63.158 0.00 0.00 38.71 5.69
5326 6581 2.357517 ACACACTGCTACTGCCGC 60.358 61.111 0.00 0.00 38.71 6.53
5327 6582 2.357396 CACACTGCTACTGCCGCA 60.357 61.111 0.00 0.00 38.71 5.69
5328 6583 2.357517 ACACTGCTACTGCCGCAC 60.358 61.111 0.00 0.00 38.71 5.34
5329 6584 3.481903 CACTGCTACTGCCGCACG 61.482 66.667 0.00 0.00 38.71 5.34
5377 6632 4.082523 GAGGCGGCTGGCACTGTA 62.083 66.667 19.63 0.00 46.16 2.74
5378 6633 4.087892 AGGCGGCTGGCACTGTAG 62.088 66.667 22.60 0.00 46.16 2.74
5380 6635 4.767255 GCGGCTGGCACTGTAGCT 62.767 66.667 1.08 0.00 42.87 3.32
5381 6636 2.816958 CGGCTGGCACTGTAGCTG 60.817 66.667 0.00 0.00 39.80 4.24
5382 6637 2.437359 GGCTGGCACTGTAGCTGG 60.437 66.667 0.00 0.00 39.80 4.85
5383 6638 2.348998 GCTGGCACTGTAGCTGGT 59.651 61.111 0.00 0.00 36.99 4.00
5384 6639 2.037136 GCTGGCACTGTAGCTGGTG 61.037 63.158 0.00 4.16 36.99 4.17
5385 6640 1.376424 CTGGCACTGTAGCTGGTGG 60.376 63.158 14.81 0.00 34.41 4.61
5387 6642 2.032528 GCACTGTAGCTGGTGGCA 59.967 61.111 14.81 0.00 44.79 4.92
5388 6643 1.377725 GCACTGTAGCTGGTGGCAT 60.378 57.895 14.81 0.00 44.79 4.40
5389 6644 0.962356 GCACTGTAGCTGGTGGCATT 60.962 55.000 14.81 0.00 44.79 3.56
5390 6645 0.806868 CACTGTAGCTGGTGGCATTG 59.193 55.000 0.00 0.00 44.79 2.82
5391 6646 0.401738 ACTGTAGCTGGTGGCATTGT 59.598 50.000 0.00 0.00 44.79 2.71
5392 6647 1.628340 ACTGTAGCTGGTGGCATTGTA 59.372 47.619 0.00 0.00 44.79 2.41
5393 6648 2.239654 ACTGTAGCTGGTGGCATTGTAT 59.760 45.455 0.00 0.00 44.79 2.29
5394 6649 3.282021 CTGTAGCTGGTGGCATTGTATT 58.718 45.455 0.00 0.00 44.79 1.89
5395 6650 4.080582 ACTGTAGCTGGTGGCATTGTATTA 60.081 41.667 0.00 0.00 44.79 0.98
5396 6651 5.047566 TGTAGCTGGTGGCATTGTATTAT 57.952 39.130 0.00 0.00 44.79 1.28
5397 6652 4.821260 TGTAGCTGGTGGCATTGTATTATG 59.179 41.667 0.00 0.00 44.79 1.90
5398 6653 3.902218 AGCTGGTGGCATTGTATTATGT 58.098 40.909 0.00 0.00 44.79 2.29
5399 6654 3.633525 AGCTGGTGGCATTGTATTATGTG 59.366 43.478 0.00 0.00 44.79 3.21
5400 6655 3.381272 GCTGGTGGCATTGTATTATGTGT 59.619 43.478 0.00 0.00 41.35 3.72
5401 6656 4.578516 GCTGGTGGCATTGTATTATGTGTA 59.421 41.667 0.00 0.00 41.35 2.90
5402 6657 5.505654 GCTGGTGGCATTGTATTATGTGTAC 60.506 44.000 0.00 0.00 41.35 2.90
5403 6658 4.884744 TGGTGGCATTGTATTATGTGTACC 59.115 41.667 0.00 0.00 0.00 3.34
5404 6659 4.884744 GGTGGCATTGTATTATGTGTACCA 59.115 41.667 0.00 0.00 31.37 3.25
5405 6660 5.220970 GGTGGCATTGTATTATGTGTACCAC 60.221 44.000 0.00 0.00 42.40 4.16
5416 6671 1.365999 TGTACCACACACTGGAGCG 59.634 57.895 0.00 0.00 43.95 5.03
5417 6672 2.027625 GTACCACACACTGGAGCGC 61.028 63.158 0.00 0.00 43.95 5.92
5418 6673 2.503382 TACCACACACTGGAGCGCA 61.503 57.895 11.47 0.00 43.95 6.09
5419 6674 1.826340 TACCACACACTGGAGCGCAT 61.826 55.000 11.47 0.00 43.95 4.73
5420 6675 1.968017 CCACACACTGGAGCGCATT 60.968 57.895 11.47 0.00 43.95 3.56
5421 6676 1.518056 CCACACACTGGAGCGCATTT 61.518 55.000 11.47 0.00 43.95 2.32
5422 6677 0.386352 CACACACTGGAGCGCATTTG 60.386 55.000 11.47 1.13 0.00 2.32
5423 6678 1.443194 CACACTGGAGCGCATTTGC 60.443 57.895 11.47 0.00 37.78 3.68
5430 6685 4.972591 AGCGCATTTGCTTGAACC 57.027 50.000 11.47 0.00 44.46 3.62
5431 6686 1.081242 AGCGCATTTGCTTGAACCG 60.081 52.632 11.47 0.00 44.46 4.44
5432 6687 2.088178 GCGCATTTGCTTGAACCGG 61.088 57.895 0.30 0.00 39.32 5.28
5433 6688 1.578926 CGCATTTGCTTGAACCGGA 59.421 52.632 9.46 0.00 39.32 5.14
5434 6689 0.729140 CGCATTTGCTTGAACCGGAC 60.729 55.000 9.46 1.77 39.32 4.79
5435 6690 0.313672 GCATTTGCTTGAACCGGACA 59.686 50.000 9.46 5.02 38.21 4.02
5436 6691 1.067635 GCATTTGCTTGAACCGGACAT 60.068 47.619 9.46 0.00 38.21 3.06
5437 6692 2.163412 GCATTTGCTTGAACCGGACATA 59.837 45.455 9.46 0.00 38.21 2.29
5438 6693 3.731867 GCATTTGCTTGAACCGGACATAG 60.732 47.826 9.46 9.30 38.21 2.23
5439 6694 1.448985 TTGCTTGAACCGGACATAGC 58.551 50.000 9.46 17.65 0.00 2.97
5440 6695 0.323302 TGCTTGAACCGGACATAGCA 59.677 50.000 22.98 22.98 36.38 3.49
5441 6696 1.009829 GCTTGAACCGGACATAGCAG 58.990 55.000 9.46 3.57 0.00 4.24
5442 6697 1.009829 CTTGAACCGGACATAGCAGC 58.990 55.000 9.46 0.00 0.00 5.25
5443 6698 0.613260 TTGAACCGGACATAGCAGCT 59.387 50.000 9.46 0.00 0.00 4.24
5444 6699 0.613260 TGAACCGGACATAGCAGCTT 59.387 50.000 9.46 0.00 0.00 3.74
5445 6700 1.003118 TGAACCGGACATAGCAGCTTT 59.997 47.619 9.46 0.00 0.00 3.51
5446 6701 2.084546 GAACCGGACATAGCAGCTTTT 58.915 47.619 9.46 0.00 0.00 2.27
5447 6702 2.200373 ACCGGACATAGCAGCTTTTT 57.800 45.000 9.46 0.00 0.00 1.94
5448 6703 1.812571 ACCGGACATAGCAGCTTTTTG 59.187 47.619 9.46 0.00 0.00 2.44
5449 6704 1.133025 CCGGACATAGCAGCTTTTTGG 59.867 52.381 0.00 0.00 0.00 3.28
5450 6705 1.812571 CGGACATAGCAGCTTTTTGGT 59.187 47.619 0.00 0.00 0.00 3.67
5451 6706 2.159517 CGGACATAGCAGCTTTTTGGTC 60.160 50.000 0.00 1.74 0.00 4.02
5452 6707 2.159517 GGACATAGCAGCTTTTTGGTCG 60.160 50.000 0.00 0.00 0.00 4.79
5453 6708 2.484264 GACATAGCAGCTTTTTGGTCGT 59.516 45.455 0.00 0.00 0.00 4.34
5454 6709 2.484264 ACATAGCAGCTTTTTGGTCGTC 59.516 45.455 0.00 0.00 0.00 4.20
5455 6710 1.519408 TAGCAGCTTTTTGGTCGTCC 58.481 50.000 0.00 0.00 0.00 4.79
5456 6711 0.465460 AGCAGCTTTTTGGTCGTCCA 60.465 50.000 0.00 0.00 42.66 4.02
5464 6719 3.805928 TGGTCGTCCAATCAGCCT 58.194 55.556 0.00 0.00 41.25 4.58
5465 6720 2.985001 TGGTCGTCCAATCAGCCTA 58.015 52.632 0.00 0.00 41.25 3.93
5466 6721 1.271856 TGGTCGTCCAATCAGCCTAA 58.728 50.000 0.00 0.00 41.25 2.69
5467 6722 1.837439 TGGTCGTCCAATCAGCCTAAT 59.163 47.619 0.00 0.00 41.25 1.73
5468 6723 2.158957 TGGTCGTCCAATCAGCCTAATC 60.159 50.000 0.00 0.00 41.25 1.75
5469 6724 2.158957 GGTCGTCCAATCAGCCTAATCA 60.159 50.000 0.00 0.00 0.00 2.57
5470 6725 2.866762 GTCGTCCAATCAGCCTAATCAC 59.133 50.000 0.00 0.00 0.00 3.06
5471 6726 2.766263 TCGTCCAATCAGCCTAATCACT 59.234 45.455 0.00 0.00 0.00 3.41
5472 6727 3.958147 TCGTCCAATCAGCCTAATCACTA 59.042 43.478 0.00 0.00 0.00 2.74
5473 6728 4.038042 TCGTCCAATCAGCCTAATCACTAG 59.962 45.833 0.00 0.00 0.00 2.57
5474 6729 4.038042 CGTCCAATCAGCCTAATCACTAGA 59.962 45.833 0.00 0.00 0.00 2.43
5475 6730 5.537188 GTCCAATCAGCCTAATCACTAGAG 58.463 45.833 0.00 0.00 0.00 2.43
5476 6731 5.303078 GTCCAATCAGCCTAATCACTAGAGA 59.697 44.000 0.00 0.00 0.00 3.10
5477 6732 6.014669 GTCCAATCAGCCTAATCACTAGAGAT 60.015 42.308 0.00 0.00 0.00 2.75
5478 6733 6.014755 TCCAATCAGCCTAATCACTAGAGATG 60.015 42.308 3.24 0.00 0.00 2.90
5479 6734 6.014755 CCAATCAGCCTAATCACTAGAGATGA 60.015 42.308 3.24 0.00 31.87 2.92
5480 6735 7.310547 CCAATCAGCCTAATCACTAGAGATGAT 60.311 40.741 3.24 0.31 36.40 2.45
5481 6736 6.832520 TCAGCCTAATCACTAGAGATGATC 57.167 41.667 3.24 0.00 35.72 2.92
5482 6737 6.551085 TCAGCCTAATCACTAGAGATGATCT 58.449 40.000 3.24 0.00 42.47 2.75
5483 6738 7.009550 TCAGCCTAATCACTAGAGATGATCTT 58.990 38.462 3.24 0.00 39.64 2.40
5484 6739 8.166726 TCAGCCTAATCACTAGAGATGATCTTA 58.833 37.037 3.24 0.00 39.64 2.10
5485 6740 8.461222 CAGCCTAATCACTAGAGATGATCTTAG 58.539 40.741 3.24 3.64 39.64 2.18
5486 6741 7.122650 AGCCTAATCACTAGAGATGATCTTAGC 59.877 40.741 3.24 1.60 39.64 3.09
5487 6742 7.122650 GCCTAATCACTAGAGATGATCTTAGCT 59.877 40.741 3.24 0.00 39.64 3.32
5488 6743 9.679661 CCTAATCACTAGAGATGATCTTAGCTA 57.320 37.037 3.24 0.00 39.64 3.32
5490 6745 7.630242 ATCACTAGAGATGATCTTAGCTAGC 57.370 40.000 6.62 6.62 39.64 3.42
5491 6746 6.538263 TCACTAGAGATGATCTTAGCTAGCA 58.462 40.000 18.83 0.00 39.64 3.49
5492 6747 6.429692 TCACTAGAGATGATCTTAGCTAGCAC 59.570 42.308 18.83 1.62 39.64 4.40
5493 6748 5.710099 ACTAGAGATGATCTTAGCTAGCACC 59.290 44.000 18.83 0.00 39.64 5.01
5494 6749 3.505680 AGAGATGATCTTAGCTAGCACCG 59.494 47.826 18.83 4.10 32.99 4.94
5495 6750 2.560542 AGATGATCTTAGCTAGCACCGG 59.439 50.000 18.83 0.00 0.00 5.28
5496 6751 2.067365 TGATCTTAGCTAGCACCGGA 57.933 50.000 18.83 9.61 0.00 5.14
5497 6752 2.384828 TGATCTTAGCTAGCACCGGAA 58.615 47.619 18.83 1.89 0.00 4.30
5498 6753 2.764010 TGATCTTAGCTAGCACCGGAAA 59.236 45.455 18.83 0.35 0.00 3.13
5499 6754 3.388024 TGATCTTAGCTAGCACCGGAAAT 59.612 43.478 18.83 0.59 0.00 2.17
5500 6755 3.179443 TCTTAGCTAGCACCGGAAATG 57.821 47.619 18.83 0.00 0.00 2.32
5501 6756 1.599542 CTTAGCTAGCACCGGAAATGC 59.400 52.381 18.83 8.23 43.74 3.56
5502 6757 0.539518 TAGCTAGCACCGGAAATGCA 59.460 50.000 18.83 0.00 45.92 3.96
5503 6758 0.107017 AGCTAGCACCGGAAATGCAT 60.107 50.000 18.83 0.00 45.92 3.96
5504 6759 0.308993 GCTAGCACCGGAAATGCATC 59.691 55.000 16.90 2.83 45.92 3.91
5505 6760 1.959042 CTAGCACCGGAAATGCATCT 58.041 50.000 16.90 0.26 45.92 2.90
5506 6761 2.806745 GCTAGCACCGGAAATGCATCTA 60.807 50.000 16.90 1.38 45.92 1.98
5507 6762 1.959042 AGCACCGGAAATGCATCTAG 58.041 50.000 16.90 0.00 45.92 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.234615 AATTGTTCGCGGGTGGTCAG 61.235 55.000 6.13 0.00 0.00 3.51
139 143 2.284258 AGCTGCCCTCTTCCTCGT 60.284 61.111 0.00 0.00 0.00 4.18
280 284 1.768275 TGGTGCGGTTCTCCATCATAT 59.232 47.619 0.00 0.00 33.69 1.78
430 446 0.478072 TCCTGGTGCACTTCATGGTT 59.522 50.000 17.98 0.00 0.00 3.67
592 695 2.232941 TGACCGGGTCATTCTACAGTTC 59.767 50.000 25.53 0.00 37.67 3.01
810 1036 4.142160 TGACTGCATCGTTGTAGATAAGCT 60.142 41.667 17.04 0.00 37.75 3.74
811 1037 4.026475 GTGACTGCATCGTTGTAGATAAGC 60.026 45.833 17.04 3.46 37.75 3.09
812 1038 4.504461 GGTGACTGCATCGTTGTAGATAAG 59.496 45.833 17.04 0.00 37.75 1.73
813 1039 4.159693 AGGTGACTGCATCGTTGTAGATAA 59.840 41.667 17.04 1.19 41.13 1.75
814 1040 3.699538 AGGTGACTGCATCGTTGTAGATA 59.300 43.478 17.04 4.07 41.13 1.98
863 1115 1.303806 TCCGTCCGTGGATCAGTGA 60.304 57.895 0.00 0.00 31.53 3.41
962 1217 4.723789 ACTGTGGAGATGGATGAAGGTAAT 59.276 41.667 0.00 0.00 0.00 1.89
980 1235 1.345741 TCCTTCTCCTTCTGCACTGTG 59.654 52.381 2.76 2.76 0.00 3.66
981 1236 1.722034 TCCTTCTCCTTCTGCACTGT 58.278 50.000 0.00 0.00 0.00 3.55
998 1253 6.203723 GGCTGTGACAAGAAATATACTCATCC 59.796 42.308 0.00 0.00 0.00 3.51
1128 1383 3.052081 CGGATCTCGGGTCCATCC 58.948 66.667 5.03 0.00 35.41 3.51
1402 1724 0.615331 CAGCCTACAAGCCTTCCAGA 59.385 55.000 0.00 0.00 0.00 3.86
1473 1795 4.367450 CAGAAGCATAGTAACTGCCTCTC 58.633 47.826 0.00 0.00 38.13 3.20
1622 1944 1.752198 CCAAATATCGGGAGGGCGA 59.248 57.895 0.00 0.00 0.00 5.54
1656 1978 0.454600 CACCATGCTTGGATGCTGAC 59.545 55.000 24.48 0.00 46.92 3.51
1692 2017 3.871594 AGTCGGCTGCTATGTCATAAAAC 59.128 43.478 0.00 0.00 0.00 2.43
1915 2582 5.247564 TGTGTTTACTCAAGCTACCTACCAT 59.752 40.000 0.00 0.00 0.00 3.55
1916 2583 4.589798 TGTGTTTACTCAAGCTACCTACCA 59.410 41.667 0.00 0.00 0.00 3.25
1948 2615 7.611467 TGCTTCCTAATTTCAGAATGTACATGT 59.389 33.333 9.63 2.69 37.40 3.21
1955 2626 8.662141 CCATTTTTGCTTCCTAATTTCAGAATG 58.338 33.333 0.00 0.00 37.54 2.67
2178 2895 5.004922 TCAAATGTGTTTTTGTCTGTCCC 57.995 39.130 0.00 0.00 37.73 4.46
2179 2896 5.890334 TCTCAAATGTGTTTTTGTCTGTCC 58.110 37.500 0.00 0.00 37.73 4.02
2276 3003 0.878416 TTGCGTCCAATAGCAACCAC 59.122 50.000 0.00 0.00 46.83 4.16
2317 3044 3.055021 GGGAGGAGGGAAACTAGAAACAG 60.055 52.174 0.00 0.00 0.00 3.16
2363 3090 5.189180 ACCTGATTTATCTTGGCAAGTCTC 58.811 41.667 25.39 15.65 0.00 3.36
2364 3091 5.184892 ACCTGATTTATCTTGGCAAGTCT 57.815 39.130 25.39 16.59 0.00 3.24
2365 3092 5.644644 CAACCTGATTTATCTTGGCAAGTC 58.355 41.667 25.39 15.95 0.00 3.01
2383 3131 5.304357 AGTTTAGGCTAAATTGTTGCAACCT 59.696 36.000 26.14 15.55 0.00 3.50
2400 3148 6.375455 AGCATGTATTTTGGACTGAGTTTAGG 59.625 38.462 0.00 0.00 0.00 2.69
2450 3205 6.569035 GCTGATAGCAATGCATATTTACAGCA 60.569 38.462 25.17 10.05 41.89 4.41
2484 3239 1.271597 GGCTTGTCACTCCACTCCATT 60.272 52.381 0.00 0.00 0.00 3.16
2486 3241 1.053835 TGGCTTGTCACTCCACTCCA 61.054 55.000 0.00 0.00 0.00 3.86
2628 3383 5.719085 CAGGCTCTAGTACTTCATATCCCAT 59.281 44.000 0.00 0.00 0.00 4.00
2828 3594 2.307686 CCAGCCTCCCAGGTAAACTTTA 59.692 50.000 0.00 0.00 37.80 1.85
2849 3615 1.004745 AGATGTCACATTGGGGACACC 59.995 52.381 13.45 6.34 45.84 4.16
2996 3931 1.376553 GGTCCTGCTCAGTGGCTTC 60.377 63.158 5.39 0.00 0.00 3.86
3369 4617 3.879998 TGCTTTAGCGATTGTAATGGGA 58.120 40.909 0.00 0.00 45.83 4.37
3617 4865 7.062957 CCACCTTGTCCTAATTTATCCTTGAT 58.937 38.462 0.00 0.00 0.00 2.57
3767 5015 4.839121 AGAAGGCGGACAATGTTTGTATA 58.161 39.130 0.00 0.00 45.52 1.47
3887 5135 3.003173 TGCCAGGAGTTCTCGGGG 61.003 66.667 0.00 7.36 0.00 5.73
4041 5289 1.004440 GCAAGGCCGAAGTCTGAGT 60.004 57.895 0.00 0.00 0.00 3.41
4092 5340 1.004560 CCTCTTGCTGCGGTCAAGA 60.005 57.895 22.64 22.64 45.25 3.02
4120 5368 5.593095 AGAGTATAGTTCTGGTGCGATGTAA 59.407 40.000 0.00 0.00 0.00 2.41
4344 5592 6.707608 CACAATAGCCAGCTGTCTCATATTTA 59.292 38.462 13.81 0.00 0.00 1.40
4348 5596 3.181462 CCACAATAGCCAGCTGTCTCATA 60.181 47.826 13.81 0.00 0.00 2.15
4778 6032 7.873739 ACATTTGTCTGCAGTTAAATTTAGC 57.126 32.000 20.49 4.02 0.00 3.09
4791 6045 8.201554 TCAGTCTTCATATAACATTTGTCTGC 57.798 34.615 0.00 0.00 0.00 4.26
4809 6063 5.163045 ACTCCCTCCATTTCTTTTCAGTCTT 60.163 40.000 0.00 0.00 0.00 3.01
4811 6065 4.657013 ACTCCCTCCATTTCTTTTCAGTC 58.343 43.478 0.00 0.00 0.00 3.51
4850 6104 3.055963 ACCAATTGCACCACCATGTAATG 60.056 43.478 0.00 0.00 46.21 1.90
4861 6115 2.711542 ACTACTGCTACCAATTGCACC 58.288 47.619 0.00 0.00 35.20 5.01
4892 6146 5.652452 AGCTGACTAAACAACCAAACTTTCT 59.348 36.000 0.00 0.00 0.00 2.52
4898 6152 4.338118 CAGGAAGCTGACTAAACAACCAAA 59.662 41.667 0.00 0.00 0.00 3.28
4901 6155 3.251004 CACAGGAAGCTGACTAAACAACC 59.749 47.826 0.00 0.00 0.00 3.77
4967 6222 5.471797 TGCAAATCGAGTCCAATTTCAACTA 59.528 36.000 0.00 0.00 0.00 2.24
4968 6223 4.278170 TGCAAATCGAGTCCAATTTCAACT 59.722 37.500 0.00 0.00 0.00 3.16
4969 6224 4.545610 TGCAAATCGAGTCCAATTTCAAC 58.454 39.130 0.00 0.00 0.00 3.18
4971 6226 4.844998 TTGCAAATCGAGTCCAATTTCA 57.155 36.364 0.00 0.00 0.00 2.69
4972 6227 5.401550 TCATTGCAAATCGAGTCCAATTTC 58.598 37.500 1.71 0.00 0.00 2.17
4973 6228 5.389859 TCATTGCAAATCGAGTCCAATTT 57.610 34.783 1.71 0.00 0.00 1.82
4981 6236 6.554419 TCCAACTATTTCATTGCAAATCGAG 58.446 36.000 1.71 0.00 0.00 4.04
4983 6238 6.554419 TCTCCAACTATTTCATTGCAAATCG 58.446 36.000 1.71 0.00 0.00 3.34
4997 6252 5.749462 CAAGGTTCCTCATTCTCCAACTAT 58.251 41.667 0.00 0.00 0.00 2.12
5003 6258 2.496899 TGCAAGGTTCCTCATTCTCC 57.503 50.000 0.00 0.00 0.00 3.71
5004 6259 4.012374 TGAATGCAAGGTTCCTCATTCTC 58.988 43.478 22.28 8.73 42.97 2.87
5031 6286 5.167845 GCAAGTGGTCTCTTTTGACAAAAA 58.832 37.500 14.04 5.39 38.61 1.94
5032 6287 4.381505 GGCAAGTGGTCTCTTTTGACAAAA 60.382 41.667 12.62 12.62 38.61 2.44
5033 6288 3.130340 GGCAAGTGGTCTCTTTTGACAAA 59.870 43.478 0.00 0.00 38.61 2.83
5034 6289 2.687935 GGCAAGTGGTCTCTTTTGACAA 59.312 45.455 0.00 0.00 38.61 3.18
5035 6290 2.297701 GGCAAGTGGTCTCTTTTGACA 58.702 47.619 0.00 0.00 38.61 3.58
5036 6291 1.264288 CGGCAAGTGGTCTCTTTTGAC 59.736 52.381 0.00 0.00 36.31 3.18
5037 6292 1.593196 CGGCAAGTGGTCTCTTTTGA 58.407 50.000 0.00 0.00 0.00 2.69
5038 6293 0.593128 CCGGCAAGTGGTCTCTTTTG 59.407 55.000 0.00 0.00 0.00 2.44
5039 6294 0.472471 TCCGGCAAGTGGTCTCTTTT 59.528 50.000 0.00 0.00 0.00 2.27
5040 6295 0.693049 ATCCGGCAAGTGGTCTCTTT 59.307 50.000 0.00 0.00 0.00 2.52
5041 6296 0.250513 GATCCGGCAAGTGGTCTCTT 59.749 55.000 0.00 0.00 0.00 2.85
5042 6297 1.901085 GATCCGGCAAGTGGTCTCT 59.099 57.895 0.00 0.00 0.00 3.10
5043 6298 1.519455 CGATCCGGCAAGTGGTCTC 60.519 63.158 0.00 0.00 0.00 3.36
5044 6299 1.541310 TTCGATCCGGCAAGTGGTCT 61.541 55.000 0.00 0.00 0.00 3.85
5045 6300 0.672401 TTTCGATCCGGCAAGTGGTC 60.672 55.000 0.00 0.00 0.00 4.02
5046 6301 0.035439 ATTTCGATCCGGCAAGTGGT 60.035 50.000 0.00 0.00 0.00 4.16
5047 6302 0.378257 CATTTCGATCCGGCAAGTGG 59.622 55.000 0.00 0.00 0.00 4.00
5048 6303 1.062587 GTCATTTCGATCCGGCAAGTG 59.937 52.381 0.00 0.00 0.00 3.16
5049 6304 1.338674 TGTCATTTCGATCCGGCAAGT 60.339 47.619 0.00 0.00 0.00 3.16
5050 6305 1.368641 TGTCATTTCGATCCGGCAAG 58.631 50.000 0.00 0.00 0.00 4.01
5051 6306 1.814793 TTGTCATTTCGATCCGGCAA 58.185 45.000 0.00 0.00 0.00 4.52
5052 6307 1.814793 TTTGTCATTTCGATCCGGCA 58.185 45.000 0.00 0.00 0.00 5.69
5053 6308 2.911819 TTTTGTCATTTCGATCCGGC 57.088 45.000 0.00 0.00 0.00 6.13
5070 6325 9.745018 TCAATCTAATTCAGAGATGGTCTTTTT 57.255 29.630 0.00 0.00 36.48 1.94
5071 6326 9.171877 GTCAATCTAATTCAGAGATGGTCTTTT 57.828 33.333 0.00 0.00 36.48 2.27
5072 6327 8.324306 TGTCAATCTAATTCAGAGATGGTCTTT 58.676 33.333 0.00 0.00 36.48 2.52
5073 6328 7.855375 TGTCAATCTAATTCAGAGATGGTCTT 58.145 34.615 0.00 0.00 36.48 3.01
5074 6329 7.429374 TGTCAATCTAATTCAGAGATGGTCT 57.571 36.000 0.00 0.00 36.48 3.85
5075 6330 8.498054 TTTGTCAATCTAATTCAGAGATGGTC 57.502 34.615 0.00 0.00 36.48 4.02
5076 6331 8.868522 TTTTGTCAATCTAATTCAGAGATGGT 57.131 30.769 0.00 0.00 36.48 3.55
5077 6332 9.170734 TCTTTTGTCAATCTAATTCAGAGATGG 57.829 33.333 0.00 0.00 36.48 3.51
5080 6335 9.429359 GTCTCTTTTGTCAATCTAATTCAGAGA 57.571 33.333 0.00 0.00 36.48 3.10
5081 6336 8.663911 GGTCTCTTTTGTCAATCTAATTCAGAG 58.336 37.037 0.00 0.00 36.48 3.35
5082 6337 7.607991 GGGTCTCTTTTGTCAATCTAATTCAGA 59.392 37.037 0.00 0.00 37.79 3.27
5083 6338 7.148171 GGGGTCTCTTTTGTCAATCTAATTCAG 60.148 40.741 0.00 0.00 0.00 3.02
5084 6339 6.659242 GGGGTCTCTTTTGTCAATCTAATTCA 59.341 38.462 0.00 0.00 0.00 2.57
5085 6340 6.095580 GGGGGTCTCTTTTGTCAATCTAATTC 59.904 42.308 0.00 0.00 0.00 2.17
5086 6341 5.952347 GGGGGTCTCTTTTGTCAATCTAATT 59.048 40.000 0.00 0.00 0.00 1.40
5087 6342 5.254032 AGGGGGTCTCTTTTGTCAATCTAAT 59.746 40.000 0.00 0.00 0.00 1.73
5088 6343 4.601857 AGGGGGTCTCTTTTGTCAATCTAA 59.398 41.667 0.00 0.00 0.00 2.10
5089 6344 4.175962 AGGGGGTCTCTTTTGTCAATCTA 58.824 43.478 0.00 0.00 0.00 1.98
5090 6345 2.989571 AGGGGGTCTCTTTTGTCAATCT 59.010 45.455 0.00 0.00 0.00 2.40
5091 6346 3.348119 GAGGGGGTCTCTTTTGTCAATC 58.652 50.000 0.00 0.00 39.38 2.67
5092 6347 2.290323 CGAGGGGGTCTCTTTTGTCAAT 60.290 50.000 0.00 0.00 40.30 2.57
5093 6348 1.071699 CGAGGGGGTCTCTTTTGTCAA 59.928 52.381 0.00 0.00 40.30 3.18
5094 6349 0.685097 CGAGGGGGTCTCTTTTGTCA 59.315 55.000 0.00 0.00 40.30 3.58
5095 6350 0.036294 CCGAGGGGGTCTCTTTTGTC 60.036 60.000 0.00 0.00 40.30 3.18
5096 6351 2.067197 CCGAGGGGGTCTCTTTTGT 58.933 57.895 0.00 0.00 40.30 2.83
5204 6459 2.184322 GAATCCTGTCGCCAGCGA 59.816 61.111 11.27 11.27 46.87 4.93
5205 6460 2.892425 GGAATCCTGTCGCCAGCG 60.892 66.667 5.50 5.50 37.38 5.18
5206 6461 1.817099 CTGGAATCCTGTCGCCAGC 60.817 63.158 0.00 0.00 41.17 4.85
5207 6462 1.153289 CCTGGAATCCTGTCGCCAG 60.153 63.158 0.00 0.00 45.81 4.85
5208 6463 2.989639 CCTGGAATCCTGTCGCCA 59.010 61.111 0.00 0.00 0.00 5.69
5209 6464 2.514824 GCCTGGAATCCTGTCGCC 60.515 66.667 0.00 0.00 0.00 5.54
5210 6465 2.892425 CGCCTGGAATCCTGTCGC 60.892 66.667 0.00 0.00 0.00 5.19
5211 6466 2.202932 CCGCCTGGAATCCTGTCG 60.203 66.667 2.61 2.61 37.49 4.35
5212 6467 2.514824 GCCGCCTGGAATCCTGTC 60.515 66.667 0.00 0.00 37.49 3.51
5213 6468 2.905996 TTGCCGCCTGGAATCCTGT 61.906 57.895 0.00 0.00 37.49 4.00
5214 6469 2.045045 TTGCCGCCTGGAATCCTG 60.045 61.111 0.00 0.00 37.49 3.86
5215 6470 2.044946 GTTGCCGCCTGGAATCCT 60.045 61.111 0.00 0.00 37.49 3.24
5216 6471 3.508840 CGTTGCCGCCTGGAATCC 61.509 66.667 0.00 0.00 37.49 3.01
5217 6472 3.508840 CCGTTGCCGCCTGGAATC 61.509 66.667 0.00 0.00 37.49 2.52
5218 6473 3.561120 TTCCGTTGCCGCCTGGAAT 62.561 57.895 0.00 0.00 35.64 3.01
5219 6474 4.257654 TTCCGTTGCCGCCTGGAA 62.258 61.111 0.00 4.46 38.13 3.53
5222 6477 3.726517 CTGTTCCGTTGCCGCCTG 61.727 66.667 0.00 0.00 0.00 4.85
5223 6478 4.250305 ACTGTTCCGTTGCCGCCT 62.250 61.111 0.00 0.00 0.00 5.52
5224 6479 4.025401 CACTGTTCCGTTGCCGCC 62.025 66.667 0.00 0.00 0.00 6.13
5225 6480 2.970324 TCACTGTTCCGTTGCCGC 60.970 61.111 0.00 0.00 0.00 6.53
5226 6481 1.594293 AGTCACTGTTCCGTTGCCG 60.594 57.895 0.00 0.00 0.00 5.69
5227 6482 1.507141 CCAGTCACTGTTCCGTTGCC 61.507 60.000 3.56 0.00 0.00 4.52
5228 6483 0.814010 ACCAGTCACTGTTCCGTTGC 60.814 55.000 3.56 0.00 0.00 4.17
5229 6484 1.202533 AGACCAGTCACTGTTCCGTTG 60.203 52.381 3.56 0.00 0.00 4.10
5230 6485 1.120530 AGACCAGTCACTGTTCCGTT 58.879 50.000 3.56 0.00 0.00 4.44
5231 6486 0.389391 CAGACCAGTCACTGTTCCGT 59.611 55.000 3.56 0.00 0.00 4.69
5232 6487 0.319900 CCAGACCAGTCACTGTTCCG 60.320 60.000 3.56 0.00 32.93 4.30
5233 6488 0.759346 ACCAGACCAGTCACTGTTCC 59.241 55.000 3.56 0.00 32.93 3.62
5234 6489 1.541233 CCACCAGACCAGTCACTGTTC 60.541 57.143 3.56 0.00 32.93 3.18
5235 6490 0.469917 CCACCAGACCAGTCACTGTT 59.530 55.000 3.56 0.00 32.93 3.16
5236 6491 1.410850 CCCACCAGACCAGTCACTGT 61.411 60.000 3.56 0.00 32.93 3.55
5237 6492 1.372683 CCCACCAGACCAGTCACTG 59.627 63.158 0.00 0.00 0.00 3.66
5238 6493 2.520536 GCCCACCAGACCAGTCACT 61.521 63.158 0.00 0.00 0.00 3.41
5239 6494 2.032681 GCCCACCAGACCAGTCAC 59.967 66.667 0.00 0.00 0.00 3.67
5240 6495 3.249189 GGCCCACCAGACCAGTCA 61.249 66.667 0.00 0.00 35.26 3.41
5241 6496 3.249189 TGGCCCACCAGACCAGTC 61.249 66.667 0.00 0.00 42.67 3.51
5256 6511 4.418401 CAAATGGTGGCGGCGTGG 62.418 66.667 9.37 0.00 0.00 4.94
5257 6512 3.326889 CTCAAATGGTGGCGGCGTG 62.327 63.158 9.37 0.00 0.00 5.34
5258 6513 3.055719 CTCAAATGGTGGCGGCGT 61.056 61.111 9.37 0.00 0.00 5.68
5259 6514 3.814268 CCTCAAATGGTGGCGGCG 61.814 66.667 0.51 0.51 0.00 6.46
5260 6515 4.133796 GCCTCAAATGGTGGCGGC 62.134 66.667 0.00 0.00 45.35 6.53
5265 6520 3.814268 CGGCCGCCTCAAATGGTG 61.814 66.667 14.67 0.00 37.35 4.17
5279 6534 4.394712 AGCAGGTACAGTGGCGGC 62.395 66.667 0.00 0.00 0.00 6.53
5280 6535 2.434884 CAGCAGGTACAGTGGCGG 60.435 66.667 0.00 0.00 0.00 6.13
5281 6536 3.121030 GCAGCAGGTACAGTGGCG 61.121 66.667 0.00 0.00 0.00 5.69
5282 6537 3.121030 CGCAGCAGGTACAGTGGC 61.121 66.667 0.00 0.00 0.00 5.01
5302 6557 4.063967 TAGCAGTGTGTCGGCCCG 62.064 66.667 0.00 0.00 37.96 6.13
5303 6558 2.434359 GTAGCAGTGTGTCGGCCC 60.434 66.667 0.00 0.00 37.96 5.80
5304 6559 1.738099 CAGTAGCAGTGTGTCGGCC 60.738 63.158 0.00 0.00 37.96 6.13
5305 6560 2.383527 GCAGTAGCAGTGTGTCGGC 61.384 63.158 0.00 0.00 41.58 5.54
5306 6561 1.738099 GGCAGTAGCAGTGTGTCGG 60.738 63.158 0.00 0.00 44.61 4.79
5307 6562 2.088763 CGGCAGTAGCAGTGTGTCG 61.089 63.158 0.00 0.00 44.61 4.35
5308 6563 2.383527 GCGGCAGTAGCAGTGTGTC 61.384 63.158 0.00 0.00 44.61 3.67
5309 6564 2.357517 GCGGCAGTAGCAGTGTGT 60.358 61.111 0.00 0.00 44.61 3.72
5310 6565 2.357396 TGCGGCAGTAGCAGTGTG 60.357 61.111 0.00 0.00 44.61 3.82
5311 6566 2.357517 GTGCGGCAGTAGCAGTGT 60.358 61.111 1.18 0.00 46.10 3.55
5312 6567 3.481903 CGTGCGGCAGTAGCAGTG 61.482 66.667 1.18 0.00 46.10 3.66
5360 6615 4.082523 TACAGTGCCAGCCGCCTC 62.083 66.667 0.00 0.00 36.24 4.70
5361 6616 4.087892 CTACAGTGCCAGCCGCCT 62.088 66.667 0.00 0.00 36.24 5.52
5363 6618 4.767255 AGCTACAGTGCCAGCCGC 62.767 66.667 12.46 0.00 38.61 6.53
5364 6619 2.816958 CAGCTACAGTGCCAGCCG 60.817 66.667 12.46 0.70 38.61 5.52
5365 6620 2.437359 CCAGCTACAGTGCCAGCC 60.437 66.667 12.46 0.00 38.61 4.85
5366 6621 2.037136 CACCAGCTACAGTGCCAGC 61.037 63.158 8.87 8.87 38.09 4.85
5367 6622 1.376424 CCACCAGCTACAGTGCCAG 60.376 63.158 5.42 0.00 32.48 4.85
5368 6623 2.749682 CCACCAGCTACAGTGCCA 59.250 61.111 5.42 0.00 32.48 4.92
5369 6624 2.747855 GCCACCAGCTACAGTGCC 60.748 66.667 5.42 0.00 38.99 5.01
5370 6625 0.962356 AATGCCACCAGCTACAGTGC 60.962 55.000 5.42 2.98 44.23 4.40
5371 6626 0.806868 CAATGCCACCAGCTACAGTG 59.193 55.000 4.19 4.19 44.23 3.66
5372 6627 0.401738 ACAATGCCACCAGCTACAGT 59.598 50.000 0.00 0.00 44.23 3.55
5373 6628 2.401583 TACAATGCCACCAGCTACAG 57.598 50.000 0.00 0.00 44.23 2.74
5374 6629 3.364460 AATACAATGCCACCAGCTACA 57.636 42.857 0.00 0.00 44.23 2.74
5375 6630 4.821805 ACATAATACAATGCCACCAGCTAC 59.178 41.667 0.00 0.00 44.23 3.58
5376 6631 4.821260 CACATAATACAATGCCACCAGCTA 59.179 41.667 0.00 0.00 44.23 3.32
5377 6632 3.633525 CACATAATACAATGCCACCAGCT 59.366 43.478 0.00 0.00 44.23 4.24
5378 6633 3.381272 ACACATAATACAATGCCACCAGC 59.619 43.478 0.00 0.00 44.14 4.85
5379 6634 5.008613 GGTACACATAATACAATGCCACCAG 59.991 44.000 0.00 0.00 30.93 4.00
5380 6635 4.884744 GGTACACATAATACAATGCCACCA 59.115 41.667 0.00 0.00 30.93 4.17
5381 6636 4.884744 TGGTACACATAATACAATGCCACC 59.115 41.667 0.00 0.00 0.00 4.61
5403 6658 0.386352 CAAATGCGCTCCAGTGTGTG 60.386 55.000 9.73 0.00 0.00 3.82
5404 6659 1.951510 CAAATGCGCTCCAGTGTGT 59.048 52.632 9.73 0.00 0.00 3.72
5405 6660 1.443194 GCAAATGCGCTCCAGTGTG 60.443 57.895 9.73 0.00 0.00 3.82
5406 6661 2.956987 GCAAATGCGCTCCAGTGT 59.043 55.556 9.73 0.00 0.00 3.55
5416 6671 0.313672 TGTCCGGTTCAAGCAAATGC 59.686 50.000 0.00 0.00 42.49 3.56
5417 6672 3.731867 GCTATGTCCGGTTCAAGCAAATG 60.732 47.826 0.00 0.00 0.00 2.32
5418 6673 2.423538 GCTATGTCCGGTTCAAGCAAAT 59.576 45.455 0.00 0.00 0.00 2.32
5419 6674 1.810151 GCTATGTCCGGTTCAAGCAAA 59.190 47.619 0.00 0.00 0.00 3.68
5420 6675 1.271108 TGCTATGTCCGGTTCAAGCAA 60.271 47.619 21.89 13.57 37.05 3.91
5421 6676 0.323302 TGCTATGTCCGGTTCAAGCA 59.677 50.000 21.13 21.13 37.62 3.91
5422 6677 1.009829 CTGCTATGTCCGGTTCAAGC 58.990 55.000 0.00 13.39 0.00 4.01
5423 6678 1.009829 GCTGCTATGTCCGGTTCAAG 58.990 55.000 0.00 4.68 0.00 3.02
5424 6679 0.613260 AGCTGCTATGTCCGGTTCAA 59.387 50.000 0.00 0.00 0.00 2.69
5425 6680 0.613260 AAGCTGCTATGTCCGGTTCA 59.387 50.000 0.90 2.56 0.00 3.18
5426 6681 1.739067 AAAGCTGCTATGTCCGGTTC 58.261 50.000 0.90 0.00 0.00 3.62
5427 6682 2.200373 AAAAGCTGCTATGTCCGGTT 57.800 45.000 0.90 0.00 0.00 4.44
5428 6683 1.812571 CAAAAAGCTGCTATGTCCGGT 59.187 47.619 0.90 0.00 0.00 5.28
5429 6684 1.133025 CCAAAAAGCTGCTATGTCCGG 59.867 52.381 0.90 0.00 0.00 5.14
5430 6685 1.812571 ACCAAAAAGCTGCTATGTCCG 59.187 47.619 0.90 0.00 0.00 4.79
5431 6686 2.159517 CGACCAAAAAGCTGCTATGTCC 60.160 50.000 0.90 0.00 0.00 4.02
5432 6687 2.484264 ACGACCAAAAAGCTGCTATGTC 59.516 45.455 0.90 4.89 0.00 3.06
5433 6688 2.484264 GACGACCAAAAAGCTGCTATGT 59.516 45.455 0.90 0.00 0.00 2.29
5434 6689 2.159517 GGACGACCAAAAAGCTGCTATG 60.160 50.000 0.90 2.73 35.97 2.23
5435 6690 2.084546 GGACGACCAAAAAGCTGCTAT 58.915 47.619 0.90 0.00 35.97 2.97
5436 6691 1.202710 TGGACGACCAAAAAGCTGCTA 60.203 47.619 3.49 0.00 43.91 3.49
5437 6692 0.465460 TGGACGACCAAAAAGCTGCT 60.465 50.000 3.49 0.00 43.91 4.24
5438 6693 2.029743 TGGACGACCAAAAAGCTGC 58.970 52.632 3.49 0.00 43.91 5.25
5447 6702 1.271856 TTAGGCTGATTGGACGACCA 58.728 50.000 1.37 1.37 45.34 4.02
5448 6703 2.158957 TGATTAGGCTGATTGGACGACC 60.159 50.000 0.00 0.00 0.00 4.79
5449 6704 2.866762 GTGATTAGGCTGATTGGACGAC 59.133 50.000 0.00 0.00 0.00 4.34
5450 6705 2.766263 AGTGATTAGGCTGATTGGACGA 59.234 45.455 0.00 0.00 0.00 4.20
5451 6706 3.185246 AGTGATTAGGCTGATTGGACG 57.815 47.619 0.00 0.00 0.00 4.79
5452 6707 5.303078 TCTCTAGTGATTAGGCTGATTGGAC 59.697 44.000 0.00 0.00 0.00 4.02
5453 6708 5.458595 TCTCTAGTGATTAGGCTGATTGGA 58.541 41.667 0.00 0.00 0.00 3.53
5454 6709 5.798125 TCTCTAGTGATTAGGCTGATTGG 57.202 43.478 0.00 0.00 0.00 3.16
5455 6710 6.990798 TCATCTCTAGTGATTAGGCTGATTG 58.009 40.000 4.54 0.00 0.00 2.67
5456 6711 7.675195 AGATCATCTCTAGTGATTAGGCTGATT 59.325 37.037 4.54 0.00 36.49 2.57
5457 6712 7.184161 AGATCATCTCTAGTGATTAGGCTGAT 58.816 38.462 4.54 5.50 36.49 2.90
5458 6713 6.551085 AGATCATCTCTAGTGATTAGGCTGA 58.449 40.000 4.54 0.93 36.49 4.26
5459 6714 6.839124 AGATCATCTCTAGTGATTAGGCTG 57.161 41.667 4.54 0.00 36.49 4.85
5460 6715 7.122650 GCTAAGATCATCTCTAGTGATTAGGCT 59.877 40.741 4.54 0.00 36.49 4.58
5461 6716 7.122650 AGCTAAGATCATCTCTAGTGATTAGGC 59.877 40.741 4.54 4.13 36.49 3.93
5462 6717 8.579850 AGCTAAGATCATCTCTAGTGATTAGG 57.420 38.462 4.54 0.00 36.49 2.69
5464 6719 9.173021 GCTAGCTAAGATCATCTCTAGTGATTA 57.827 37.037 7.70 0.00 36.49 1.75
5465 6720 7.669304 TGCTAGCTAAGATCATCTCTAGTGATT 59.331 37.037 17.23 0.00 36.49 2.57
5466 6721 7.121168 GTGCTAGCTAAGATCATCTCTAGTGAT 59.879 40.741 17.23 1.36 38.94 3.06
5467 6722 6.429692 GTGCTAGCTAAGATCATCTCTAGTGA 59.570 42.308 17.23 0.00 32.41 3.41
5468 6723 6.349280 GGTGCTAGCTAAGATCATCTCTAGTG 60.349 46.154 17.23 0.00 32.41 2.74
5469 6724 5.710099 GGTGCTAGCTAAGATCATCTCTAGT 59.290 44.000 17.23 0.00 32.41 2.57
5470 6725 5.163764 CGGTGCTAGCTAAGATCATCTCTAG 60.164 48.000 17.23 5.00 32.41 2.43
5471 6726 4.697828 CGGTGCTAGCTAAGATCATCTCTA 59.302 45.833 17.23 0.00 32.41 2.43
5472 6727 3.505680 CGGTGCTAGCTAAGATCATCTCT 59.494 47.826 17.23 0.00 34.96 3.10
5473 6728 3.366883 CCGGTGCTAGCTAAGATCATCTC 60.367 52.174 17.23 0.00 0.00 2.75
5474 6729 2.560542 CCGGTGCTAGCTAAGATCATCT 59.439 50.000 17.23 0.00 0.00 2.90
5475 6730 2.558795 TCCGGTGCTAGCTAAGATCATC 59.441 50.000 17.23 0.00 0.00 2.92
5476 6731 2.598565 TCCGGTGCTAGCTAAGATCAT 58.401 47.619 17.23 0.00 0.00 2.45
5477 6732 2.067365 TCCGGTGCTAGCTAAGATCA 57.933 50.000 17.23 0.00 0.00 2.92
5478 6733 3.454371 TTTCCGGTGCTAGCTAAGATC 57.546 47.619 17.23 0.00 0.00 2.75
5479 6734 3.733337 CATTTCCGGTGCTAGCTAAGAT 58.267 45.455 17.23 0.00 0.00 2.40
5480 6735 2.741878 GCATTTCCGGTGCTAGCTAAGA 60.742 50.000 17.23 4.79 39.45 2.10
5481 6736 1.599542 GCATTTCCGGTGCTAGCTAAG 59.400 52.381 17.23 6.60 39.45 2.18
5482 6737 1.065782 TGCATTTCCGGTGCTAGCTAA 60.066 47.619 17.23 0.00 42.92 3.09
5483 6738 0.539518 TGCATTTCCGGTGCTAGCTA 59.460 50.000 17.23 0.00 42.92 3.32
5484 6739 0.107017 ATGCATTTCCGGTGCTAGCT 60.107 50.000 17.23 0.00 42.92 3.32
5485 6740 0.308993 GATGCATTTCCGGTGCTAGC 59.691 55.000 15.67 8.10 42.92 3.42
5486 6741 1.959042 AGATGCATTTCCGGTGCTAG 58.041 50.000 15.67 0.00 42.92 3.42
5487 6742 3.111853 CTAGATGCATTTCCGGTGCTA 57.888 47.619 15.67 4.09 42.92 3.49
5488 6743 1.959042 CTAGATGCATTTCCGGTGCT 58.041 50.000 15.67 2.75 42.92 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.