Multiple sequence alignment - TraesCS2B01G558200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G558200 chr2B 100.000 4883 0 0 1 4883 752485998 752490880 0.000000e+00 9018.0
1 TraesCS2B01G558200 chr2B 91.111 360 23 1 3328 3678 752489148 752489507 3.420000e-131 479.0
2 TraesCS2B01G558200 chr2B 91.111 360 23 1 3151 3510 752489325 752489675 3.420000e-131 479.0
3 TraesCS2B01G558200 chr2B 86.215 428 26 17 597 992 752416414 752416840 2.700000e-117 433.0
4 TraesCS2B01G558200 chr2B 91.351 185 16 0 1081 1265 752459429 752459613 2.260000e-63 254.0
5 TraesCS2B01G558200 chr2B 89.071 183 11 1 3505 3678 752489148 752489330 8.230000e-53 219.0
6 TraesCS2B01G558200 chr2B 89.071 183 11 1 3151 3333 752489502 752489675 8.230000e-53 219.0
7 TraesCS2B01G558200 chr2B 81.858 226 35 4 2775 3000 752488625 752488844 8.350000e-43 185.0
8 TraesCS2B01G558200 chr2B 81.858 226 35 4 2628 2847 752488772 752488997 8.350000e-43 185.0
9 TraesCS2B01G558200 chr2B 98.077 104 1 1 2075 2177 584129402 584129505 3.880000e-41 180.0
10 TraesCS2B01G558200 chr2D 96.552 2726 77 12 2170 4883 616950244 616952964 0.000000e+00 4497.0
11 TraesCS2B01G558200 chr2D 94.741 1312 53 10 778 2076 616948937 616950245 0.000000e+00 2026.0
12 TraesCS2B01G558200 chr2D 91.389 360 22 1 3151 3510 616951402 616951752 7.350000e-133 484.0
13 TraesCS2B01G558200 chr2D 90.833 360 24 1 3328 3678 616951225 616951584 1.590000e-129 473.0
14 TraesCS2B01G558200 chr2D 89.071 183 11 1 3151 3333 616951579 616951752 8.230000e-53 219.0
15 TraesCS2B01G558200 chr2D 88.525 183 12 1 3505 3678 616951225 616951407 3.830000e-51 213.0
16 TraesCS2B01G558200 chr2D 77.136 398 54 23 5 385 616948107 616948484 3.860000e-46 196.0
17 TraesCS2B01G558200 chr2D 80.088 226 39 5 2775 3000 616950702 616950921 3.910000e-36 163.0
18 TraesCS2B01G558200 chr2A 96.209 2743 72 14 2171 4883 746966426 746969166 0.000000e+00 4460.0
19 TraesCS2B01G558200 chr2A 87.066 1353 101 35 597 1897 746964917 746966247 0.000000e+00 1461.0
20 TraesCS2B01G558200 chr2A 91.667 360 21 1 3328 3678 746967424 746967783 1.580000e-134 490.0
21 TraesCS2B01G558200 chr2A 90.833 360 24 1 3151 3510 746967601 746967951 1.590000e-129 473.0
22 TraesCS2B01G558200 chr2A 89.617 183 10 1 3505 3678 746967424 746967606 1.770000e-54 224.0
23 TraesCS2B01G558200 chr2A 88.525 183 12 1 3151 3333 746967778 746967951 3.830000e-51 213.0
24 TraesCS2B01G558200 chr2A 73.031 508 76 37 3 469 746945120 746945607 6.640000e-24 122.0
25 TraesCS2B01G558200 chr2A 80.342 117 17 4 196 311 746938248 746938359 3.130000e-12 84.2
26 TraesCS2B01G558200 chr2A 100.000 28 0 0 629 656 746945876 746945903 9.000000e-03 52.8
27 TraesCS2B01G558200 chr1B 95.690 116 5 0 2063 2178 429610626 429610741 2.320000e-43 187.0
28 TraesCS2B01G558200 chr5D 100.000 100 0 0 2072 2171 335127549 335127648 8.350000e-43 185.0
29 TraesCS2B01G558200 chr4B 96.460 113 3 1 2070 2182 32922790 32922901 8.350000e-43 185.0
30 TraesCS2B01G558200 chr4B 96.296 108 4 0 2074 2181 538218847 538218740 1.400000e-40 178.0
31 TraesCS2B01G558200 chr4D 96.364 110 3 1 2068 2176 293864651 293864542 3.880000e-41 180.0
32 TraesCS2B01G558200 chr6B 97.170 106 2 1 2069 2174 424080604 424080500 1.400000e-40 178.0
33 TraesCS2B01G558200 chr6B 97.170 106 2 1 2069 2174 424303317 424303213 1.400000e-40 178.0
34 TraesCS2B01G558200 chr6D 98.020 101 1 1 2075 2174 466538228 466538128 1.810000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G558200 chr2B 752485998 752490880 4882 False 1540.571429 9018 89.154286 1 4883 7 chr2B.!!$F4 4882
1 TraesCS2B01G558200 chr2D 616948107 616952964 4857 False 1033.875000 4497 88.541875 5 4883 8 chr2D.!!$F1 4878
2 TraesCS2B01G558200 chr2A 746964917 746969166 4249 False 1220.166667 4460 90.652833 597 4883 6 chr2A.!!$F3 4286

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 334 0.099968 CAGGCTGCACCGATTGATTG 59.900 55.0 0.0 0.0 46.52 2.67 F
463 480 0.107945 AAGAAGAGACAGATGGCCGC 60.108 55.0 0.0 0.0 0.00 6.53 F
482 499 0.325933 CCACAGCACTTCATCTGGGA 59.674 55.0 0.0 0.0 35.83 4.37 F
1744 1910 0.793861 GCATGTGGCTTGTGCAAATG 59.206 50.0 0.0 0.0 41.91 2.32 F
2488 2684 0.548682 AGGGCCTGACCAGATGTCTT 60.549 55.0 4.5 0.0 44.75 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2150 2346 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.0 0.00 1.40 R
2153 2349 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.0 0.00 3.28 R
2154 2350 3.339713 AATATACTCCCTCCGTCCCAA 57.660 47.619 0.00 0.0 0.00 4.12 R
3682 3899 1.831580 ATCTCTTGGTTGGCTTCAGC 58.168 50.000 0.00 0.0 41.14 4.26 R
4172 4390 1.941668 GCAGCTAGGTGTTCACAGGAC 60.942 57.143 22.21 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.464157 GACTCTTGTCCTGGGTGAAG 57.536 55.000 0.00 0.00 37.24 3.02
22 23 2.509964 ACTCTTGTCCTGGGTGAAGTTT 59.490 45.455 0.00 0.00 0.00 2.66
24 25 2.777692 TCTTGTCCTGGGTGAAGTTTCT 59.222 45.455 0.00 0.00 0.00 2.52
25 26 2.930826 TGTCCTGGGTGAAGTTTCTC 57.069 50.000 0.00 0.00 0.00 2.87
27 28 2.711009 TGTCCTGGGTGAAGTTTCTCAT 59.289 45.455 0.00 0.00 0.00 2.90
34 35 3.441572 GGGTGAAGTTTCTCATGGTCATG 59.558 47.826 4.67 4.67 40.09 3.07
39 40 4.833478 AGTTTCTCATGGTCATGTAGCT 57.167 40.909 10.32 0.00 39.72 3.32
40 41 5.939764 AGTTTCTCATGGTCATGTAGCTA 57.060 39.130 10.32 0.00 39.72 3.32
54 55 7.499232 GGTCATGTAGCTATTTGTTACCAGAAT 59.501 37.037 0.00 0.00 32.34 2.40
68 69 8.153221 TGTTACCAGAATACTTCCCATTTCTA 57.847 34.615 0.00 0.00 0.00 2.10
70 71 6.253946 ACCAGAATACTTCCCATTTCTAGG 57.746 41.667 0.00 0.00 0.00 3.02
88 89 0.831307 GGATGGGTAGGCTCTTCGTT 59.169 55.000 0.00 0.00 0.00 3.85
94 95 3.445096 TGGGTAGGCTCTTCGTTAACTAC 59.555 47.826 3.71 0.00 0.00 2.73
111 112 8.819152 GTTAACTACGACTGATTAGTGAGTAC 57.181 38.462 0.00 0.00 37.25 2.73
112 113 8.663911 GTTAACTACGACTGATTAGTGAGTACT 58.336 37.037 0.00 0.00 37.25 2.73
123 124 8.534333 TGATTAGTGAGTACTTGTTGATTGAC 57.466 34.615 0.00 0.00 38.36 3.18
158 159 8.397906 TCAGGTAATCTTCATAATTTGCTTTCG 58.602 33.333 0.00 0.00 0.00 3.46
159 160 7.645340 CAGGTAATCTTCATAATTTGCTTTCGG 59.355 37.037 0.00 0.00 0.00 4.30
161 162 7.644157 GGTAATCTTCATAATTTGCTTTCGGTC 59.356 37.037 0.00 0.00 0.00 4.79
164 165 4.593597 TCATAATTTGCTTTCGGTCGAC 57.406 40.909 7.13 7.13 0.00 4.20
168 169 0.318869 TTTGCTTTCGGTCGACGCTA 60.319 50.000 9.92 0.81 43.86 4.26
172 173 1.904144 CTTTCGGTCGACGCTATCAA 58.096 50.000 9.92 0.00 43.86 2.57
179 180 3.046390 GGTCGACGCTATCAAATCTGAG 58.954 50.000 9.92 0.00 34.23 3.35
181 182 3.971871 GTCGACGCTATCAAATCTGAGAG 59.028 47.826 0.00 0.00 42.71 3.20
182 183 3.628032 TCGACGCTATCAAATCTGAGAGT 59.372 43.478 0.00 0.00 41.99 3.24
185 186 3.715495 CGCTATCAAATCTGAGAGTGCT 58.285 45.455 0.00 0.00 42.62 4.40
186 187 4.864633 CGCTATCAAATCTGAGAGTGCTA 58.135 43.478 0.00 0.00 42.62 3.49
187 188 5.284864 CGCTATCAAATCTGAGAGTGCTAA 58.715 41.667 0.00 0.00 42.62 3.09
188 189 5.174761 CGCTATCAAATCTGAGAGTGCTAAC 59.825 44.000 0.00 0.00 42.62 2.34
189 190 6.279882 GCTATCAAATCTGAGAGTGCTAACT 58.720 40.000 0.00 0.00 41.99 2.24
201 202 3.891049 AGTGCTAACTCATGGGGAATTC 58.109 45.455 0.00 0.00 26.77 2.17
205 218 5.885912 GTGCTAACTCATGGGGAATTCTTTA 59.114 40.000 5.23 0.00 0.00 1.85
226 239 7.615365 TCTTTACTTAATGCAGGAACCATCATT 59.385 33.333 12.42 12.42 34.08 2.57
231 244 3.657398 TGCAGGAACCATCATTCTCAT 57.343 42.857 0.00 0.00 0.00 2.90
237 250 7.124599 TGCAGGAACCATCATTCTCATAAAATT 59.875 33.333 0.00 0.00 0.00 1.82
238 251 8.632679 GCAGGAACCATCATTCTCATAAAATTA 58.367 33.333 0.00 0.00 0.00 1.40
259 272 3.602390 ATTTTGTTGAACCGACGAGTG 57.398 42.857 0.00 0.00 0.00 3.51
264 277 2.798283 TGTTGAACCGACGAGTGATTTC 59.202 45.455 0.00 0.00 0.00 2.17
267 280 3.459145 TGAACCGACGAGTGATTTCAAA 58.541 40.909 0.00 0.00 0.00 2.69
268 281 4.062293 TGAACCGACGAGTGATTTCAAAT 58.938 39.130 0.00 0.00 0.00 2.32
270 283 5.697178 TGAACCGACGAGTGATTTCAAATAA 59.303 36.000 0.00 0.00 0.00 1.40
273 286 5.467399 ACCGACGAGTGATTTCAAATAACAA 59.533 36.000 0.16 0.00 0.00 2.83
278 291 9.612620 GACGAGTGATTTCAAATAACAAAGATT 57.387 29.630 0.16 0.00 0.00 2.40
296 309 7.973388 ACAAAGATTTTTCAACGATGTGAAGAA 59.027 29.630 0.00 0.00 38.69 2.52
311 324 2.938869 GAAGAATTCAACAGGCTGCAC 58.061 47.619 15.89 0.00 46.62 4.57
312 325 1.251251 AGAATTCAACAGGCTGCACC 58.749 50.000 15.89 0.00 39.61 5.01
321 334 0.099968 CAGGCTGCACCGATTGATTG 59.900 55.000 0.00 0.00 46.52 2.67
325 338 0.742505 CTGCACCGATTGATTGGCAT 59.257 50.000 0.00 0.00 34.49 4.40
338 351 5.818136 TGATTGGCATAGTAACTTCAAGC 57.182 39.130 0.00 0.00 0.00 4.01
346 363 5.300286 GCATAGTAACTTCAAGCCCATCATT 59.700 40.000 0.00 0.00 0.00 2.57
350 367 4.730949 AACTTCAAGCCCATCATTCATG 57.269 40.909 0.00 0.00 0.00 3.07
351 368 3.705051 ACTTCAAGCCCATCATTCATGT 58.295 40.909 0.00 0.00 0.00 3.21
363 380 5.334646 CCATCATTCATGTTGGATAGCTTCG 60.335 44.000 10.34 0.00 45.97 3.79
367 384 0.839946 ATGTTGGATAGCTTCGGCCT 59.160 50.000 0.00 0.00 43.01 5.19
368 385 0.618458 TGTTGGATAGCTTCGGCCTT 59.382 50.000 0.00 0.00 43.01 4.35
369 386 1.004277 TGTTGGATAGCTTCGGCCTTT 59.996 47.619 0.00 0.00 43.01 3.11
385 402 2.154462 CCTTTCGACTTGCCAGTTCAT 58.846 47.619 0.00 0.00 31.22 2.57
386 403 2.554032 CCTTTCGACTTGCCAGTTCATT 59.446 45.455 0.00 0.00 31.22 2.57
388 405 4.378459 CCTTTCGACTTGCCAGTTCATTAC 60.378 45.833 0.00 0.00 31.22 1.89
389 406 3.394674 TCGACTTGCCAGTTCATTACA 57.605 42.857 0.00 0.00 31.22 2.41
390 407 3.325870 TCGACTTGCCAGTTCATTACAG 58.674 45.455 0.00 0.00 31.22 2.74
391 408 3.006430 TCGACTTGCCAGTTCATTACAGA 59.994 43.478 0.00 0.00 31.22 3.41
392 409 3.935203 CGACTTGCCAGTTCATTACAGAT 59.065 43.478 0.00 0.00 31.22 2.90
396 413 6.476378 ACTTGCCAGTTCATTACAGATTAGT 58.524 36.000 0.00 0.00 0.00 2.24
397 414 6.942576 ACTTGCCAGTTCATTACAGATTAGTT 59.057 34.615 0.00 0.00 0.00 2.24
399 416 8.492673 TTGCCAGTTCATTACAGATTAGTTAG 57.507 34.615 0.00 0.00 0.00 2.34
400 417 7.847096 TGCCAGTTCATTACAGATTAGTTAGA 58.153 34.615 0.00 0.00 0.00 2.10
401 418 8.318412 TGCCAGTTCATTACAGATTAGTTAGAA 58.682 33.333 0.00 0.00 0.00 2.10
411 428 9.733556 TTACAGATTAGTTAGAAATGCTTTGGA 57.266 29.630 0.00 0.00 0.00 3.53
412 429 8.635765 ACAGATTAGTTAGAAATGCTTTGGAA 57.364 30.769 0.00 0.00 0.00 3.53
413 430 9.247861 ACAGATTAGTTAGAAATGCTTTGGAAT 57.752 29.630 0.00 0.00 0.00 3.01
423 440 8.366359 AGAAATGCTTTGGAATTAATGTACCT 57.634 30.769 0.00 0.00 0.00 3.08
424 441 8.253113 AGAAATGCTTTGGAATTAATGTACCTG 58.747 33.333 0.00 0.00 0.00 4.00
425 442 7.480760 AATGCTTTGGAATTAATGTACCTGT 57.519 32.000 0.00 0.00 0.00 4.00
426 443 6.909550 TGCTTTGGAATTAATGTACCTGTT 57.090 33.333 0.00 0.00 0.00 3.16
427 444 6.686630 TGCTTTGGAATTAATGTACCTGTTG 58.313 36.000 0.00 0.00 0.00 3.33
428 445 6.266558 TGCTTTGGAATTAATGTACCTGTTGT 59.733 34.615 0.00 0.00 0.00 3.32
429 446 7.448777 TGCTTTGGAATTAATGTACCTGTTGTA 59.551 33.333 0.00 0.00 0.00 2.41
430 447 8.466798 GCTTTGGAATTAATGTACCTGTTGTAT 58.533 33.333 0.00 0.00 0.00 2.29
431 448 9.787532 CTTTGGAATTAATGTACCTGTTGTATG 57.212 33.333 0.00 0.00 0.00 2.39
432 449 9.521841 TTTGGAATTAATGTACCTGTTGTATGA 57.478 29.630 0.00 0.00 0.00 2.15
433 450 8.731275 TGGAATTAATGTACCTGTTGTATGAG 57.269 34.615 0.00 0.00 0.00 2.90
434 451 8.325787 TGGAATTAATGTACCTGTTGTATGAGT 58.674 33.333 0.00 0.00 0.00 3.41
435 452 8.612619 GGAATTAATGTACCTGTTGTATGAGTG 58.387 37.037 0.00 0.00 0.00 3.51
436 453 9.162764 GAATTAATGTACCTGTTGTATGAGTGT 57.837 33.333 0.00 0.00 0.00 3.55
437 454 7.899178 TTAATGTACCTGTTGTATGAGTGTG 57.101 36.000 0.00 0.00 0.00 3.82
438 455 3.659786 TGTACCTGTTGTATGAGTGTGC 58.340 45.455 0.00 0.00 0.00 4.57
439 456 2.185004 ACCTGTTGTATGAGTGTGCC 57.815 50.000 0.00 0.00 0.00 5.01
440 457 1.419762 ACCTGTTGTATGAGTGTGCCA 59.580 47.619 0.00 0.00 0.00 4.92
441 458 2.158682 ACCTGTTGTATGAGTGTGCCAA 60.159 45.455 0.00 0.00 0.00 4.52
442 459 3.084039 CCTGTTGTATGAGTGTGCCAAT 58.916 45.455 0.00 0.00 0.00 3.16
443 460 3.127548 CCTGTTGTATGAGTGTGCCAATC 59.872 47.826 0.00 0.00 0.00 2.67
444 461 3.749226 TGTTGTATGAGTGTGCCAATCA 58.251 40.909 7.59 7.59 42.48 2.57
445 462 4.140536 TGTTGTATGAGTGTGCCAATCAA 58.859 39.130 8.92 0.00 41.64 2.57
446 463 4.216042 TGTTGTATGAGTGTGCCAATCAAG 59.784 41.667 8.92 0.00 41.64 3.02
447 464 4.284829 TGTATGAGTGTGCCAATCAAGA 57.715 40.909 8.92 0.00 41.64 3.02
448 465 4.650734 TGTATGAGTGTGCCAATCAAGAA 58.349 39.130 8.92 0.00 41.64 2.52
449 466 4.696877 TGTATGAGTGTGCCAATCAAGAAG 59.303 41.667 8.92 0.00 41.64 2.85
450 467 3.490439 TGAGTGTGCCAATCAAGAAGA 57.510 42.857 3.36 0.00 35.53 2.87
451 468 3.405831 TGAGTGTGCCAATCAAGAAGAG 58.594 45.455 3.36 0.00 35.53 2.85
452 469 3.071457 TGAGTGTGCCAATCAAGAAGAGA 59.929 43.478 3.36 0.00 35.53 3.10
453 470 3.406764 AGTGTGCCAATCAAGAAGAGAC 58.593 45.455 0.00 0.00 0.00 3.36
459 476 3.626670 GCCAATCAAGAAGAGACAGATGG 59.373 47.826 0.00 0.00 0.00 3.51
461 478 3.557228 ATCAAGAAGAGACAGATGGCC 57.443 47.619 0.00 0.00 0.00 5.36
463 480 0.107945 AAGAAGAGACAGATGGCCGC 60.108 55.000 0.00 0.00 0.00 6.53
468 485 2.821366 GACAGATGGCCGCCACAG 60.821 66.667 16.16 10.11 35.80 3.66
477 494 3.044059 GCCGCCACAGCACTTCATC 62.044 63.158 0.00 0.00 39.83 2.92
479 496 1.642037 CCGCCACAGCACTTCATCTG 61.642 60.000 0.00 0.00 39.83 2.90
482 499 0.325933 CCACAGCACTTCATCTGGGA 59.674 55.000 0.00 0.00 35.83 4.37
489 506 2.747799 GCACTTCATCTGGGAGGATTCC 60.748 54.545 0.00 0.00 43.23 3.01
493 510 4.293368 ACTTCATCTGGGAGGATTCCTTTT 59.707 41.667 6.68 0.00 43.49 2.27
495 512 6.011628 ACTTCATCTGGGAGGATTCCTTTTTA 60.012 38.462 6.68 0.00 43.49 1.52
497 514 6.367983 TCATCTGGGAGGATTCCTTTTTATG 58.632 40.000 6.68 7.89 43.49 1.90
498 515 5.796502 TCTGGGAGGATTCCTTTTTATGT 57.203 39.130 6.68 0.00 43.49 2.29
499 516 6.152638 TCTGGGAGGATTCCTTTTTATGTT 57.847 37.500 6.68 0.00 43.49 2.71
500 517 6.561294 TCTGGGAGGATTCCTTTTTATGTTT 58.439 36.000 6.68 0.00 43.49 2.83
502 519 7.512402 TCTGGGAGGATTCCTTTTTATGTTTTT 59.488 33.333 6.68 0.00 43.49 1.94
504 521 9.332713 TGGGAGGATTCCTTTTTATGTTTTTAT 57.667 29.630 6.68 0.00 43.49 1.40
547 606 9.256228 ACTTAATAGTCCAGATCAGTTTGTAGA 57.744 33.333 0.00 0.00 0.00 2.59
548 607 9.743057 CTTAATAGTCCAGATCAGTTTGTAGAG 57.257 37.037 0.00 0.00 0.00 2.43
549 608 7.726033 AATAGTCCAGATCAGTTTGTAGAGT 57.274 36.000 0.00 0.00 0.00 3.24
550 609 5.652994 AGTCCAGATCAGTTTGTAGAGTC 57.347 43.478 0.00 0.00 0.00 3.36
558 617 4.814147 TCAGTTTGTAGAGTCTGCTCATG 58.186 43.478 9.77 3.91 44.00 3.07
566 625 3.924144 AGAGTCTGCTCATGAACACTTC 58.076 45.455 0.00 0.00 44.00 3.01
567 626 3.323115 AGAGTCTGCTCATGAACACTTCA 59.677 43.478 0.00 0.00 44.00 3.02
568 627 3.661944 AGTCTGCTCATGAACACTTCAG 58.338 45.455 0.00 0.00 43.98 3.02
571 630 3.575687 TCTGCTCATGAACACTTCAGAGA 59.424 43.478 0.00 0.00 43.98 3.10
574 633 5.125356 TGCTCATGAACACTTCAGAGAAAA 58.875 37.500 0.00 0.72 43.98 2.29
575 634 5.589855 TGCTCATGAACACTTCAGAGAAAAA 59.410 36.000 0.00 0.00 43.98 1.94
576 635 6.141462 GCTCATGAACACTTCAGAGAAAAAG 58.859 40.000 0.00 0.00 43.98 2.27
583 642 8.234546 TGAACACTTCAGAGAAAAAGTTGTTAC 58.765 33.333 0.00 0.00 33.53 2.50
586 645 8.451748 ACACTTCAGAGAAAAAGTTGTTACTTC 58.548 33.333 0.00 0.00 43.74 3.01
588 647 8.884726 ACTTCAGAGAAAAAGTTGTTACTTCTC 58.115 33.333 2.60 2.60 43.74 2.87
611 712 6.325596 TCATGAAGATTCTTGTAGTGAGTCG 58.674 40.000 3.03 0.00 34.86 4.18
620 721 4.523173 TCTTGTAGTGAGTCGATTTCTGGT 59.477 41.667 0.00 0.00 0.00 4.00
624 725 5.650703 TGTAGTGAGTCGATTTCTGGTCATA 59.349 40.000 0.00 0.00 0.00 2.15
655 757 7.725844 ACTTGATTTTCCTGGTCAAAGATAAGT 59.274 33.333 0.00 4.71 32.08 2.24
731 833 7.112122 AGAGATGAATGTACCTATTTGTGCAA 58.888 34.615 0.00 0.00 34.50 4.08
751 853 8.450964 TGTGCAAATAGAAGTATAAAACTCAGC 58.549 33.333 0.00 0.00 37.50 4.26
754 856 8.814235 GCAAATAGAAGTATAAAACTCAGCGTA 58.186 33.333 0.00 0.00 37.50 4.42
760 862 6.716898 AGTATAAAACTCAGCGTAAACACC 57.283 37.500 0.00 0.00 30.33 4.16
761 863 4.657075 ATAAAACTCAGCGTAAACACCG 57.343 40.909 0.00 0.00 0.00 4.94
762 864 1.944032 AAACTCAGCGTAAACACCGT 58.056 45.000 0.00 0.00 0.00 4.83
769 871 2.239124 CGTAAACACCGTGTGCCGT 61.239 57.895 4.57 0.00 36.98 5.68
771 873 2.535788 TAAACACCGTGTGCCGTGC 61.536 57.895 4.57 0.00 36.98 5.34
953 1090 6.151144 GCAAGTAGCTTTTCCTTTCCAGAATA 59.849 38.462 0.00 0.00 41.15 1.75
1013 1150 1.446099 CACAGATGTCGTCCCGGTG 60.446 63.158 0.00 0.00 0.00 4.94
1086 1223 1.202394 TGCACTGCACACAAAATGGAC 60.202 47.619 0.00 0.00 31.71 4.02
1293 1430 2.203938 TCCCTCCAAGTCCGCCTT 60.204 61.111 0.00 0.00 0.00 4.35
1312 1449 4.127171 CCTTGAGGTATGGATACGGTTTG 58.873 47.826 0.00 0.00 42.51 2.93
1326 1470 3.084039 ACGGTTTGTCATGCATCAGAAT 58.916 40.909 0.00 0.00 0.00 2.40
1329 1473 4.616604 CGGTTTGTCATGCATCAGAATTGT 60.617 41.667 0.00 0.00 0.00 2.71
1389 1534 3.395607 TGCCAGTAGATTATGATTGCCCT 59.604 43.478 0.00 0.00 0.00 5.19
1464 1609 7.918562 CAGTAAGCTGAGTTTAGTCCTCTTATC 59.081 40.741 0.00 0.00 45.28 1.75
1473 1618 8.840200 AGTTTAGTCCTCTTATCCACTGAATA 57.160 34.615 0.00 0.00 0.00 1.75
1663 1829 8.335532 TCTAACCTCGATTTTCAATCAACATT 57.664 30.769 0.00 0.00 0.00 2.71
1671 1837 8.518702 TCGATTTTCAATCAACATTATGGTCAA 58.481 29.630 0.00 0.00 0.00 3.18
1744 1910 0.793861 GCATGTGGCTTGTGCAAATG 59.206 50.000 0.00 0.00 41.91 2.32
1793 1960 7.611770 ACAGATAGAACACAACTGCACTAATA 58.388 34.615 0.00 0.00 32.67 0.98
1794 1961 8.094548 ACAGATAGAACACAACTGCACTAATAA 58.905 33.333 0.00 0.00 32.67 1.40
1887 2054 9.929722 TTCAATATCGTAAAAGAATTCCATTCG 57.070 29.630 0.65 1.95 43.92 3.34
2000 2169 8.375506 TGATTTACAACCTAAGGATAGCTATGG 58.624 37.037 11.94 8.23 0.00 2.74
2048 2244 6.261603 CCACATGCAGAGCTTAAATTATCTGA 59.738 38.462 5.28 0.00 41.35 3.27
2078 2274 9.982651 TTCCATTAGTGTGCTTTATAGATACTC 57.017 33.333 0.00 0.00 0.00 2.59
2079 2275 8.585881 TCCATTAGTGTGCTTTATAGATACTCC 58.414 37.037 0.00 0.00 0.00 3.85
2080 2276 7.819900 CCATTAGTGTGCTTTATAGATACTCCC 59.180 40.741 0.00 0.00 0.00 4.30
2081 2277 8.589338 CATTAGTGTGCTTTATAGATACTCCCT 58.411 37.037 0.00 0.00 0.00 4.20
2082 2278 6.658188 AGTGTGCTTTATAGATACTCCCTC 57.342 41.667 0.00 0.00 0.00 4.30
2083 2279 5.540719 AGTGTGCTTTATAGATACTCCCTCC 59.459 44.000 0.00 0.00 0.00 4.30
2084 2280 4.523173 TGTGCTTTATAGATACTCCCTCCG 59.477 45.833 0.00 0.00 0.00 4.63
2085 2281 4.523558 GTGCTTTATAGATACTCCCTCCGT 59.476 45.833 0.00 0.00 0.00 4.69
2086 2282 4.765856 TGCTTTATAGATACTCCCTCCGTC 59.234 45.833 0.00 0.00 0.00 4.79
2087 2283 4.158209 GCTTTATAGATACTCCCTCCGTCC 59.842 50.000 0.00 0.00 0.00 4.79
2088 2284 5.572252 CTTTATAGATACTCCCTCCGTCCT 58.428 45.833 0.00 0.00 0.00 3.85
2089 2285 6.708885 TTTATAGATACTCCCTCCGTCCTA 57.291 41.667 0.00 0.00 0.00 2.94
2090 2286 6.708885 TTATAGATACTCCCTCCGTCCTAA 57.291 41.667 0.00 0.00 0.00 2.69
2091 2287 3.967467 AGATACTCCCTCCGTCCTAAA 57.033 47.619 0.00 0.00 0.00 1.85
2092 2288 4.261411 AGATACTCCCTCCGTCCTAAAA 57.739 45.455 0.00 0.00 0.00 1.52
2093 2289 4.817286 AGATACTCCCTCCGTCCTAAAAT 58.183 43.478 0.00 0.00 0.00 1.82
2094 2290 5.961897 AGATACTCCCTCCGTCCTAAAATA 58.038 41.667 0.00 0.00 0.00 1.40
2095 2291 6.379579 AGATACTCCCTCCGTCCTAAAATAA 58.620 40.000 0.00 0.00 0.00 1.40
2096 2292 6.494146 AGATACTCCCTCCGTCCTAAAATAAG 59.506 42.308 0.00 0.00 0.00 1.73
2097 2293 4.359996 ACTCCCTCCGTCCTAAAATAAGT 58.640 43.478 0.00 0.00 0.00 2.24
2098 2294 4.161754 ACTCCCTCCGTCCTAAAATAAGTG 59.838 45.833 0.00 0.00 0.00 3.16
2099 2295 4.098894 TCCCTCCGTCCTAAAATAAGTGT 58.901 43.478 0.00 0.00 0.00 3.55
2100 2296 4.161001 TCCCTCCGTCCTAAAATAAGTGTC 59.839 45.833 0.00 0.00 0.00 3.67
2101 2297 4.161754 CCCTCCGTCCTAAAATAAGTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
2102 2298 5.338137 CCCTCCGTCCTAAAATAAGTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2103 2299 5.581085 CCTCCGTCCTAAAATAAGTGTCTTG 59.419 44.000 0.00 0.00 0.00 3.02
2104 2300 6.349243 TCCGTCCTAAAATAAGTGTCTTGA 57.651 37.500 0.00 0.00 0.00 3.02
2105 2301 6.395629 TCCGTCCTAAAATAAGTGTCTTGAG 58.604 40.000 0.00 0.00 0.00 3.02
2106 2302 5.063564 CCGTCCTAAAATAAGTGTCTTGAGC 59.936 44.000 0.00 0.00 0.00 4.26
2107 2303 5.869888 CGTCCTAAAATAAGTGTCTTGAGCT 59.130 40.000 0.00 0.00 0.00 4.09
2108 2304 6.369065 CGTCCTAAAATAAGTGTCTTGAGCTT 59.631 38.462 0.00 0.00 0.00 3.74
2109 2305 7.544566 CGTCCTAAAATAAGTGTCTTGAGCTTA 59.455 37.037 0.00 0.00 0.00 3.09
2110 2306 8.874816 GTCCTAAAATAAGTGTCTTGAGCTTAG 58.125 37.037 0.00 0.00 0.00 2.18
2111 2307 8.594550 TCCTAAAATAAGTGTCTTGAGCTTAGT 58.405 33.333 0.00 0.00 0.00 2.24
2112 2308 9.871238 CCTAAAATAAGTGTCTTGAGCTTAGTA 57.129 33.333 0.00 0.00 0.00 1.82
2115 2311 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
2116 2312 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
2117 2313 9.726438 AATAAGTGTCTTGAGCTTAGTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
2118 2314 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
2119 2315 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
2120 2316 7.865707 AGTGTCTTGAGCTTAGTACAAATTTG 58.134 34.615 16.67 16.67 0.00 2.32
2121 2317 7.499232 AGTGTCTTGAGCTTAGTACAAATTTGT 59.501 33.333 25.99 25.99 44.86 2.83
2122 2318 8.770828 GTGTCTTGAGCTTAGTACAAATTTGTA 58.229 33.333 23.91 23.91 42.35 2.41
2146 2342 7.148355 ACTAGAGCTAGTACAAAGTTGAGAC 57.852 40.000 8.35 0.00 43.98 3.36
2147 2343 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
2148 2344 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
2149 2345 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
2150 2346 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
2151 2347 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
2152 2348 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
2153 2349 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
2154 2350 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
2157 2353 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
2158 2354 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
2159 2355 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
2160 2356 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2161 2357 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2162 2358 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2163 2359 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2164 2360 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2165 2361 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2166 2362 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2167 2363 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2168 2364 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2169 2365 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2170 2366 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2264 2460 3.261390 TCATTTGGCCAGAATGAAAAGGG 59.739 43.478 27.08 9.02 39.75 3.95
2442 2638 5.131642 TGTGGAGAAAGAGAGCCATATCAAT 59.868 40.000 0.00 0.00 32.26 2.57
2488 2684 0.548682 AGGGCCTGACCAGATGTCTT 60.549 55.000 4.50 0.00 44.75 3.01
2918 3135 5.071788 ACACTGTCATAGGTGAGGAAAAAGA 59.928 40.000 0.00 0.00 37.22 2.52
3492 3709 1.126488 TCAGCCCTGATGGTGAGATC 58.874 55.000 0.00 0.00 37.80 2.75
3682 3899 4.758674 TGAAGATCTCAAAAGACAGCTTGG 59.241 41.667 0.00 0.00 33.32 3.61
3810 4027 1.006162 AGGCGTAGGAAGAGGAAGTCT 59.994 52.381 0.00 0.00 36.94 3.24
3899 4116 0.829990 TAGATGCCACAGCGAATCCA 59.170 50.000 0.00 0.00 44.31 3.41
3903 4120 2.121291 TGCCACAGCGAATCCATAAA 57.879 45.000 0.00 0.00 44.31 1.40
3951 4168 8.874156 TCTCTGCAATACAATGATAGAAGGTAT 58.126 33.333 0.00 0.00 0.00 2.73
4057 4274 9.507329 CAATGGGAAATAATATAGCTACACAGT 57.493 33.333 0.00 0.00 0.00 3.55
4155 4373 7.463961 TTCTTCAGTGAACCTAGTAGTAAGG 57.536 40.000 0.08 0.00 40.20 2.69
4163 4381 5.959594 TGAACCTAGTAGTAAGGCCATGTTA 59.040 40.000 5.01 0.00 37.67 2.41
4172 4390 4.933400 AGTAAGGCCATGTTACACTTTACG 59.067 41.667 5.01 0.00 33.52 3.18
4684 4913 5.336372 GGTTGCAAGTTATGAAGCCATGTAA 60.336 40.000 0.00 0.00 37.87 2.41
4686 4915 6.135290 TGCAAGTTATGAAGCCATGTAATC 57.865 37.500 0.00 0.00 34.31 1.75
4746 4975 4.399004 AGCTCTTCTGCTATTACCTGTG 57.601 45.455 0.00 0.00 42.10 3.66
4768 4997 1.961394 GGCCGGTCATATCTGTAGTCA 59.039 52.381 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.694696 ACTTCACCCAGGACAAGAGTC 59.305 52.381 0.00 0.00 44.21 3.36
1 2 1.807814 ACTTCACCCAGGACAAGAGT 58.192 50.000 0.00 0.00 0.00 3.24
2 3 2.938956 AACTTCACCCAGGACAAGAG 57.061 50.000 0.00 0.00 0.00 2.85
3 4 2.777692 AGAAACTTCACCCAGGACAAGA 59.222 45.455 0.00 0.00 0.00 3.02
9 10 2.224867 ACCATGAGAAACTTCACCCAGG 60.225 50.000 0.00 0.00 0.00 4.45
19 20 7.066284 ACAAATAGCTACATGACCATGAGAAAC 59.934 37.037 16.07 2.20 41.20 2.78
22 23 6.239217 ACAAATAGCTACATGACCATGAGA 57.761 37.500 16.07 3.68 41.20 3.27
24 25 6.765989 GGTAACAAATAGCTACATGACCATGA 59.234 38.462 16.07 0.61 41.20 3.07
25 26 6.959361 GGTAACAAATAGCTACATGACCATG 58.041 40.000 13.10 8.34 44.15 3.66
68 69 0.032017 ACGAAGAGCCTACCCATCCT 60.032 55.000 0.00 0.00 0.00 3.24
70 71 3.132467 AGTTAACGAAGAGCCTACCCATC 59.868 47.826 0.00 0.00 0.00 3.51
88 89 8.663025 CAAGTACTCACTAATCAGTCGTAGTTA 58.337 37.037 0.00 0.00 33.64 2.24
94 95 6.379386 TCAACAAGTACTCACTAATCAGTCG 58.621 40.000 0.00 0.00 33.48 4.18
95 96 8.651588 CAATCAACAAGTACTCACTAATCAGTC 58.348 37.037 0.00 0.00 33.48 3.51
96 97 8.367911 TCAATCAACAAGTACTCACTAATCAGT 58.632 33.333 0.00 0.00 33.48 3.41
97 98 8.651588 GTCAATCAACAAGTACTCACTAATCAG 58.348 37.037 0.00 0.00 33.48 2.90
107 108 4.345859 TTCCCGTCAATCAACAAGTACT 57.654 40.909 0.00 0.00 0.00 2.73
110 111 3.750371 TGATTCCCGTCAATCAACAAGT 58.250 40.909 4.25 0.00 39.37 3.16
111 112 4.395854 TGATGATTCCCGTCAATCAACAAG 59.604 41.667 11.70 0.00 44.18 3.16
112 113 4.331108 TGATGATTCCCGTCAATCAACAA 58.669 39.130 11.70 0.69 44.18 2.83
123 124 4.960938 TGAAGATTACCTGATGATTCCCG 58.039 43.478 0.00 0.00 0.00 5.14
156 157 1.674441 AGATTTGATAGCGTCGACCGA 59.326 47.619 10.58 0.00 39.56 4.69
157 158 1.781429 CAGATTTGATAGCGTCGACCG 59.219 52.381 10.58 6.51 40.40 4.79
158 159 3.046390 CTCAGATTTGATAGCGTCGACC 58.954 50.000 10.58 2.76 31.68 4.79
159 160 3.953766 TCTCAGATTTGATAGCGTCGAC 58.046 45.455 5.18 5.18 31.68 4.20
161 162 3.728221 CACTCTCAGATTTGATAGCGTCG 59.272 47.826 0.00 0.00 32.36 5.12
164 165 3.715495 AGCACTCTCAGATTTGATAGCG 58.285 45.455 0.00 0.00 32.36 4.26
181 182 3.891049 AGAATTCCCCATGAGTTAGCAC 58.109 45.455 0.65 0.00 0.00 4.40
182 183 4.591321 AAGAATTCCCCATGAGTTAGCA 57.409 40.909 0.65 0.00 0.00 3.49
184 185 9.681062 TTAAGTAAAGAATTCCCCATGAGTTAG 57.319 33.333 0.65 0.00 0.00 2.34
186 187 8.971073 CATTAAGTAAAGAATTCCCCATGAGTT 58.029 33.333 0.65 0.00 0.00 3.01
187 188 7.068716 GCATTAAGTAAAGAATTCCCCATGAGT 59.931 37.037 0.65 0.00 0.00 3.41
188 189 7.068593 TGCATTAAGTAAAGAATTCCCCATGAG 59.931 37.037 0.65 0.00 0.00 2.90
189 190 6.894654 TGCATTAAGTAAAGAATTCCCCATGA 59.105 34.615 0.65 0.00 0.00 3.07
191 192 6.324770 CCTGCATTAAGTAAAGAATTCCCCAT 59.675 38.462 0.65 0.00 0.00 4.00
192 193 5.656416 CCTGCATTAAGTAAAGAATTCCCCA 59.344 40.000 0.65 0.00 0.00 4.96
194 195 7.258441 GTTCCTGCATTAAGTAAAGAATTCCC 58.742 38.462 0.65 0.00 0.00 3.97
195 196 7.093945 TGGTTCCTGCATTAAGTAAAGAATTCC 60.094 37.037 0.65 0.00 0.00 3.01
196 197 7.826690 TGGTTCCTGCATTAAGTAAAGAATTC 58.173 34.615 0.00 0.00 0.00 2.17
198 199 7.615365 TGATGGTTCCTGCATTAAGTAAAGAAT 59.385 33.333 0.00 0.00 0.00 2.40
199 200 6.945435 TGATGGTTCCTGCATTAAGTAAAGAA 59.055 34.615 0.00 0.00 0.00 2.52
200 201 6.480763 TGATGGTTCCTGCATTAAGTAAAGA 58.519 36.000 0.00 0.00 0.00 2.52
201 202 6.757897 TGATGGTTCCTGCATTAAGTAAAG 57.242 37.500 0.00 0.00 0.00 1.85
205 218 5.513233 AGAATGATGGTTCCTGCATTAAGT 58.487 37.500 0.00 0.00 31.65 2.24
231 244 9.171701 CTCGTCGGTTCAACAAAATTAATTTTA 57.828 29.630 22.44 7.62 37.86 1.52
237 250 4.809958 TCACTCGTCGGTTCAACAAAATTA 59.190 37.500 0.00 0.00 0.00 1.40
238 251 3.623960 TCACTCGTCGGTTCAACAAAATT 59.376 39.130 0.00 0.00 0.00 1.82
239 252 3.199677 TCACTCGTCGGTTCAACAAAAT 58.800 40.909 0.00 0.00 0.00 1.82
245 258 3.100658 TGAAATCACTCGTCGGTTCAA 57.899 42.857 0.00 0.00 0.00 2.69
247 260 4.663636 ATTTGAAATCACTCGTCGGTTC 57.336 40.909 0.00 0.00 0.00 3.62
248 261 5.467399 TGTTATTTGAAATCACTCGTCGGTT 59.533 36.000 0.00 0.00 0.00 4.44
250 263 5.524511 TGTTATTTGAAATCACTCGTCGG 57.475 39.130 0.00 0.00 0.00 4.79
251 264 7.287950 TCTTTGTTATTTGAAATCACTCGTCG 58.712 34.615 0.00 0.00 0.00 5.12
267 280 9.743057 TTCACATCGTTGAAAAATCTTTGTTAT 57.257 25.926 0.00 0.00 32.42 1.89
268 281 9.232082 CTTCACATCGTTGAAAAATCTTTGTTA 57.768 29.630 0.00 0.00 35.07 2.41
270 283 7.479980 TCTTCACATCGTTGAAAAATCTTTGT 58.520 30.769 0.00 0.00 35.07 2.83
273 286 9.185192 GAATTCTTCACATCGTTGAAAAATCTT 57.815 29.630 0.00 0.00 35.07 2.40
278 291 7.254137 TGTTGAATTCTTCACATCGTTGAAAA 58.746 30.769 7.05 0.00 39.87 2.29
280 293 6.370433 TGTTGAATTCTTCACATCGTTGAA 57.630 33.333 7.05 0.00 39.87 2.69
285 298 3.438087 AGCCTGTTGAATTCTTCACATCG 59.562 43.478 7.05 2.53 39.87 3.84
287 300 3.057033 GCAGCCTGTTGAATTCTTCACAT 60.057 43.478 7.05 0.00 39.87 3.21
296 309 0.322816 ATCGGTGCAGCCTGTTGAAT 60.323 50.000 10.90 0.00 34.25 2.57
301 314 0.322816 AATCAATCGGTGCAGCCTGT 60.323 50.000 10.90 0.00 34.25 4.00
303 316 1.033746 CCAATCAATCGGTGCAGCCT 61.034 55.000 10.90 0.00 34.25 4.58
304 317 1.434696 CCAATCAATCGGTGCAGCC 59.565 57.895 10.90 2.64 0.00 4.85
305 318 1.226773 GCCAATCAATCGGTGCAGC 60.227 57.895 5.64 5.64 0.00 5.25
306 319 0.742505 ATGCCAATCAATCGGTGCAG 59.257 50.000 0.00 0.00 31.53 4.41
307 320 1.948834 CTATGCCAATCAATCGGTGCA 59.051 47.619 0.00 0.00 0.00 4.57
308 321 1.949525 ACTATGCCAATCAATCGGTGC 59.050 47.619 0.00 0.00 0.00 5.01
309 322 4.816385 AGTTACTATGCCAATCAATCGGTG 59.184 41.667 0.00 0.00 0.00 4.94
310 323 5.036117 AGTTACTATGCCAATCAATCGGT 57.964 39.130 0.00 0.00 0.00 4.69
311 324 5.527214 TGAAGTTACTATGCCAATCAATCGG 59.473 40.000 0.00 0.00 0.00 4.18
312 325 6.603237 TGAAGTTACTATGCCAATCAATCG 57.397 37.500 0.00 0.00 0.00 3.34
321 334 2.999331 TGGGCTTGAAGTTACTATGCC 58.001 47.619 4.12 4.12 38.28 4.40
325 338 6.061022 TGAATGATGGGCTTGAAGTTACTA 57.939 37.500 0.00 0.00 0.00 1.82
338 351 4.404640 AGCTATCCAACATGAATGATGGG 58.595 43.478 16.81 5.26 46.94 4.00
346 363 1.475034 GGCCGAAGCTATCCAACATGA 60.475 52.381 0.00 0.00 39.73 3.07
350 367 1.671328 GAAAGGCCGAAGCTATCCAAC 59.329 52.381 0.00 0.00 39.73 3.77
351 368 1.742411 CGAAAGGCCGAAGCTATCCAA 60.742 52.381 0.00 0.00 39.73 3.53
363 380 1.172812 AACTGGCAAGTCGAAAGGCC 61.173 55.000 13.82 13.82 46.58 5.19
367 384 4.130857 TGTAATGAACTGGCAAGTCGAAA 58.869 39.130 0.00 0.00 34.77 3.46
368 385 3.734463 TGTAATGAACTGGCAAGTCGAA 58.266 40.909 0.00 0.00 34.77 3.71
369 386 3.006430 TCTGTAATGAACTGGCAAGTCGA 59.994 43.478 0.00 0.00 34.77 4.20
385 402 9.733556 TCCAAAGCATTTCTAACTAATCTGTAA 57.266 29.630 0.00 0.00 35.03 2.41
386 403 9.733556 TTCCAAAGCATTTCTAACTAATCTGTA 57.266 29.630 0.00 0.00 35.03 2.74
397 414 9.474313 AGGTACATTAATTCCAAAGCATTTCTA 57.526 29.630 0.00 0.00 35.03 2.10
399 416 8.034804 ACAGGTACATTAATTCCAAAGCATTTC 58.965 33.333 0.00 0.00 35.03 2.17
400 417 7.906327 ACAGGTACATTAATTCCAAAGCATTT 58.094 30.769 0.00 0.00 40.26 2.32
401 418 7.480760 ACAGGTACATTAATTCCAAAGCATT 57.519 32.000 0.00 0.00 0.00 3.56
403 420 6.266558 ACAACAGGTACATTAATTCCAAAGCA 59.733 34.615 0.00 0.00 0.00 3.91
404 421 6.687604 ACAACAGGTACATTAATTCCAAAGC 58.312 36.000 0.00 0.00 0.00 3.51
405 422 9.787532 CATACAACAGGTACATTAATTCCAAAG 57.212 33.333 0.00 0.00 34.07 2.77
406 423 9.521841 TCATACAACAGGTACATTAATTCCAAA 57.478 29.630 0.00 0.00 34.07 3.28
407 424 9.173021 CTCATACAACAGGTACATTAATTCCAA 57.827 33.333 0.00 0.00 34.07 3.53
408 425 8.325787 ACTCATACAACAGGTACATTAATTCCA 58.674 33.333 0.00 0.00 34.07 3.53
409 426 8.612619 CACTCATACAACAGGTACATTAATTCC 58.387 37.037 0.00 0.00 34.07 3.01
410 427 9.162764 ACACTCATACAACAGGTACATTAATTC 57.837 33.333 0.00 0.00 34.07 2.17
411 428 8.946085 CACACTCATACAACAGGTACATTAATT 58.054 33.333 0.00 0.00 34.07 1.40
412 429 7.065803 GCACACTCATACAACAGGTACATTAAT 59.934 37.037 0.00 0.00 34.07 1.40
413 430 6.370442 GCACACTCATACAACAGGTACATTAA 59.630 38.462 0.00 0.00 34.07 1.40
414 431 5.872617 GCACACTCATACAACAGGTACATTA 59.127 40.000 0.00 0.00 34.07 1.90
415 432 4.695455 GCACACTCATACAACAGGTACATT 59.305 41.667 0.00 0.00 34.07 2.71
416 433 4.253685 GCACACTCATACAACAGGTACAT 58.746 43.478 0.00 0.00 34.07 2.29
417 434 3.556213 GGCACACTCATACAACAGGTACA 60.556 47.826 0.00 0.00 34.07 2.90
418 435 3.000727 GGCACACTCATACAACAGGTAC 58.999 50.000 0.00 0.00 34.07 3.34
419 436 2.635427 TGGCACACTCATACAACAGGTA 59.365 45.455 0.00 0.00 36.16 3.08
420 437 1.419762 TGGCACACTCATACAACAGGT 59.580 47.619 0.00 0.00 0.00 4.00
421 438 2.183478 TGGCACACTCATACAACAGG 57.817 50.000 0.00 0.00 0.00 4.00
422 439 3.752747 TGATTGGCACACTCATACAACAG 59.247 43.478 0.00 0.00 43.06 3.16
423 440 3.749226 TGATTGGCACACTCATACAACA 58.251 40.909 0.00 0.00 43.06 3.33
430 447 3.071457 TCTCTTCTTGATTGGCACACTCA 59.929 43.478 0.00 0.00 46.20 3.41
431 448 3.434984 GTCTCTTCTTGATTGGCACACTC 59.565 47.826 0.00 0.00 39.29 3.51
432 449 3.181451 TGTCTCTTCTTGATTGGCACACT 60.181 43.478 0.00 0.00 39.29 3.55
433 450 3.141398 TGTCTCTTCTTGATTGGCACAC 58.859 45.455 0.00 0.00 39.29 3.82
434 451 3.071457 TCTGTCTCTTCTTGATTGGCACA 59.929 43.478 0.00 0.00 0.00 4.57
435 452 3.668447 TCTGTCTCTTCTTGATTGGCAC 58.332 45.455 0.00 0.00 0.00 5.01
436 453 4.259356 CATCTGTCTCTTCTTGATTGGCA 58.741 43.478 0.00 0.00 0.00 4.92
437 454 3.626670 CCATCTGTCTCTTCTTGATTGGC 59.373 47.826 0.00 0.00 0.00 4.52
438 455 3.626670 GCCATCTGTCTCTTCTTGATTGG 59.373 47.826 0.00 0.00 0.00 3.16
439 456 3.626670 GGCCATCTGTCTCTTCTTGATTG 59.373 47.826 0.00 0.00 0.00 2.67
440 457 3.681034 CGGCCATCTGTCTCTTCTTGATT 60.681 47.826 2.24 0.00 0.00 2.57
441 458 2.158986 CGGCCATCTGTCTCTTCTTGAT 60.159 50.000 2.24 0.00 0.00 2.57
442 459 1.205655 CGGCCATCTGTCTCTTCTTGA 59.794 52.381 2.24 0.00 0.00 3.02
443 460 1.649664 CGGCCATCTGTCTCTTCTTG 58.350 55.000 2.24 0.00 0.00 3.02
444 461 0.107945 GCGGCCATCTGTCTCTTCTT 60.108 55.000 2.24 0.00 0.00 2.52
445 462 1.519719 GCGGCCATCTGTCTCTTCT 59.480 57.895 2.24 0.00 0.00 2.85
446 463 1.522580 GGCGGCCATCTGTCTCTTC 60.523 63.158 15.62 0.00 0.00 2.87
447 464 2.293318 TGGCGGCCATCTGTCTCTT 61.293 57.895 19.77 0.00 0.00 2.85
448 465 2.685017 TGGCGGCCATCTGTCTCT 60.685 61.111 19.77 0.00 0.00 3.10
449 466 2.512515 GTGGCGGCCATCTGTCTC 60.513 66.667 26.68 6.37 35.28 3.36
450 467 3.320879 CTGTGGCGGCCATCTGTCT 62.321 63.158 26.68 0.00 35.28 3.41
451 468 2.821366 CTGTGGCGGCCATCTGTC 60.821 66.667 26.68 12.41 35.28 3.51
459 476 3.044059 GATGAAGTGCTGTGGCGGC 62.044 63.158 0.00 0.00 42.25 6.53
461 478 1.642037 CCAGATGAAGTGCTGTGGCG 61.642 60.000 0.00 0.00 42.25 5.69
463 480 0.325933 TCCCAGATGAAGTGCTGTGG 59.674 55.000 0.00 0.00 0.00 4.17
468 485 2.570135 GAATCCTCCCAGATGAAGTGC 58.430 52.381 0.00 0.00 0.00 4.40
477 494 6.857437 AAACATAAAAAGGAATCCTCCCAG 57.143 37.500 0.56 0.00 43.64 4.45
507 524 9.031537 TGGACTATTAAGTGACAAGATCTGTAA 57.968 33.333 0.00 0.00 35.36 2.41
508 525 8.589701 TGGACTATTAAGTGACAAGATCTGTA 57.410 34.615 0.00 0.00 35.36 2.74
509 526 7.397476 TCTGGACTATTAAGTGACAAGATCTGT 59.603 37.037 0.00 0.00 37.18 3.41
510 527 7.776107 TCTGGACTATTAAGTGACAAGATCTG 58.224 38.462 0.00 0.00 35.56 2.90
511 528 7.962995 TCTGGACTATTAAGTGACAAGATCT 57.037 36.000 0.00 0.00 35.56 2.75
512 529 8.417106 TGATCTGGACTATTAAGTGACAAGATC 58.583 37.037 14.43 14.43 35.56 2.75
513 530 8.311395 TGATCTGGACTATTAAGTGACAAGAT 57.689 34.615 0.00 0.00 35.56 2.40
514 531 7.397476 ACTGATCTGGACTATTAAGTGACAAGA 59.603 37.037 4.49 0.00 35.56 3.02
515 532 7.551585 ACTGATCTGGACTATTAAGTGACAAG 58.448 38.462 4.49 0.00 35.56 3.16
516 533 7.482169 ACTGATCTGGACTATTAAGTGACAA 57.518 36.000 4.49 0.00 35.56 3.18
517 534 7.482169 AACTGATCTGGACTATTAAGTGACA 57.518 36.000 4.49 0.00 35.56 3.58
518 535 7.819900 ACAAACTGATCTGGACTATTAAGTGAC 59.180 37.037 4.49 0.00 35.56 3.67
519 536 7.907389 ACAAACTGATCTGGACTATTAAGTGA 58.093 34.615 4.49 0.00 35.56 3.41
520 537 9.307121 CTACAAACTGATCTGGACTATTAAGTG 57.693 37.037 4.49 0.00 35.56 3.16
521 538 9.256228 TCTACAAACTGATCTGGACTATTAAGT 57.744 33.333 4.49 0.00 39.21 2.24
522 539 9.743057 CTCTACAAACTGATCTGGACTATTAAG 57.257 37.037 4.49 0.00 0.00 1.85
547 606 3.323115 TCTGAAGTGTTCATGAGCAGACT 59.677 43.478 13.02 4.70 39.30 3.24
548 607 3.657634 TCTGAAGTGTTCATGAGCAGAC 58.342 45.455 13.02 7.85 39.30 3.51
549 608 3.575687 TCTCTGAAGTGTTCATGAGCAGA 59.424 43.478 13.02 10.37 39.30 4.26
550 609 3.922910 TCTCTGAAGTGTTCATGAGCAG 58.077 45.455 13.02 6.91 39.30 4.24
558 617 8.451748 AGTAACAACTTTTTCTCTGAAGTGTTC 58.548 33.333 0.00 0.00 36.31 3.18
566 625 8.830580 TCATGAGAAGTAACAACTTTTTCTCTG 58.169 33.333 12.17 8.77 42.51 3.35
567 626 8.964476 TCATGAGAAGTAACAACTTTTTCTCT 57.036 30.769 12.17 0.00 42.51 3.10
568 627 9.657121 CTTCATGAGAAGTAACAACTTTTTCTC 57.343 33.333 0.00 5.77 44.97 2.87
586 645 6.471841 CGACTCACTACAAGAATCTTCATGAG 59.528 42.308 15.24 15.24 37.62 2.90
588 647 6.325596 TCGACTCACTACAAGAATCTTCATG 58.674 40.000 0.00 0.00 32.55 3.07
604 705 6.910536 ATTTATGACCAGAAATCGACTCAC 57.089 37.500 0.00 0.00 26.95 3.51
605 706 8.258007 AGTAATTTATGACCAGAAATCGACTCA 58.742 33.333 3.48 0.00 31.75 3.41
620 721 9.527157 TGACCAGGAAAATCAAGTAATTTATGA 57.473 29.630 0.00 0.00 0.00 2.15
624 725 8.923270 TCTTTGACCAGGAAAATCAAGTAATTT 58.077 29.630 0.00 0.00 34.04 1.82
667 769 7.806014 GCGAAACTAACCATAATGACAAAAGAA 59.194 33.333 0.00 0.00 0.00 2.52
735 837 7.232300 GGTGTTTACGCTGAGTTTTATACTTC 58.768 38.462 0.00 0.00 37.17 3.01
747 849 1.492319 GCACACGGTGTTTACGCTGA 61.492 55.000 11.82 0.00 35.75 4.26
751 853 2.547305 CGGCACACGGTGTTTACG 59.453 61.111 11.82 12.23 39.42 3.18
761 863 1.289109 AAGTCATACGCACGGCACAC 61.289 55.000 0.00 0.00 0.00 3.82
762 864 1.005512 AAGTCATACGCACGGCACA 60.006 52.632 0.00 0.00 0.00 4.57
769 871 5.072040 TCTTTGATCAGAAGTCATACGCA 57.928 39.130 13.69 0.00 0.00 5.24
771 873 9.689976 AAGATATCTTTGATCAGAAGTCATACG 57.310 33.333 12.37 0.00 30.82 3.06
816 947 5.647658 AGCAGTAACTATGTTGCTTGCATTA 59.352 36.000 17.09 0.00 43.91 1.90
953 1090 1.067060 GCCTTCTTTTCGGTTGCTTGT 59.933 47.619 0.00 0.00 0.00 3.16
1013 1150 2.187707 CCATTGCTCTGTTTATTGCGC 58.812 47.619 0.00 0.00 0.00 6.09
1086 1223 5.833667 TCTGTACTTACTACCTCCATCCATG 59.166 44.000 0.00 0.00 0.00 3.66
1293 1430 3.770388 TGACAAACCGTATCCATACCTCA 59.230 43.478 0.00 0.00 0.00 3.86
1312 1449 4.927425 AGCAAAACAATTCTGATGCATGAC 59.073 37.500 2.46 0.00 34.70 3.06
1326 1470 4.199310 AGCACAGAGAAGTAGCAAAACAA 58.801 39.130 0.00 0.00 0.00 2.83
1329 1473 3.003689 GCAAGCACAGAGAAGTAGCAAAA 59.996 43.478 0.00 0.00 0.00 2.44
1464 1609 7.072177 ACATTTATGTGACGTTATTCAGTGG 57.928 36.000 0.00 0.00 40.03 4.00
1473 1618 4.216411 AGGGCTACATTTATGTGACGTT 57.784 40.909 5.64 0.00 41.89 3.99
1593 1759 6.732531 TGATTGCTCATGTAAGACTCTTTG 57.267 37.500 0.00 0.00 0.00 2.77
1663 1829 9.575868 TTTTGGTACTTGTAATCTTTGACCATA 57.424 29.630 0.00 0.00 35.73 2.74
1671 1837 9.239551 GGGATTACTTTTGGTACTTGTAATCTT 57.760 33.333 21.13 4.35 43.96 2.40
1717 1883 2.280552 AAGCCACATGCCAAGCCTG 61.281 57.895 0.00 0.00 42.71 4.85
1744 1910 6.442513 ACTTCTTTAATTGGTGCTATGAGC 57.557 37.500 0.00 0.00 42.82 4.26
1793 1960 9.220767 GTTGGACTATAGATCTTTTGTGAGTTT 57.779 33.333 6.78 0.00 0.00 2.66
1794 1961 8.375506 TGTTGGACTATAGATCTTTTGTGAGTT 58.624 33.333 6.78 0.00 0.00 3.01
1887 2054 4.201822 GCCCAAGATTTCTGTGTTCGTATC 60.202 45.833 0.00 0.00 0.00 2.24
2000 2169 6.483307 TGGTAGTGCTACAAGAATATCATTGC 59.517 38.462 10.98 0.00 37.78 3.56
2076 2272 4.161754 ACACTTATTTTAGGACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
2077 2273 4.098894 ACACTTATTTTAGGACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2078 2274 4.161754 AGACACTTATTTTAGGACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2079 2275 5.340439 AGACACTTATTTTAGGACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2080 2276 6.395629 TCAAGACACTTATTTTAGGACGGAG 58.604 40.000 0.00 0.00 0.00 4.63
2081 2277 6.349243 TCAAGACACTTATTTTAGGACGGA 57.651 37.500 0.00 0.00 0.00 4.69
2082 2278 5.063564 GCTCAAGACACTTATTTTAGGACGG 59.936 44.000 0.00 0.00 0.00 4.79
2083 2279 5.869888 AGCTCAAGACACTTATTTTAGGACG 59.130 40.000 0.00 0.00 0.00 4.79
2084 2280 7.674471 AAGCTCAAGACACTTATTTTAGGAC 57.326 36.000 0.00 0.00 0.00 3.85
2085 2281 8.594550 ACTAAGCTCAAGACACTTATTTTAGGA 58.405 33.333 3.19 0.00 0.00 2.94
2086 2282 8.779354 ACTAAGCTCAAGACACTTATTTTAGG 57.221 34.615 3.19 0.00 0.00 2.69
2089 2285 9.555727 TTGTACTAAGCTCAAGACACTTATTTT 57.444 29.630 3.19 0.00 0.00 1.82
2090 2286 9.555727 TTTGTACTAAGCTCAAGACACTTATTT 57.444 29.630 3.19 0.00 0.00 1.40
2091 2287 9.726438 ATTTGTACTAAGCTCAAGACACTTATT 57.274 29.630 3.19 0.00 0.00 1.40
2092 2288 9.726438 AATTTGTACTAAGCTCAAGACACTTAT 57.274 29.630 3.19 0.00 0.00 1.73
2093 2289 9.555727 AAATTTGTACTAAGCTCAAGACACTTA 57.444 29.630 3.19 0.00 0.00 2.24
2094 2290 8.345565 CAAATTTGTACTAAGCTCAAGACACTT 58.654 33.333 10.15 0.00 0.00 3.16
2095 2291 7.499232 ACAAATTTGTACTAAGCTCAAGACACT 59.501 33.333 22.10 0.00 40.16 3.55
2096 2292 7.639945 ACAAATTTGTACTAAGCTCAAGACAC 58.360 34.615 22.10 2.09 40.16 3.67
2097 2293 7.801716 ACAAATTTGTACTAAGCTCAAGACA 57.198 32.000 22.10 0.00 40.16 3.41
2121 2317 7.881751 TGTCTCAACTTTGTACTAGCTCTAGTA 59.118 37.037 11.59 11.59 43.98 1.82
2123 2319 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
2124 2320 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
2125 2321 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
2126 2322 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
2127 2323 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
2128 2324 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
2131 2327 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2132 2328 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2133 2329 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2134 2330 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2135 2331 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2136 2332 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2137 2333 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2138 2334 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2139 2335 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2140 2336 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2141 2337 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2142 2338 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2143 2339 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2144 2340 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2145 2341 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2146 2342 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2147 2343 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2148 2344 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2149 2345 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2150 2346 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2151 2347 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2152 2348 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2153 2349 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
2154 2350 3.339713 AATATACTCCCTCCGTCCCAA 57.660 47.619 0.00 0.00 0.00 4.12
2155 2351 3.339713 AAATATACTCCCTCCGTCCCA 57.660 47.619 0.00 0.00 0.00 4.37
2156 2352 6.370186 AATAAAATATACTCCCTCCGTCCC 57.630 41.667 0.00 0.00 0.00 4.46
2157 2353 6.653740 CCAAATAAAATATACTCCCTCCGTCC 59.346 42.308 0.00 0.00 0.00 4.79
2158 2354 7.222161 ACCAAATAAAATATACTCCCTCCGTC 58.778 38.462 0.00 0.00 0.00 4.79
2159 2355 7.145474 ACCAAATAAAATATACTCCCTCCGT 57.855 36.000 0.00 0.00 0.00 4.69
2160 2356 8.349983 CAAACCAAATAAAATATACTCCCTCCG 58.650 37.037 0.00 0.00 0.00 4.63
2161 2357 9.197306 ACAAACCAAATAAAATATACTCCCTCC 57.803 33.333 0.00 0.00 0.00 4.30
2442 2638 5.942236 AGCAGCTACAATCTCTTTCATTTGA 59.058 36.000 0.00 0.00 0.00 2.69
2488 2684 8.458573 TTTTGTTGCAGGAGTTCTTTTATAGA 57.541 30.769 0.00 0.00 0.00 1.98
2581 2777 2.225019 CCACAGTGTCAGAAGTTGCATC 59.775 50.000 0.00 0.00 0.00 3.91
2882 3099 4.955811 ATGACAGTGTCAGGAGTTACAA 57.044 40.909 28.54 3.71 46.04 2.41
2918 3135 2.375146 GTGTGGAACCACTGGAGTTTT 58.625 47.619 21.98 0.00 46.30 2.43
3492 3709 7.488187 TTCTTGACTGTCTTTTGAGATCTTG 57.512 36.000 9.51 0.00 0.00 3.02
3682 3899 1.831580 ATCTCTTGGTTGGCTTCAGC 58.168 50.000 0.00 0.00 41.14 4.26
3903 4120 9.579932 AGAGATTCTTTAAATCCAAACAGTTCT 57.420 29.630 0.00 0.00 0.00 3.01
3919 4136 9.842775 TCTATCATTGTATTGCAGAGATTCTTT 57.157 29.630 0.00 0.00 0.00 2.52
3943 4160 8.650143 TGCAAATTTTCCTTTCTATACCTTCT 57.350 30.769 0.00 0.00 0.00 2.85
4073 4290 2.430465 CTGCCATCAGCTACAAACTGT 58.570 47.619 0.00 0.00 44.23 3.55
4125 4343 8.254508 ACTACTAGGTTCACTGAAGAATCAATC 58.745 37.037 0.00 0.00 34.49 2.67
4137 4355 4.057063 TGGCCTTACTACTAGGTTCACT 57.943 45.455 3.32 0.00 35.13 3.41
4155 4373 3.124636 CAGGACGTAAAGTGTAACATGGC 59.875 47.826 0.00 0.00 41.43 4.40
4163 4381 3.192466 GTGTTCACAGGACGTAAAGTGT 58.808 45.455 11.83 0.77 33.84 3.55
4172 4390 1.941668 GCAGCTAGGTGTTCACAGGAC 60.942 57.143 22.21 0.00 0.00 3.85
4286 4510 3.756933 ATGCTTGGCAAACATGTCTTT 57.243 38.095 14.88 0.00 43.62 2.52
4684 4913 3.193263 CTGCTACTTGAACAGCATCGAT 58.807 45.455 0.00 0.00 46.15 3.59
4746 4975 1.687123 ACTACAGATATGACCGGCCAC 59.313 52.381 0.00 0.00 0.00 5.01
4768 4997 6.542370 GGCATGTGTAGTTGATAAGGTACATT 59.458 38.462 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.