Multiple sequence alignment - TraesCS2B01G557700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G557700 chr2B 100.000 3642 0 0 1 3642 752405956 752402315 0.000000e+00 6726.0
1 TraesCS2B01G557700 chr2B 89.882 425 33 8 127 547 752475876 752475458 4.140000e-149 538.0
2 TraesCS2B01G557700 chr2B 82.759 145 21 4 8 150 752476210 752476068 3.820000e-25 126.0
3 TraesCS2B01G557700 chr2B 94.595 37 0 2 3560 3596 153543027 153542993 5.080000e-04 56.5
4 TraesCS2B01G557700 chr2B 94.595 37 0 2 3560 3596 171204448 171204414 5.080000e-04 56.5
5 TraesCS2B01G557700 chr2D 88.557 1005 53 25 1997 2977 616936800 616935834 0.000000e+00 1162.0
6 TraesCS2B01G557700 chr2D 84.215 1077 84 48 54 1118 616938627 616937625 0.000000e+00 968.0
7 TraesCS2B01G557700 chr2D 92.658 681 25 10 2975 3642 616935783 616935115 0.000000e+00 957.0
8 TraesCS2B01G557700 chr2D 85.943 811 60 23 1224 1993 616937628 616936831 0.000000e+00 817.0
9 TraesCS2B01G557700 chr2D 92.000 175 12 1 1837 2009 10056992 10057166 1.010000e-60 244.0
10 TraesCS2B01G557700 chr2A 90.695 806 48 16 2179 2977 746933259 746932474 0.000000e+00 1048.0
11 TraesCS2B01G557700 chr2A 90.159 630 34 16 3010 3627 746925946 746925333 0.000000e+00 795.0
12 TraesCS2B01G557700 chr2A 86.926 719 44 23 709 1413 746934746 746934064 0.000000e+00 761.0
13 TraesCS2B01G557700 chr2A 87.779 671 53 14 58 726 746935777 746935134 0.000000e+00 758.0
14 TraesCS2B01G557700 chr2A 90.832 469 25 8 1476 1935 746933979 746933520 2.400000e-171 612.0
15 TraesCS2B01G557700 chr2A 88.757 169 16 3 1997 2162 746933412 746933244 1.710000e-48 204.0
16 TraesCS2B01G557700 chr2A 97.778 45 1 0 504 548 746952749 746952705 1.080000e-10 78.7
17 TraesCS2B01G557700 chr2A 76.687 163 13 9 1132 1291 746952621 746952481 2.350000e-07 67.6
18 TraesCS2B01G557700 chr1D 93.103 174 11 1 1837 2009 16467710 16467883 1.680000e-63 254.0
19 TraesCS2B01G557700 chrUn 91.954 174 13 1 1837 2009 70723409 70723582 3.630000e-60 243.0
20 TraesCS2B01G557700 chrUn 85.083 181 23 4 1 179 9574388 9574210 8.030000e-42 182.0
21 TraesCS2B01G557700 chr3B 92.361 144 11 0 1866 2009 16867339 16867196 4.770000e-49 206.0
22 TraesCS2B01G557700 chr7D 82.488 217 31 7 3061 3273 439237171 439237384 2.230000e-42 183.0
23 TraesCS2B01G557700 chr1B 94.118 119 7 0 1891 2009 32165235 32165117 8.030000e-42 182.0
24 TraesCS2B01G557700 chr1B 92.391 92 7 0 1891 1982 87283418 87283327 8.210000e-27 132.0
25 TraesCS2B01G557700 chr1B 100.000 30 0 0 3560 3589 464326774 464326803 5.080000e-04 56.5
26 TraesCS2B01G557700 chr7B 88.000 100 12 0 1303 1402 740313306 740313405 6.390000e-23 119.0
27 TraesCS2B01G557700 chr7B 94.595 37 0 2 3560 3596 29680182 29680148 5.080000e-04 56.5
28 TraesCS2B01G557700 chr7B 94.595 37 0 2 3560 3596 605226006 605225972 5.080000e-04 56.5
29 TraesCS2B01G557700 chr5B 94.595 37 0 2 3560 3596 640025866 640025832 5.080000e-04 56.5
30 TraesCS2B01G557700 chr4B 100.000 30 0 0 3560 3589 145247925 145247954 5.080000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G557700 chr2B 752402315 752405956 3641 True 6726.0 6726 100.00000 1 3642 1 chr2B.!!$R3 3641
1 TraesCS2B01G557700 chr2B 752475458 752476210 752 True 332.0 538 86.32050 8 547 2 chr2B.!!$R4 539
2 TraesCS2B01G557700 chr2D 616935115 616938627 3512 True 976.0 1162 87.84325 54 3642 4 chr2D.!!$R1 3588
3 TraesCS2B01G557700 chr2A 746925333 746925946 613 True 795.0 795 90.15900 3010 3627 1 chr2A.!!$R1 617
4 TraesCS2B01G557700 chr2A 746932474 746935777 3303 True 676.6 1048 88.99780 58 2977 5 chr2A.!!$R2 2919

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.033504 TTCGTCACCTGGAGTTCAGC 59.966 55.0 0.00 0.00 42.05 4.26 F
285 518 0.103208 GAGTATGCGGAGTGGAGGTG 59.897 60.0 0.00 0.00 0.00 4.00 F
1182 1877 0.097674 GCATCCTGCATTGTCGACAC 59.902 55.0 19.90 7.80 44.26 3.67 F
2156 3032 0.034059 ACGTGCTCTTCAAGACCAGG 59.966 55.0 1.56 1.56 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1169 1864 0.105778 TCAGTGGTGTCGACAATGCA 59.894 50.000 21.95 0.0 34.25 3.96 R
1208 1903 0.179032 TCCTGCCACGACAACACAAT 60.179 50.000 0.00 0.0 0.00 2.71 R
2416 3298 0.099436 GGCATGATGAACACGAAGCC 59.901 55.000 0.00 0.0 0.00 4.35 R
3338 4308 1.812571 AGCGGTCTAATGTTTGCCAAG 59.187 47.619 0.00 0.0 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.033504 TTCGTCACCTGGAGTTCAGC 59.966 55.000 0.00 0.00 42.05 4.26
36 37 0.827925 TCGTCACCTGGAGTTCAGCT 60.828 55.000 0.00 0.00 42.05 4.24
37 38 0.888619 CGTCACCTGGAGTTCAGCTA 59.111 55.000 0.00 0.00 42.05 3.32
38 39 1.272490 CGTCACCTGGAGTTCAGCTAA 59.728 52.381 0.00 0.00 42.05 3.09
39 40 2.093973 CGTCACCTGGAGTTCAGCTAAT 60.094 50.000 0.00 0.00 42.05 1.73
41 42 2.906389 TCACCTGGAGTTCAGCTAATGT 59.094 45.455 0.00 0.00 42.05 2.71
43 44 3.438087 CACCTGGAGTTCAGCTAATGTTG 59.562 47.826 0.00 0.00 42.05 3.33
44 45 3.327757 ACCTGGAGTTCAGCTAATGTTGA 59.672 43.478 0.00 0.00 42.05 3.18
45 46 3.937706 CCTGGAGTTCAGCTAATGTTGAG 59.062 47.826 0.00 0.00 42.05 3.02
46 47 3.937706 CTGGAGTTCAGCTAATGTTGAGG 59.062 47.826 0.00 0.00 36.60 3.86
47 48 3.274288 GGAGTTCAGCTAATGTTGAGGG 58.726 50.000 0.00 0.00 34.97 4.30
49 50 2.025887 AGTTCAGCTAATGTTGAGGGGG 60.026 50.000 0.00 0.00 34.97 5.40
63 65 4.225703 GGGGGAATGCGGCAATGC 62.226 66.667 6.82 3.27 0.00 3.56
74 76 2.008045 GCGGCAATGCAATGTGGAATT 61.008 47.619 7.79 0.00 34.15 2.17
77 79 2.933906 GGCAATGCAATGTGGAATTGAG 59.066 45.455 7.79 0.00 0.00 3.02
207 425 1.598130 ACCGAAGTGCTGCAGTTCC 60.598 57.895 32.97 20.60 39.76 3.62
213 431 2.591429 TGCTGCAGTTCCCACACG 60.591 61.111 16.64 0.00 0.00 4.49
237 461 4.767841 CGCGCGTCAGAGAGCAGT 62.768 66.667 24.19 0.00 36.73 4.40
240 464 1.585002 CGCGTCAGAGAGCAGTAGC 60.585 63.158 0.00 0.00 42.56 3.58
241 465 1.508545 GCGTCAGAGAGCAGTAGCA 59.491 57.895 0.00 0.00 45.49 3.49
242 466 0.525242 GCGTCAGAGAGCAGTAGCAG 60.525 60.000 0.00 0.00 45.49 4.24
243 467 0.525242 CGTCAGAGAGCAGTAGCAGC 60.525 60.000 0.00 0.00 45.49 5.25
244 468 0.529833 GTCAGAGAGCAGTAGCAGCA 59.470 55.000 0.00 0.00 45.49 4.41
247 471 1.521234 GAGAGCAGTAGCAGCAGGC 60.521 63.158 0.00 0.00 45.49 4.85
257 481 2.763215 CAGCAGGCAAAGGGGGTA 59.237 61.111 0.00 0.00 0.00 3.69
258 482 1.379044 CAGCAGGCAAAGGGGGTAG 60.379 63.158 0.00 0.00 0.00 3.18
259 483 1.541368 AGCAGGCAAAGGGGGTAGA 60.541 57.895 0.00 0.00 0.00 2.59
262 495 0.543749 CAGGCAAAGGGGGTAGAGAG 59.456 60.000 0.00 0.00 0.00 3.20
268 501 3.295973 CAAAGGGGGTAGAGAGAGAGAG 58.704 54.545 0.00 0.00 0.00 3.20
269 502 2.296943 AGGGGGTAGAGAGAGAGAGT 57.703 55.000 0.00 0.00 0.00 3.24
270 503 3.441505 AGGGGGTAGAGAGAGAGAGTA 57.558 52.381 0.00 0.00 0.00 2.59
271 504 3.962559 AGGGGGTAGAGAGAGAGAGTAT 58.037 50.000 0.00 0.00 0.00 2.12
276 509 3.244284 GGTAGAGAGAGAGAGTATGCGGA 60.244 52.174 0.00 0.00 0.00 5.54
278 511 2.438021 AGAGAGAGAGAGTATGCGGAGT 59.562 50.000 0.00 0.00 0.00 3.85
285 518 0.103208 GAGTATGCGGAGTGGAGGTG 59.897 60.000 0.00 0.00 0.00 4.00
503 736 3.403558 GGTGGAGGAGGTCAGGGC 61.404 72.222 0.00 0.00 0.00 5.19
558 801 4.988598 CGACAGCAACCCAGCCGT 62.989 66.667 0.00 0.00 34.23 5.68
585 829 5.643777 CGGATGTCAAACTGAAGTTTATCCT 59.356 40.000 22.25 9.23 45.54 3.24
587 831 6.094186 GGATGTCAAACTGAAGTTTATCCTCC 59.906 42.308 19.82 16.18 45.54 4.30
623 867 4.451652 GCCGCAGCGCTTTGTCTC 62.452 66.667 7.50 0.00 0.00 3.36
626 870 2.774774 GCAGCGCTTTGTCTCTCG 59.225 61.111 7.50 0.00 0.00 4.04
656 902 2.988684 GCCCAACGCATTCCACCA 60.989 61.111 0.00 0.00 37.47 4.17
760 1412 1.583054 AACAGCAACCTCGTCAGTTC 58.417 50.000 0.00 0.00 0.00 3.01
774 1426 1.553248 TCAGTTCCCACGATAACAGGG 59.447 52.381 0.00 0.00 44.22 4.45
775 1427 0.909623 AGTTCCCACGATAACAGGGG 59.090 55.000 0.00 0.00 43.03 4.79
819 1471 1.841277 ACCACAACCACAACCACTAGA 59.159 47.619 0.00 0.00 0.00 2.43
820 1472 2.441750 ACCACAACCACAACCACTAGAT 59.558 45.455 0.00 0.00 0.00 1.98
821 1473 3.117663 ACCACAACCACAACCACTAGATT 60.118 43.478 0.00 0.00 0.00 2.40
822 1474 3.502211 CCACAACCACAACCACTAGATTC 59.498 47.826 0.00 0.00 0.00 2.52
823 1475 3.502211 CACAACCACAACCACTAGATTCC 59.498 47.826 0.00 0.00 0.00 3.01
824 1476 2.742053 CAACCACAACCACTAGATTCCG 59.258 50.000 0.00 0.00 0.00 4.30
825 1477 2.253610 ACCACAACCACTAGATTCCGA 58.746 47.619 0.00 0.00 0.00 4.55
826 1478 2.233922 ACCACAACCACTAGATTCCGAG 59.766 50.000 0.00 0.00 0.00 4.63
827 1479 2.271800 CACAACCACTAGATTCCGAGC 58.728 52.381 0.00 0.00 0.00 5.03
828 1480 1.899814 ACAACCACTAGATTCCGAGCA 59.100 47.619 0.00 0.00 0.00 4.26
829 1481 2.271800 CAACCACTAGATTCCGAGCAC 58.728 52.381 0.00 0.00 0.00 4.40
830 1482 0.456221 ACCACTAGATTCCGAGCACG 59.544 55.000 0.00 0.00 39.43 5.34
831 1483 0.456221 CCACTAGATTCCGAGCACGT 59.544 55.000 2.18 0.00 37.88 4.49
832 1484 1.674441 CCACTAGATTCCGAGCACGTA 59.326 52.381 2.18 0.00 37.88 3.57
863 1548 1.804748 CTAAGCGAAGGAACCACCAAC 59.195 52.381 0.00 0.00 42.04 3.77
871 1556 2.203480 AACCACCAACGCCATGCT 60.203 55.556 0.00 0.00 0.00 3.79
922 1607 2.349167 TCCAGCTCCCCTGCATATAT 57.651 50.000 0.00 0.00 40.36 0.86
931 1616 3.716353 TCCCCTGCATATATATCGCCATT 59.284 43.478 11.95 0.00 0.00 3.16
932 1617 4.904853 TCCCCTGCATATATATCGCCATTA 59.095 41.667 11.95 0.00 0.00 1.90
948 1633 4.262377 CGCCATTATGTCCTCTGAATCTCT 60.262 45.833 0.00 0.00 0.00 3.10
953 1638 7.256225 CCATTATGTCCTCTGAATCTCTCATCA 60.256 40.741 0.00 0.00 32.14 3.07
955 1640 5.336150 TGTCCTCTGAATCTCTCATCAAC 57.664 43.478 0.00 0.00 32.14 3.18
961 1646 4.081254 TCTGAATCTCTCATCAACCAGGTG 60.081 45.833 0.00 0.00 32.14 4.00
962 1647 2.706339 ATCTCTCATCAACCAGGTGC 57.294 50.000 0.00 0.00 0.00 5.01
963 1648 1.351076 TCTCTCATCAACCAGGTGCA 58.649 50.000 0.00 0.00 0.00 4.57
968 1663 2.234661 CTCATCAACCAGGTGCAGAGTA 59.765 50.000 0.00 0.00 0.00 2.59
978 1673 1.270839 GGTGCAGAGTACCTTGAGCAA 60.271 52.381 0.00 0.00 35.30 3.91
986 1681 1.272769 GTACCTTGAGCAACGAGACCT 59.727 52.381 0.00 0.00 31.94 3.85
987 1682 1.629043 ACCTTGAGCAACGAGACCTA 58.371 50.000 0.00 0.00 31.94 3.08
988 1683 1.272769 ACCTTGAGCAACGAGACCTAC 59.727 52.381 0.00 0.00 31.94 3.18
989 1684 1.404315 CCTTGAGCAACGAGACCTACC 60.404 57.143 0.00 0.00 31.94 3.18
990 1685 1.272490 CTTGAGCAACGAGACCTACCA 59.728 52.381 0.00 0.00 31.94 3.25
1114 1809 2.012237 CTCACATGCCAGATCGCAC 58.988 57.895 0.00 0.00 42.70 5.34
1115 1810 0.741927 CTCACATGCCAGATCGCACA 60.742 55.000 0.00 0.00 42.70 4.57
1116 1811 0.741927 TCACATGCCAGATCGCACAG 60.742 55.000 0.00 0.00 42.70 3.66
1117 1812 1.450848 ACATGCCAGATCGCACAGG 60.451 57.895 0.00 0.00 42.70 4.00
1118 1813 1.450848 CATGCCAGATCGCACAGGT 60.451 57.895 0.00 0.00 42.70 4.00
1119 1814 0.179076 CATGCCAGATCGCACAGGTA 60.179 55.000 0.00 0.00 42.70 3.08
1120 1815 0.541392 ATGCCAGATCGCACAGGTAA 59.459 50.000 0.00 0.00 42.70 2.85
1121 1816 0.323302 TGCCAGATCGCACAGGTAAA 59.677 50.000 0.00 0.00 32.62 2.01
1122 1817 1.271108 TGCCAGATCGCACAGGTAAAA 60.271 47.619 0.00 0.00 32.62 1.52
1123 1818 1.398390 GCCAGATCGCACAGGTAAAAG 59.602 52.381 0.00 0.00 0.00 2.27
1124 1819 2.935238 GCCAGATCGCACAGGTAAAAGA 60.935 50.000 0.00 0.00 0.00 2.52
1125 1820 3.334691 CCAGATCGCACAGGTAAAAGAA 58.665 45.455 0.00 0.00 0.00 2.52
1126 1821 3.751175 CCAGATCGCACAGGTAAAAGAAA 59.249 43.478 0.00 0.00 0.00 2.52
1127 1822 4.215399 CCAGATCGCACAGGTAAAAGAAAA 59.785 41.667 0.00 0.00 0.00 2.29
1128 1823 5.278266 CCAGATCGCACAGGTAAAAGAAAAA 60.278 40.000 0.00 0.00 0.00 1.94
1156 1851 8.500753 AACTTGTCATTCTGTTTACTGTAACA 57.499 30.769 0.00 1.89 36.63 2.41
1157 1852 8.677148 ACTTGTCATTCTGTTTACTGTAACAT 57.323 30.769 0.00 0.00 37.39 2.71
1158 1853 8.774586 ACTTGTCATTCTGTTTACTGTAACATC 58.225 33.333 0.00 0.00 37.39 3.06
1159 1854 8.902540 TTGTCATTCTGTTTACTGTAACATCT 57.097 30.769 0.00 0.00 37.39 2.90
1160 1855 8.902540 TGTCATTCTGTTTACTGTAACATCTT 57.097 30.769 0.00 0.00 37.39 2.40
1161 1856 9.337396 TGTCATTCTGTTTACTGTAACATCTTT 57.663 29.630 0.00 0.00 37.39 2.52
1162 1857 9.599322 GTCATTCTGTTTACTGTAACATCTTTG 57.401 33.333 0.00 0.00 37.39 2.77
1163 1858 8.783093 TCATTCTGTTTACTGTAACATCTTTGG 58.217 33.333 0.00 0.00 37.39 3.28
1164 1859 6.554334 TCTGTTTACTGTAACATCTTTGGC 57.446 37.500 0.00 0.00 37.39 4.52
1165 1860 6.058833 TCTGTTTACTGTAACATCTTTGGCA 58.941 36.000 0.00 0.00 37.39 4.92
1166 1861 6.714810 TCTGTTTACTGTAACATCTTTGGCAT 59.285 34.615 0.00 0.00 37.39 4.40
1167 1862 6.908825 TGTTTACTGTAACATCTTTGGCATC 58.091 36.000 0.00 0.00 33.31 3.91
1168 1863 6.072175 TGTTTACTGTAACATCTTTGGCATCC 60.072 38.462 0.00 0.00 33.31 3.51
1169 1864 4.307032 ACTGTAACATCTTTGGCATCCT 57.693 40.909 0.00 0.00 0.00 3.24
1170 1865 4.012374 ACTGTAACATCTTTGGCATCCTG 58.988 43.478 0.00 0.00 0.00 3.86
1171 1866 2.754552 TGTAACATCTTTGGCATCCTGC 59.245 45.455 0.00 0.00 44.08 4.85
1181 1876 2.470156 GCATCCTGCATTGTCGACA 58.530 52.632 15.76 15.76 44.26 4.35
1182 1877 0.097674 GCATCCTGCATTGTCGACAC 59.902 55.000 19.90 7.80 44.26 3.67
1183 1878 0.729116 CATCCTGCATTGTCGACACC 59.271 55.000 19.90 10.31 0.00 4.16
1184 1879 0.324614 ATCCTGCATTGTCGACACCA 59.675 50.000 19.90 14.40 0.00 4.17
1185 1880 0.602638 TCCTGCATTGTCGACACCAC 60.603 55.000 19.90 10.76 0.00 4.16
1186 1881 0.603707 CCTGCATTGTCGACACCACT 60.604 55.000 19.90 0.10 0.00 4.00
1187 1882 0.514255 CTGCATTGTCGACACCACTG 59.486 55.000 19.90 14.08 0.00 3.66
1188 1883 0.105778 TGCATTGTCGACACCACTGA 59.894 50.000 19.90 2.14 0.00 3.41
1189 1884 1.225855 GCATTGTCGACACCACTGAA 58.774 50.000 19.90 1.27 0.00 3.02
1190 1885 1.601903 GCATTGTCGACACCACTGAAA 59.398 47.619 19.90 0.39 0.00 2.69
1191 1886 2.602217 GCATTGTCGACACCACTGAAAC 60.602 50.000 19.90 0.00 0.00 2.78
1192 1887 1.658994 TTGTCGACACCACTGAAACC 58.341 50.000 19.90 0.00 0.00 3.27
1193 1888 0.828022 TGTCGACACCACTGAAACCT 59.172 50.000 15.76 0.00 0.00 3.50
1194 1889 1.208535 TGTCGACACCACTGAAACCTT 59.791 47.619 15.76 0.00 0.00 3.50
1195 1890 2.431419 TGTCGACACCACTGAAACCTTA 59.569 45.455 15.76 0.00 0.00 2.69
1196 1891 3.118702 TGTCGACACCACTGAAACCTTAA 60.119 43.478 15.76 0.00 0.00 1.85
1197 1892 3.872771 GTCGACACCACTGAAACCTTAAA 59.127 43.478 11.55 0.00 0.00 1.52
1198 1893 4.514066 GTCGACACCACTGAAACCTTAAAT 59.486 41.667 11.55 0.00 0.00 1.40
1199 1894 4.513692 TCGACACCACTGAAACCTTAAATG 59.486 41.667 0.00 0.00 0.00 2.32
1200 1895 4.320202 CGACACCACTGAAACCTTAAATGG 60.320 45.833 0.00 0.00 0.00 3.16
1201 1896 3.895041 ACACCACTGAAACCTTAAATGGG 59.105 43.478 0.00 0.00 0.00 4.00
1202 1897 2.897326 ACCACTGAAACCTTAAATGGGC 59.103 45.455 0.00 0.00 0.00 5.36
1203 1898 2.094752 CCACTGAAACCTTAAATGGGCG 60.095 50.000 0.00 0.00 0.00 6.13
1204 1899 2.817258 CACTGAAACCTTAAATGGGCGA 59.183 45.455 0.00 0.00 0.00 5.54
1205 1900 3.443681 CACTGAAACCTTAAATGGGCGAT 59.556 43.478 0.00 0.00 0.00 4.58
1206 1901 4.082245 CACTGAAACCTTAAATGGGCGATT 60.082 41.667 0.00 0.00 0.00 3.34
1207 1902 4.082245 ACTGAAACCTTAAATGGGCGATTG 60.082 41.667 0.00 0.00 0.00 2.67
1208 1903 4.082845 TGAAACCTTAAATGGGCGATTGA 58.917 39.130 0.00 0.00 0.00 2.57
1209 1904 4.709397 TGAAACCTTAAATGGGCGATTGAT 59.291 37.500 0.00 0.00 0.00 2.57
1210 1905 5.186797 TGAAACCTTAAATGGGCGATTGATT 59.813 36.000 0.00 0.00 0.00 2.57
1211 1906 4.654091 ACCTTAAATGGGCGATTGATTG 57.346 40.909 0.00 0.00 0.00 2.67
1212 1907 4.023291 ACCTTAAATGGGCGATTGATTGT 58.977 39.130 0.00 0.00 0.00 2.71
1213 1908 4.142182 ACCTTAAATGGGCGATTGATTGTG 60.142 41.667 0.00 0.00 0.00 3.33
1214 1909 4.142182 CCTTAAATGGGCGATTGATTGTGT 60.142 41.667 0.00 0.00 0.00 3.72
1215 1910 3.959535 AAATGGGCGATTGATTGTGTT 57.040 38.095 0.00 0.00 0.00 3.32
1216 1911 2.945447 ATGGGCGATTGATTGTGTTG 57.055 45.000 0.00 0.00 0.00 3.33
1217 1912 1.614996 TGGGCGATTGATTGTGTTGT 58.385 45.000 0.00 0.00 0.00 3.32
1218 1913 1.539388 TGGGCGATTGATTGTGTTGTC 59.461 47.619 0.00 0.00 0.00 3.18
1219 1914 1.465689 GGGCGATTGATTGTGTTGTCG 60.466 52.381 0.00 0.00 0.00 4.35
1220 1915 1.196808 GGCGATTGATTGTGTTGTCGT 59.803 47.619 0.00 0.00 0.00 4.34
1221 1916 2.233355 GCGATTGATTGTGTTGTCGTG 58.767 47.619 0.00 0.00 0.00 4.35
1222 1917 2.838275 CGATTGATTGTGTTGTCGTGG 58.162 47.619 0.00 0.00 0.00 4.94
1406 2188 2.508663 GCACCTTCGACTACGCCC 60.509 66.667 0.00 0.00 39.58 6.13
1413 2195 1.966493 TTCGACTACGCCCGTACGTC 61.966 60.000 15.21 14.61 44.43 4.34
1414 2196 2.021931 GACTACGCCCGTACGTCG 59.978 66.667 20.54 20.54 44.43 5.12
1415 2197 2.434185 ACTACGCCCGTACGTCGA 60.434 61.111 26.33 13.37 44.43 4.20
1416 2198 2.322422 CTACGCCCGTACGTCGAG 59.678 66.667 26.33 15.42 44.43 4.04
1417 2199 2.125713 TACGCCCGTACGTCGAGA 60.126 61.111 26.33 14.70 44.43 4.04
1418 2200 1.695893 CTACGCCCGTACGTCGAGAA 61.696 60.000 26.33 13.99 44.43 2.87
1419 2201 1.695893 TACGCCCGTACGTCGAGAAG 61.696 60.000 26.33 6.35 44.43 2.85
1422 2231 1.513586 CCCGTACGTCGAGAAGCAC 60.514 63.158 15.21 0.00 42.86 4.40
1471 2280 5.525454 ACCATGATATATGTCCAATGGCT 57.475 39.130 14.94 4.49 0.00 4.75
1473 2282 4.097437 CCATGATATATGTCCAATGGCTGC 59.903 45.833 6.06 0.00 0.00 5.25
1474 2283 4.370094 TGATATATGTCCAATGGCTGCA 57.630 40.909 0.50 0.00 0.00 4.41
1515 2324 2.672996 GGCGCCAAGGACATGTGT 60.673 61.111 24.80 0.00 0.00 3.72
1518 2327 1.575922 CGCCAAGGACATGTGTGTG 59.424 57.895 1.15 0.00 39.09 3.82
1609 2418 1.146358 GCGTCTATGCGAGGGTGTTC 61.146 60.000 0.00 0.00 0.00 3.18
1612 2421 2.205074 GTCTATGCGAGGGTGTTCATG 58.795 52.381 0.00 0.00 0.00 3.07
1619 2428 2.069273 CGAGGGTGTTCATGTCTTGTC 58.931 52.381 0.00 0.00 0.00 3.18
1634 2443 0.107410 TTGTCACCCAGCGTTTCTGT 60.107 50.000 0.00 0.00 41.25 3.41
1659 2475 4.402474 TCACTGTTCTGAGTTCTTGACTGA 59.598 41.667 0.00 0.00 39.19 3.41
1668 2484 5.917462 TGAGTTCTTGACTGAATCTGTTGA 58.083 37.500 0.00 0.00 39.19 3.18
1669 2485 5.987953 TGAGTTCTTGACTGAATCTGTTGAG 59.012 40.000 0.00 0.00 39.19 3.02
1693 2509 1.134670 GCAGATAACCTGACGGAAGCT 60.135 52.381 0.00 0.00 45.78 3.74
1699 2515 1.447489 CCTGACGGAAGCTCTGCTG 60.447 63.158 0.00 0.00 39.62 4.41
1740 2556 6.980577 TGGGAGATATTCACCAGGTATTTTT 58.019 36.000 0.00 0.00 0.00 1.94
1741 2557 6.833416 TGGGAGATATTCACCAGGTATTTTTG 59.167 38.462 0.00 0.00 0.00 2.44
1742 2558 6.265422 GGGAGATATTCACCAGGTATTTTTGG 59.735 42.308 0.00 0.00 40.38 3.28
1786 2602 9.770097 AGTAATCCTGTGATTATTGTACAGATG 57.230 33.333 0.00 0.00 43.47 2.90
1787 2603 9.764363 GTAATCCTGTGATTATTGTACAGATGA 57.236 33.333 0.00 0.00 43.47 2.92
1809 2634 9.932699 GATGATCAGTCTCTGACATAATTTTTG 57.067 33.333 0.09 0.00 43.63 2.44
1810 2635 8.853077 TGATCAGTCTCTGACATAATTTTTGT 57.147 30.769 1.44 0.00 43.63 2.83
1887 2712 1.966451 GGGCAACTCGGTGAACCTG 60.966 63.158 0.00 0.00 0.00 4.00
1905 2730 1.370900 GCGCTGGTTCAAGCACAAG 60.371 57.895 0.00 0.00 43.73 3.16
1933 2774 7.339212 CCAACCTCCATCATGTAAATAAACTCA 59.661 37.037 0.00 0.00 0.00 3.41
1934 2775 8.400947 CAACCTCCATCATGTAAATAAACTCAG 58.599 37.037 0.00 0.00 0.00 3.35
1937 2778 7.770433 CCTCCATCATGTAAATAAACTCAGTGA 59.230 37.037 0.00 0.00 0.00 3.41
1938 2779 9.334947 CTCCATCATGTAAATAAACTCAGTGAT 57.665 33.333 0.00 0.00 0.00 3.06
1939 2780 9.330063 TCCATCATGTAAATAAACTCAGTGATC 57.670 33.333 0.00 0.00 0.00 2.92
1940 2781 8.562892 CCATCATGTAAATAAACTCAGTGATCC 58.437 37.037 0.00 0.00 0.00 3.36
1942 2783 8.948631 TCATGTAAATAAACTCAGTGATCCTC 57.051 34.615 0.00 0.00 0.00 3.71
1943 2784 8.762645 TCATGTAAATAAACTCAGTGATCCTCT 58.237 33.333 0.00 0.00 0.00 3.69
1944 2785 9.388506 CATGTAAATAAACTCAGTGATCCTCTT 57.611 33.333 0.00 0.00 0.00 2.85
1945 2786 9.965902 ATGTAAATAAACTCAGTGATCCTCTTT 57.034 29.630 0.00 0.00 0.00 2.52
1948 2789 8.480643 AAATAAACTCAGTGATCCTCTTTACG 57.519 34.615 0.00 0.00 0.00 3.18
1954 2795 4.096311 CAGTGATCCTCTTTACGTACACG 58.904 47.826 0.00 0.00 46.33 4.49
1960 2801 3.057386 TCCTCTTTACGTACACGCAATGA 60.057 43.478 0.85 2.80 44.43 2.57
1982 2825 6.202969 TGACATGTCACAAGCAGAGCTTAAA 61.203 40.000 24.56 0.00 39.77 1.52
1984 2827 8.865327 TGACATGTCACAAGCAGAGCTTAAATT 61.865 37.037 24.56 0.00 39.77 1.82
1993 2836 4.829492 AGCAGAGCTTAAATTTTCACCTGT 59.171 37.500 0.00 0.00 33.89 4.00
1995 2838 6.490040 AGCAGAGCTTAAATTTTCACCTGTAA 59.510 34.615 0.00 0.00 33.89 2.41
1999 2869 8.734386 AGAGCTTAAATTTTCACCTGTAATCTG 58.266 33.333 0.00 0.00 0.00 2.90
2125 2995 3.077229 TGCAAACCAAATGAACTGTCG 57.923 42.857 0.00 0.00 0.00 4.35
2130 3000 2.229792 ACCAAATGAACTGTCGCACAT 58.770 42.857 0.00 0.00 0.00 3.21
2147 3023 4.313522 CACATTTACAGACGTGCTCTTC 57.686 45.455 0.00 0.00 0.00 2.87
2148 3024 3.740832 CACATTTACAGACGTGCTCTTCA 59.259 43.478 0.00 0.00 0.00 3.02
2149 3025 4.211164 CACATTTACAGACGTGCTCTTCAA 59.789 41.667 0.00 0.00 0.00 2.69
2150 3026 4.449068 ACATTTACAGACGTGCTCTTCAAG 59.551 41.667 0.00 0.00 0.00 3.02
2151 3027 4.316205 TTTACAGACGTGCTCTTCAAGA 57.684 40.909 0.00 0.00 0.00 3.02
2152 3028 2.141535 ACAGACGTGCTCTTCAAGAC 57.858 50.000 0.00 0.00 0.00 3.01
2153 3029 1.269831 ACAGACGTGCTCTTCAAGACC 60.270 52.381 0.00 0.00 0.00 3.85
2154 3030 1.040646 AGACGTGCTCTTCAAGACCA 58.959 50.000 0.00 0.00 0.00 4.02
2155 3031 1.000283 AGACGTGCTCTTCAAGACCAG 60.000 52.381 0.00 0.00 0.00 4.00
2156 3032 0.034059 ACGTGCTCTTCAAGACCAGG 59.966 55.000 1.56 1.56 0.00 4.45
2157 3033 0.318441 CGTGCTCTTCAAGACCAGGA 59.682 55.000 0.00 0.00 0.00 3.86
2158 3034 1.270305 CGTGCTCTTCAAGACCAGGAA 60.270 52.381 0.00 0.00 0.00 3.36
2159 3035 2.147150 GTGCTCTTCAAGACCAGGAAC 58.853 52.381 0.00 0.00 0.00 3.62
2160 3036 1.768275 TGCTCTTCAAGACCAGGAACA 59.232 47.619 0.00 0.00 0.00 3.18
2161 3037 2.373169 TGCTCTTCAAGACCAGGAACAT 59.627 45.455 0.00 0.00 0.00 2.71
2162 3038 3.181440 TGCTCTTCAAGACCAGGAACATT 60.181 43.478 0.00 0.00 0.00 2.71
2163 3039 3.823304 GCTCTTCAAGACCAGGAACATTT 59.177 43.478 0.00 0.00 0.00 2.32
2164 3040 4.279420 GCTCTTCAAGACCAGGAACATTTT 59.721 41.667 0.00 0.00 0.00 1.82
2165 3041 5.563671 GCTCTTCAAGACCAGGAACATTTTC 60.564 44.000 0.00 0.00 0.00 2.29
2166 3042 5.694995 TCTTCAAGACCAGGAACATTTTCT 58.305 37.500 0.00 0.00 31.71 2.52
2167 3043 6.129179 TCTTCAAGACCAGGAACATTTTCTT 58.871 36.000 0.00 0.00 31.71 2.52
2168 3044 6.607198 TCTTCAAGACCAGGAACATTTTCTTT 59.393 34.615 0.00 0.00 31.71 2.52
2169 3045 6.790232 TCAAGACCAGGAACATTTTCTTTT 57.210 33.333 0.00 0.00 31.71 2.27
2170 3046 7.181569 TCAAGACCAGGAACATTTTCTTTTT 57.818 32.000 0.00 0.00 31.71 1.94
2171 3047 7.264947 TCAAGACCAGGAACATTTTCTTTTTC 58.735 34.615 0.00 0.00 31.71 2.29
2172 3048 6.790232 AGACCAGGAACATTTTCTTTTTCA 57.210 33.333 0.00 0.00 31.71 2.69
2173 3049 7.181569 AGACCAGGAACATTTTCTTTTTCAA 57.818 32.000 0.00 0.00 31.71 2.69
2174 3050 7.795047 AGACCAGGAACATTTTCTTTTTCAAT 58.205 30.769 0.00 0.00 31.71 2.57
2175 3051 8.923270 AGACCAGGAACATTTTCTTTTTCAATA 58.077 29.630 0.00 0.00 31.71 1.90
2176 3052 9.710900 GACCAGGAACATTTTCTTTTTCAATAT 57.289 29.630 0.00 0.00 31.71 1.28
2191 3067 8.713708 TTTTTCAATATACCAAGACCAGGAAA 57.286 30.769 0.00 0.00 0.00 3.13
2204 3080 6.581171 AGACCAGGAAAATGTCTGAAATTC 57.419 37.500 0.00 0.00 37.92 2.17
2219 3095 7.468141 TCTGAAATTCACAGACTAGCTTAGA 57.532 36.000 10.07 0.00 39.10 2.10
2220 3096 8.072321 TCTGAAATTCACAGACTAGCTTAGAT 57.928 34.615 10.07 0.00 39.10 1.98
2221 3097 9.190317 TCTGAAATTCACAGACTAGCTTAGATA 57.810 33.333 10.07 0.00 39.10 1.98
2222 3098 9.979578 CTGAAATTCACAGACTAGCTTAGATAT 57.020 33.333 0.00 0.00 37.54 1.63
2226 3102 9.539825 AATTCACAGACTAGCTTAGATATTGTG 57.460 33.333 0.00 9.22 0.00 3.33
2261 3137 0.117140 TCTTCTTCCTCCAGGGCTCA 59.883 55.000 0.00 0.00 35.41 4.26
2401 3277 1.119574 ACACTGTCCGGTAAGCCACT 61.120 55.000 0.00 0.00 34.09 4.00
2402 3278 0.034896 CACTGTCCGGTAAGCCACTT 59.965 55.000 0.00 0.00 34.09 3.16
2405 3282 1.078637 GTCCGGTAAGCCACTTCCC 60.079 63.158 0.00 0.00 34.09 3.97
2416 3298 3.322466 ACTTCCCGGCTCCACCTG 61.322 66.667 0.00 0.00 35.61 4.00
2444 3327 1.411246 GTTCATCATGCCATGCCATGT 59.589 47.619 15.67 1.81 42.44 3.21
2450 3333 1.410882 CATGCCATGCCATGTCATTCA 59.589 47.619 8.49 0.00 38.19 2.57
2457 3340 3.369242 TGCCATGTCATTCATCCTGAA 57.631 42.857 0.00 0.00 41.09 3.02
2470 3355 1.372582 TCCTGAATGATGCTTCGTGC 58.627 50.000 0.00 0.00 43.25 5.34
2471 3356 0.027194 CCTGAATGATGCTTCGTGCG 59.973 55.000 0.00 0.00 46.63 5.34
2491 3376 0.179124 CTGCAGAGGACTACTTCGGC 60.179 60.000 8.42 0.00 41.73 5.54
2585 3470 2.358737 GAGACCACAAGGCCCACG 60.359 66.667 0.00 0.00 39.06 4.94
2705 3602 1.079503 GAAGACTTGGGCACGATGAC 58.920 55.000 0.00 0.00 0.00 3.06
2721 3618 3.554544 CGATGACGCCTACTAGGAGACTA 60.555 52.174 12.47 0.00 43.67 2.59
2722 3619 3.191078 TGACGCCTACTAGGAGACTAC 57.809 52.381 12.47 2.67 43.67 2.73
2723 3620 2.502947 TGACGCCTACTAGGAGACTACA 59.497 50.000 12.47 4.82 43.67 2.74
2815 3715 3.674955 GCGTGTACTACATGTCATGTCCA 60.675 47.826 21.65 11.54 43.67 4.02
2816 3716 4.490743 CGTGTACTACATGTCATGTCCAA 58.509 43.478 21.65 4.30 43.67 3.53
2817 3717 4.926832 CGTGTACTACATGTCATGTCCAAA 59.073 41.667 21.65 3.93 43.67 3.28
2818 3718 5.062183 CGTGTACTACATGTCATGTCCAAAG 59.938 44.000 21.65 15.37 43.67 2.77
2819 3719 6.163476 GTGTACTACATGTCATGTCCAAAGA 58.837 40.000 21.65 2.83 43.67 2.52
2820 3720 6.818644 GTGTACTACATGTCATGTCCAAAGAT 59.181 38.462 21.65 7.49 43.67 2.40
2821 3721 6.818142 TGTACTACATGTCATGTCCAAAGATG 59.182 38.462 21.65 6.26 43.67 2.90
2959 3859 1.911057 AGATCGTGTCCACACTCTGA 58.089 50.000 8.19 0.00 44.34 3.27
2963 3863 1.478916 TCGTGTCCACACTCTGAACAA 59.521 47.619 8.19 0.00 44.34 2.83
3032 3985 2.496111 TGGTGTTTGTATGTTCGTCCC 58.504 47.619 0.00 0.00 0.00 4.46
3035 3988 3.058501 GGTGTTTGTATGTTCGTCCCAAG 60.059 47.826 0.00 0.00 0.00 3.61
3045 3998 0.834261 TCGTCCCAAGACCATGTCCA 60.834 55.000 0.00 0.00 40.12 4.02
3054 4007 3.973206 AGACCATGTCCATCGTTAACA 57.027 42.857 6.39 0.00 32.18 2.41
3290 4250 3.365868 GCAACGCATGGTCAATTAGTCAA 60.366 43.478 0.00 0.00 0.00 3.18
3292 4252 4.621068 ACGCATGGTCAATTAGTCAATG 57.379 40.909 0.00 0.00 0.00 2.82
3371 4348 3.213249 AGACCGCTTTGTACTTACTCG 57.787 47.619 0.00 0.00 0.00 4.18
3375 4352 3.057315 ACCGCTTTGTACTTACTCGCTTA 60.057 43.478 0.00 0.00 0.00 3.09
3376 4353 3.302699 CCGCTTTGTACTTACTCGCTTAC 59.697 47.826 0.00 0.00 0.00 2.34
3377 4354 4.164294 CGCTTTGTACTTACTCGCTTACT 58.836 43.478 0.00 0.00 0.00 2.24
3378 4355 4.262510 CGCTTTGTACTTACTCGCTTACTC 59.737 45.833 0.00 0.00 0.00 2.59
3379 4356 4.562000 GCTTTGTACTTACTCGCTTACTCC 59.438 45.833 0.00 0.00 0.00 3.85
3380 4357 4.708726 TTGTACTTACTCGCTTACTCCC 57.291 45.455 0.00 0.00 0.00 4.30
3381 4358 3.960571 TGTACTTACTCGCTTACTCCCT 58.039 45.455 0.00 0.00 0.00 4.20
3382 4359 4.338879 TGTACTTACTCGCTTACTCCCTT 58.661 43.478 0.00 0.00 0.00 3.95
3383 4360 4.768968 TGTACTTACTCGCTTACTCCCTTT 59.231 41.667 0.00 0.00 0.00 3.11
3384 4361 4.886496 ACTTACTCGCTTACTCCCTTTT 57.114 40.909 0.00 0.00 0.00 2.27
3500 4477 5.590259 GGTGTGATAATCTTGTAGGCAATGT 59.410 40.000 0.00 0.00 33.65 2.71
3585 4563 1.336125 GGAACGGAGGGAGTACATACG 59.664 57.143 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.006888 CAGGTGACGAACACTTGTTGT 58.993 47.619 16.21 0.00 46.71 3.32
25 26 3.307691 CCCTCAACATTAGCTGAACTCCA 60.308 47.826 0.00 0.00 0.00 3.86
30 31 2.806945 CCCCCTCAACATTAGCTGAA 57.193 50.000 0.00 0.00 0.00 3.02
46 47 4.225703 GCATTGCCGCATTCCCCC 62.226 66.667 0.00 0.00 0.00 5.40
47 48 2.314415 ATTGCATTGCCGCATTCCCC 62.314 55.000 6.12 0.00 42.62 4.81
49 50 0.460635 ACATTGCATTGCCGCATTCC 60.461 50.000 6.12 0.00 42.62 3.01
50 51 0.648441 CACATTGCATTGCCGCATTC 59.352 50.000 6.12 0.00 42.62 2.67
51 52 0.741574 CCACATTGCATTGCCGCATT 60.742 50.000 6.12 0.00 42.62 3.56
117 119 1.440850 CGTCTTCGCCAACGTCGTA 60.441 57.895 0.00 0.00 41.18 3.43
180 398 2.048503 CACTTCGGTGGGTCGACC 60.049 66.667 27.04 27.04 41.88 4.79
230 448 1.834856 TTGCCTGCTGCTACTGCTCT 61.835 55.000 0.00 0.00 42.00 4.09
237 461 2.356278 CCCCTTTGCCTGCTGCTA 59.644 61.111 0.00 0.00 42.00 3.49
240 464 1.379044 CTACCCCCTTTGCCTGCTG 60.379 63.158 0.00 0.00 0.00 4.41
241 465 1.541368 TCTACCCCCTTTGCCTGCT 60.541 57.895 0.00 0.00 0.00 4.24
242 466 1.077429 CTCTACCCCCTTTGCCTGC 60.077 63.158 0.00 0.00 0.00 4.85
243 467 0.543749 CTCTCTACCCCCTTTGCCTG 59.456 60.000 0.00 0.00 0.00 4.85
244 468 0.417841 TCTCTCTACCCCCTTTGCCT 59.582 55.000 0.00 0.00 0.00 4.75
247 471 3.295973 CTCTCTCTCTCTACCCCCTTTG 58.704 54.545 0.00 0.00 0.00 2.77
248 472 2.930405 ACTCTCTCTCTCTACCCCCTTT 59.070 50.000 0.00 0.00 0.00 3.11
249 473 2.580232 ACTCTCTCTCTCTACCCCCTT 58.420 52.381 0.00 0.00 0.00 3.95
250 474 2.296943 ACTCTCTCTCTCTACCCCCT 57.703 55.000 0.00 0.00 0.00 4.79
251 475 3.812882 GCATACTCTCTCTCTCTACCCCC 60.813 56.522 0.00 0.00 0.00 5.40
252 476 3.418047 GCATACTCTCTCTCTCTACCCC 58.582 54.545 0.00 0.00 0.00 4.95
253 477 3.071479 CGCATACTCTCTCTCTCTACCC 58.929 54.545 0.00 0.00 0.00 3.69
254 478 3.071479 CCGCATACTCTCTCTCTCTACC 58.929 54.545 0.00 0.00 0.00 3.18
255 479 3.994392 CTCCGCATACTCTCTCTCTCTAC 59.006 52.174 0.00 0.00 0.00 2.59
256 480 3.644265 ACTCCGCATACTCTCTCTCTCTA 59.356 47.826 0.00 0.00 0.00 2.43
257 481 2.438021 ACTCCGCATACTCTCTCTCTCT 59.562 50.000 0.00 0.00 0.00 3.10
258 482 2.548057 CACTCCGCATACTCTCTCTCTC 59.452 54.545 0.00 0.00 0.00 3.20
259 483 2.571212 CACTCCGCATACTCTCTCTCT 58.429 52.381 0.00 0.00 0.00 3.10
262 495 1.606668 CTCCACTCCGCATACTCTCTC 59.393 57.143 0.00 0.00 0.00 3.20
268 501 0.460284 CACACCTCCACTCCGCATAC 60.460 60.000 0.00 0.00 0.00 2.39
269 502 0.613572 TCACACCTCCACTCCGCATA 60.614 55.000 0.00 0.00 0.00 3.14
270 503 1.892819 CTCACACCTCCACTCCGCAT 61.893 60.000 0.00 0.00 0.00 4.73
271 504 2.523168 TCACACCTCCACTCCGCA 60.523 61.111 0.00 0.00 0.00 5.69
276 509 0.192566 TAACCCCTCACACCTCCACT 59.807 55.000 0.00 0.00 0.00 4.00
278 511 1.189524 CGTAACCCCTCACACCTCCA 61.190 60.000 0.00 0.00 0.00 3.86
285 518 2.666812 CCCCACGTAACCCCTCAC 59.333 66.667 0.00 0.00 0.00 3.51
329 562 3.881019 AACTCCTCCCGCGTCTCCA 62.881 63.158 4.92 0.00 0.00 3.86
558 801 5.828299 AAACTTCAGTTTGACATCCGAAA 57.172 34.783 4.08 0.00 45.55 3.46
608 852 2.774774 GAGAGACAAAGCGCTGCG 59.225 61.111 19.17 19.17 0.00 5.18
613 857 2.383527 GGGTGCGAGAGACAAAGCG 61.384 63.158 0.00 0.00 0.00 4.68
614 858 1.294659 CTGGGTGCGAGAGACAAAGC 61.295 60.000 0.00 0.00 0.00 3.51
617 861 3.059982 CCTGGGTGCGAGAGACAA 58.940 61.111 0.00 0.00 0.00 3.18
618 862 3.695606 GCCTGGGTGCGAGAGACA 61.696 66.667 0.00 0.00 0.00 3.41
619 863 4.459089 GGCCTGGGTGCGAGAGAC 62.459 72.222 0.00 0.00 0.00 3.36
673 920 4.512914 GCTGGGCCTGGGTGGATC 62.513 72.222 12.70 0.00 38.35 3.36
728 1380 2.093972 TGCTGTTTTTGCGTACGTTC 57.906 45.000 17.90 1.08 0.00 3.95
735 1387 0.248458 ACGAGGTTGCTGTTTTTGCG 60.248 50.000 0.00 0.00 0.00 4.85
742 1394 0.249911 GGAACTGACGAGGTTGCTGT 60.250 55.000 0.00 0.00 33.35 4.40
760 1412 0.463833 GCTTCCCCTGTTATCGTGGG 60.464 60.000 0.00 0.00 40.59 4.61
820 1472 2.093921 TCCATGAATTACGTGCTCGGAA 60.094 45.455 8.47 8.47 44.31 4.30
821 1473 1.478916 TCCATGAATTACGTGCTCGGA 59.521 47.619 13.32 0.00 41.85 4.55
822 1474 1.860950 CTCCATGAATTACGTGCTCGG 59.139 52.381 13.32 0.00 41.85 4.63
823 1475 1.258982 GCTCCATGAATTACGTGCTCG 59.741 52.381 6.63 6.63 43.34 5.03
824 1476 2.555199 AGCTCCATGAATTACGTGCTC 58.445 47.619 0.00 0.00 34.47 4.26
825 1477 2.698855 AGCTCCATGAATTACGTGCT 57.301 45.000 0.00 0.00 34.47 4.40
826 1478 3.303395 GCTTAGCTCCATGAATTACGTGC 60.303 47.826 0.00 0.00 34.47 5.34
827 1479 3.060272 CGCTTAGCTCCATGAATTACGTG 60.060 47.826 1.76 0.00 35.47 4.49
828 1480 3.123804 CGCTTAGCTCCATGAATTACGT 58.876 45.455 1.76 0.00 0.00 3.57
829 1481 3.381045 TCGCTTAGCTCCATGAATTACG 58.619 45.455 1.76 0.00 0.00 3.18
830 1482 4.212214 CCTTCGCTTAGCTCCATGAATTAC 59.788 45.833 1.76 0.00 0.00 1.89
831 1483 4.100963 TCCTTCGCTTAGCTCCATGAATTA 59.899 41.667 1.76 0.00 0.00 1.40
832 1484 3.118261 TCCTTCGCTTAGCTCCATGAATT 60.118 43.478 1.76 0.00 0.00 2.17
863 1548 0.731514 CTTTGAGTGCAAGCATGGCG 60.732 55.000 0.00 0.00 38.51 5.69
871 1556 1.333619 GCGAGGTTTCTTTGAGTGCAA 59.666 47.619 0.00 0.00 0.00 4.08
922 1607 5.481824 AGATTCAGAGGACATAATGGCGATA 59.518 40.000 0.00 0.00 0.00 2.92
931 1616 6.041409 GGTTGATGAGAGATTCAGAGGACATA 59.959 42.308 0.00 0.00 39.68 2.29
932 1617 5.163322 GGTTGATGAGAGATTCAGAGGACAT 60.163 44.000 0.00 0.00 39.68 3.06
948 1633 1.059098 ACTCTGCACCTGGTTGATGA 58.941 50.000 0.00 0.00 0.00 2.92
953 1638 1.072331 CAAGGTACTCTGCACCTGGTT 59.928 52.381 0.00 0.00 45.90 3.67
955 1640 0.976641 TCAAGGTACTCTGCACCTGG 59.023 55.000 0.00 0.00 45.90 4.45
961 1646 1.071605 CGTTGCTCAAGGTACTCTGC 58.928 55.000 0.00 0.00 38.49 4.26
962 1647 2.229062 TCTCGTTGCTCAAGGTACTCTG 59.771 50.000 0.00 0.00 38.49 3.35
963 1648 2.229302 GTCTCGTTGCTCAAGGTACTCT 59.771 50.000 0.00 0.00 38.49 3.24
968 1663 1.272769 GTAGGTCTCGTTGCTCAAGGT 59.727 52.381 2.79 0.00 0.00 3.50
971 1666 1.334160 TGGTAGGTCTCGTTGCTCAA 58.666 50.000 0.00 0.00 0.00 3.02
978 1673 2.762535 CCAATGTTGGTAGGTCTCGT 57.237 50.000 3.58 0.00 43.43 4.18
989 1684 0.737019 GGACGCCATTGCCAATGTTG 60.737 55.000 15.83 10.03 37.18 3.33
990 1685 0.899717 AGGACGCCATTGCCAATGTT 60.900 50.000 15.83 0.28 37.18 2.71
1130 1825 9.602568 TGTTACAGTAAACAGAATGACAAGTTA 57.397 29.630 0.00 0.00 39.69 2.24
1131 1826 8.500753 TGTTACAGTAAACAGAATGACAAGTT 57.499 30.769 0.00 0.00 39.69 2.66
1132 1827 8.677148 ATGTTACAGTAAACAGAATGACAAGT 57.323 30.769 0.00 0.00 42.33 3.16
1133 1828 8.993121 AGATGTTACAGTAAACAGAATGACAAG 58.007 33.333 0.00 0.00 42.33 3.16
1134 1829 8.902540 AGATGTTACAGTAAACAGAATGACAA 57.097 30.769 0.00 0.00 42.33 3.18
1135 1830 8.902540 AAGATGTTACAGTAAACAGAATGACA 57.097 30.769 0.00 0.00 42.33 3.58
1136 1831 9.599322 CAAAGATGTTACAGTAAACAGAATGAC 57.401 33.333 0.00 0.00 42.33 3.06
1137 1832 8.783093 CCAAAGATGTTACAGTAAACAGAATGA 58.217 33.333 0.00 0.00 42.33 2.57
1138 1833 7.538678 GCCAAAGATGTTACAGTAAACAGAATG 59.461 37.037 0.00 0.00 42.33 2.67
1139 1834 7.230510 TGCCAAAGATGTTACAGTAAACAGAAT 59.769 33.333 0.00 0.00 42.33 2.40
1140 1835 6.544197 TGCCAAAGATGTTACAGTAAACAGAA 59.456 34.615 0.00 0.00 42.33 3.02
1141 1836 6.058833 TGCCAAAGATGTTACAGTAAACAGA 58.941 36.000 0.00 0.00 42.33 3.41
1142 1837 6.312399 TGCCAAAGATGTTACAGTAAACAG 57.688 37.500 0.00 0.00 42.33 3.16
1143 1838 6.072175 GGATGCCAAAGATGTTACAGTAAACA 60.072 38.462 0.00 0.00 43.16 2.83
1144 1839 6.151144 AGGATGCCAAAGATGTTACAGTAAAC 59.849 38.462 0.00 0.00 0.00 2.01
1145 1840 6.150976 CAGGATGCCAAAGATGTTACAGTAAA 59.849 38.462 0.00 0.00 0.00 2.01
1146 1841 5.647658 CAGGATGCCAAAGATGTTACAGTAA 59.352 40.000 0.00 0.00 0.00 2.24
1147 1842 5.185454 CAGGATGCCAAAGATGTTACAGTA 58.815 41.667 0.00 0.00 0.00 2.74
1148 1843 4.012374 CAGGATGCCAAAGATGTTACAGT 58.988 43.478 0.00 0.00 0.00 3.55
1149 1844 4.627611 CAGGATGCCAAAGATGTTACAG 57.372 45.455 0.00 0.00 0.00 2.74
1164 1859 0.729116 GGTGTCGACAATGCAGGATG 59.271 55.000 21.95 0.00 40.87 3.51
1165 1860 0.324614 TGGTGTCGACAATGCAGGAT 59.675 50.000 21.95 0.00 0.00 3.24
1166 1861 0.602638 GTGGTGTCGACAATGCAGGA 60.603 55.000 21.95 0.00 0.00 3.86
1167 1862 0.603707 AGTGGTGTCGACAATGCAGG 60.604 55.000 21.95 0.00 0.00 4.85
1168 1863 0.514255 CAGTGGTGTCGACAATGCAG 59.486 55.000 21.95 6.99 0.00 4.41
1169 1864 0.105778 TCAGTGGTGTCGACAATGCA 59.894 50.000 21.95 0.00 34.25 3.96
1170 1865 1.225855 TTCAGTGGTGTCGACAATGC 58.774 50.000 21.95 12.72 34.25 3.56
1171 1866 2.032030 GGTTTCAGTGGTGTCGACAATG 60.032 50.000 21.95 16.16 35.44 2.82
1172 1867 2.158813 AGGTTTCAGTGGTGTCGACAAT 60.159 45.455 21.95 3.79 0.00 2.71
1173 1868 1.208535 AGGTTTCAGTGGTGTCGACAA 59.791 47.619 21.95 2.04 0.00 3.18
1174 1869 0.828022 AGGTTTCAGTGGTGTCGACA 59.172 50.000 15.76 15.76 0.00 4.35
1175 1870 1.949465 AAGGTTTCAGTGGTGTCGAC 58.051 50.000 9.11 9.11 0.00 4.20
1176 1871 3.823281 TTAAGGTTTCAGTGGTGTCGA 57.177 42.857 0.00 0.00 0.00 4.20
1177 1872 4.320202 CCATTTAAGGTTTCAGTGGTGTCG 60.320 45.833 0.00 0.00 0.00 4.35
1178 1873 4.022329 CCCATTTAAGGTTTCAGTGGTGTC 60.022 45.833 0.00 0.00 0.00 3.67
1179 1874 3.895041 CCCATTTAAGGTTTCAGTGGTGT 59.105 43.478 0.00 0.00 0.00 4.16
1180 1875 3.306019 GCCCATTTAAGGTTTCAGTGGTG 60.306 47.826 0.00 0.00 0.00 4.17
1181 1876 2.897326 GCCCATTTAAGGTTTCAGTGGT 59.103 45.455 0.00 0.00 0.00 4.16
1182 1877 2.094752 CGCCCATTTAAGGTTTCAGTGG 60.095 50.000 0.00 0.00 0.00 4.00
1183 1878 2.817258 TCGCCCATTTAAGGTTTCAGTG 59.183 45.455 0.00 0.00 0.00 3.66
1184 1879 3.149005 TCGCCCATTTAAGGTTTCAGT 57.851 42.857 0.00 0.00 0.00 3.41
1185 1880 4.157656 TCAATCGCCCATTTAAGGTTTCAG 59.842 41.667 0.00 0.00 0.00 3.02
1186 1881 4.082845 TCAATCGCCCATTTAAGGTTTCA 58.917 39.130 0.00 0.00 0.00 2.69
1187 1882 4.712122 TCAATCGCCCATTTAAGGTTTC 57.288 40.909 0.00 0.00 0.00 2.78
1188 1883 5.046663 ACAATCAATCGCCCATTTAAGGTTT 60.047 36.000 0.00 0.00 0.00 3.27
1189 1884 4.466015 ACAATCAATCGCCCATTTAAGGTT 59.534 37.500 0.00 0.00 0.00 3.50
1190 1885 4.023291 ACAATCAATCGCCCATTTAAGGT 58.977 39.130 0.00 0.00 0.00 3.50
1191 1886 4.142182 ACACAATCAATCGCCCATTTAAGG 60.142 41.667 0.00 0.00 0.00 2.69
1192 1887 4.997565 ACACAATCAATCGCCCATTTAAG 58.002 39.130 0.00 0.00 0.00 1.85
1193 1888 5.167121 CAACACAATCAATCGCCCATTTAA 58.833 37.500 0.00 0.00 0.00 1.52
1194 1889 4.219507 ACAACACAATCAATCGCCCATTTA 59.780 37.500 0.00 0.00 0.00 1.40
1195 1890 3.006752 ACAACACAATCAATCGCCCATTT 59.993 39.130 0.00 0.00 0.00 2.32
1196 1891 2.562298 ACAACACAATCAATCGCCCATT 59.438 40.909 0.00 0.00 0.00 3.16
1197 1892 2.164219 GACAACACAATCAATCGCCCAT 59.836 45.455 0.00 0.00 0.00 4.00
1198 1893 1.539388 GACAACACAATCAATCGCCCA 59.461 47.619 0.00 0.00 0.00 5.36
1199 1894 1.465689 CGACAACACAATCAATCGCCC 60.466 52.381 0.00 0.00 0.00 6.13
1200 1895 1.196808 ACGACAACACAATCAATCGCC 59.803 47.619 0.00 0.00 32.95 5.54
1201 1896 2.233355 CACGACAACACAATCAATCGC 58.767 47.619 0.00 0.00 32.95 4.58
1202 1897 2.838275 CCACGACAACACAATCAATCG 58.162 47.619 0.00 0.00 35.74 3.34
1203 1898 2.031245 TGCCACGACAACACAATCAATC 60.031 45.455 0.00 0.00 0.00 2.67
1204 1899 1.952990 TGCCACGACAACACAATCAAT 59.047 42.857 0.00 0.00 0.00 2.57
1205 1900 1.333308 CTGCCACGACAACACAATCAA 59.667 47.619 0.00 0.00 0.00 2.57
1206 1901 0.943673 CTGCCACGACAACACAATCA 59.056 50.000 0.00 0.00 0.00 2.57
1207 1902 0.238289 CCTGCCACGACAACACAATC 59.762 55.000 0.00 0.00 0.00 2.67
1208 1903 0.179032 TCCTGCCACGACAACACAAT 60.179 50.000 0.00 0.00 0.00 2.71
1209 1904 0.179032 ATCCTGCCACGACAACACAA 60.179 50.000 0.00 0.00 0.00 3.33
1210 1905 0.602638 GATCCTGCCACGACAACACA 60.603 55.000 0.00 0.00 0.00 3.72
1211 1906 0.320771 AGATCCTGCCACGACAACAC 60.321 55.000 0.00 0.00 0.00 3.32
1212 1907 0.320683 CAGATCCTGCCACGACAACA 60.321 55.000 0.00 0.00 0.00 3.33
1213 1908 2.460330 CAGATCCTGCCACGACAAC 58.540 57.895 0.00 0.00 0.00 3.32
1406 2188 0.701303 GTTGTGCTTCTCGACGTACG 59.299 55.000 15.01 15.01 44.09 3.67
1416 2198 7.467811 TCAGAAATTCAGAAGAAGTTGTGCTTC 60.468 37.037 9.67 0.00 46.36 3.86
1417 2199 6.319658 TCAGAAATTCAGAAGAAGTTGTGCTT 59.680 34.615 9.67 0.00 46.36 3.91
1418 2200 5.824624 TCAGAAATTCAGAAGAAGTTGTGCT 59.175 36.000 9.67 0.00 46.36 4.40
1419 2201 6.064846 TCAGAAATTCAGAAGAAGTTGTGC 57.935 37.500 9.67 0.00 46.36 4.57
1446 2255 6.783977 AGCCATTGGACATATATCATGGTTTT 59.216 34.615 6.95 0.00 0.00 2.43
1448 2257 5.713389 CAGCCATTGGACATATATCATGGTT 59.287 40.000 6.95 0.00 0.00 3.67
1450 2259 4.097437 GCAGCCATTGGACATATATCATGG 59.903 45.833 6.95 0.00 0.00 3.66
1451 2260 4.703093 TGCAGCCATTGGACATATATCATG 59.297 41.667 6.95 0.00 0.00 3.07
1463 2272 3.072468 CCCCTGTGCAGCCATTGG 61.072 66.667 0.00 0.00 0.00 3.16
1464 2273 2.036098 TCCCCTGTGCAGCCATTG 59.964 61.111 0.00 0.00 0.00 2.82
1465 2274 2.036256 GTCCCCTGTGCAGCCATT 59.964 61.111 0.00 0.00 0.00 3.16
1466 2275 2.937689 AGTCCCCTGTGCAGCCAT 60.938 61.111 0.00 0.00 0.00 4.40
1467 2276 3.957586 CAGTCCCCTGTGCAGCCA 61.958 66.667 0.00 0.00 33.80 4.75
1471 2280 3.259314 ATGGCAGTCCCCTGTGCA 61.259 61.111 0.00 0.00 41.75 4.57
1473 2282 1.377725 GTCATGGCAGTCCCCTGTG 60.378 63.158 0.00 0.00 41.02 3.66
1474 2283 2.606587 GGTCATGGCAGTCCCCTGT 61.607 63.158 0.00 0.00 41.02 4.00
1609 2418 0.603707 ACGCTGGGTGACAAGACATG 60.604 55.000 0.00 0.00 0.00 3.21
1612 2421 0.586802 GAAACGCTGGGTGACAAGAC 59.413 55.000 0.00 0.00 0.00 3.01
1634 2443 6.265422 TCAGTCAAGAACTCAGAACAGTGATA 59.735 38.462 0.00 0.00 35.45 2.15
1659 2475 6.318144 CAGGTTATCTGCATTCTCAACAGATT 59.682 38.462 9.75 0.00 46.38 2.40
1668 2484 2.766263 TCCGTCAGGTTATCTGCATTCT 59.234 45.455 0.00 0.00 43.06 2.40
1669 2485 3.179443 TCCGTCAGGTTATCTGCATTC 57.821 47.619 0.00 0.00 43.06 2.67
1693 2509 1.123077 AGTGTGACAGGAACAGCAGA 58.877 50.000 0.00 0.00 0.00 4.26
1699 2515 2.154462 CCCATGAAGTGTGACAGGAAC 58.846 52.381 0.00 0.00 0.00 3.62
1785 2601 8.853077 ACAAAAATTATGTCAGAGACTGATCA 57.147 30.769 4.79 0.00 42.73 2.92
1809 2634 7.138736 GCACATACATACCATGGACAAAATAC 58.861 38.462 21.47 0.00 33.60 1.89
1810 2635 6.830838 TGCACATACATACCATGGACAAAATA 59.169 34.615 21.47 0.00 33.60 1.40
1905 2730 7.339466 AGTTTATTTACATGATGGAGGTTGGAC 59.661 37.037 0.00 0.00 0.00 4.02
1933 2774 3.427233 GCGTGTACGTAAAGAGGATCACT 60.427 47.826 0.00 0.00 42.22 3.41
1934 2775 2.850647 GCGTGTACGTAAAGAGGATCAC 59.149 50.000 0.00 0.00 42.22 3.06
1937 2778 3.581024 TTGCGTGTACGTAAAGAGGAT 57.419 42.857 5.49 0.00 40.73 3.24
1938 2779 3.057386 TCATTGCGTGTACGTAAAGAGGA 60.057 43.478 11.61 5.44 46.03 3.71
1939 2780 3.060363 GTCATTGCGTGTACGTAAAGAGG 59.940 47.826 11.61 3.46 46.03 3.69
1940 2781 3.671459 TGTCATTGCGTGTACGTAAAGAG 59.329 43.478 11.61 5.89 46.03 2.85
1942 2783 4.143200 ACATGTCATTGCGTGTACGTAAAG 60.143 41.667 11.61 7.91 46.03 1.85
1943 2784 3.741856 ACATGTCATTGCGTGTACGTAAA 59.258 39.130 11.61 4.86 46.03 2.01
1944 2785 3.318886 ACATGTCATTGCGTGTACGTAA 58.681 40.909 10.14 10.14 46.85 3.18
1945 2786 2.918600 GACATGTCATTGCGTGTACGTA 59.081 45.455 21.07 0.00 38.57 3.57
1946 2787 1.724623 GACATGTCATTGCGTGTACGT 59.275 47.619 21.07 0.00 38.57 3.57
1947 2788 1.724082 TGACATGTCATTGCGTGTACG 59.276 47.619 24.56 0.00 38.57 3.67
1948 2789 2.478514 TGTGACATGTCATTGCGTGTAC 59.521 45.455 30.10 14.85 42.18 2.90
1954 2795 2.227149 TCTGCTTGTGACATGTCATTGC 59.773 45.455 30.10 28.87 42.18 3.56
1993 2836 2.705658 CCTGTCCCATACCTGCAGATTA 59.294 50.000 17.39 6.37 0.00 1.75
1995 2838 1.135094 CCTGTCCCATACCTGCAGAT 58.865 55.000 17.39 0.00 0.00 2.90
1999 2869 0.691078 TCTCCCTGTCCCATACCTGC 60.691 60.000 0.00 0.00 0.00 4.85
2049 2919 3.944250 AAGGCGGCCATGTCCTTGG 62.944 63.158 23.09 0.00 38.66 3.61
2130 3000 4.049186 GTCTTGAAGAGCACGTCTGTAAA 58.951 43.478 0.00 0.00 34.84 2.01
2147 3023 7.041107 TGAAAAAGAAAATGTTCCTGGTCTTG 58.959 34.615 0.00 0.00 33.92 3.02
2148 3024 7.181569 TGAAAAAGAAAATGTTCCTGGTCTT 57.818 32.000 0.00 0.00 33.92 3.01
2149 3025 6.790232 TGAAAAAGAAAATGTTCCTGGTCT 57.210 33.333 0.00 0.00 33.92 3.85
2150 3026 9.710900 ATATTGAAAAAGAAAATGTTCCTGGTC 57.289 29.630 0.00 0.00 33.92 4.02
2162 3038 8.802267 CCTGGTCTTGGTATATTGAAAAAGAAA 58.198 33.333 0.00 0.00 0.00 2.52
2163 3039 8.167392 TCCTGGTCTTGGTATATTGAAAAAGAA 58.833 33.333 0.00 0.00 0.00 2.52
2164 3040 7.695055 TCCTGGTCTTGGTATATTGAAAAAGA 58.305 34.615 0.00 0.00 0.00 2.52
2165 3041 7.938140 TCCTGGTCTTGGTATATTGAAAAAG 57.062 36.000 0.00 0.00 0.00 2.27
2166 3042 8.713708 TTTCCTGGTCTTGGTATATTGAAAAA 57.286 30.769 0.00 0.00 0.00 1.94
2167 3043 8.713708 TTTTCCTGGTCTTGGTATATTGAAAA 57.286 30.769 0.00 0.00 0.00 2.29
2168 3044 8.748412 CATTTTCCTGGTCTTGGTATATTGAAA 58.252 33.333 0.00 0.00 0.00 2.69
2169 3045 7.893302 ACATTTTCCTGGTCTTGGTATATTGAA 59.107 33.333 0.00 0.00 0.00 2.69
2170 3046 7.410174 ACATTTTCCTGGTCTTGGTATATTGA 58.590 34.615 0.00 0.00 0.00 2.57
2171 3047 7.557719 AGACATTTTCCTGGTCTTGGTATATTG 59.442 37.037 0.00 0.00 38.69 1.90
2172 3048 7.557719 CAGACATTTTCCTGGTCTTGGTATATT 59.442 37.037 0.00 0.00 39.75 1.28
2173 3049 7.056635 CAGACATTTTCCTGGTCTTGGTATAT 58.943 38.462 0.00 0.00 39.75 0.86
2174 3050 6.214615 TCAGACATTTTCCTGGTCTTGGTATA 59.785 38.462 0.00 0.00 39.75 1.47
2175 3051 5.014123 TCAGACATTTTCCTGGTCTTGGTAT 59.986 40.000 0.00 0.00 39.75 2.73
2176 3052 4.349636 TCAGACATTTTCCTGGTCTTGGTA 59.650 41.667 0.00 0.00 39.75 3.25
2177 3053 3.138283 TCAGACATTTTCCTGGTCTTGGT 59.862 43.478 0.00 0.00 39.75 3.67
2221 3097 8.851145 AGAAGACAGACGTGTATATATCACAAT 58.149 33.333 0.00 3.86 36.88 2.71
2222 3098 8.221965 AGAAGACAGACGTGTATATATCACAA 57.778 34.615 0.00 0.00 36.88 3.33
2224 3100 7.804129 GGAAGAAGACAGACGTGTATATATCAC 59.196 40.741 0.00 0.00 36.88 3.06
2226 3102 8.101654 AGGAAGAAGACAGACGTGTATATATC 57.898 38.462 0.00 0.00 36.88 1.63
2232 3108 2.818432 GGAGGAAGAAGACAGACGTGTA 59.182 50.000 0.00 0.00 36.88 2.90
2234 3110 1.613925 TGGAGGAAGAAGACAGACGTG 59.386 52.381 0.00 0.00 0.00 4.49
2235 3111 1.889829 CTGGAGGAAGAAGACAGACGT 59.110 52.381 0.00 0.00 0.00 4.34
2236 3112 1.203523 CCTGGAGGAAGAAGACAGACG 59.796 57.143 0.00 0.00 37.39 4.18
2261 3137 1.135139 CATGAAGACTCGTCGGACCAT 59.865 52.381 1.91 0.00 34.09 3.55
2412 3294 0.396435 TGATGAACACGAAGCCAGGT 59.604 50.000 0.00 0.00 0.00 4.00
2416 3298 0.099436 GGCATGATGAACACGAAGCC 59.901 55.000 0.00 0.00 0.00 4.35
2450 3333 1.945394 GCACGAAGCATCATTCAGGAT 59.055 47.619 0.00 0.00 44.79 3.24
2457 3340 3.095911 CAGCGCACGAAGCATCAT 58.904 55.556 11.47 0.00 46.13 2.45
2470 3355 0.524392 CGAAGTAGTCCTCTGCAGCG 60.524 60.000 9.47 1.71 0.00 5.18
2471 3356 0.179124 CCGAAGTAGTCCTCTGCAGC 60.179 60.000 9.47 0.00 0.00 5.25
2491 3376 2.902846 ACGATCGGGAGCCTCGAG 60.903 66.667 20.98 5.13 40.09 4.04
2604 3489 2.030562 CCACGACCAAGTTCGCCT 59.969 61.111 0.00 0.00 43.06 5.52
2607 3492 0.670546 ATGAGCCACGACCAAGTTCG 60.671 55.000 0.00 0.00 44.87 3.95
2705 3602 3.312973 CAGTTGTAGTCTCCTAGTAGGCG 59.687 52.174 11.75 5.49 34.61 5.52
2708 3605 6.824704 AGTTAGCAGTTGTAGTCTCCTAGTAG 59.175 42.308 0.00 0.00 0.00 2.57
2849 3749 4.344968 ACAAAAGGACAAGAGAATTTGGGG 59.655 41.667 0.00 0.00 33.31 4.96
3032 3985 4.000325 TGTTAACGATGGACATGGTCTTG 59.000 43.478 0.26 0.00 32.47 3.02
3035 3988 3.331150 TGTGTTAACGATGGACATGGTC 58.669 45.455 0.26 0.00 0.00 4.02
3045 3998 9.689976 TTGATTTGATTTGATTGTGTTAACGAT 57.310 25.926 0.26 0.00 32.70 3.73
3290 4250 4.829492 GCCCTTCCATCTAAAATACAGCAT 59.171 41.667 0.00 0.00 0.00 3.79
3292 4252 4.036852 GTGCCCTTCCATCTAAAATACAGC 59.963 45.833 0.00 0.00 0.00 4.40
3338 4308 1.812571 AGCGGTCTAATGTTTGCCAAG 59.187 47.619 0.00 0.00 0.00 3.61
3342 4312 3.282831 ACAAAGCGGTCTAATGTTTGC 57.717 42.857 0.00 0.00 32.45 3.68
3554 4532 4.732065 TCCCTCCGTTCCAAAATACTTTT 58.268 39.130 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.