Multiple sequence alignment - TraesCS2B01G558100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G558100 chr2B 100.000 5934 0 0 1 5934 752479148 752485081 0.000000e+00 10959
1 TraesCS2B01G558100 chr2B 87.549 3084 316 35 1594 4666 752411831 752414857 0.000000e+00 3506
2 TraesCS2B01G558100 chr2B 88.832 591 37 17 977 1552 752410931 752411507 0.000000e+00 699
3 TraesCS2B01G558100 chr2B 80.707 368 53 9 4953 5311 752415385 752415743 2.730000e-68 270
4 TraesCS2B01G558100 chr2B 84.507 213 21 7 1 204 752408657 752408866 3.630000e-47 200
5 TraesCS2B01G558100 chr2B 95.556 90 4 0 537 626 139229968 139230057 1.720000e-30 145
6 TraesCS2B01G558100 chr2D 87.432 4201 416 63 978 5133 616942566 616946699 0.000000e+00 4730
7 TraesCS2B01G558100 chr2D 89.669 242 24 1 5677 5918 616946888 616947128 2.080000e-79 307
8 TraesCS2B01G558100 chr2D 84.483 116 13 4 5341 5451 616946760 616946875 6.290000e-20 110
9 TraesCS2B01G558100 chr2A 87.313 4209 432 48 975 5166 746939209 746943332 0.000000e+00 4721
10 TraesCS2B01G558100 chr2A 89.334 2972 272 27 927 3859 746956216 746959181 0.000000e+00 3690
11 TraesCS2B01G558100 chr2A 84.735 963 128 15 3874 4827 746959563 746960515 0.000000e+00 946
12 TraesCS2B01G558100 chr2A 90.647 278 25 1 5657 5934 746961087 746961363 9.400000e-98 368
13 TraesCS2B01G558100 chr2A 90.909 220 16 2 625 843 746954703 746954919 5.820000e-75 292
14 TraesCS2B01G558100 chr2A 81.616 359 58 3 4956 5309 746944707 746945062 2.090000e-74 291
15 TraesCS2B01G558100 chr2A 84.775 289 31 6 5314 5602 746960407 746960682 1.630000e-70 278
16 TraesCS2B01G558100 chr2A 88.053 226 24 3 5329 5552 746943372 746943596 1.270000e-66 265
17 TraesCS2B01G558100 chr2A 82.445 319 41 11 5623 5934 746943586 746943896 1.270000e-66 265
18 TraesCS2B01G558100 chr2A 87.611 226 18 7 29 248 746954364 746954585 2.740000e-63 254
19 TraesCS2B01G558100 chr2A 88.596 114 12 1 391 504 746938898 746939010 2.880000e-28 137
20 TraesCS2B01G558100 chr2A 100.000 60 0 0 486 545 746954647 746954706 1.750000e-20 111
21 TraesCS2B01G558100 chr6D 77.156 2609 515 55 1380 3952 468872218 468874781 0.000000e+00 1441
22 TraesCS2B01G558100 chr6D 78.668 2222 421 36 1757 3952 468255403 468253209 0.000000e+00 1428
23 TraesCS2B01G558100 chr6D 76.097 2393 478 57 1803 4148 468941591 468943936 0.000000e+00 1164
24 TraesCS2B01G558100 chr6D 76.941 1687 341 35 1758 3415 468849622 468851289 0.000000e+00 917
25 TraesCS2B01G558100 chr6D 74.359 780 164 16 1432 2190 469075842 469076606 3.480000e-77 300
26 TraesCS2B01G558100 chr6D 74.925 335 75 7 3083 3415 468860465 468860792 1.720000e-30 145
27 TraesCS2B01G558100 chr6D 91.765 85 7 0 542 626 368363581 368363665 1.040000e-22 119
28 TraesCS2B01G558100 chr6D 74.386 285 57 15 1007 1283 468255972 468255696 2.260000e-19 108
29 TraesCS2B01G558100 chr6B 76.099 2820 572 68 1380 4148 715154508 715157276 0.000000e+00 1380
30 TraesCS2B01G558100 chr6B 76.920 2344 449 57 1616 3901 715222198 715224507 0.000000e+00 1247
31 TraesCS2B01G558100 chr6B 86.667 150 13 3 245 389 16778284 16778137 6.160000e-35 159
32 TraesCS2B01G558100 chr6B 87.143 140 13 3 253 387 499568711 499568572 2.860000e-33 154
33 TraesCS2B01G558100 chr6B 86.765 136 13 1 257 387 372775873 372775738 4.790000e-31 147
34 TraesCS2B01G558100 chr6B 93.478 92 5 1 541 632 284570880 284570970 1.040000e-27 135
35 TraesCS2B01G558100 chrUn 83.401 247 19 7 2 248 9577089 9577313 6.030000e-50 209
36 TraesCS2B01G558100 chrUn 91.613 155 7 2 391 544 9577315 9577464 6.030000e-50 209
37 TraesCS2B01G558100 chrUn 91.057 123 7 2 623 745 9577465 9577583 4.760000e-36 163
38 TraesCS2B01G558100 chrUn 76.056 284 58 10 1005 1283 75218285 75218563 8.020000e-29 139
39 TraesCS2B01G558100 chrUn 92.135 89 7 0 1094 1182 9577590 9577678 6.240000e-25 126
40 TraesCS2B01G558100 chr7D 90.411 146 9 2 251 391 365316516 365316661 2.820000e-43 187
41 TraesCS2B01G558100 chr7B 89.542 153 9 4 244 389 553132277 553132429 2.820000e-43 187
42 TraesCS2B01G558100 chr6A 89.474 152 10 2 250 395 15501121 15501272 2.820000e-43 187
43 TraesCS2B01G558100 chr6A 94.118 85 5 0 542 626 572987158 572987242 4.830000e-26 130
44 TraesCS2B01G558100 chr6A 89.362 94 8 2 538 631 250609436 250609527 3.760000e-22 117
45 TraesCS2B01G558100 chr3A 86.842 152 14 3 250 395 545898602 545898451 1.320000e-36 165
46 TraesCS2B01G558100 chr3D 87.943 141 12 2 252 387 586886327 586886467 1.710000e-35 161
47 TraesCS2B01G558100 chr5D 92.473 93 6 1 542 633 47529311 47529403 1.340000e-26 132
48 TraesCS2B01G558100 chr5D 92.473 93 6 1 534 626 89898800 89898891 1.340000e-26 132
49 TraesCS2B01G558100 chr4D 94.118 85 5 0 542 626 317189953 317189869 4.830000e-26 130
50 TraesCS2B01G558100 chr4D 89.773 88 9 0 541 628 461576831 461576744 4.860000e-21 113
51 TraesCS2B01G558100 chr5A 82.192 146 20 3 247 387 574332976 574333120 2.900000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G558100 chr2B 752479148 752485081 5933 False 10959.000000 10959 100.000000 1 5934 1 chr2B.!!$F2 5933
1 TraesCS2B01G558100 chr2B 752408657 752415743 7086 False 1168.750000 3506 85.398750 1 5311 4 chr2B.!!$F3 5310
2 TraesCS2B01G558100 chr2D 616942566 616947128 4562 False 1715.666667 4730 87.194667 978 5918 3 chr2D.!!$F1 4940
3 TraesCS2B01G558100 chr2A 746938898 746945062 6164 False 1135.800000 4721 85.604600 391 5934 5 chr2A.!!$F1 5543
4 TraesCS2B01G558100 chr2A 746954364 746961363 6999 False 848.428571 3690 89.715857 29 5934 7 chr2A.!!$F2 5905
5 TraesCS2B01G558100 chr6D 468872218 468874781 2563 False 1441.000000 1441 77.156000 1380 3952 1 chr6D.!!$F4 2572
6 TraesCS2B01G558100 chr6D 468941591 468943936 2345 False 1164.000000 1164 76.097000 1803 4148 1 chr6D.!!$F5 2345
7 TraesCS2B01G558100 chr6D 468849622 468851289 1667 False 917.000000 917 76.941000 1758 3415 1 chr6D.!!$F2 1657
8 TraesCS2B01G558100 chr6D 468253209 468255972 2763 True 768.000000 1428 76.527000 1007 3952 2 chr6D.!!$R1 2945
9 TraesCS2B01G558100 chr6D 469075842 469076606 764 False 300.000000 300 74.359000 1432 2190 1 chr6D.!!$F6 758
10 TraesCS2B01G558100 chr6B 715154508 715157276 2768 False 1380.000000 1380 76.099000 1380 4148 1 chr6B.!!$F2 2768
11 TraesCS2B01G558100 chr6B 715222198 715224507 2309 False 1247.000000 1247 76.920000 1616 3901 1 chr6B.!!$F3 2285

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
923 3943 0.036306 CTTCTACCACCACCACCACC 59.964 60.0 0.00 0.0 0.00 4.61 F
1101 4137 0.103208 CCTACATGGACAGCTCCGAC 59.897 60.0 0.00 0.0 39.88 4.79 F
1545 4827 0.908198 GATCCTCCTCCTGCAGTTGT 59.092 55.0 13.81 0.0 0.00 3.32 F
2259 5634 0.981183 ACCCGTTTGCCATCTGTAGA 59.019 50.0 0.00 0.0 0.00 2.59 F
3421 6842 2.026822 GGAATTGACAGAGCTTGGAGGA 60.027 50.0 0.00 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2167 5542 0.168128 GGTTTTCCCAATCACGCTCG 59.832 55.000 0.00 0.00 0.00 5.03 R
2863 6269 1.210155 GTGCCGAACAGATTGTGGC 59.790 57.895 4.19 4.19 45.91 5.01 R
3381 6799 1.302285 CCCAGCTGGCTCAGTTCAT 59.698 57.895 28.39 0.00 33.43 2.57 R
3690 7117 1.142688 AGGTGGAAGAGTGCCCCAAT 61.143 55.000 0.00 0.00 0.00 3.16 R
4942 9025 0.033781 TGGTTGAGCTTGCAATTGGC 59.966 50.000 7.72 0.00 45.13 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 5.940470 GTCACTCAATAGTTGGGATCAGTTT 59.060 40.000 0.00 0.00 34.45 2.66
70 71 6.777580 ACTCAATAGTTGGGATCAGTTTTGTT 59.222 34.615 0.00 0.00 34.45 2.83
78 79 2.487762 GGATCAGTTTTGTTCGCCATCA 59.512 45.455 0.00 0.00 0.00 3.07
79 80 3.426695 GGATCAGTTTTGTTCGCCATCAG 60.427 47.826 0.00 0.00 0.00 2.90
86 89 0.320683 TGTTCGCCATCAGTCTGGTG 60.321 55.000 6.09 6.09 46.17 4.17
142 151 1.076332 AAGTAGCAAACGCGTCATCC 58.924 50.000 14.44 1.09 0.00 3.51
204 215 0.315059 CACGTGTCGTTCTTGCACAC 60.315 55.000 7.58 0.00 38.32 3.82
205 216 0.738063 ACGTGTCGTTCTTGCACACA 60.738 50.000 0.00 0.00 40.46 3.72
206 217 0.043053 CGTGTCGTTCTTGCACACAG 60.043 55.000 0.00 0.00 40.46 3.66
207 218 1.006832 GTGTCGTTCTTGCACACAGT 58.993 50.000 0.00 0.00 40.22 3.55
209 220 1.286501 GTCGTTCTTGCACACAGTCA 58.713 50.000 0.00 0.00 0.00 3.41
210 221 1.258982 GTCGTTCTTGCACACAGTCAG 59.741 52.381 0.00 0.00 0.00 3.51
214 229 2.174363 TCTTGCACACAGTCAGGATG 57.826 50.000 0.00 0.00 37.54 3.51
222 237 2.179427 CACAGTCAGGATGGAGGTGTA 58.821 52.381 0.00 0.00 36.16 2.90
232 247 3.458189 GATGGAGGTGTACATTTCCTCG 58.542 50.000 21.97 0.00 45.99 4.63
234 249 1.066430 GGAGGTGTACATTTCCTCGCA 60.066 52.381 19.44 0.00 45.99 5.10
255 270 2.656947 TGGGTGCCATTTATAGAGCC 57.343 50.000 0.00 0.00 0.00 4.70
256 271 2.135189 TGGGTGCCATTTATAGAGCCT 58.865 47.619 0.00 0.00 0.00 4.58
257 272 2.158623 TGGGTGCCATTTATAGAGCCTG 60.159 50.000 0.00 0.00 0.00 4.85
258 273 2.158608 GGGTGCCATTTATAGAGCCTGT 60.159 50.000 0.00 0.00 0.00 4.00
260 275 3.565902 GGTGCCATTTATAGAGCCTGTTC 59.434 47.826 0.00 0.00 0.00 3.18
262 277 3.133901 TGCCATTTATAGAGCCTGTTCGA 59.866 43.478 0.00 0.00 0.00 3.71
263 278 4.127171 GCCATTTATAGAGCCTGTTCGAA 58.873 43.478 0.00 0.00 0.00 3.71
264 279 4.024809 GCCATTTATAGAGCCTGTTCGAAC 60.025 45.833 21.42 21.42 0.00 3.95
265 280 5.360591 CCATTTATAGAGCCTGTTCGAACT 58.639 41.667 27.32 8.68 0.00 3.01
266 281 5.463724 CCATTTATAGAGCCTGTTCGAACTC 59.536 44.000 27.32 16.89 0.00 3.01
267 282 4.650754 TTATAGAGCCTGTTCGAACTCC 57.349 45.455 27.32 15.59 0.00 3.85
270 285 0.108567 GAGCCTGTTCGAACTCCCTC 60.109 60.000 27.32 22.52 0.00 4.30
272 287 1.215647 CCTGTTCGAACTCCCTCCG 59.784 63.158 27.32 8.24 0.00 4.63
273 288 1.215647 CTGTTCGAACTCCCTCCGG 59.784 63.158 27.32 0.00 0.00 5.14
274 289 2.125633 GTTCGAACTCCCTCCGGC 60.126 66.667 20.97 0.00 0.00 6.13
275 290 2.283676 TTCGAACTCCCTCCGGCT 60.284 61.111 0.00 0.00 0.00 5.52
276 291 2.348888 TTCGAACTCCCTCCGGCTC 61.349 63.158 0.00 0.00 0.00 4.70
277 292 3.839432 CGAACTCCCTCCGGCTCC 61.839 72.222 0.00 0.00 0.00 4.70
278 293 3.839432 GAACTCCCTCCGGCTCCG 61.839 72.222 0.00 0.48 39.44 4.63
284 299 4.821589 CCTCCGGCTCCGCAACTC 62.822 72.222 0.00 0.00 38.24 3.01
285 300 4.821589 CTCCGGCTCCGCAACTCC 62.822 72.222 0.00 0.00 38.24 3.85
287 302 4.473520 CCGGCTCCGCAACTCCAT 62.474 66.667 2.18 0.00 38.24 3.41
288 303 2.436646 CGGCTCCGCAACTCCATT 60.437 61.111 0.00 0.00 0.00 3.16
289 304 2.464459 CGGCTCCGCAACTCCATTC 61.464 63.158 0.00 0.00 0.00 2.67
290 305 2.115291 GGCTCCGCAACTCCATTCC 61.115 63.158 0.00 0.00 0.00 3.01
291 306 2.464459 GCTCCGCAACTCCATTCCG 61.464 63.158 0.00 0.00 0.00 4.30
292 307 1.815421 CTCCGCAACTCCATTCCGG 60.815 63.158 0.00 0.00 40.25 5.14
293 308 2.238847 CTCCGCAACTCCATTCCGGA 62.239 60.000 0.00 0.00 44.85 5.14
300 315 2.586245 TCCATTCCGGAGCAGCAG 59.414 61.111 3.34 0.00 39.64 4.24
301 316 3.207669 CCATTCCGGAGCAGCAGC 61.208 66.667 3.34 0.00 42.56 5.25
302 317 3.207669 CATTCCGGAGCAGCAGCC 61.208 66.667 3.34 0.00 43.56 4.85
303 318 3.720601 ATTCCGGAGCAGCAGCCA 61.721 61.111 3.34 0.00 43.56 4.75
304 319 3.694058 ATTCCGGAGCAGCAGCCAG 62.694 63.158 3.34 0.00 43.56 4.85
306 321 4.711949 CCGGAGCAGCAGCCAGTT 62.712 66.667 0.00 0.00 43.56 3.16
307 322 3.429141 CGGAGCAGCAGCCAGTTG 61.429 66.667 0.00 0.00 43.56 3.16
308 323 2.282040 GGAGCAGCAGCCAGTTGT 60.282 61.111 0.00 0.00 43.56 3.32
309 324 1.003355 GGAGCAGCAGCCAGTTGTA 60.003 57.895 0.00 0.00 43.56 2.41
310 325 0.606401 GGAGCAGCAGCCAGTTGTAA 60.606 55.000 0.00 0.00 43.56 2.41
311 326 1.457346 GAGCAGCAGCCAGTTGTAAT 58.543 50.000 0.00 0.00 43.56 1.89
312 327 1.815003 GAGCAGCAGCCAGTTGTAATT 59.185 47.619 0.00 0.00 43.56 1.40
313 328 2.229784 GAGCAGCAGCCAGTTGTAATTT 59.770 45.455 0.00 0.00 43.56 1.82
314 329 3.420893 AGCAGCAGCCAGTTGTAATTTA 58.579 40.909 0.00 0.00 43.56 1.40
315 330 4.019174 AGCAGCAGCCAGTTGTAATTTAT 58.981 39.130 0.00 0.00 43.56 1.40
316 331 4.107622 GCAGCAGCCAGTTGTAATTTATG 58.892 43.478 0.00 0.00 33.58 1.90
317 332 4.675510 CAGCAGCCAGTTGTAATTTATGG 58.324 43.478 0.00 0.00 0.00 2.74
318 333 4.398988 CAGCAGCCAGTTGTAATTTATGGA 59.601 41.667 0.00 0.00 32.55 3.41
319 334 4.641989 AGCAGCCAGTTGTAATTTATGGAG 59.358 41.667 0.00 0.00 32.55 3.86
320 335 4.734695 GCAGCCAGTTGTAATTTATGGAGC 60.735 45.833 0.00 0.00 32.55 4.70
321 336 3.627577 AGCCAGTTGTAATTTATGGAGCG 59.372 43.478 0.00 0.00 32.55 5.03
322 337 3.243068 GCCAGTTGTAATTTATGGAGCGG 60.243 47.826 0.00 0.00 32.55 5.52
323 338 3.243068 CCAGTTGTAATTTATGGAGCGGC 60.243 47.826 0.00 0.00 32.55 6.53
324 339 3.627577 CAGTTGTAATTTATGGAGCGGCT 59.372 43.478 0.00 0.00 0.00 5.52
325 340 4.814234 CAGTTGTAATTTATGGAGCGGCTA 59.186 41.667 0.60 0.00 0.00 3.93
326 341 5.295787 CAGTTGTAATTTATGGAGCGGCTAA 59.704 40.000 0.60 0.00 0.00 3.09
327 342 6.017109 CAGTTGTAATTTATGGAGCGGCTAAT 60.017 38.462 0.60 2.42 0.00 1.73
328 343 7.172532 CAGTTGTAATTTATGGAGCGGCTAATA 59.827 37.037 0.60 1.33 0.00 0.98
329 344 7.172703 AGTTGTAATTTATGGAGCGGCTAATAC 59.827 37.037 0.60 0.00 0.00 1.89
330 345 5.636121 TGTAATTTATGGAGCGGCTAATACG 59.364 40.000 0.60 0.00 0.00 3.06
331 346 4.530710 ATTTATGGAGCGGCTAATACGA 57.469 40.909 0.60 0.00 0.00 3.43
332 347 4.530710 TTTATGGAGCGGCTAATACGAT 57.469 40.909 0.60 0.00 0.00 3.73
333 348 2.370281 ATGGAGCGGCTAATACGATG 57.630 50.000 0.60 0.00 0.00 3.84
334 349 0.319555 TGGAGCGGCTAATACGATGC 60.320 55.000 0.60 0.00 38.55 3.91
335 350 0.038159 GGAGCGGCTAATACGATGCT 60.038 55.000 0.60 0.00 35.23 3.79
336 351 1.341606 GAGCGGCTAATACGATGCTC 58.658 55.000 0.60 0.00 41.57 4.26
337 352 0.038159 AGCGGCTAATACGATGCTCC 60.038 55.000 0.00 0.00 0.00 4.70
338 353 1.344942 GCGGCTAATACGATGCTCCG 61.345 60.000 0.00 0.00 38.51 4.63
339 354 1.344942 CGGCTAATACGATGCTCCGC 61.345 60.000 0.00 0.00 0.00 5.54
340 355 1.014564 GGCTAATACGATGCTCCGCC 61.015 60.000 0.00 0.00 0.00 6.13
341 356 1.014564 GCTAATACGATGCTCCGCCC 61.015 60.000 0.00 0.00 0.00 6.13
342 357 0.732880 CTAATACGATGCTCCGCCCG 60.733 60.000 0.00 0.00 0.00 6.13
343 358 2.758770 TAATACGATGCTCCGCCCGC 62.759 60.000 0.00 0.00 0.00 6.13
360 375 4.180946 CTCCGCTCCGTGACCGAG 62.181 72.222 0.00 0.00 35.63 4.63
363 378 3.518998 CGCTCCGTGACCGAGGAT 61.519 66.667 3.29 0.00 35.75 3.24
364 379 2.893398 GCTCCGTGACCGAGGATT 59.107 61.111 3.29 0.00 35.75 3.01
365 380 1.519455 GCTCCGTGACCGAGGATTG 60.519 63.158 3.29 0.00 35.75 2.67
367 382 1.304630 TCCGTGACCGAGGATTGGA 60.305 57.895 0.00 0.00 45.05 3.53
368 383 1.141881 CCGTGACCGAGGATTGGAG 59.858 63.158 0.00 0.00 45.05 3.86
369 384 1.141881 CGTGACCGAGGATTGGAGG 59.858 63.158 0.00 0.00 45.05 4.30
370 385 1.522569 GTGACCGAGGATTGGAGGG 59.477 63.158 0.00 0.00 45.05 4.30
371 386 1.080354 TGACCGAGGATTGGAGGGT 59.920 57.895 0.00 0.00 45.05 4.34
372 387 0.546747 TGACCGAGGATTGGAGGGTT 60.547 55.000 0.00 0.00 45.05 4.11
373 388 0.107654 GACCGAGGATTGGAGGGTTG 60.108 60.000 0.00 0.00 45.05 3.77
374 389 1.452108 CCGAGGATTGGAGGGTTGC 60.452 63.158 0.00 0.00 45.05 4.17
375 390 1.452108 CGAGGATTGGAGGGTTGCC 60.452 63.158 0.00 0.00 0.00 4.52
376 391 1.452108 GAGGATTGGAGGGTTGCCG 60.452 63.158 0.00 0.00 0.00 5.69
377 392 1.910580 GAGGATTGGAGGGTTGCCGA 61.911 60.000 0.00 0.00 0.00 5.54
378 393 1.001393 GGATTGGAGGGTTGCCGAA 60.001 57.895 0.00 0.00 0.00 4.30
379 394 1.313091 GGATTGGAGGGTTGCCGAAC 61.313 60.000 0.00 0.00 0.00 3.95
380 395 0.608035 GATTGGAGGGTTGCCGAACA 60.608 55.000 0.00 0.00 33.27 3.18
381 396 0.893727 ATTGGAGGGTTGCCGAACAC 60.894 55.000 0.00 0.00 35.50 3.32
382 397 2.112297 GGAGGGTTGCCGAACACA 59.888 61.111 0.00 0.00 38.03 3.72
383 398 1.966451 GGAGGGTTGCCGAACACAG 60.966 63.158 0.00 0.00 38.03 3.66
384 399 2.594592 AGGGTTGCCGAACACAGC 60.595 61.111 0.00 0.00 38.03 4.40
385 400 3.670377 GGGTTGCCGAACACAGCC 61.670 66.667 0.00 0.00 35.34 4.85
386 401 2.594592 GGTTGCCGAACACAGCCT 60.595 61.111 0.00 0.00 35.68 4.58
387 402 2.193536 GGTTGCCGAACACAGCCTT 61.194 57.895 0.00 0.00 35.68 4.35
388 403 0.887387 GGTTGCCGAACACAGCCTTA 60.887 55.000 0.00 0.00 35.68 2.69
389 404 0.948678 GTTGCCGAACACAGCCTTAA 59.051 50.000 0.00 0.00 31.78 1.85
467 482 0.611714 GACCCACACTAATGTCCCGT 59.388 55.000 0.00 0.00 36.72 5.28
468 483 1.002773 GACCCACACTAATGTCCCGTT 59.997 52.381 0.00 0.00 36.72 4.44
470 485 1.278127 CCCACACTAATGTCCCGTTCT 59.722 52.381 0.00 0.00 36.72 3.01
478 493 1.537814 ATGTCCCGTTCTACCGCACA 61.538 55.000 0.00 0.00 0.00 4.57
482 497 1.515954 CCGTTCTACCGCACATCCT 59.484 57.895 0.00 0.00 0.00 3.24
546 561 7.920160 ACTAAATCGCCTACTATACTACTCC 57.080 40.000 0.00 0.00 0.00 3.85
547 562 6.883756 ACTAAATCGCCTACTATACTACTCCC 59.116 42.308 0.00 0.00 0.00 4.30
548 563 5.517620 AATCGCCTACTATACTACTCCCT 57.482 43.478 0.00 0.00 0.00 4.20
549 564 4.550076 TCGCCTACTATACTACTCCCTC 57.450 50.000 0.00 0.00 0.00 4.30
550 565 3.262915 TCGCCTACTATACTACTCCCTCC 59.737 52.174 0.00 0.00 0.00 4.30
551 566 3.608796 GCCTACTATACTACTCCCTCCG 58.391 54.545 0.00 0.00 0.00 4.63
552 567 3.008923 GCCTACTATACTACTCCCTCCGT 59.991 52.174 0.00 0.00 0.00 4.69
553 568 4.831107 CCTACTATACTACTCCCTCCGTC 58.169 52.174 0.00 0.00 0.00 4.79
554 569 3.786368 ACTATACTACTCCCTCCGTCC 57.214 52.381 0.00 0.00 0.00 4.79
555 570 3.325605 ACTATACTACTCCCTCCGTCCT 58.674 50.000 0.00 0.00 0.00 3.85
556 571 4.497516 ACTATACTACTCCCTCCGTCCTA 58.502 47.826 0.00 0.00 0.00 2.94
557 572 5.100094 ACTATACTACTCCCTCCGTCCTAT 58.900 45.833 0.00 0.00 0.00 2.57
558 573 6.267635 ACTATACTACTCCCTCCGTCCTATA 58.732 44.000 0.00 0.00 0.00 1.31
559 574 6.732862 ACTATACTACTCCCTCCGTCCTATAA 59.267 42.308 0.00 0.00 0.00 0.98
560 575 6.655376 ATACTACTCCCTCCGTCCTATAAT 57.345 41.667 0.00 0.00 0.00 1.28
561 576 7.761981 ATACTACTCCCTCCGTCCTATAATA 57.238 40.000 0.00 0.00 0.00 0.98
562 577 6.655376 ACTACTCCCTCCGTCCTATAATAT 57.345 41.667 0.00 0.00 0.00 1.28
563 578 7.761981 ACTACTCCCTCCGTCCTATAATATA 57.238 40.000 0.00 0.00 0.00 0.86
564 579 8.167691 ACTACTCCCTCCGTCCTATAATATAA 57.832 38.462 0.00 0.00 0.00 0.98
565 580 8.273605 ACTACTCCCTCCGTCCTATAATATAAG 58.726 40.741 0.00 0.00 0.00 1.73
566 581 7.281366 ACTCCCTCCGTCCTATAATATAAGA 57.719 40.000 0.00 0.00 0.00 2.10
567 582 7.706674 ACTCCCTCCGTCCTATAATATAAGAA 58.293 38.462 0.00 0.00 0.00 2.52
568 583 7.614974 ACTCCCTCCGTCCTATAATATAAGAAC 59.385 40.741 0.00 0.00 0.00 3.01
569 584 7.472741 TCCCTCCGTCCTATAATATAAGAACA 58.527 38.462 0.00 0.00 0.00 3.18
570 585 8.120538 TCCCTCCGTCCTATAATATAAGAACAT 58.879 37.037 0.00 0.00 0.00 2.71
571 586 8.759782 CCCTCCGTCCTATAATATAAGAACATT 58.240 37.037 0.00 0.00 0.00 2.71
612 627 9.840427 AGATTGAAAAACGTTCTTATGTTATGG 57.160 29.630 0.00 0.00 33.20 2.74
613 628 8.980143 ATTGAAAAACGTTCTTATGTTATGGG 57.020 30.769 0.00 0.00 33.20 4.00
614 629 7.747155 TGAAAAACGTTCTTATGTTATGGGA 57.253 32.000 0.00 0.00 33.20 4.37
615 630 7.586747 TGAAAAACGTTCTTATGTTATGGGAC 58.413 34.615 0.00 0.00 33.20 4.46
616 631 5.789710 AAACGTTCTTATGTTATGGGACG 57.210 39.130 0.00 0.00 33.20 4.79
617 632 3.788937 ACGTTCTTATGTTATGGGACGG 58.211 45.455 0.00 0.00 0.00 4.79
618 633 3.448301 ACGTTCTTATGTTATGGGACGGA 59.552 43.478 0.00 0.00 0.00 4.69
619 634 4.049186 CGTTCTTATGTTATGGGACGGAG 58.951 47.826 0.00 0.00 0.00 4.63
620 635 4.377897 GTTCTTATGTTATGGGACGGAGG 58.622 47.826 0.00 0.00 0.00 4.30
621 636 2.969950 TCTTATGTTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
622 637 2.779429 TATGTTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
623 638 1.424638 ATGTTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
624 639 0.042131 TGTTATGGGACGGAGGGAGT 59.958 55.000 0.00 0.00 0.00 3.85
625 640 1.288633 TGTTATGGGACGGAGGGAGTA 59.711 52.381 0.00 0.00 0.00 2.59
626 641 2.090943 TGTTATGGGACGGAGGGAGTAT 60.091 50.000 0.00 0.00 0.00 2.12
650 665 1.836999 TTGCTGCCGTATGAGGGTGT 61.837 55.000 0.00 0.00 0.00 4.16
652 667 1.596934 CTGCCGTATGAGGGTGTGT 59.403 57.895 0.00 0.00 0.00 3.72
653 668 0.821517 CTGCCGTATGAGGGTGTGTA 59.178 55.000 0.00 0.00 0.00 2.90
654 669 0.533491 TGCCGTATGAGGGTGTGTAC 59.467 55.000 0.00 0.00 0.00 2.90
663 678 7.039923 CCGTATGAGGGTGTGTACTATTTCTAT 60.040 40.741 0.00 0.00 0.00 1.98
819 2586 1.599606 CTGGAGTAGAGCACCAGCGT 61.600 60.000 0.00 0.00 46.17 5.07
866 3886 7.741027 ATACAATGGATCTTGCAGACATAAG 57.259 36.000 0.00 0.00 0.00 1.73
887 3907 1.070289 ACGACCCACCAAGTCTTCTTC 59.930 52.381 0.00 0.00 31.83 2.87
888 3908 1.608283 CGACCCACCAAGTCTTCTTCC 60.608 57.143 0.00 0.00 31.83 3.46
889 3909 1.420138 GACCCACCAAGTCTTCTTCCA 59.580 52.381 0.00 0.00 0.00 3.53
890 3910 1.421646 ACCCACCAAGTCTTCTTCCAG 59.578 52.381 0.00 0.00 0.00 3.86
892 3912 2.307098 CCCACCAAGTCTTCTTCCAGAT 59.693 50.000 0.00 0.00 0.00 2.90
893 3913 3.245052 CCCACCAAGTCTTCTTCCAGATT 60.245 47.826 0.00 0.00 0.00 2.40
894 3914 4.401925 CCACCAAGTCTTCTTCCAGATTT 58.598 43.478 0.00 0.00 0.00 2.17
895 3915 4.217118 CCACCAAGTCTTCTTCCAGATTTG 59.783 45.833 0.00 0.00 39.22 2.32
896 3916 3.823304 ACCAAGTCTTCTTCCAGATTTGC 59.177 43.478 1.48 0.00 38.54 3.68
897 3917 3.822735 CCAAGTCTTCTTCCAGATTTGCA 59.177 43.478 1.48 0.00 38.54 4.08
898 3918 4.279169 CCAAGTCTTCTTCCAGATTTGCAA 59.721 41.667 0.00 0.00 38.54 4.08
899 3919 5.221303 CCAAGTCTTCTTCCAGATTTGCAAA 60.221 40.000 15.44 15.44 38.54 3.68
905 3925 4.464008 TCTTCCAGATTTGCAAACACTCT 58.536 39.130 15.41 10.98 0.00 3.24
906 3926 4.889409 TCTTCCAGATTTGCAAACACTCTT 59.111 37.500 15.41 0.00 0.00 2.85
919 3939 1.692519 ACACTCTTCTACCACCACCAC 59.307 52.381 0.00 0.00 0.00 4.16
921 3941 1.348064 CTCTTCTACCACCACCACCA 58.652 55.000 0.00 0.00 0.00 4.17
922 3942 1.002087 CTCTTCTACCACCACCACCAC 59.998 57.143 0.00 0.00 0.00 4.16
923 3943 0.036306 CTTCTACCACCACCACCACC 59.964 60.000 0.00 0.00 0.00 4.61
924 3944 0.694783 TTCTACCACCACCACCACCA 60.695 55.000 0.00 0.00 0.00 4.17
925 3945 1.072505 CTACCACCACCACCACCAC 59.927 63.158 0.00 0.00 0.00 4.16
926 3946 2.406002 CTACCACCACCACCACCACC 62.406 65.000 0.00 0.00 0.00 4.61
927 3947 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
928 3948 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
929 3949 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
930 3950 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
931 3951 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
932 3952 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
933 3953 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
934 3954 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
935 3955 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
936 3956 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
937 3957 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
938 3958 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
939 3959 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
940 3960 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
941 3961 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
960 3980 0.671781 CAAGCTCCCACTGACCGAAG 60.672 60.000 0.00 0.00 0.00 3.79
1069 4105 2.533318 CTCACCAAGCTGTTCGACC 58.467 57.895 0.00 0.00 0.00 4.79
1070 4106 0.951040 CTCACCAAGCTGTTCGACCC 60.951 60.000 0.00 0.00 0.00 4.46
1101 4137 0.103208 CCTACATGGACAGCTCCGAC 59.897 60.000 0.00 0.00 39.88 4.79
1137 4173 1.600916 GACCGCCAAGAACCAGCTT 60.601 57.895 0.00 0.00 0.00 3.74
1161 4197 2.851102 ACACAGGGGCTGCTGTCT 60.851 61.111 0.00 0.00 34.37 3.41
1251 4287 2.821366 GACGAGGCCGAGGACGTA 60.821 66.667 12.79 0.00 39.04 3.57
1284 4320 3.706594 TCCACTACTTCATGATCCAGGTC 59.293 47.826 0.00 0.00 0.00 3.85
1285 4321 3.708631 CCACTACTTCATGATCCAGGTCT 59.291 47.826 0.00 0.00 0.00 3.85
1288 4324 5.360999 CACTACTTCATGATCCAGGTCTGTA 59.639 44.000 0.00 0.00 0.00 2.74
1291 4327 5.519808 ACTTCATGATCCAGGTCTGTAGTA 58.480 41.667 0.00 0.00 0.00 1.82
1293 4329 5.854010 TCATGATCCAGGTCTGTAGTAAC 57.146 43.478 0.00 0.00 0.00 2.50
1294 4330 5.519808 TCATGATCCAGGTCTGTAGTAACT 58.480 41.667 0.00 0.00 0.00 2.24
1295 4331 5.360999 TCATGATCCAGGTCTGTAGTAACTG 59.639 44.000 0.00 0.00 0.00 3.16
1297 4333 5.823312 TGATCCAGGTCTGTAGTAACTGTA 58.177 41.667 0.00 0.00 0.00 2.74
1298 4334 5.886474 TGATCCAGGTCTGTAGTAACTGTAG 59.114 44.000 0.00 0.00 0.00 2.74
1300 4336 5.251764 TCCAGGTCTGTAGTAACTGTAGTC 58.748 45.833 0.00 0.00 0.00 2.59
1302 4338 6.214208 TCCAGGTCTGTAGTAACTGTAGTCTA 59.786 42.308 0.00 0.00 0.00 2.59
1303 4339 6.539464 CCAGGTCTGTAGTAACTGTAGTCTAG 59.461 46.154 0.00 0.00 0.00 2.43
1304 4340 7.104939 CAGGTCTGTAGTAACTGTAGTCTAGT 58.895 42.308 0.00 0.00 0.00 2.57
1305 4341 7.278424 CAGGTCTGTAGTAACTGTAGTCTAGTC 59.722 44.444 0.00 0.00 0.00 2.59
1306 4342 7.180766 AGGTCTGTAGTAACTGTAGTCTAGTCT 59.819 40.741 0.00 0.00 0.00 3.24
1331 4380 5.537300 AATGCATCGATCTGTAGTAACCT 57.463 39.130 0.00 0.00 0.00 3.50
1337 4386 3.119245 TCGATCTGTAGTAACCTTGGTGC 60.119 47.826 0.00 0.00 0.00 5.01
1391 4454 1.264749 TTCACCCATCCAGGACGAGG 61.265 60.000 0.00 0.00 41.22 4.63
1545 4827 0.908198 GATCCTCCTCCTGCAGTTGT 59.092 55.000 13.81 0.00 0.00 3.32
1567 4849 2.046507 GCTGCTGCTGCTACCAGT 60.047 61.111 22.10 0.00 41.26 4.00
1586 4886 2.027745 AGTAGTGAAGACATGCCTGGTG 60.028 50.000 0.00 0.00 0.00 4.17
1724 5084 3.369385 CTGCTCAAAGTCAAAACTGCAG 58.631 45.455 13.48 13.48 40.36 4.41
1849 5209 4.916983 TGAGCAAACTGTAAATGCACTT 57.083 36.364 13.33 0.00 42.45 3.16
1894 5254 2.621070 ACCCTCTCTGTTCTGCCTTTA 58.379 47.619 0.00 0.00 0.00 1.85
2045 5405 4.649692 CAAGGAGATACTTGGCTGCATAT 58.350 43.478 0.50 0.00 43.14 1.78
2061 5436 4.790937 TGCATATCTGGAACTAATGCCAA 58.209 39.130 3.41 0.00 41.72 4.52
2066 5441 4.032960 TCTGGAACTAATGCCAACACAT 57.967 40.909 0.00 0.00 32.95 3.21
2112 5487 3.144657 TCAAAGAGCCATTGCAGAGAA 57.855 42.857 0.00 0.00 41.13 2.87
2116 5491 3.988976 AGAGCCATTGCAGAGAAACTA 57.011 42.857 0.00 0.00 41.13 2.24
2125 5500 4.527509 TGCAGAGAAACTAGACTCCAAG 57.472 45.455 0.00 0.00 34.13 3.61
2167 5542 2.684374 TGATGTGTGGACATGCAATAGC 59.316 45.455 0.00 0.00 43.22 2.97
2198 5573 2.024751 TGGGAAAACCTATTAGCCCCAC 60.025 50.000 0.00 0.00 37.44 4.61
2239 5614 1.242076 GCAGCATGGTTCTTGTCACT 58.758 50.000 0.00 0.00 35.86 3.41
2242 5617 2.744202 CAGCATGGTTCTTGTCACTACC 59.256 50.000 0.00 0.00 0.00 3.18
2245 5620 1.416243 TGGTTCTTGTCACTACCCGT 58.584 50.000 0.00 0.00 0.00 5.28
2259 5634 0.981183 ACCCGTTTGCCATCTGTAGA 59.019 50.000 0.00 0.00 0.00 2.59
2288 5663 5.441500 TGGTCAAAACAACTGATCCAGTAA 58.558 37.500 0.00 0.00 44.62 2.24
2305 5680 6.245408 TCCAGTAAAACTGCATGGTTTAGAT 58.755 36.000 4.67 0.00 44.63 1.98
2329 5704 5.048504 TCCTGATGACTTCTTTGCATTGTTC 60.049 40.000 0.00 0.00 0.00 3.18
2446 5821 2.288395 ACTTGCAGCAAATACAGTTGGC 60.288 45.455 9.65 0.00 0.00 4.52
2469 5844 3.976942 CGGCTGTTGAAGAAAAACATCTG 59.023 43.478 0.00 0.00 36.95 2.90
2474 5849 5.108517 TGTTGAAGAAAAACATCTGTTGGC 58.891 37.500 0.00 0.00 38.44 4.52
2479 5854 6.922957 TGAAGAAAAACATCTGTTGGCAATAC 59.077 34.615 1.92 0.00 38.44 1.89
2804 6210 5.673337 TTTATTGCATGAACTATCTCGGC 57.327 39.130 0.00 0.00 0.00 5.54
2863 6269 8.299570 AGTTTAAGTTTTAGAGCCAATGACATG 58.700 33.333 0.00 0.00 0.00 3.21
2898 6304 5.109210 TCGGCACTTATCAATCACTGTAAG 58.891 41.667 0.00 0.00 42.29 2.34
2941 6350 7.883833 AGTTTTGGAGAGGAAATAGGTAAACTC 59.116 37.037 0.00 0.00 29.04 3.01
2966 6375 9.383519 TCAAGAGTGTAATAGACATTGGAAATC 57.616 33.333 5.96 0.00 41.14 2.17
2970 6379 7.112122 AGTGTAATAGACATTGGAAATCTGCA 58.888 34.615 0.00 0.00 41.14 4.41
2973 6382 9.276590 TGTAATAGACATTGGAAATCTGCATAG 57.723 33.333 0.00 0.00 31.20 2.23
2974 6383 6.814506 ATAGACATTGGAAATCTGCATAGC 57.185 37.500 0.00 0.00 0.00 2.97
3000 6409 9.811995 CTTGATGATTTTTGGATTACATGATGT 57.188 29.630 2.65 2.65 0.00 3.06
3132 6544 4.941873 CCACCTCCAATACCTTAAACTCAC 59.058 45.833 0.00 0.00 0.00 3.51
3152 6564 3.703556 CACACCACCTAGTGATGAGAGAT 59.296 47.826 0.00 0.00 40.34 2.75
3192 6604 8.612145 ACCTAGAACATTACCAAGATTTTACCT 58.388 33.333 0.00 0.00 0.00 3.08
3193 6605 9.462606 CCTAGAACATTACCAAGATTTTACCTT 57.537 33.333 0.00 0.00 0.00 3.50
3258 6676 7.539034 TTTTCTTTCCTAAAAGCATTAGCCT 57.461 32.000 4.27 0.00 41.44 4.58
3259 6677 7.539034 TTTCTTTCCTAAAAGCATTAGCCTT 57.461 32.000 4.27 0.00 41.44 4.35
3278 6696 3.557595 CCTTCTCATGAGTTTACGCCATC 59.442 47.826 21.92 0.00 0.00 3.51
3287 6705 6.662414 TGAGTTTACGCCATCTTTATTCTG 57.338 37.500 0.00 0.00 0.00 3.02
3288 6706 6.403049 TGAGTTTACGCCATCTTTATTCTGA 58.597 36.000 0.00 0.00 0.00 3.27
3289 6707 6.535150 TGAGTTTACGCCATCTTTATTCTGAG 59.465 38.462 0.00 0.00 0.00 3.35
3290 6708 5.817816 AGTTTACGCCATCTTTATTCTGAGG 59.182 40.000 0.00 0.00 0.00 3.86
3381 6799 9.567776 TCATGTTAAGAAAGAAAGTGTTGGATA 57.432 29.630 0.00 0.00 0.00 2.59
3419 6840 2.363683 GGGAATTGACAGAGCTTGGAG 58.636 52.381 0.00 0.00 0.00 3.86
3420 6841 2.363683 GGAATTGACAGAGCTTGGAGG 58.636 52.381 0.00 0.00 0.00 4.30
3421 6842 2.026822 GGAATTGACAGAGCTTGGAGGA 60.027 50.000 0.00 0.00 0.00 3.71
3554 6978 5.827797 GGGCAAAAGATTACAGATGGTGATA 59.172 40.000 0.00 0.00 0.00 2.15
3690 7117 9.688091 GGAGTCTCTACATCTGAATGGTATATA 57.312 37.037 0.00 0.00 37.19 0.86
3740 7167 1.073199 CCACACCTCACCAACCTCC 59.927 63.158 0.00 0.00 0.00 4.30
3763 7190 4.803329 ACTGGAGAATATTGCTGGGATT 57.197 40.909 0.00 0.00 0.00 3.01
3829 7256 6.985188 TTTATGCACCTGAAGACAGTTATC 57.015 37.500 0.00 0.00 42.05 1.75
3947 7741 2.218603 TGTCCTCGTTTTCCTTCTTGC 58.781 47.619 0.00 0.00 0.00 4.01
3967 7770 2.798145 GCAGTGTTGTACCAACCTTTGC 60.798 50.000 4.78 7.84 0.00 3.68
4010 7813 3.379452 CCAGAGTTATCTCAGTTCCCCT 58.621 50.000 3.70 0.00 42.66 4.79
4049 7852 6.390721 TCTACACTAACAGACATTTCTCTGC 58.609 40.000 0.00 0.00 41.38 4.26
4054 7857 4.558538 AACAGACATTTCTCTGCACAAC 57.441 40.909 0.00 0.00 41.38 3.32
4055 7858 2.880890 ACAGACATTTCTCTGCACAACC 59.119 45.455 0.00 0.00 41.38 3.77
4061 7864 2.623878 TTCTCTGCACAACCGGTTTA 57.376 45.000 19.55 3.57 0.00 2.01
4065 7868 1.202830 TCTGCACAACCGGTTTACCAT 60.203 47.619 19.55 0.00 35.14 3.55
4100 7903 3.953612 TGATGGAAAGTGTTTGTCTGCTT 59.046 39.130 0.00 0.00 0.00 3.91
4111 7914 7.796054 AGTGTTTGTCTGCTTATAGGTATGAT 58.204 34.615 0.00 0.00 0.00 2.45
4210 8013 4.214332 GTGTCAGACCTCCAAAAGATGAAC 59.786 45.833 0.00 0.00 0.00 3.18
4226 8029 6.043854 AGATGAACTCCCTGAGAAAACTAC 57.956 41.667 0.00 0.00 33.32 2.73
4230 8033 5.365605 TGAACTCCCTGAGAAAACTACTTGA 59.634 40.000 0.00 0.00 33.32 3.02
4231 8034 5.888982 ACTCCCTGAGAAAACTACTTGAA 57.111 39.130 0.00 0.00 33.32 2.69
4232 8035 6.441088 ACTCCCTGAGAAAACTACTTGAAT 57.559 37.500 0.00 0.00 33.32 2.57
4234 8037 6.937465 ACTCCCTGAGAAAACTACTTGAATTC 59.063 38.462 0.00 0.00 33.32 2.17
4236 8039 5.932303 CCCTGAGAAAACTACTTGAATTCGA 59.068 40.000 0.04 0.00 0.00 3.71
4238 8041 6.400091 CCTGAGAAAACTACTTGAATTCGACG 60.400 42.308 0.04 0.00 0.00 5.12
4360 8163 2.060383 TCTGATCCCAGAGGTGGCG 61.060 63.158 0.00 0.00 44.01 5.69
4413 8216 1.304052 TGGAAGAAATGCGGGTGGG 60.304 57.895 0.00 0.00 0.00 4.61
4486 8289 2.749621 CCTTCACACATTAGGGTTCTGC 59.250 50.000 0.00 0.00 0.00 4.26
4493 8296 6.326323 TCACACATTAGGGTTCTGCTATGATA 59.674 38.462 0.00 0.00 0.00 2.15
4524 8327 0.603975 ACCTTCACGGAAGAGCAAGC 60.604 55.000 13.28 0.00 41.71 4.01
4525 8328 0.321122 CCTTCACGGAAGAGCAAGCT 60.321 55.000 13.28 0.00 41.71 3.74
4553 8356 3.452627 GCTTAATCTTCTCACCTCCCTCA 59.547 47.826 0.00 0.00 0.00 3.86
4569 8372 7.231519 CACCTCCCTCAAAAGTCTAGAATTTTT 59.768 37.037 24.21 16.33 36.60 1.94
4579 8382 9.529325 AAAAGTCTAGAATTTTTAAGGTGCAAC 57.471 29.630 21.81 0.00 35.39 4.17
4619 8422 4.241681 GCTATATGGCCTTTCTTCTCTCG 58.758 47.826 3.32 0.00 0.00 4.04
4636 8439 6.818869 TCTCTCGAGAAATTTTCGATCATG 57.181 37.500 17.36 11.52 45.00 3.07
4652 8455 4.326548 CGATCATGAGATGTGATGGAATCG 59.673 45.833 0.09 0.00 39.70 3.34
4700 8503 2.143122 CCGCTTCACTGCTGAAACTAA 58.857 47.619 0.00 0.00 35.92 2.24
4719 8522 2.048597 CGTAAGTGGCTGCGGTGA 60.049 61.111 0.00 0.00 0.00 4.02
4770 8573 8.141909 ACTTAAAGAAGCAAACCCTTGTTTATC 58.858 33.333 5.47 0.00 39.08 1.75
4775 8578 5.869649 AGCAAACCCTTGTTTATCTGTTT 57.130 34.783 0.00 0.00 42.73 2.83
4948 9031 4.541250 TCCATAGGGAGATTTGCCAATT 57.459 40.909 0.00 0.00 38.64 2.32
4950 9033 3.243975 CCATAGGGAGATTTGCCAATTGC 60.244 47.826 0.00 0.00 37.25 3.56
4951 9034 5.718139 CCATAGGGAGATTTGCCAATTGCA 61.718 45.833 0.00 0.00 42.84 4.08
4966 9052 2.057137 TTGCAAGCTCAACCACTTCT 57.943 45.000 0.00 0.00 0.00 2.85
4972 9058 0.957888 GCTCAACCACTTCTGAGGGC 60.958 60.000 1.61 0.00 39.61 5.19
4992 9078 3.599343 GCTCCACGCCATGATATTATGA 58.401 45.455 8.98 0.00 0.00 2.15
4997 9083 4.154737 CCACGCCATGATATTATGAAGGTG 59.845 45.833 8.98 11.85 0.00 4.00
5014 9100 3.157087 AGGTGGCCTTCAGTTTAACATG 58.843 45.455 3.32 0.00 0.00 3.21
5023 9109 7.147976 GCCTTCAGTTTAACATGAAATTGTCT 58.852 34.615 0.00 0.00 35.14 3.41
5095 9183 6.638468 CCTTTTTGCTTTGATACAAGACTGAC 59.362 38.462 0.00 0.00 0.00 3.51
5099 9187 6.590234 TGCTTTGATACAAGACTGACTAGA 57.410 37.500 0.00 0.00 0.00 2.43
5103 9191 3.377485 TGATACAAGACTGACTAGACCGC 59.623 47.826 0.00 0.00 0.00 5.68
5112 9200 1.813178 TGACTAGACCGCTCACTTGAG 59.187 52.381 0.00 1.56 44.75 3.02
5142 9230 1.523154 TTTGCTGACGGGGCATTCAC 61.523 55.000 0.54 0.00 39.54 3.18
5160 9248 0.396435 ACGGATGGAAGCACAAGTGA 59.604 50.000 4.04 0.00 0.00 3.41
5167 9255 1.929836 GGAAGCACAAGTGAGCTATCG 59.070 52.381 4.04 0.00 41.01 2.92
5175 9263 3.056536 ACAAGTGAGCTATCGTGTGATGT 60.057 43.478 7.99 0.00 35.99 3.06
5196 9284 4.907269 TGTGCCCTTAAGAGATCCATATGA 59.093 41.667 3.65 0.00 0.00 2.15
5200 9289 6.044754 TGCCCTTAAGAGATCCATATGATGTT 59.955 38.462 3.65 0.00 32.41 2.71
5201 9290 6.944862 GCCCTTAAGAGATCCATATGATGTTT 59.055 38.462 3.65 0.00 32.41 2.83
5248 9337 7.161404 ACTAAAATGCACAACAGACTCTGATA 58.839 34.615 13.25 0.00 35.18 2.15
5254 9343 4.564041 CACAACAGACTCTGATAAGCACT 58.436 43.478 13.25 0.00 35.18 4.40
5256 9345 6.159293 CACAACAGACTCTGATAAGCACTAA 58.841 40.000 13.25 0.00 35.18 2.24
5288 9384 0.464554 GAGCCTGGGCCATCAAGTAC 60.465 60.000 6.72 0.00 43.17 2.73
5297 9393 1.134670 GCCATCAAGTACGCCTTCTCT 60.135 52.381 0.00 0.00 0.00 3.10
5298 9394 2.678190 GCCATCAAGTACGCCTTCTCTT 60.678 50.000 0.00 0.00 0.00 2.85
5299 9395 3.190874 CCATCAAGTACGCCTTCTCTTC 58.809 50.000 0.00 0.00 0.00 2.87
5300 9396 3.190874 CATCAAGTACGCCTTCTCTTCC 58.809 50.000 0.00 0.00 0.00 3.46
5301 9397 1.549170 TCAAGTACGCCTTCTCTTCCC 59.451 52.381 0.00 0.00 0.00 3.97
5302 9398 1.275291 CAAGTACGCCTTCTCTTCCCA 59.725 52.381 0.00 0.00 0.00 4.37
5303 9399 1.867363 AGTACGCCTTCTCTTCCCAT 58.133 50.000 0.00 0.00 0.00 4.00
5304 9400 1.482593 AGTACGCCTTCTCTTCCCATG 59.517 52.381 0.00 0.00 0.00 3.66
5305 9401 0.178068 TACGCCTTCTCTTCCCATGC 59.822 55.000 0.00 0.00 0.00 4.06
5306 9402 1.078214 CGCCTTCTCTTCCCATGCA 60.078 57.895 0.00 0.00 0.00 3.96
5307 9403 1.372087 CGCCTTCTCTTCCCATGCAC 61.372 60.000 0.00 0.00 0.00 4.57
5308 9404 0.034670 GCCTTCTCTTCCCATGCACT 60.035 55.000 0.00 0.00 0.00 4.40
5309 9405 1.747709 CCTTCTCTTCCCATGCACTG 58.252 55.000 0.00 0.00 0.00 3.66
5310 9406 1.280133 CCTTCTCTTCCCATGCACTGA 59.720 52.381 0.00 0.00 0.00 3.41
5311 9407 2.092538 CCTTCTCTTCCCATGCACTGAT 60.093 50.000 0.00 0.00 0.00 2.90
5312 9408 3.135348 CCTTCTCTTCCCATGCACTGATA 59.865 47.826 0.00 0.00 0.00 2.15
5316 9412 2.840038 TCTTCCCATGCACTGATACAGT 59.160 45.455 0.00 0.00 46.51 3.55
5322 9418 2.636768 TGCACTGATACAGTCGTGAG 57.363 50.000 1.22 0.00 43.43 3.51
5332 9428 6.266323 TGATACAGTCGTGAGATAAAAGAGC 58.734 40.000 0.00 0.00 45.19 4.09
5408 9505 4.576463 CACTCACTTTTTGACACCTAGCTT 59.424 41.667 0.00 0.00 0.00 3.74
5423 9521 4.932200 ACCTAGCTTGTTTCTGAAATCTCG 59.068 41.667 6.06 0.00 0.00 4.04
5442 9543 5.237815 TCTCGTGATTTACTGCTGTCATTT 58.762 37.500 0.00 0.00 0.00 2.32
5456 9557 4.378874 GCTGTCATTTCAGAAGTAGGCAAC 60.379 45.833 0.00 0.00 37.61 4.17
5462 9563 2.244695 TCAGAAGTAGGCAACCGAAGA 58.755 47.619 0.00 0.00 37.17 2.87
5467 9568 3.870633 AGTAGGCAACCGAAGAAGTAG 57.129 47.619 0.00 0.00 37.17 2.57
5486 9587 2.032680 GGCTATCCAAGGCGTTGTAA 57.967 50.000 17.23 6.20 41.50 2.41
5528 9630 5.935206 TGCCACAAGTATTTCAAGTCGATAA 59.065 36.000 0.00 0.00 0.00 1.75
5542 9644 3.022406 GTCGATAACTACAGGTGAGGGT 58.978 50.000 0.00 0.00 0.00 4.34
5559 9661 5.183904 GTGAGGGTATGCAAAATCAACTTCT 59.816 40.000 0.00 0.00 0.00 2.85
5568 9670 4.615452 GCAAAATCAACTTCTGCTCCTCAG 60.615 45.833 0.00 0.00 44.21 3.35
5575 9677 2.235898 ACTTCTGCTCCTCAGTTCATCC 59.764 50.000 0.00 0.00 43.32 3.51
5576 9678 1.198713 TCTGCTCCTCAGTTCATCCC 58.801 55.000 0.00 0.00 43.32 3.85
5585 9687 3.433314 CCTCAGTTCATCCCCTCATTCAG 60.433 52.174 0.00 0.00 0.00 3.02
5589 9691 4.406972 CAGTTCATCCCCTCATTCAGAGTA 59.593 45.833 0.00 0.00 43.12 2.59
5596 9698 7.513781 TCATCCCCTCATTCAGAGTATATGAAA 59.486 37.037 0.00 0.00 43.12 2.69
5597 9699 7.308450 TCCCCTCATTCAGAGTATATGAAAG 57.692 40.000 0.00 0.00 43.12 2.62
5599 9701 5.936956 CCCTCATTCAGAGTATATGAAAGCC 59.063 44.000 0.00 0.00 43.12 4.35
5600 9702 6.464892 CCCTCATTCAGAGTATATGAAAGCCA 60.465 42.308 0.00 0.00 43.12 4.75
5601 9703 6.426328 CCTCATTCAGAGTATATGAAAGCCAC 59.574 42.308 0.00 0.00 43.12 5.01
5602 9704 6.888105 TCATTCAGAGTATATGAAAGCCACA 58.112 36.000 0.00 0.00 39.92 4.17
5604 9706 7.443272 TCATTCAGAGTATATGAAAGCCACATG 59.557 37.037 0.00 0.00 39.92 3.21
5605 9707 6.484364 TCAGAGTATATGAAAGCCACATGA 57.516 37.500 0.00 0.00 0.00 3.07
5606 9708 6.519382 TCAGAGTATATGAAAGCCACATGAG 58.481 40.000 0.00 0.00 0.00 2.90
5613 9754 1.881973 GAAAGCCACATGAGTGCTTGA 59.118 47.619 17.32 0.00 44.53 3.02
5626 9767 7.604927 ACATGAGTGCTTGATTTAATTTGCATT 59.395 29.630 0.00 0.00 32.98 3.56
5632 9773 5.791480 GCTTGATTTAATTTGCATTGCACAC 59.209 36.000 11.66 0.00 38.71 3.82
5634 9775 7.436430 TTGATTTAATTTGCATTGCACACAT 57.564 28.000 11.66 1.03 38.71 3.21
5635 9776 7.436430 TGATTTAATTTGCATTGCACACATT 57.564 28.000 11.66 12.04 38.71 2.71
5640 9781 9.481340 TTTAATTTGCATTGCACACATTTAGTA 57.519 25.926 11.66 0.00 38.71 1.82
5654 9795 6.437162 ACACATTTAGTACATTCCCATGCTTT 59.563 34.615 0.00 0.00 33.05 3.51
5655 9796 6.974622 CACATTTAGTACATTCCCATGCTTTC 59.025 38.462 0.00 0.00 33.05 2.62
5660 10113 2.795329 ACATTCCCATGCTTTCTTCGT 58.205 42.857 0.00 0.00 33.05 3.85
5670 10123 1.453148 GCTTTCTTCGTTTGCACATGC 59.547 47.619 0.00 0.00 42.50 4.06
5685 10138 2.418280 CACATGCAACTATTACACGGCA 59.582 45.455 0.00 0.00 35.54 5.69
5687 10140 3.969117 ATGCAACTATTACACGGCATG 57.031 42.857 0.00 0.00 40.18 4.06
5743 10197 6.384258 TGCAGTATTGTTAGCTTTTGTTCA 57.616 33.333 0.00 0.00 0.00 3.18
5868 10325 6.452494 TGCTGTCAGGAATACTAAGACTAC 57.548 41.667 1.14 0.00 0.00 2.73
5885 10342 9.582431 CTAAGACTACATTTTCGACCATCTTAA 57.418 33.333 0.00 0.00 0.00 1.85
5887 10344 8.649973 AGACTACATTTTCGACCATCTTAATC 57.350 34.615 0.00 0.00 0.00 1.75
5899 10356 7.227711 TCGACCATCTTAATCTCAGAACTAGAG 59.772 40.741 0.00 0.00 34.42 2.43
5925 10382 0.461339 CAACCAGGTCGAATACGGGG 60.461 60.000 0.00 2.55 40.21 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 0.396435 ACCAGACTGATGGCGAACAA 59.604 50.000 3.32 0.00 44.80 2.83
70 71 2.659063 CCCACCAGACTGATGGCGA 61.659 63.158 10.81 0.00 44.80 5.54
78 79 3.161557 GGAGCAACCCACCAGACT 58.838 61.111 0.00 0.00 0.00 3.24
88 91 1.044611 CCTAGCTAGGAGGGAGCAAC 58.955 60.000 32.79 0.00 46.63 4.17
101 104 1.292546 AGCTTAGGAGGAACCCTAGCT 59.707 52.381 0.00 0.00 45.12 3.32
136 145 2.284190 GCAAGAGGTAAGCAGGATGAC 58.716 52.381 0.00 0.00 39.69 3.06
137 146 1.210478 GGCAAGAGGTAAGCAGGATGA 59.790 52.381 0.00 0.00 39.69 2.92
142 151 1.021390 CGGTGGCAAGAGGTAAGCAG 61.021 60.000 0.00 0.00 0.00 4.24
192 203 0.583438 CCTGACTGTGTGCAAGAACG 59.417 55.000 0.00 0.00 0.00 3.95
204 215 2.179427 TGTACACCTCCATCCTGACTG 58.821 52.381 0.00 0.00 0.00 3.51
205 216 2.623418 TGTACACCTCCATCCTGACT 57.377 50.000 0.00 0.00 0.00 3.41
206 217 3.914426 AATGTACACCTCCATCCTGAC 57.086 47.619 0.00 0.00 0.00 3.51
207 218 3.199946 GGAAATGTACACCTCCATCCTGA 59.800 47.826 16.73 0.00 0.00 3.86
209 220 3.456277 GAGGAAATGTACACCTCCATCCT 59.544 47.826 21.49 16.12 42.84 3.24
210 221 3.741388 CGAGGAAATGTACACCTCCATCC 60.741 52.174 21.49 12.63 44.96 3.51
214 229 1.066430 TGCGAGGAAATGTACACCTCC 60.066 52.381 19.95 17.42 44.96 4.30
222 237 1.176527 CACCCATTGCGAGGAAATGT 58.823 50.000 0.00 0.00 33.93 2.71
248 263 1.757699 GGGAGTTCGAACAGGCTCTAT 59.242 52.381 28.78 6.59 0.00 1.98
250 265 0.543174 AGGGAGTTCGAACAGGCTCT 60.543 55.000 28.78 19.23 0.00 4.09
251 266 0.108567 GAGGGAGTTCGAACAGGCTC 60.109 60.000 28.78 17.28 0.00 4.70
252 267 1.545706 GGAGGGAGTTCGAACAGGCT 61.546 60.000 28.78 9.31 0.00 4.58
255 270 4.891566 CGGAGGGAGTTCGAACAG 57.108 61.111 28.78 8.09 0.00 3.16
274 289 3.799753 CGGAATGGAGTTGCGGAG 58.200 61.111 0.00 0.00 46.35 4.63
284 299 3.207669 GCTGCTGCTCCGGAATGG 61.208 66.667 5.23 0.00 40.09 3.16
285 300 3.207669 GGCTGCTGCTCCGGAATG 61.208 66.667 15.64 0.00 39.59 2.67
286 301 3.694058 CTGGCTGCTGCTCCGGAAT 62.694 63.158 15.64 0.00 39.59 3.01
287 302 4.399395 CTGGCTGCTGCTCCGGAA 62.399 66.667 15.64 0.00 39.59 4.30
289 304 4.711949 AACTGGCTGCTGCTCCGG 62.712 66.667 15.64 15.46 39.59 5.14
290 305 2.786539 TACAACTGGCTGCTGCTCCG 62.787 60.000 15.64 6.64 39.59 4.63
291 306 0.606401 TTACAACTGGCTGCTGCTCC 60.606 55.000 15.64 2.78 39.59 4.70
292 307 1.457346 ATTACAACTGGCTGCTGCTC 58.543 50.000 15.64 6.34 39.59 4.26
293 308 1.915141 AATTACAACTGGCTGCTGCT 58.085 45.000 15.64 0.00 39.59 4.24
294 309 2.730550 AAATTACAACTGGCTGCTGC 57.269 45.000 7.10 7.10 38.76 5.25
295 310 4.398988 TCCATAAATTACAACTGGCTGCTG 59.601 41.667 0.00 0.00 0.00 4.41
296 311 4.599041 TCCATAAATTACAACTGGCTGCT 58.401 39.130 0.00 0.00 0.00 4.24
297 312 4.734695 GCTCCATAAATTACAACTGGCTGC 60.735 45.833 0.00 0.00 0.00 5.25
298 313 4.496341 CGCTCCATAAATTACAACTGGCTG 60.496 45.833 0.00 0.00 0.00 4.85
299 314 3.627577 CGCTCCATAAATTACAACTGGCT 59.372 43.478 0.00 0.00 0.00 4.75
300 315 3.243068 CCGCTCCATAAATTACAACTGGC 60.243 47.826 0.00 0.00 0.00 4.85
301 316 3.243068 GCCGCTCCATAAATTACAACTGG 60.243 47.826 0.00 0.00 0.00 4.00
302 317 3.627577 AGCCGCTCCATAAATTACAACTG 59.372 43.478 0.00 0.00 0.00 3.16
303 318 3.886123 AGCCGCTCCATAAATTACAACT 58.114 40.909 0.00 0.00 0.00 3.16
304 319 5.744666 TTAGCCGCTCCATAAATTACAAC 57.255 39.130 0.00 0.00 0.00 3.32
305 320 6.146510 CGTATTAGCCGCTCCATAAATTACAA 59.853 38.462 0.00 0.00 0.00 2.41
306 321 5.636121 CGTATTAGCCGCTCCATAAATTACA 59.364 40.000 0.00 0.00 0.00 2.41
307 322 5.865552 TCGTATTAGCCGCTCCATAAATTAC 59.134 40.000 0.00 0.00 0.00 1.89
308 323 6.028146 TCGTATTAGCCGCTCCATAAATTA 57.972 37.500 0.00 0.00 0.00 1.40
309 324 4.890088 TCGTATTAGCCGCTCCATAAATT 58.110 39.130 0.00 0.00 0.00 1.82
310 325 4.530710 TCGTATTAGCCGCTCCATAAAT 57.469 40.909 0.00 0.00 0.00 1.40
311 326 4.242475 CATCGTATTAGCCGCTCCATAAA 58.758 43.478 0.00 0.00 0.00 1.40
312 327 3.845178 CATCGTATTAGCCGCTCCATAA 58.155 45.455 0.00 0.00 0.00 1.90
313 328 2.416836 GCATCGTATTAGCCGCTCCATA 60.417 50.000 0.00 0.00 0.00 2.74
314 329 1.673033 GCATCGTATTAGCCGCTCCAT 60.673 52.381 0.00 0.00 0.00 3.41
315 330 0.319555 GCATCGTATTAGCCGCTCCA 60.320 55.000 0.00 0.00 0.00 3.86
316 331 0.038159 AGCATCGTATTAGCCGCTCC 60.038 55.000 0.00 0.00 0.00 4.70
317 332 1.341606 GAGCATCGTATTAGCCGCTC 58.658 55.000 0.00 0.00 39.10 5.03
318 333 0.038159 GGAGCATCGTATTAGCCGCT 60.038 55.000 0.00 0.00 34.37 5.52
319 334 1.344942 CGGAGCATCGTATTAGCCGC 61.345 60.000 0.00 0.00 34.37 6.53
320 335 2.725644 CGGAGCATCGTATTAGCCG 58.274 57.895 0.00 0.00 34.37 5.52
347 362 1.519455 CAATCCTCGGTCACGGAGC 60.519 63.158 6.85 0.00 41.39 4.70
348 363 1.141881 CCAATCCTCGGTCACGGAG 59.858 63.158 5.38 5.38 41.39 4.63
349 364 1.304630 TCCAATCCTCGGTCACGGA 60.305 57.895 0.00 0.00 41.39 4.69
350 365 1.141881 CTCCAATCCTCGGTCACGG 59.858 63.158 0.00 0.00 41.39 4.94
351 366 1.141881 CCTCCAATCCTCGGTCACG 59.858 63.158 0.00 0.00 42.74 4.35
352 367 1.265454 ACCCTCCAATCCTCGGTCAC 61.265 60.000 0.00 0.00 0.00 3.67
353 368 0.546747 AACCCTCCAATCCTCGGTCA 60.547 55.000 0.00 0.00 0.00 4.02
354 369 0.107654 CAACCCTCCAATCCTCGGTC 60.108 60.000 0.00 0.00 0.00 4.79
355 370 1.991230 CAACCCTCCAATCCTCGGT 59.009 57.895 0.00 0.00 0.00 4.69
356 371 1.452108 GCAACCCTCCAATCCTCGG 60.452 63.158 0.00 0.00 0.00 4.63
357 372 1.452108 GGCAACCCTCCAATCCTCG 60.452 63.158 0.00 0.00 0.00 4.63
358 373 1.452108 CGGCAACCCTCCAATCCTC 60.452 63.158 0.00 0.00 0.00 3.71
359 374 1.497309 TTCGGCAACCCTCCAATCCT 61.497 55.000 0.00 0.00 0.00 3.24
360 375 1.001393 TTCGGCAACCCTCCAATCC 60.001 57.895 0.00 0.00 0.00 3.01
361 376 0.608035 TGTTCGGCAACCCTCCAATC 60.608 55.000 0.00 0.00 0.00 2.67
362 377 0.893727 GTGTTCGGCAACCCTCCAAT 60.894 55.000 0.00 0.00 0.00 3.16
363 378 1.527380 GTGTTCGGCAACCCTCCAA 60.527 57.895 0.00 0.00 0.00 3.53
364 379 2.112297 GTGTTCGGCAACCCTCCA 59.888 61.111 0.00 0.00 0.00 3.86
365 380 1.966451 CTGTGTTCGGCAACCCTCC 60.966 63.158 0.00 0.00 0.00 4.30
366 381 2.617274 GCTGTGTTCGGCAACCCTC 61.617 63.158 0.00 0.00 44.61 4.30
367 382 2.594592 GCTGTGTTCGGCAACCCT 60.595 61.111 0.00 0.00 44.61 4.34
368 383 3.670377 GGCTGTGTTCGGCAACCC 61.670 66.667 1.58 0.00 46.81 4.11
369 384 0.887387 TAAGGCTGTGTTCGGCAACC 60.887 55.000 0.00 0.00 46.81 3.77
370 385 0.948678 TTAAGGCTGTGTTCGGCAAC 59.051 50.000 0.00 0.00 46.81 4.17
371 386 1.904287 ATTAAGGCTGTGTTCGGCAA 58.096 45.000 0.00 0.00 46.81 4.52
372 387 1.904287 AATTAAGGCTGTGTTCGGCA 58.096 45.000 0.00 0.00 46.81 5.69
373 388 2.745281 TGTAATTAAGGCTGTGTTCGGC 59.255 45.455 0.00 0.00 44.51 5.54
374 389 5.560966 AATGTAATTAAGGCTGTGTTCGG 57.439 39.130 0.00 0.00 32.46 4.30
375 390 8.018520 TGTAAAATGTAATTAAGGCTGTGTTCG 58.981 33.333 0.00 0.00 33.67 3.95
376 391 9.685828 TTGTAAAATGTAATTAAGGCTGTGTTC 57.314 29.630 0.00 0.00 33.67 3.18
377 392 9.691362 CTTGTAAAATGTAATTAAGGCTGTGTT 57.309 29.630 0.00 0.00 33.67 3.32
378 393 8.856103 ACTTGTAAAATGTAATTAAGGCTGTGT 58.144 29.630 0.00 0.00 33.67 3.72
381 396 9.485591 CGTACTTGTAAAATGTAATTAAGGCTG 57.514 33.333 0.00 0.00 33.67 4.85
382 397 9.223099 ACGTACTTGTAAAATGTAATTAAGGCT 57.777 29.630 0.00 0.00 33.67 4.58
389 404 9.480053 ACACACTACGTACTTGTAAAATGTAAT 57.520 29.630 5.05 0.00 0.00 1.89
410 425 5.057149 ACCTGATAGTCAAAAGACACACAC 58.943 41.667 0.00 0.00 0.00 3.82
478 493 7.712639 CAGTAACATAACTTGAGCATACAGGAT 59.287 37.037 0.00 0.00 0.00 3.24
482 497 9.366216 CTAACAGTAACATAACTTGAGCATACA 57.634 33.333 0.00 0.00 0.00 2.29
544 559 7.472741 TGTTCTTATATTATAGGACGGAGGGA 58.527 38.462 0.00 0.00 0.00 4.20
545 560 7.713734 TGTTCTTATATTATAGGACGGAGGG 57.286 40.000 0.00 0.00 0.00 4.30
586 601 9.840427 CCATAACATAAGAACGTTTTTCAATCT 57.160 29.630 7.42 0.00 0.00 2.40
587 602 9.072294 CCCATAACATAAGAACGTTTTTCAATC 57.928 33.333 7.42 0.00 0.00 2.67
588 603 8.798402 TCCCATAACATAAGAACGTTTTTCAAT 58.202 29.630 7.42 0.00 0.00 2.57
589 604 8.077386 GTCCCATAACATAAGAACGTTTTTCAA 58.923 33.333 7.42 0.00 0.00 2.69
590 605 7.571613 CGTCCCATAACATAAGAACGTTTTTCA 60.572 37.037 7.42 0.00 0.00 2.69
591 606 6.739550 CGTCCCATAACATAAGAACGTTTTTC 59.260 38.462 7.42 0.00 0.00 2.29
592 607 6.348704 CCGTCCCATAACATAAGAACGTTTTT 60.349 38.462 9.22 9.22 0.00 1.94
593 608 5.122711 CCGTCCCATAACATAAGAACGTTTT 59.877 40.000 0.46 0.00 0.00 2.43
594 609 4.632688 CCGTCCCATAACATAAGAACGTTT 59.367 41.667 0.46 0.00 0.00 3.60
595 610 4.081531 TCCGTCCCATAACATAAGAACGTT 60.082 41.667 0.00 0.00 0.00 3.99
596 611 3.448301 TCCGTCCCATAACATAAGAACGT 59.552 43.478 0.00 0.00 0.00 3.99
597 612 4.049186 CTCCGTCCCATAACATAAGAACG 58.951 47.826 0.00 0.00 0.00 3.95
598 613 4.377897 CCTCCGTCCCATAACATAAGAAC 58.622 47.826 0.00 0.00 0.00 3.01
599 614 3.389983 CCCTCCGTCCCATAACATAAGAA 59.610 47.826 0.00 0.00 0.00 2.52
600 615 2.969950 CCCTCCGTCCCATAACATAAGA 59.030 50.000 0.00 0.00 0.00 2.10
601 616 2.969950 TCCCTCCGTCCCATAACATAAG 59.030 50.000 0.00 0.00 0.00 1.73
602 617 2.969950 CTCCCTCCGTCCCATAACATAA 59.030 50.000 0.00 0.00 0.00 1.90
603 618 2.090943 ACTCCCTCCGTCCCATAACATA 60.091 50.000 0.00 0.00 0.00 2.29
604 619 1.344087 ACTCCCTCCGTCCCATAACAT 60.344 52.381 0.00 0.00 0.00 2.71
605 620 0.042131 ACTCCCTCCGTCCCATAACA 59.958 55.000 0.00 0.00 0.00 2.41
606 621 2.077687 TACTCCCTCCGTCCCATAAC 57.922 55.000 0.00 0.00 0.00 1.89
607 622 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
608 623 4.474303 TTAATACTCCCTCCGTCCCATA 57.526 45.455 0.00 0.00 0.00 2.74
609 624 3.339713 TTAATACTCCCTCCGTCCCAT 57.660 47.619 0.00 0.00 0.00 4.00
610 625 2.852714 TTAATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
611 626 4.386711 CAAATTAATACTCCCTCCGTCCC 58.613 47.826 0.00 0.00 0.00 4.46
612 627 3.813724 GCAAATTAATACTCCCTCCGTCC 59.186 47.826 0.00 0.00 0.00 4.79
613 628 4.511826 CAGCAAATTAATACTCCCTCCGTC 59.488 45.833 0.00 0.00 0.00 4.79
614 629 4.451900 CAGCAAATTAATACTCCCTCCGT 58.548 43.478 0.00 0.00 0.00 4.69
615 630 3.251004 GCAGCAAATTAATACTCCCTCCG 59.749 47.826 0.00 0.00 0.00 4.63
616 631 3.570125 GGCAGCAAATTAATACTCCCTCC 59.430 47.826 0.00 0.00 0.00 4.30
617 632 3.251004 CGGCAGCAAATTAATACTCCCTC 59.749 47.826 0.00 0.00 0.00 4.30
618 633 3.214328 CGGCAGCAAATTAATACTCCCT 58.786 45.455 0.00 0.00 0.00 4.20
619 634 2.949644 ACGGCAGCAAATTAATACTCCC 59.050 45.455 0.00 0.00 0.00 4.30
620 635 5.468746 TCATACGGCAGCAAATTAATACTCC 59.531 40.000 0.00 0.00 0.00 3.85
621 636 6.347725 CCTCATACGGCAGCAAATTAATACTC 60.348 42.308 0.00 0.00 0.00 2.59
622 637 5.470098 CCTCATACGGCAGCAAATTAATACT 59.530 40.000 0.00 0.00 0.00 2.12
623 638 5.334879 CCCTCATACGGCAGCAAATTAATAC 60.335 44.000 0.00 0.00 0.00 1.89
624 639 4.759693 CCCTCATACGGCAGCAAATTAATA 59.240 41.667 0.00 0.00 0.00 0.98
625 640 3.569701 CCCTCATACGGCAGCAAATTAAT 59.430 43.478 0.00 0.00 0.00 1.40
626 641 2.948979 CCCTCATACGGCAGCAAATTAA 59.051 45.455 0.00 0.00 0.00 1.40
663 678 9.845740 TCTATGCTTAAGTTATGGCAAGAAATA 57.154 29.630 12.79 3.36 38.21 1.40
687 702 0.033366 TGCGTACACACACATGCTCT 59.967 50.000 0.00 0.00 0.00 4.09
692 707 2.095768 GCTTCATTGCGTACACACACAT 60.096 45.455 0.00 0.00 0.00 3.21
866 3886 0.680061 AGAAGACTTGGTGGGTCGTC 59.320 55.000 0.00 0.00 40.59 4.20
887 3907 4.843220 AGAAGAGTGTTTGCAAATCTGG 57.157 40.909 16.21 0.00 0.00 3.86
888 3908 5.239306 TGGTAGAAGAGTGTTTGCAAATCTG 59.761 40.000 16.21 0.00 0.00 2.90
889 3909 5.239525 GTGGTAGAAGAGTGTTTGCAAATCT 59.760 40.000 16.21 16.12 0.00 2.40
890 3910 5.452777 GTGGTAGAAGAGTGTTTGCAAATC 58.547 41.667 16.21 9.14 0.00 2.17
892 3912 3.630312 GGTGGTAGAAGAGTGTTTGCAAA 59.370 43.478 8.05 8.05 0.00 3.68
893 3913 3.211045 GGTGGTAGAAGAGTGTTTGCAA 58.789 45.455 0.00 0.00 0.00 4.08
894 3914 2.171659 TGGTGGTAGAAGAGTGTTTGCA 59.828 45.455 0.00 0.00 0.00 4.08
895 3915 2.548480 GTGGTGGTAGAAGAGTGTTTGC 59.452 50.000 0.00 0.00 0.00 3.68
896 3916 3.139077 GGTGGTGGTAGAAGAGTGTTTG 58.861 50.000 0.00 0.00 0.00 2.93
897 3917 2.775384 TGGTGGTGGTAGAAGAGTGTTT 59.225 45.455 0.00 0.00 0.00 2.83
898 3918 2.104281 GTGGTGGTGGTAGAAGAGTGTT 59.896 50.000 0.00 0.00 0.00 3.32
899 3919 1.692519 GTGGTGGTGGTAGAAGAGTGT 59.307 52.381 0.00 0.00 0.00 3.55
905 3925 0.694783 TGGTGGTGGTGGTGGTAGAA 60.695 55.000 0.00 0.00 0.00 2.10
906 3926 1.074395 TGGTGGTGGTGGTGGTAGA 60.074 57.895 0.00 0.00 0.00 2.59
919 3939 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
921 3941 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
922 3942 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
923 3943 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
924 3944 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
925 3945 3.366406 TTGGTGGTGGTGGTGGTGG 62.366 63.158 0.00 0.00 0.00 4.61
926 3946 1.827789 CTTGGTGGTGGTGGTGGTG 60.828 63.158 0.00 0.00 0.00 4.17
927 3947 2.600731 CTTGGTGGTGGTGGTGGT 59.399 61.111 0.00 0.00 0.00 4.16
928 3948 2.912025 GCTTGGTGGTGGTGGTGG 60.912 66.667 0.00 0.00 0.00 4.61
929 3949 1.898574 GAGCTTGGTGGTGGTGGTG 60.899 63.158 0.00 0.00 0.00 4.17
930 3950 2.515901 GAGCTTGGTGGTGGTGGT 59.484 61.111 0.00 0.00 0.00 4.16
931 3951 2.282462 GGAGCTTGGTGGTGGTGG 60.282 66.667 0.00 0.00 0.00 4.61
932 3952 2.282462 GGGAGCTTGGTGGTGGTG 60.282 66.667 0.00 0.00 0.00 4.17
933 3953 2.776526 TGGGAGCTTGGTGGTGGT 60.777 61.111 0.00 0.00 0.00 4.16
934 3954 2.282462 GTGGGAGCTTGGTGGTGG 60.282 66.667 0.00 0.00 0.00 4.61
935 3955 1.601759 CAGTGGGAGCTTGGTGGTG 60.602 63.158 0.00 0.00 0.00 4.17
936 3956 1.770110 TCAGTGGGAGCTTGGTGGT 60.770 57.895 0.00 0.00 0.00 4.16
937 3957 1.302832 GTCAGTGGGAGCTTGGTGG 60.303 63.158 0.00 0.00 0.00 4.61
938 3958 1.302832 GGTCAGTGGGAGCTTGGTG 60.303 63.158 0.00 0.00 40.87 4.17
939 3959 2.883828 CGGTCAGTGGGAGCTTGGT 61.884 63.158 0.00 0.00 41.89 3.67
940 3960 2.046892 CGGTCAGTGGGAGCTTGG 60.047 66.667 0.00 0.00 41.89 3.61
941 3961 0.671781 CTTCGGTCAGTGGGAGCTTG 60.672 60.000 0.00 0.00 41.89 4.01
962 3982 1.062587 GTGCTCCGGTGATTGAAATCG 59.937 52.381 7.92 0.00 38.26 3.34
1069 4105 4.814294 GTAGGCGGACACCAGCGG 62.814 72.222 0.00 0.00 0.00 5.52
1070 4106 3.371097 ATGTAGGCGGACACCAGCG 62.371 63.158 0.00 0.00 30.52 5.18
1101 4137 2.037136 CAGGAAGTTGCTGCCGAGG 61.037 63.158 11.73 0.00 33.44 4.63
1137 4173 2.057830 CAGCCCCTGTGTGTACTGA 58.942 57.895 0.00 0.00 0.00 3.41
1251 4287 2.428544 AGTAGTGGAGCTCATCGAGT 57.571 50.000 17.19 4.20 31.39 4.18
1288 4324 9.021807 TGCATTTTAGACTAGACTACAGTTACT 57.978 33.333 1.17 0.00 0.00 2.24
1291 4327 7.702772 CGATGCATTTTAGACTAGACTACAGTT 59.297 37.037 0.00 0.00 0.00 3.16
1293 4329 7.418408 TCGATGCATTTTAGACTAGACTACAG 58.582 38.462 0.00 0.00 0.00 2.74
1294 4330 7.329588 TCGATGCATTTTAGACTAGACTACA 57.670 36.000 0.00 0.00 0.00 2.74
1295 4331 8.293867 AGATCGATGCATTTTAGACTAGACTAC 58.706 37.037 0.54 0.00 0.00 2.73
1297 4333 7.144661 CAGATCGATGCATTTTAGACTAGACT 58.855 38.462 0.54 0.00 0.00 3.24
1298 4334 6.920758 ACAGATCGATGCATTTTAGACTAGAC 59.079 38.462 0.54 0.00 0.00 2.59
1300 4336 8.079203 ACTACAGATCGATGCATTTTAGACTAG 58.921 37.037 0.54 0.00 0.00 2.57
1302 4338 6.810911 ACTACAGATCGATGCATTTTAGACT 58.189 36.000 0.54 0.00 0.00 3.24
1303 4339 8.480853 GTTACTACAGATCGATGCATTTTAGAC 58.519 37.037 0.54 0.00 0.00 2.59
1304 4340 7.652105 GGTTACTACAGATCGATGCATTTTAGA 59.348 37.037 0.54 0.00 0.00 2.10
1305 4341 7.653713 AGGTTACTACAGATCGATGCATTTTAG 59.346 37.037 0.54 0.00 0.00 1.85
1306 4342 7.497595 AGGTTACTACAGATCGATGCATTTTA 58.502 34.615 0.54 0.00 0.00 1.52
1309 4345 5.537300 AGGTTACTACAGATCGATGCATT 57.463 39.130 0.54 0.00 0.00 3.56
1337 4386 1.416813 GACAACGGCGCAGATCTCTG 61.417 60.000 16.26 2.75 46.40 3.35
1391 4454 1.450312 CCTCCTTGGTGCCATCGAC 60.450 63.158 0.00 0.00 0.00 4.20
1421 4484 2.831742 CTTGATGCTGCCGCCCAT 60.832 61.111 0.00 0.00 34.43 4.00
1430 4493 1.454479 CCGAATGGCCCTTGATGCT 60.454 57.895 0.00 0.00 0.00 3.79
1567 4849 1.339055 GCACCAGGCATGTCTTCACTA 60.339 52.381 0.00 0.00 43.97 2.74
1586 4886 4.248859 ACATCGCCATCATCATTACTAGC 58.751 43.478 0.00 0.00 0.00 3.42
1724 5084 4.731773 GCTTAATGCAATGCTACTGTGGTC 60.732 45.833 6.82 0.00 42.31 4.02
1755 5115 0.251742 TGGAGGCCTTTCAATGGTGG 60.252 55.000 6.77 0.00 0.00 4.61
1849 5209 0.179234 CATGGTATGTGCCACCGGTA 59.821 55.000 6.87 0.00 41.94 4.02
2045 5405 3.500448 TGTGTTGGCATTAGTTCCAGA 57.500 42.857 0.00 0.00 33.32 3.86
2112 5487 7.800300 ATTAAGAACCTCTTGGAGTCTAGTT 57.200 36.000 0.00 0.00 37.29 2.24
2116 5491 6.183361 ACACAATTAAGAACCTCTTGGAGTCT 60.183 38.462 0.00 0.00 37.29 3.24
2125 5500 6.817765 TCATCCAACACAATTAAGAACCTC 57.182 37.500 0.00 0.00 0.00 3.85
2167 5542 0.168128 GGTTTTCCCAATCACGCTCG 59.832 55.000 0.00 0.00 0.00 5.03
2198 5573 3.356290 CCTTGGTTTCCCCTATTGTGAG 58.644 50.000 0.00 0.00 0.00 3.51
2239 5614 2.181125 TCTACAGATGGCAAACGGGTA 58.819 47.619 0.00 0.00 0.00 3.69
2242 5617 2.422597 TGTTCTACAGATGGCAAACGG 58.577 47.619 0.00 0.00 0.00 4.44
2259 5634 6.048509 GGATCAGTTGTTTTGACCATTTGTT 58.951 36.000 0.00 0.00 0.00 2.83
2288 5663 4.922206 TCAGGATCTAAACCATGCAGTTT 58.078 39.130 8.85 8.85 42.47 2.66
2305 5680 4.401022 ACAATGCAAAGAAGTCATCAGGA 58.599 39.130 0.00 0.00 0.00 3.86
2446 5821 2.861462 TGTTTTTCTTCAACAGCCGG 57.139 45.000 0.00 0.00 30.49 6.13
2469 5844 2.435372 TCCCATCCAGTATTGCCAAC 57.565 50.000 0.00 0.00 0.00 3.77
2474 5849 7.408756 TTTCAAGAATTCCCATCCAGTATTG 57.591 36.000 0.65 0.00 0.00 1.90
2479 5854 6.594788 TTCTTTTCAAGAATTCCCATCCAG 57.405 37.500 0.65 0.00 42.31 3.86
2527 5902 4.999311 TGCAGAGATGGGAAAATATCATCG 59.001 41.667 0.00 0.00 41.35 3.84
2663 6039 8.850156 GCAATTTGAGTCTATAATACCCATTGT 58.150 33.333 0.00 0.00 0.00 2.71
2863 6269 1.210155 GTGCCGAACAGATTGTGGC 59.790 57.895 4.19 4.19 45.91 5.01
2912 6321 9.429109 TTTACCTATTTCCTCTCCAAAACTTTT 57.571 29.630 0.00 0.00 0.00 2.27
2941 6350 9.388506 AGATTTCCAATGTCTATTACACTCTTG 57.611 33.333 0.00 0.00 42.09 3.02
2966 6375 5.898174 TCCAAAAATCATCAAGCTATGCAG 58.102 37.500 0.00 0.00 0.00 4.41
2970 6379 9.976511 CATGTAATCCAAAAATCATCAAGCTAT 57.023 29.630 0.00 0.00 0.00 2.97
2973 6382 8.761497 CATCATGTAATCCAAAAATCATCAAGC 58.239 33.333 0.00 0.00 0.00 4.01
2974 6383 9.811995 ACATCATGTAATCCAAAAATCATCAAG 57.188 29.630 0.00 0.00 0.00 3.02
3012 6421 7.993101 TCCTTCAAATGCATCTTTCAGAATAG 58.007 34.615 0.00 0.00 0.00 1.73
3132 6544 7.767250 TTATATCTCTCATCACTAGGTGGTG 57.233 40.000 4.72 4.72 45.06 4.17
3192 6604 8.884124 ATCATAGAGGTCCAAGAATTTCAAAA 57.116 30.769 0.00 0.00 0.00 2.44
3193 6605 8.742777 CAATCATAGAGGTCCAAGAATTTCAAA 58.257 33.333 0.00 0.00 0.00 2.69
3258 6676 4.471904 AGATGGCGTAAACTCATGAGAA 57.528 40.909 29.27 11.03 0.00 2.87
3259 6677 4.471904 AAGATGGCGTAAACTCATGAGA 57.528 40.909 29.27 3.89 0.00 3.27
3278 6696 7.281999 GGAATGGAGTTCTTCCTCAGAATAAAG 59.718 40.741 0.00 0.00 46.92 1.85
3287 6705 3.990959 ACTGGAATGGAGTTCTTCCTC 57.009 47.619 3.27 0.00 46.92 3.71
3288 6706 4.410555 GGATACTGGAATGGAGTTCTTCCT 59.589 45.833 3.27 0.00 46.92 3.36
3289 6707 4.445019 GGGATACTGGAATGGAGTTCTTCC 60.445 50.000 0.00 0.00 46.98 3.46
3290 6708 4.410555 AGGGATACTGGAATGGAGTTCTTC 59.589 45.833 0.00 0.00 37.01 2.87
3381 6799 1.302285 CCCAGCTGGCTCAGTTCAT 59.698 57.895 28.39 0.00 33.43 2.57
3419 6840 6.931281 TCAAGATTACATATAGCAAGCTGTCC 59.069 38.462 4.53 0.00 0.00 4.02
3420 6841 7.953158 TCAAGATTACATATAGCAAGCTGTC 57.047 36.000 4.53 0.00 0.00 3.51
3421 6842 8.616076 GTTTCAAGATTACATATAGCAAGCTGT 58.384 33.333 4.53 0.00 0.00 4.40
3690 7117 1.142688 AGGTGGAAGAGTGCCCCAAT 61.143 55.000 0.00 0.00 0.00 3.16
3740 7167 3.889815 TCCCAGCAATATTCTCCAGTTG 58.110 45.455 0.00 0.00 0.00 3.16
3763 7190 2.063015 ATCCAGGCCCAAACACACGA 62.063 55.000 0.00 0.00 0.00 4.35
3829 7256 3.234234 AGTTCTGGCATATCCCCAATG 57.766 47.619 0.00 0.00 30.66 2.82
3967 7770 2.285834 GCAATCAGCAATACGAAGTCGG 60.286 50.000 5.60 0.00 42.31 4.79
4010 7813 4.861196 AGTGTAGAAGTATGAGGCAGAGA 58.139 43.478 0.00 0.00 0.00 3.10
4046 7849 1.243902 ATGGTAAACCGGTTGTGCAG 58.756 50.000 23.08 0.00 39.43 4.41
4049 7852 3.062122 ACCTATGGTAAACCGGTTGTG 57.938 47.619 23.08 5.91 39.43 3.33
4054 7857 2.674357 CGTCAAACCTATGGTAAACCGG 59.326 50.000 0.00 0.00 39.43 5.28
4055 7858 3.328505 ACGTCAAACCTATGGTAAACCG 58.671 45.455 0.00 0.00 39.43 4.44
4061 7864 4.407621 TCCATCATACGTCAAACCTATGGT 59.592 41.667 0.00 0.00 37.65 3.55
4065 7868 5.872617 CACTTTCCATCATACGTCAAACCTA 59.127 40.000 0.00 0.00 0.00 3.08
4100 7903 4.506625 GGCCAAAGCACCATCATACCTATA 60.507 45.833 0.00 0.00 42.56 1.31
4111 7914 2.605873 TGGAAGGCCAAAGCACCA 59.394 55.556 5.01 1.77 42.49 4.17
4160 7963 3.548745 TGAGACATGTGGTGATCCATC 57.451 47.619 1.15 0.00 46.20 3.51
4165 7968 4.259356 CTGACAATGAGACATGTGGTGAT 58.741 43.478 1.15 0.00 0.00 3.06
4210 8013 6.091441 CGAATTCAAGTAGTTTTCTCAGGGAG 59.909 42.308 6.22 0.00 0.00 4.30
4226 8029 2.296692 CTGGCGCCGTCGAATTCAAG 62.297 60.000 23.90 5.20 38.10 3.02
4230 8033 2.916502 TATGCTGGCGCCGTCGAATT 62.917 55.000 23.90 5.08 38.10 2.17
4231 8034 2.715532 ATATGCTGGCGCCGTCGAAT 62.716 55.000 23.90 15.02 38.10 3.34
4232 8035 2.916502 AATATGCTGGCGCCGTCGAA 62.917 55.000 23.90 7.75 38.10 3.71
4234 8037 2.943345 GAATATGCTGGCGCCGTCG 61.943 63.158 23.90 13.99 39.07 5.12
4236 8039 1.595382 GAGAATATGCTGGCGCCGT 60.595 57.895 23.90 10.36 34.43 5.68
4238 8041 1.849976 GCAGAGAATATGCTGGCGCC 61.850 60.000 22.73 22.73 40.59 6.53
4326 8129 0.175302 CAGACCTGCAGCTACAGAGG 59.825 60.000 15.91 2.99 40.25 3.69
4336 8139 0.979709 CCTCTGGGATCAGACCTGCA 60.980 60.000 0.00 0.00 44.39 4.41
4371 8174 1.901833 GGAATGAACCTGGGTGCAAAT 59.098 47.619 4.36 0.00 37.20 2.32
4406 8209 1.223487 CCAGGATGTTACCCACCCG 59.777 63.158 0.00 0.00 0.00 5.28
4407 8210 1.076995 GCCAGGATGTTACCCACCC 60.077 63.158 0.00 0.00 0.00 4.61
4413 8216 1.826385 AAGCACTGCCAGGATGTTAC 58.174 50.000 0.00 0.00 0.00 2.50
4486 8289 6.811665 TGAAGGTTTCAGTCACGTTATCATAG 59.188 38.462 0.00 0.00 34.08 2.23
4524 8327 3.308323 GGTGAGAAGATTAAGCGCTTGAG 59.692 47.826 32.23 0.00 0.00 3.02
4525 8328 3.055819 AGGTGAGAAGATTAAGCGCTTGA 60.056 43.478 32.23 25.16 0.00 3.02
4553 8356 9.529325 GTTGCACCTTAAAAATTCTAGACTTTT 57.471 29.630 13.44 13.44 0.00 2.27
4579 8382 2.422231 CCGAGGGAGAGACTGCAGG 61.422 68.421 19.93 0.00 0.00 4.85
4619 8422 7.913423 TCACATCTCATGATCGAAAATTTCTC 58.087 34.615 4.09 0.00 0.00 2.87
4636 8439 5.588568 GTGATTCGATTCCATCACATCTC 57.411 43.478 18.63 0.11 45.90 2.75
4652 8455 0.036388 TCCTTGGACGGCAGTGATTC 60.036 55.000 0.00 0.00 0.00 2.52
4700 8503 1.959226 CACCGCAGCCACTTACGTT 60.959 57.895 0.00 0.00 0.00 3.99
4715 8518 4.036144 GGCTTGCTCTTTTATCTCATCACC 59.964 45.833 0.00 0.00 0.00 4.02
4718 8521 4.122776 TCGGCTTGCTCTTTTATCTCATC 58.877 43.478 0.00 0.00 0.00 2.92
4719 8522 4.125703 CTCGGCTTGCTCTTTTATCTCAT 58.874 43.478 0.00 0.00 0.00 2.90
4770 8573 6.849502 TGAGAGTTACGTACCTCATAAACAG 58.150 40.000 20.56 0.00 32.56 3.16
4802 8621 6.716284 AGATTTCAGAAGCTAGCTAGGTTTT 58.284 36.000 32.51 26.26 43.36 2.43
4924 9007 4.916041 TGGCAAATCTCCCTATGGATAG 57.084 45.455 0.00 0.00 40.80 2.08
4925 9008 5.865977 ATTGGCAAATCTCCCTATGGATA 57.134 39.130 3.01 0.00 40.80 2.59
4926 9009 4.754411 ATTGGCAAATCTCCCTATGGAT 57.246 40.909 3.01 0.00 40.80 3.41
4927 9010 4.217510 CAATTGGCAAATCTCCCTATGGA 58.782 43.478 3.01 0.00 38.75 3.41
4929 9012 3.986277 GCAATTGGCAAATCTCCCTATG 58.014 45.455 3.01 0.00 43.97 2.23
4942 9025 0.033781 TGGTTGAGCTTGCAATTGGC 59.966 50.000 7.72 0.00 45.13 4.52
4944 9027 2.806608 AGTGGTTGAGCTTGCAATTG 57.193 45.000 0.00 0.00 0.00 2.32
4945 9028 2.961062 AGAAGTGGTTGAGCTTGCAATT 59.039 40.909 0.00 0.00 0.00 2.32
4946 9029 2.295349 CAGAAGTGGTTGAGCTTGCAAT 59.705 45.455 0.00 0.00 0.00 3.56
4947 9030 1.677576 CAGAAGTGGTTGAGCTTGCAA 59.322 47.619 0.00 0.00 0.00 4.08
4948 9031 1.134128 TCAGAAGTGGTTGAGCTTGCA 60.134 47.619 0.00 0.00 0.00 4.08
4950 9033 2.149578 CCTCAGAAGTGGTTGAGCTTG 58.850 52.381 0.00 0.00 39.54 4.01
4951 9034 1.072965 CCCTCAGAAGTGGTTGAGCTT 59.927 52.381 0.00 0.00 39.54 3.74
4972 9058 4.633126 CCTTCATAATATCATGGCGTGGAG 59.367 45.833 6.90 0.00 0.00 3.86
4997 9083 6.223120 ACAATTTCATGTTAAACTGAAGGCC 58.777 36.000 0.00 0.00 33.25 5.19
5051 9137 7.396540 AAAAGGGAAACTATGCAGATAACAG 57.603 36.000 0.00 0.00 0.00 3.16
5095 9183 1.813178 TGACTCAAGTGAGCGGTCTAG 59.187 52.381 16.64 7.85 45.79 2.43
5099 9187 1.203523 GATCTGACTCAAGTGAGCGGT 59.796 52.381 8.25 0.00 45.79 5.68
5142 9230 1.081892 CTCACTTGTGCTTCCATCCG 58.918 55.000 0.00 0.00 0.00 4.18
5160 9248 0.179073 GGGCACATCACACGATAGCT 60.179 55.000 0.00 0.00 42.67 3.32
5167 9255 3.334583 TCTCTTAAGGGCACATCACAC 57.665 47.619 1.85 0.00 0.00 3.82
5175 9263 5.549228 ACATCATATGGATCTCTTAAGGGCA 59.451 40.000 2.13 0.00 32.57 5.36
5196 9284 5.564550 AGCAACTGACCTGATAGAAAACAT 58.435 37.500 0.00 0.00 0.00 2.71
5200 9289 4.973168 ACAAGCAACTGACCTGATAGAAA 58.027 39.130 0.00 0.00 0.00 2.52
5201 9290 4.623932 ACAAGCAACTGACCTGATAGAA 57.376 40.909 0.00 0.00 0.00 2.10
5205 9294 5.483685 TTAGTACAAGCAACTGACCTGAT 57.516 39.130 0.00 0.00 0.00 2.90
5248 9337 5.470437 GCTCTCAACCTTAAACTTAGTGCTT 59.530 40.000 0.00 0.00 0.00 3.91
5254 9343 4.263331 CCCAGGCTCTCAACCTTAAACTTA 60.263 45.833 0.00 0.00 34.42 2.24
5256 9345 2.040412 CCCAGGCTCTCAACCTTAAACT 59.960 50.000 0.00 0.00 34.42 2.66
5288 9384 1.078214 TGCATGGGAAGAGAAGGCG 60.078 57.895 0.00 0.00 0.00 5.52
5297 9393 2.418609 CGACTGTATCAGTGCATGGGAA 60.419 50.000 7.14 0.00 45.44 3.97
5298 9394 1.136891 CGACTGTATCAGTGCATGGGA 59.863 52.381 7.14 0.00 45.44 4.37
5299 9395 1.134699 ACGACTGTATCAGTGCATGGG 60.135 52.381 7.14 0.00 45.44 4.00
5300 9396 1.929169 CACGACTGTATCAGTGCATGG 59.071 52.381 7.14 0.00 45.44 3.66
5301 9397 2.856557 CTCACGACTGTATCAGTGCATG 59.143 50.000 7.14 3.43 45.44 4.06
5302 9398 2.755103 TCTCACGACTGTATCAGTGCAT 59.245 45.455 7.14 0.00 45.44 3.96
5303 9399 2.159382 TCTCACGACTGTATCAGTGCA 58.841 47.619 7.14 0.00 45.44 4.57
5304 9400 2.921634 TCTCACGACTGTATCAGTGC 57.078 50.000 7.14 0.00 45.44 4.40
5305 9401 7.251281 TCTTTTATCTCACGACTGTATCAGTG 58.749 38.462 7.14 3.20 45.44 3.66
5307 9403 6.416455 GCTCTTTTATCTCACGACTGTATCAG 59.584 42.308 0.00 0.00 37.52 2.90
5308 9404 6.127730 TGCTCTTTTATCTCACGACTGTATCA 60.128 38.462 0.00 0.00 0.00 2.15
5309 9405 6.266323 TGCTCTTTTATCTCACGACTGTATC 58.734 40.000 0.00 0.00 0.00 2.24
5310 9406 6.208988 TGCTCTTTTATCTCACGACTGTAT 57.791 37.500 0.00 0.00 0.00 2.29
5311 9407 5.638596 TGCTCTTTTATCTCACGACTGTA 57.361 39.130 0.00 0.00 0.00 2.74
5312 9408 4.521130 TGCTCTTTTATCTCACGACTGT 57.479 40.909 0.00 0.00 0.00 3.55
5316 9412 3.262420 GGCTTGCTCTTTTATCTCACGA 58.738 45.455 0.00 0.00 0.00 4.35
5322 9418 4.946784 TTTCTCGGCTTGCTCTTTTATC 57.053 40.909 0.00 0.00 0.00 1.75
5332 9428 5.460646 TGCTTCTTTTAATTTCTCGGCTTG 58.539 37.500 0.00 0.00 0.00 4.01
5423 9521 6.486253 TCTGAAATGACAGCAGTAAATCAC 57.514 37.500 0.00 0.00 37.75 3.06
5434 9535 4.154918 GGTTGCCTACTTCTGAAATGACAG 59.845 45.833 0.00 0.00 39.02 3.51
5442 9543 2.244695 TCTTCGGTTGCCTACTTCTGA 58.755 47.619 0.00 0.00 0.00 3.27
5456 9557 3.243907 CCTTGGATAGCCTACTTCTTCGG 60.244 52.174 0.00 0.00 34.31 4.30
5462 9563 1.497161 ACGCCTTGGATAGCCTACTT 58.503 50.000 0.00 0.00 34.31 2.24
5467 9568 2.032680 TTACAACGCCTTGGATAGCC 57.967 50.000 0.00 0.00 0.00 3.93
5486 9587 1.238439 CACCCTCATGCAGTTCGTTT 58.762 50.000 0.00 0.00 0.00 3.60
5528 9630 2.247699 TGCATACCCTCACCTGTAGT 57.752 50.000 0.00 0.00 0.00 2.73
5559 9661 0.252881 AGGGGATGAACTGAGGAGCA 60.253 55.000 0.00 0.00 0.00 4.26
5568 9670 3.922171 ACTCTGAATGAGGGGATGAAC 57.078 47.619 0.00 0.00 46.72 3.18
5575 9677 5.936956 GGCTTTCATATACTCTGAATGAGGG 59.063 44.000 5.19 0.00 46.72 4.30
5576 9678 6.426328 GTGGCTTTCATATACTCTGAATGAGG 59.574 42.308 5.19 0.00 46.72 3.86
5585 9687 5.049818 GCACTCATGTGGCTTTCATATACTC 60.050 44.000 0.00 0.00 43.97 2.59
5589 9691 3.894759 AGCACTCATGTGGCTTTCATAT 58.105 40.909 0.00 0.00 43.97 1.78
5596 9698 2.211250 AATCAAGCACTCATGTGGCT 57.789 45.000 0.00 2.74 43.97 4.75
5597 9699 4.439305 TTAAATCAAGCACTCATGTGGC 57.561 40.909 0.00 0.45 43.97 5.01
5599 9701 6.366604 TGCAAATTAAATCAAGCACTCATGTG 59.633 34.615 0.00 0.00 46.37 3.21
5600 9702 6.457355 TGCAAATTAAATCAAGCACTCATGT 58.543 32.000 0.00 0.00 0.00 3.21
5601 9703 6.954616 TGCAAATTAAATCAAGCACTCATG 57.045 33.333 0.00 0.00 0.00 3.07
5602 9704 7.413657 GCAATGCAAATTAAATCAAGCACTCAT 60.414 33.333 0.00 0.00 34.54 2.90
5604 9706 6.128499 TGCAATGCAAATTAAATCAAGCACTC 60.128 34.615 5.01 0.00 34.76 3.51
5605 9707 5.701750 TGCAATGCAAATTAAATCAAGCACT 59.298 32.000 5.01 0.00 34.76 4.40
5606 9708 5.791480 GTGCAATGCAAATTAAATCAAGCAC 59.209 36.000 10.44 0.00 41.47 4.40
5613 9754 9.001542 ACTAAATGTGTGCAATGCAAATTAAAT 57.998 25.926 10.44 0.00 41.47 1.40
5626 9767 4.657013 TGGGAATGTACTAAATGTGTGCA 58.343 39.130 0.00 0.00 34.81 4.57
5632 9773 7.338800 AGAAAGCATGGGAATGTACTAAATG 57.661 36.000 0.00 0.00 0.00 2.32
5634 9775 6.093495 CGAAGAAAGCATGGGAATGTACTAAA 59.907 38.462 0.00 0.00 0.00 1.85
5635 9776 5.584649 CGAAGAAAGCATGGGAATGTACTAA 59.415 40.000 0.00 0.00 0.00 2.24
5640 9781 2.795329 ACGAAGAAAGCATGGGAATGT 58.205 42.857 0.00 0.00 0.00 2.71
5743 10197 7.873699 AATAGGTGCTGTCTAATATTAGGGT 57.126 36.000 19.98 2.28 0.00 4.34
5771 10226 3.715495 CAAACTGGCATGTGCTGTTTAA 58.285 40.909 20.01 0.00 41.51 1.52
5772 10227 2.545532 GCAAACTGGCATGTGCTGTTTA 60.546 45.455 20.01 0.48 41.51 2.01
5777 10232 3.859221 TGCAAACTGGCATGTGCT 58.141 50.000 15.40 0.00 39.25 4.40
5868 10325 7.776933 TCTGAGATTAAGATGGTCGAAAATG 57.223 36.000 0.00 0.00 0.00 2.32
5885 10342 3.295973 GCCTGTCCTCTAGTTCTGAGAT 58.704 50.000 0.00 0.00 33.68 2.75
5887 10344 2.451490 TGCCTGTCCTCTAGTTCTGAG 58.549 52.381 0.00 0.00 0.00 3.35
5899 10356 2.358737 CGACCTGGTTGCCTGTCC 60.359 66.667 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.