Multiple sequence alignment - TraesCS2B01G556000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G556000 chr2B 100.000 3143 0 0 1 3143 751254931 751258073 0.000000e+00 5805.0
1 TraesCS2B01G556000 chr2B 94.655 580 31 0 1 580 786365414 786364835 0.000000e+00 900.0
2 TraesCS2B01G556000 chr2B 100.000 35 0 0 2258 2292 576653132 576653166 7.280000e-07 65.8
3 TraesCS2B01G556000 chr2B 97.222 36 0 1 2258 2293 85321971 85321937 3.390000e-05 60.2
4 TraesCS2B01G556000 chr2B 100.000 32 0 0 2257 2288 525255188 525255219 3.390000e-05 60.2
5 TraesCS2B01G556000 chr2A 91.519 2252 115 31 940 3143 746596526 746598749 0.000000e+00 3031.0
6 TraesCS2B01G556000 chr2D 95.987 1246 47 3 981 2224 616502040 616503284 0.000000e+00 2021.0
7 TraesCS2B01G556000 chr2D 91.638 861 57 9 2286 3143 616503306 616504154 0.000000e+00 1177.0
8 TraesCS2B01G556000 chr2D 94.483 580 32 0 1 580 516061643 516061064 0.000000e+00 894.0
9 TraesCS2B01G556000 chr2D 94.483 580 32 0 1 580 546969964 546970543 0.000000e+00 894.0
10 TraesCS2B01G556000 chr2D 92.549 255 15 3 689 939 647763100 647763354 2.300000e-96 363.0
11 TraesCS2B01G556000 chr2D 100.000 35 0 0 2258 2292 54674315 54674281 7.280000e-07 65.8
12 TraesCS2B01G556000 chr2D 97.059 34 1 0 2225 2258 54674324 54674291 1.220000e-04 58.4
13 TraesCS2B01G556000 chr2D 97.059 34 1 0 2225 2258 80729807 80729774 1.220000e-04 58.4
14 TraesCS2B01G556000 chr2D 100.000 30 0 0 2258 2287 80729798 80729769 4.380000e-04 56.5
15 TraesCS2B01G556000 chr7D 94.483 580 32 0 1 580 493221385 493221964 0.000000e+00 894.0
16 TraesCS2B01G556000 chr7D 92.549 255 15 3 689 939 78042674 78042420 2.300000e-96 363.0
17 TraesCS2B01G556000 chr7D 92.549 255 15 3 689 939 96378913 96378659 2.300000e-96 363.0
18 TraesCS2B01G556000 chr7D 100.000 31 0 0 2258 2288 403560479 403560509 1.220000e-04 58.4
19 TraesCS2B01G556000 chr7D 97.059 34 1 0 2225 2258 608735068 608735101 1.220000e-04 58.4
20 TraesCS2B01G556000 chr7D 90.244 41 2 1 2218 2258 403560465 403560503 6.000000e-03 52.8
21 TraesCS2B01G556000 chr1D 94.483 580 32 0 1 580 106919094 106918515 0.000000e+00 894.0
22 TraesCS2B01G556000 chr1D 94.310 580 33 0 1 580 56721829 56721250 0.000000e+00 889.0
23 TraesCS2B01G556000 chr1D 100.000 31 0 0 2258 2288 81519 81489 1.220000e-04 58.4
24 TraesCS2B01G556000 chr1D 97.059 34 1 0 2225 2258 81528 81495 1.220000e-04 58.4
25 TraesCS2B01G556000 chr1D 100.000 29 0 0 2260 2288 480391852 480391880 2.000000e-03 54.7
26 TraesCS2B01G556000 chr1A 94.483 580 32 0 1 580 310390393 310389814 0.000000e+00 894.0
27 TraesCS2B01G556000 chr5B 94.483 580 31 1 1 580 311968666 311968088 0.000000e+00 893.0
28 TraesCS2B01G556000 chr5B 92.549 255 15 2 689 939 273258509 273258255 2.300000e-96 363.0
29 TraesCS2B01G556000 chr4D 94.310 580 33 0 1 580 90257325 90256746 0.000000e+00 889.0
30 TraesCS2B01G556000 chr4D 100.000 32 0 0 2258 2289 101653224 101653255 3.390000e-05 60.2
31 TraesCS2B01G556000 chr4D 94.737 38 1 1 2222 2258 101653211 101653248 1.220000e-04 58.4
32 TraesCS2B01G556000 chr4B 94.118 255 11 3 689 939 87821034 87821288 4.920000e-103 385.0
33 TraesCS2B01G556000 chr4B 97.297 37 1 0 2238 2274 599169017 599168981 2.620000e-06 63.9
34 TraesCS2B01G556000 chr4B 100.000 32 0 0 2258 2289 145804151 145804182 3.390000e-05 60.2
35 TraesCS2B01G556000 chr4B 94.737 38 1 1 2222 2258 145804138 145804175 1.220000e-04 58.4
36 TraesCS2B01G556000 chrUn 92.549 255 15 3 689 939 24269871 24270125 2.300000e-96 363.0
37 TraesCS2B01G556000 chrUn 100.000 34 0 0 2259 2292 96234267 96234300 2.620000e-06 63.9
38 TraesCS2B01G556000 chr6D 92.549 255 14 4 689 938 141141496 141141750 8.290000e-96 361.0
39 TraesCS2B01G556000 chr6D 100.000 32 0 0 2258 2289 368780387 368780356 3.390000e-05 60.2
40 TraesCS2B01G556000 chr6D 97.059 34 1 0 2225 2258 368780396 368780363 1.220000e-04 58.4
41 TraesCS2B01G556000 chr6D 94.444 36 2 0 2257 2292 15398246 15398281 4.380000e-04 56.5
42 TraesCS2B01G556000 chr6D 88.889 45 3 2 2213 2256 460573343 460573386 2.000000e-03 54.7
43 TraesCS2B01G556000 chr5A 91.603 262 18 3 682 939 564601734 564601995 2.980000e-95 359.0
44 TraesCS2B01G556000 chr3A 91.860 258 19 2 684 939 466307592 466307849 2.980000e-95 359.0
45 TraesCS2B01G556000 chr3A 100.000 35 0 0 2258 2292 651513189 651513223 7.280000e-07 65.8
46 TraesCS2B01G556000 chr3A 96.970 33 1 0 2225 2257 746904760 746904728 4.380000e-04 56.5
47 TraesCS2B01G556000 chr6B 95.122 41 2 0 2218 2258 123502272 123502312 7.280000e-07 65.8
48 TraesCS2B01G556000 chr7B 97.143 35 1 0 2254 2288 137462328 137462362 3.390000e-05 60.2
49 TraesCS2B01G556000 chr6A 100.000 31 0 0 2260 2290 7393874 7393904 1.220000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G556000 chr2B 751254931 751258073 3142 False 5805 5805 100.0000 1 3143 1 chr2B.!!$F3 3142
1 TraesCS2B01G556000 chr2B 786364835 786365414 579 True 900 900 94.6550 1 580 1 chr2B.!!$R2 579
2 TraesCS2B01G556000 chr2A 746596526 746598749 2223 False 3031 3031 91.5190 940 3143 1 chr2A.!!$F1 2203
3 TraesCS2B01G556000 chr2D 616502040 616504154 2114 False 1599 2021 93.8125 981 3143 2 chr2D.!!$F3 2162
4 TraesCS2B01G556000 chr2D 516061064 516061643 579 True 894 894 94.4830 1 580 1 chr2D.!!$R1 579
5 TraesCS2B01G556000 chr2D 546969964 546970543 579 False 894 894 94.4830 1 580 1 chr2D.!!$F1 579
6 TraesCS2B01G556000 chr7D 493221385 493221964 579 False 894 894 94.4830 1 580 1 chr7D.!!$F1 579
7 TraesCS2B01G556000 chr1D 106918515 106919094 579 True 894 894 94.4830 1 580 1 chr1D.!!$R2 579
8 TraesCS2B01G556000 chr1D 56721250 56721829 579 True 889 889 94.3100 1 580 1 chr1D.!!$R1 579
9 TraesCS2B01G556000 chr1A 310389814 310390393 579 True 894 894 94.4830 1 580 1 chr1A.!!$R1 579
10 TraesCS2B01G556000 chr5B 311968088 311968666 578 True 893 893 94.4830 1 580 1 chr5B.!!$R2 579
11 TraesCS2B01G556000 chr4D 90256746 90257325 579 True 889 889 94.3100 1 580 1 chr4D.!!$R1 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
590 591 0.036732 AACATCATGCCCACACGTCT 59.963 50.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2220 2234 0.324943 ATGGGACGGAGGAAGTGTTG 59.675 55.0 0.0 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 2.350522 GATTCCTGTCACAGCGAACAT 58.649 47.619 9.98 0.00 0.00 2.71
82 83 4.187694 TGTCACAGCGAACATATGCATTA 58.812 39.130 3.54 0.00 0.00 1.90
140 141 2.781923 CCGGATAATCATGGATGCACA 58.218 47.619 0.00 0.00 0.00 4.57
158 159 9.329913 GGATGCACAAAATTATAATAGTAAGCG 57.670 33.333 0.00 0.00 0.00 4.68
191 192 2.540383 CTGGTGGGCTGCTATATAGGA 58.460 52.381 11.72 7.83 0.00 2.94
364 365 3.329520 TGTAAGGGATAACAAGCACTGGT 59.670 43.478 0.00 0.00 0.00 4.00
371 372 2.057137 AACAAGCACTGGTCACATGT 57.943 45.000 0.00 0.00 0.00 3.21
417 418 6.380846 CCAAATGGGTTAAATCCATCTGAAGA 59.619 38.462 11.80 0.00 43.61 2.87
428 429 5.441718 TCCATCTGAAGATAAGCCAAGTT 57.558 39.130 0.00 0.00 32.63 2.66
449 450 6.527423 AGTTTAATGTTTCTCGGGTCAGTAA 58.473 36.000 0.00 0.00 0.00 2.24
454 455 4.710324 TGTTTCTCGGGTCAGTAACAAAT 58.290 39.130 0.00 0.00 32.53 2.32
484 485 6.293004 TGTTTCTGGTTGAAGTTTTTCCAT 57.707 33.333 0.00 0.00 35.89 3.41
491 492 7.505585 TCTGGTTGAAGTTTTTCCATTCACTAT 59.494 33.333 0.00 0.00 32.91 2.12
498 499 7.093322 AGTTTTTCCATTCACTATCATGAGC 57.907 36.000 0.09 0.00 0.00 4.26
555 556 3.197766 TGGTTCCTAGAATGCCACAGTAG 59.802 47.826 0.00 0.00 0.00 2.57
572 573 6.459066 CACAGTAGATCCTCTCTTGTTTCAA 58.541 40.000 0.00 0.00 35.28 2.69
580 581 4.456911 TCCTCTCTTGTTTCAACATCATGC 59.543 41.667 0.00 0.00 38.95 4.06
581 582 4.380233 CCTCTCTTGTTTCAACATCATGCC 60.380 45.833 0.00 0.00 38.95 4.40
582 583 3.507233 TCTCTTGTTTCAACATCATGCCC 59.493 43.478 0.00 0.00 38.95 5.36
583 584 3.229293 TCTTGTTTCAACATCATGCCCA 58.771 40.909 0.00 0.00 38.95 5.36
584 585 3.005684 TCTTGTTTCAACATCATGCCCAC 59.994 43.478 0.00 0.00 38.95 4.61
585 586 2.314246 TGTTTCAACATCATGCCCACA 58.686 42.857 0.00 0.00 33.17 4.17
586 587 2.035704 TGTTTCAACATCATGCCCACAC 59.964 45.455 0.00 0.00 33.17 3.82
587 588 0.880441 TTCAACATCATGCCCACACG 59.120 50.000 0.00 0.00 0.00 4.49
588 589 0.250684 TCAACATCATGCCCACACGT 60.251 50.000 0.00 0.00 0.00 4.49
589 590 0.168788 CAACATCATGCCCACACGTC 59.831 55.000 0.00 0.00 0.00 4.34
590 591 0.036732 AACATCATGCCCACACGTCT 59.963 50.000 0.00 0.00 0.00 4.18
591 592 0.901827 ACATCATGCCCACACGTCTA 59.098 50.000 0.00 0.00 0.00 2.59
592 593 1.486310 ACATCATGCCCACACGTCTAT 59.514 47.619 0.00 0.00 0.00 1.98
593 594 2.698274 ACATCATGCCCACACGTCTATA 59.302 45.455 0.00 0.00 0.00 1.31
594 595 3.243873 ACATCATGCCCACACGTCTATAG 60.244 47.826 0.00 0.00 0.00 1.31
595 596 2.384828 TCATGCCCACACGTCTATAGT 58.615 47.619 0.00 0.00 0.00 2.12
596 597 2.764010 TCATGCCCACACGTCTATAGTT 59.236 45.455 0.00 0.00 0.00 2.24
597 598 3.196901 TCATGCCCACACGTCTATAGTTT 59.803 43.478 0.00 0.00 0.00 2.66
598 599 3.688694 TGCCCACACGTCTATAGTTTT 57.311 42.857 0.00 0.00 0.00 2.43
599 600 4.010667 TGCCCACACGTCTATAGTTTTT 57.989 40.909 0.00 0.00 0.00 1.94
600 601 3.998341 TGCCCACACGTCTATAGTTTTTC 59.002 43.478 0.00 0.00 0.00 2.29
601 602 4.251268 GCCCACACGTCTATAGTTTTTCT 58.749 43.478 0.00 0.00 0.00 2.52
602 603 5.047164 TGCCCACACGTCTATAGTTTTTCTA 60.047 40.000 0.00 0.00 0.00 2.10
603 604 5.870978 GCCCACACGTCTATAGTTTTTCTAA 59.129 40.000 0.00 0.00 31.94 2.10
604 605 6.369615 GCCCACACGTCTATAGTTTTTCTAAA 59.630 38.462 0.00 0.00 31.94 1.85
605 606 7.095102 GCCCACACGTCTATAGTTTTTCTAAAA 60.095 37.037 0.00 0.00 31.94 1.52
606 607 8.943002 CCCACACGTCTATAGTTTTTCTAAAAT 58.057 33.333 0.00 0.00 31.94 1.82
607 608 9.968743 CCACACGTCTATAGTTTTTCTAAAATC 57.031 33.333 0.00 0.00 31.94 2.17
618 619 8.950403 AGTTTTTCTAAAATCATGTAGCGTTC 57.050 30.769 0.00 0.00 0.00 3.95
619 620 8.564574 AGTTTTTCTAAAATCATGTAGCGTTCA 58.435 29.630 0.00 0.00 0.00 3.18
620 621 8.627428 GTTTTTCTAAAATCATGTAGCGTTCAC 58.373 33.333 0.00 0.00 0.00 3.18
621 622 5.696260 TCTAAAATCATGTAGCGTTCACG 57.304 39.130 0.00 0.00 43.27 4.35
622 623 3.740044 AAAATCATGTAGCGTTCACGG 57.260 42.857 0.81 0.00 40.23 4.94
623 624 1.006832 AATCATGTAGCGTTCACGGC 58.993 50.000 0.81 0.00 40.23 5.68
624 625 0.810031 ATCATGTAGCGTTCACGGCC 60.810 55.000 0.81 0.00 40.23 6.13
625 626 2.508439 ATGTAGCGTTCACGGCCG 60.508 61.111 26.86 26.86 40.23 6.13
626 627 2.997075 ATGTAGCGTTCACGGCCGA 61.997 57.895 35.90 7.50 40.23 5.54
627 628 2.879462 GTAGCGTTCACGGCCGAG 60.879 66.667 35.90 26.34 40.23 4.63
628 629 3.057548 TAGCGTTCACGGCCGAGA 61.058 61.111 35.90 28.58 40.23 4.04
629 630 3.047718 TAGCGTTCACGGCCGAGAG 62.048 63.158 35.90 19.62 40.23 3.20
630 631 4.415332 GCGTTCACGGCCGAGAGA 62.415 66.667 35.90 23.03 40.23 3.10
631 632 2.202492 CGTTCACGGCCGAGAGAG 60.202 66.667 35.90 22.07 35.37 3.20
632 633 2.182030 GTTCACGGCCGAGAGAGG 59.818 66.667 35.90 13.40 0.00 3.69
633 634 3.068691 TTCACGGCCGAGAGAGGG 61.069 66.667 35.90 11.56 0.00 4.30
639 640 3.771160 GCCGAGAGAGGGCCGAAA 61.771 66.667 0.00 0.00 44.97 3.46
640 641 3.095347 GCCGAGAGAGGGCCGAAAT 62.095 63.158 0.00 0.00 44.97 2.17
641 642 1.522569 CCGAGAGAGGGCCGAAATT 59.477 57.895 0.00 0.00 0.00 1.82
642 643 0.811616 CCGAGAGAGGGCCGAAATTG 60.812 60.000 0.00 0.00 0.00 2.32
643 644 1.432270 CGAGAGAGGGCCGAAATTGC 61.432 60.000 0.00 0.00 0.00 3.56
651 652 3.350766 GCCGAAATTGCCATTCTGG 57.649 52.632 0.00 0.00 41.55 3.86
662 663 1.631405 CCATTCTGGCCCTTTTGTCA 58.369 50.000 0.00 0.00 0.00 3.58
663 664 1.969923 CCATTCTGGCCCTTTTGTCAA 59.030 47.619 0.00 0.00 0.00 3.18
664 665 2.368221 CCATTCTGGCCCTTTTGTCAAA 59.632 45.455 0.00 0.00 0.00 2.69
665 666 3.392882 CATTCTGGCCCTTTTGTCAAAC 58.607 45.455 0.00 0.00 0.00 2.93
666 667 2.452600 TCTGGCCCTTTTGTCAAACT 57.547 45.000 0.00 0.00 0.00 2.66
667 668 2.745968 TCTGGCCCTTTTGTCAAACTT 58.254 42.857 0.00 0.00 0.00 2.66
668 669 3.904717 TCTGGCCCTTTTGTCAAACTTA 58.095 40.909 0.00 0.00 0.00 2.24
669 670 4.282496 TCTGGCCCTTTTGTCAAACTTAA 58.718 39.130 0.00 0.00 0.00 1.85
670 671 4.340950 TCTGGCCCTTTTGTCAAACTTAAG 59.659 41.667 0.00 0.00 0.00 1.85
671 672 3.181470 TGGCCCTTTTGTCAAACTTAAGC 60.181 43.478 0.00 0.00 0.00 3.09
672 673 3.181470 GGCCCTTTTGTCAAACTTAAGCA 60.181 43.478 1.29 0.00 0.00 3.91
673 674 3.802139 GCCCTTTTGTCAAACTTAAGCAC 59.198 43.478 1.29 0.00 0.00 4.40
674 675 4.041723 CCCTTTTGTCAAACTTAAGCACG 58.958 43.478 1.29 0.00 0.00 5.34
675 676 4.201970 CCCTTTTGTCAAACTTAAGCACGA 60.202 41.667 1.29 0.00 0.00 4.35
676 677 5.507315 CCCTTTTGTCAAACTTAAGCACGAT 60.507 40.000 1.29 0.00 0.00 3.73
677 678 5.977129 CCTTTTGTCAAACTTAAGCACGATT 59.023 36.000 1.29 0.00 0.00 3.34
678 679 6.475402 CCTTTTGTCAAACTTAAGCACGATTT 59.525 34.615 1.29 0.00 0.00 2.17
679 680 7.010091 CCTTTTGTCAAACTTAAGCACGATTTT 59.990 33.333 1.29 0.00 0.00 1.82
680 681 8.912787 TTTTGTCAAACTTAAGCACGATTTTA 57.087 26.923 1.29 0.00 0.00 1.52
681 682 9.522804 TTTTGTCAAACTTAAGCACGATTTTAT 57.477 25.926 1.29 0.00 0.00 1.40
694 695 8.379457 AGCACGATTTTATATTTTCTACTCCC 57.621 34.615 0.00 0.00 0.00 4.30
695 696 8.211629 AGCACGATTTTATATTTTCTACTCCCT 58.788 33.333 0.00 0.00 0.00 4.20
696 697 8.496751 GCACGATTTTATATTTTCTACTCCCTC 58.503 37.037 0.00 0.00 0.00 4.30
697 698 8.989980 CACGATTTTATATTTTCTACTCCCTCC 58.010 37.037 0.00 0.00 0.00 4.30
698 699 7.871463 ACGATTTTATATTTTCTACTCCCTCCG 59.129 37.037 0.00 0.00 0.00 4.63
699 700 7.871463 CGATTTTATATTTTCTACTCCCTCCGT 59.129 37.037 0.00 0.00 0.00 4.69
700 701 9.557061 GATTTTATATTTTCTACTCCCTCCGTT 57.443 33.333 0.00 0.00 0.00 4.44
701 702 8.953368 TTTTATATTTTCTACTCCCTCCGTTC 57.047 34.615 0.00 0.00 0.00 3.95
702 703 3.908643 ATTTTCTACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
703 704 2.314071 TTTCTACTCCCTCCGTTCCA 57.686 50.000 0.00 0.00 0.00 3.53
704 705 2.544844 TTCTACTCCCTCCGTTCCAT 57.455 50.000 0.00 0.00 0.00 3.41
705 706 3.675348 TTCTACTCCCTCCGTTCCATA 57.325 47.619 0.00 0.00 0.00 2.74
706 707 3.675348 TCTACTCCCTCCGTTCCATAA 57.325 47.619 0.00 0.00 0.00 1.90
707 708 4.194678 TCTACTCCCTCCGTTCCATAAT 57.805 45.455 0.00 0.00 0.00 1.28
708 709 3.895656 TCTACTCCCTCCGTTCCATAATG 59.104 47.826 0.00 0.00 0.00 1.90
709 710 2.478292 ACTCCCTCCGTTCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
710 711 3.649843 ACTCCCTCCGTTCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
711 712 3.641906 ACTCCCTCCGTTCCATAATGTAG 59.358 47.826 0.00 0.00 0.00 2.74
712 713 3.641906 CTCCCTCCGTTCCATAATGTAGT 59.358 47.826 0.00 0.00 0.00 2.73
713 714 3.386726 TCCCTCCGTTCCATAATGTAGTG 59.613 47.826 0.00 0.00 0.00 2.74
714 715 3.131396 CCTCCGTTCCATAATGTAGTGC 58.869 50.000 0.00 0.00 0.00 4.40
715 716 3.131396 CTCCGTTCCATAATGTAGTGCC 58.869 50.000 0.00 0.00 0.00 5.01
716 717 2.769663 TCCGTTCCATAATGTAGTGCCT 59.230 45.455 0.00 0.00 0.00 4.75
717 718 3.962063 TCCGTTCCATAATGTAGTGCCTA 59.038 43.478 0.00 0.00 0.00 3.93
718 719 4.591498 TCCGTTCCATAATGTAGTGCCTAT 59.409 41.667 0.00 0.00 0.00 2.57
719 720 5.776208 TCCGTTCCATAATGTAGTGCCTATA 59.224 40.000 0.00 0.00 0.00 1.31
720 721 6.071560 TCCGTTCCATAATGTAGTGCCTATAG 60.072 42.308 0.00 0.00 0.00 1.31
721 722 6.071560 CCGTTCCATAATGTAGTGCCTATAGA 60.072 42.308 0.00 0.00 0.00 1.98
722 723 7.363880 CCGTTCCATAATGTAGTGCCTATAGAT 60.364 40.741 0.00 0.00 0.00 1.98
723 724 8.035394 CGTTCCATAATGTAGTGCCTATAGATT 58.965 37.037 0.00 0.00 0.00 2.40
724 725 9.726438 GTTCCATAATGTAGTGCCTATAGATTT 57.274 33.333 0.00 0.00 0.00 2.17
726 727 9.944376 TCCATAATGTAGTGCCTATAGATTTTC 57.056 33.333 0.00 0.00 0.00 2.29
727 728 9.950496 CCATAATGTAGTGCCTATAGATTTTCT 57.050 33.333 0.00 0.00 0.00 2.52
731 732 7.898014 TGTAGTGCCTATAGATTTTCTGAGA 57.102 36.000 0.00 0.00 0.00 3.27
732 733 8.306313 TGTAGTGCCTATAGATTTTCTGAGAA 57.694 34.615 0.00 0.00 0.00 2.87
733 734 8.758829 TGTAGTGCCTATAGATTTTCTGAGAAA 58.241 33.333 3.02 3.02 0.00 2.52
734 735 9.771534 GTAGTGCCTATAGATTTTCTGAGAAAT 57.228 33.333 8.64 0.00 32.16 2.17
735 736 8.900983 AGTGCCTATAGATTTTCTGAGAAATC 57.099 34.615 8.64 8.49 43.24 2.17
736 737 8.489489 AGTGCCTATAGATTTTCTGAGAAATCA 58.511 33.333 8.64 0.00 44.60 2.57
737 738 9.113838 GTGCCTATAGATTTTCTGAGAAATCAA 57.886 33.333 8.64 0.00 44.60 2.57
738 739 9.685276 TGCCTATAGATTTTCTGAGAAATCAAA 57.315 29.630 8.64 0.00 44.60 2.69
739 740 9.943163 GCCTATAGATTTTCTGAGAAATCAAAC 57.057 33.333 8.64 0.00 44.60 2.93
744 745 8.585189 AGATTTTCTGAGAAATCAAACTTTGC 57.415 30.769 8.64 0.00 44.60 3.68
745 746 8.199449 AGATTTTCTGAGAAATCAAACTTTGCA 58.801 29.630 8.64 0.00 44.60 4.08
746 747 8.721019 ATTTTCTGAGAAATCAAACTTTGCAA 57.279 26.923 8.64 0.00 0.00 4.08
747 748 8.545229 TTTTCTGAGAAATCAAACTTTGCAAA 57.455 26.923 12.14 12.14 0.00 3.68
748 749 7.524294 TTCTGAGAAATCAAACTTTGCAAAC 57.476 32.000 8.05 0.00 0.00 2.93
749 750 6.866480 TCTGAGAAATCAAACTTTGCAAACT 58.134 32.000 8.05 0.00 0.00 2.66
750 751 7.322664 TCTGAGAAATCAAACTTTGCAAACTT 58.677 30.769 8.05 2.81 0.00 2.66
751 752 7.818930 TCTGAGAAATCAAACTTTGCAAACTTT 59.181 29.630 8.05 9.26 0.00 2.66
752 753 7.741198 TGAGAAATCAAACTTTGCAAACTTTG 58.259 30.769 25.88 25.88 0.00 2.77
753 754 7.601886 TGAGAAATCAAACTTTGCAAACTTTGA 59.398 29.630 31.31 31.31 36.16 2.69
754 755 7.742151 AGAAATCAAACTTTGCAAACTTTGAC 58.258 30.769 31.60 23.86 35.26 3.18
755 756 6.421377 AATCAAACTTTGCAAACTTTGACC 57.579 33.333 31.60 0.00 35.26 4.02
756 757 4.887748 TCAAACTTTGCAAACTTTGACCA 58.112 34.783 28.34 15.97 30.84 4.02
757 758 5.300752 TCAAACTTTGCAAACTTTGACCAA 58.699 33.333 28.34 15.72 30.84 3.67
758 759 5.407995 TCAAACTTTGCAAACTTTGACCAAG 59.592 36.000 28.34 12.42 38.64 3.61
771 772 7.696992 ACTTTGACCAAGTTTGTAGAGAAAA 57.303 32.000 0.00 0.00 43.89 2.29
772 773 8.117813 ACTTTGACCAAGTTTGTAGAGAAAAA 57.882 30.769 0.00 0.00 43.89 1.94
773 774 8.749354 ACTTTGACCAAGTTTGTAGAGAAAAAT 58.251 29.630 0.00 0.00 43.89 1.82
849 850 9.935241 ATGAATCTACTGATATATGGTTCACAC 57.065 33.333 0.00 0.00 31.70 3.82
850 851 9.147732 TGAATCTACTGATATATGGTTCACACT 57.852 33.333 0.00 0.00 31.70 3.55
851 852 9.632807 GAATCTACTGATATATGGTTCACACTC 57.367 37.037 0.00 0.00 31.70 3.51
852 853 8.948401 ATCTACTGATATATGGTTCACACTCT 57.052 34.615 0.00 0.00 0.00 3.24
854 855 9.508642 TCTACTGATATATGGTTCACACTCTAG 57.491 37.037 0.00 0.00 0.00 2.43
855 856 9.508642 CTACTGATATATGGTTCACACTCTAGA 57.491 37.037 0.00 0.00 0.00 2.43
856 857 8.948401 ACTGATATATGGTTCACACTCTAGAT 57.052 34.615 0.00 0.00 0.00 1.98
857 858 8.801299 ACTGATATATGGTTCACACTCTAGATG 58.199 37.037 0.00 0.00 0.00 2.90
858 859 8.712228 TGATATATGGTTCACACTCTAGATGT 57.288 34.615 0.00 0.00 0.00 3.06
859 860 9.807921 TGATATATGGTTCACACTCTAGATGTA 57.192 33.333 0.00 0.00 0.00 2.29
882 883 9.757227 TGTAAATATTTTTCTCCACAAACTTGG 57.243 29.630 5.91 0.00 38.10 3.61
883 884 9.758651 GTAAATATTTTTCTCCACAAACTTGGT 57.241 29.630 5.91 0.00 37.93 3.67
884 885 8.887036 AAATATTTTTCTCCACAAACTTGGTC 57.113 30.769 0.00 0.00 37.93 4.02
885 886 5.930837 ATTTTTCTCCACAAACTTGGTCA 57.069 34.783 0.00 0.00 37.93 4.02
886 887 5.730296 TTTTTCTCCACAAACTTGGTCAA 57.270 34.783 0.00 0.00 37.93 3.18
887 888 5.730296 TTTTCTCCACAAACTTGGTCAAA 57.270 34.783 0.00 0.00 37.93 2.69
888 889 4.981806 TTCTCCACAAACTTGGTCAAAG 57.018 40.909 0.00 0.00 42.07 2.77
901 902 6.335176 CTTGGTCAAAGTTTGTGATGTTTG 57.665 37.500 15.08 0.00 0.00 2.93
902 903 5.651387 TGGTCAAAGTTTGTGATGTTTGA 57.349 34.783 15.08 0.00 36.74 2.69
908 909 8.600449 TCAAAGTTTGTGATGTTTGACTTTTT 57.400 26.923 15.08 0.00 35.75 1.94
909 910 9.698309 TCAAAGTTTGTGATGTTTGACTTTTTA 57.302 25.926 15.08 0.00 35.75 1.52
936 937 6.861065 AATAAGCACTACATTATGGAACGG 57.139 37.500 0.00 0.00 0.00 4.44
937 938 4.481368 AAGCACTACATTATGGAACGGA 57.519 40.909 0.00 0.00 0.00 4.69
938 939 4.060038 AGCACTACATTATGGAACGGAG 57.940 45.455 0.00 0.00 0.00 4.63
948 949 6.495181 ACATTATGGAACGGAGTATCAGATCT 59.505 38.462 0.00 0.00 45.00 2.75
950 951 4.171878 TGGAACGGAGTATCAGATCTCT 57.828 45.455 0.00 0.00 45.00 3.10
975 977 3.801997 CCCCCTGCCAGGCTAGTG 61.802 72.222 14.15 0.00 32.73 2.74
1113 1127 2.531942 ACCGGGGAAAAGGAGCCT 60.532 61.111 6.32 0.00 0.00 4.58
1398 1412 2.811317 CGGCTCTTCGCGCTCTTT 60.811 61.111 5.56 0.00 40.44 2.52
1642 1656 3.303135 AGTCGCCGGACAAGCTCA 61.303 61.111 5.05 0.00 45.92 4.26
1816 1830 2.031919 AGTTCGCCGGCATGTTCA 59.968 55.556 28.98 0.00 0.00 3.18
2008 2022 2.438434 CCAAGGGCGTGGACATCC 60.438 66.667 0.00 0.00 41.65 3.51
2043 2057 0.538746 TGACCGTAGTGAGACTGCCA 60.539 55.000 0.00 0.00 0.00 4.92
2088 2102 6.539103 GGTACATTCTGAAATACAAGGGAGAC 59.461 42.308 13.81 0.00 0.00 3.36
2097 2111 1.079543 CAAGGGAGACGTGCCTGAG 60.080 63.158 0.00 0.00 45.69 3.35
2126 2140 1.867698 GCTGTATCCTCAAGCTCGAGC 60.868 57.143 30.01 30.01 42.49 5.03
2197 2211 1.818674 CACCATGTTTAGGGCAGAACC 59.181 52.381 0.00 0.00 37.93 3.62
2213 2227 1.474332 AACCTGTGCCCAGCCATTTG 61.474 55.000 0.00 0.00 37.38 2.32
2216 2230 1.685803 CCTGTGCCCAGCCATTTGATA 60.686 52.381 0.00 0.00 37.38 2.15
2217 2231 1.406539 CTGTGCCCAGCCATTTGATAC 59.593 52.381 0.00 0.00 0.00 2.24
2219 2233 2.034124 GTGCCCAGCCATTTGATACAT 58.966 47.619 0.00 0.00 0.00 2.29
2220 2234 2.035066 GTGCCCAGCCATTTGATACATC 59.965 50.000 0.00 0.00 0.00 3.06
2221 2235 2.309613 GCCCAGCCATTTGATACATCA 58.690 47.619 0.00 0.00 34.44 3.07
2222 2236 2.694628 GCCCAGCCATTTGATACATCAA 59.305 45.455 0.45 0.45 44.42 2.57
2223 2237 3.491447 GCCCAGCCATTTGATACATCAAC 60.491 47.826 4.14 0.00 45.63 3.18
2227 2258 5.105635 CCAGCCATTTGATACATCAACACTT 60.106 40.000 4.14 0.00 45.63 3.16
2244 2275 3.387050 ACACTTCCTCCGTCCCATAATAC 59.613 47.826 0.00 0.00 0.00 1.89
2250 2281 3.555168 CCTCCGTCCCATAATACAAGAGC 60.555 52.174 0.00 0.00 0.00 4.09
2257 2288 6.027749 GTCCCATAATACAAGAGCGTTTTTG 58.972 40.000 0.85 0.85 0.00 2.44
2258 2289 5.708230 TCCCATAATACAAGAGCGTTTTTGT 59.292 36.000 12.58 12.58 40.39 2.83
2261 2292 4.499037 AATACAAGAGCGTTTTTGTCCC 57.501 40.909 11.39 0.00 38.41 4.46
2262 2293 1.757682 ACAAGAGCGTTTTTGTCCCA 58.242 45.000 2.22 0.00 32.32 4.37
2263 2294 2.306847 ACAAGAGCGTTTTTGTCCCAT 58.693 42.857 2.22 0.00 32.32 4.00
2264 2295 3.482436 ACAAGAGCGTTTTTGTCCCATA 58.518 40.909 2.22 0.00 32.32 2.74
2265 2296 3.886505 ACAAGAGCGTTTTTGTCCCATAA 59.113 39.130 2.22 0.00 32.32 1.90
2266 2297 4.522789 ACAAGAGCGTTTTTGTCCCATAAT 59.477 37.500 2.22 0.00 32.32 1.28
2267 2298 5.708230 ACAAGAGCGTTTTTGTCCCATAATA 59.292 36.000 2.22 0.00 32.32 0.98
2268 2299 5.813080 AGAGCGTTTTTGTCCCATAATAC 57.187 39.130 0.00 0.00 0.00 1.89
2269 2300 5.250200 AGAGCGTTTTTGTCCCATAATACA 58.750 37.500 0.00 0.00 0.00 2.29
2270 2301 5.708230 AGAGCGTTTTTGTCCCATAATACAA 59.292 36.000 0.00 0.00 33.92 2.41
2271 2302 5.949735 AGCGTTTTTGTCCCATAATACAAG 58.050 37.500 0.00 0.00 36.96 3.16
2272 2303 5.708230 AGCGTTTTTGTCCCATAATACAAGA 59.292 36.000 0.00 0.00 36.96 3.02
2273 2304 6.027749 GCGTTTTTGTCCCATAATACAAGAG 58.972 40.000 0.00 0.00 36.96 2.85
2274 2305 6.027749 CGTTTTTGTCCCATAATACAAGAGC 58.972 40.000 0.00 0.00 36.96 4.09
2275 2306 5.811399 TTTTGTCCCATAATACAAGAGCG 57.189 39.130 0.00 0.00 36.96 5.03
2276 2307 4.481368 TTGTCCCATAATACAAGAGCGT 57.519 40.909 0.00 0.00 32.11 5.07
2277 2308 4.481368 TGTCCCATAATACAAGAGCGTT 57.519 40.909 0.00 0.00 0.00 4.84
2278 2309 4.839121 TGTCCCATAATACAAGAGCGTTT 58.161 39.130 0.00 0.00 0.00 3.60
2279 2310 5.250200 TGTCCCATAATACAAGAGCGTTTT 58.750 37.500 0.00 0.00 0.00 2.43
2280 2311 5.708230 TGTCCCATAATACAAGAGCGTTTTT 59.292 36.000 0.00 0.00 0.00 1.94
2281 2312 6.027749 GTCCCATAATACAAGAGCGTTTTTG 58.972 40.000 0.85 0.85 0.00 2.44
2282 2313 5.941058 TCCCATAATACAAGAGCGTTTTTGA 59.059 36.000 9.51 0.00 0.00 2.69
2283 2314 6.027749 CCCATAATACAAGAGCGTTTTTGAC 58.972 40.000 9.51 0.00 0.00 3.18
2284 2315 6.348950 CCCATAATACAAGAGCGTTTTTGACA 60.349 38.462 9.51 0.00 0.00 3.58
2305 2336 4.186926 CACTAGTGTCTGATCCATGGTTG 58.813 47.826 15.06 0.78 0.00 3.77
2326 2357 2.284952 GTGCATTTTGTGTGGAGTTTGC 59.715 45.455 0.00 0.00 0.00 3.68
2331 2362 2.645730 TTGTGTGGAGTTTGCAACAC 57.354 45.000 9.63 9.63 0.00 3.32
2339 2370 1.003866 GAGTTTGCAACACAGACCGAC 60.004 52.381 0.00 0.00 33.88 4.79
2366 2397 6.494842 ACAATTATGCAACTATTAACTGGCG 58.505 36.000 0.00 0.00 0.00 5.69
2371 2402 4.006989 TGCAACTATTAACTGGCGTTCAT 58.993 39.130 0.00 0.00 34.59 2.57
2386 2417 5.863397 TGGCGTTCATCTGAATTTTCAAATC 59.137 36.000 0.00 0.00 36.64 2.17
2394 2425 6.588719 TCTGAATTTTCAAATCCCATCGTT 57.411 33.333 0.00 0.00 36.64 3.85
2397 2428 5.407995 TGAATTTTCAAATCCCATCGTTTGC 59.592 36.000 0.00 0.00 35.76 3.68
2404 2435 3.845781 ATCCCATCGTTTGCATCTACT 57.154 42.857 0.00 0.00 0.00 2.57
2410 2441 3.364889 TCGTTTGCATCTACTATCCCG 57.635 47.619 0.00 0.00 0.00 5.14
2416 2447 1.068472 GCATCTACTATCCCGACACCG 60.068 57.143 0.00 0.00 0.00 4.94
2461 2548 1.977854 TGTGGCATAACACAGGAGTCT 59.022 47.619 0.00 0.00 45.70 3.24
2463 2550 3.056107 TGTGGCATAACACAGGAGTCTAC 60.056 47.826 0.00 0.00 45.70 2.59
2541 2629 2.482490 GGTTGGATCTGCAATTGCCATC 60.482 50.000 26.94 24.41 41.18 3.51
2547 2636 4.331717 GGATCTGCAATTGCCATCAAAAAG 59.668 41.667 27.87 17.95 41.18 2.27
2581 2670 4.012374 GAGGGAAAGCTCATCATGAACAA 58.988 43.478 0.00 0.00 0.00 2.83
2587 2676 4.836125 AGCTCATCATGAACAACGTTTT 57.164 36.364 0.00 0.00 0.00 2.43
2602 2691 5.907391 ACAACGTTTTTCGATTGATCAGAAC 59.093 36.000 0.00 0.00 42.86 3.01
2607 2696 6.416455 CGTTTTTCGATTGATCAGAACCAAAA 59.584 34.615 0.00 0.00 42.86 2.44
2615 2704 8.562052 CGATTGATCAGAACCAAAATCATATCA 58.438 33.333 0.00 0.00 0.00 2.15
2624 2713 7.781219 AGAACCAAAATCATATCACCATGATCA 59.219 33.333 0.00 0.00 43.33 2.92
2636 2725 3.564225 CACCATGATCATGTCCACATCAG 59.436 47.826 29.23 15.62 37.11 2.90
2647 2736 4.847198 TGTCCACATCAGCAGAATATGTT 58.153 39.130 0.00 0.00 31.60 2.71
2674 2766 7.149973 TCTAACCTAATACATTATCACACGGC 58.850 38.462 0.00 0.00 0.00 5.68
2715 2807 6.720112 AATGCATGCCAATCTTAACTACAT 57.280 33.333 16.68 0.00 0.00 2.29
2740 2832 3.629855 CCTCTAGCTCGATTCAGAGTTCA 59.370 47.826 13.26 0.00 40.26 3.18
2741 2833 4.261155 CCTCTAGCTCGATTCAGAGTTCAG 60.261 50.000 13.26 0.00 40.26 3.02
2742 2834 4.518249 TCTAGCTCGATTCAGAGTTCAGA 58.482 43.478 0.00 5.35 40.26 3.27
2743 2835 4.944317 TCTAGCTCGATTCAGAGTTCAGAA 59.056 41.667 0.00 0.00 40.26 3.02
2744 2836 4.734398 AGCTCGATTCAGAGTTCAGAAT 57.266 40.909 0.09 0.09 40.26 2.40
2745 2837 5.083533 AGCTCGATTCAGAGTTCAGAATT 57.916 39.130 1.97 0.00 40.26 2.17
2746 2838 5.108517 AGCTCGATTCAGAGTTCAGAATTC 58.891 41.667 0.00 0.00 40.26 2.17
2754 2846 7.411486 TTCAGAGTTCAGAATTCCTACTAGG 57.589 40.000 0.65 0.00 36.46 3.02
2767 2859 2.389715 CTACTAGGAAGGGTGTGGGAG 58.610 57.143 0.00 0.00 0.00 4.30
2794 2886 3.553922 GCTATCCAGCCTAAGTGCTAGTG 60.554 52.174 0.00 0.00 42.37 2.74
2815 2907 1.089920 ACAATGCCTTCGCTGCTAAG 58.910 50.000 6.92 6.92 35.36 2.18
2834 2926 1.544691 AGCTCATTTTTCTGCTGCCAG 59.455 47.619 0.00 0.00 40.54 4.85
2861 2953 2.347322 GCCGCCTTAAACATGCCCA 61.347 57.895 0.00 0.00 0.00 5.36
2866 2958 1.838112 CCTTAAACATGCCCAGCTCA 58.162 50.000 0.00 0.00 0.00 4.26
2877 2969 1.892862 CCAGCTCATAGGCAGCAGC 60.893 63.158 0.00 0.00 39.56 5.25
2881 2973 0.250381 GCTCATAGGCAGCAGCTGAT 60.250 55.000 27.39 8.90 41.70 2.90
2963 3058 1.975407 GTTGGGGAGTCGACGGAGA 60.975 63.158 10.46 0.00 0.00 3.71
2972 3068 1.012841 GTCGACGGAGAGGTAACGAT 58.987 55.000 0.00 0.00 46.39 3.73
2988 3084 2.180276 ACGATGCTGGGAGTCTACTTT 58.820 47.619 0.00 0.00 0.00 2.66
2994 3090 1.810030 GGGAGTCTACTTTGCCGCG 60.810 63.158 0.00 0.00 0.00 6.46
3027 3123 0.717224 CGCATTTTGCATCAACAGCC 59.283 50.000 0.00 0.00 45.36 4.85
3099 3195 1.322538 CCACTATTGCCTTGGCCACC 61.323 60.000 3.88 0.00 0.00 4.61
3111 3207 4.803426 GCCACCTCAGCCGACTCG 62.803 72.222 0.00 0.00 0.00 4.18
3135 3231 1.409427 GGTCCTTCCAGTATCACCTCG 59.591 57.143 0.00 0.00 35.97 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 6.074034 CGAACGACACATGGTTATAATGCATA 60.074 38.462 0.00 0.00 0.00 3.14
82 83 1.365699 GGCGAACGACACATGGTTAT 58.634 50.000 0.00 0.00 0.00 1.89
153 154 4.072131 ACCAGCTGATTTCTTTTCGCTTA 58.928 39.130 17.39 0.00 0.00 3.09
158 159 2.353109 GCCCACCAGCTGATTTCTTTTC 60.353 50.000 17.39 0.00 0.00 2.29
371 372 1.202639 CCACCAGAGCGCCACATATAA 60.203 52.381 2.29 0.00 0.00 0.98
417 418 6.127730 CCCGAGAAACATTAAACTTGGCTTAT 60.128 38.462 0.00 0.00 33.82 1.73
428 429 5.856156 TGTTACTGACCCGAGAAACATTAA 58.144 37.500 0.00 0.00 0.00 1.40
469 470 9.132521 CATGATAGTGAATGGAAAAACTTCAAC 57.867 33.333 0.00 0.00 31.21 3.18
476 477 6.095860 CCAGCTCATGATAGTGAATGGAAAAA 59.904 38.462 0.00 0.00 37.28 1.94
484 485 3.495629 GCCATCCAGCTCATGATAGTGAA 60.496 47.826 0.00 0.00 0.00 3.18
498 499 4.711399 TCAGAATGTAATGAGCCATCCAG 58.289 43.478 0.00 0.00 37.40 3.86
555 556 6.677431 GCATGATGTTGAAACAAGAGAGGATC 60.677 42.308 0.00 0.00 43.03 3.36
572 573 0.901827 TAGACGTGTGGGCATGATGT 59.098 50.000 0.00 0.00 35.65 3.06
580 581 7.894376 TTTAGAAAAACTATAGACGTGTGGG 57.106 36.000 6.78 0.00 0.00 4.61
581 582 9.968743 GATTTTAGAAAAACTATAGACGTGTGG 57.031 33.333 6.78 0.00 0.00 4.17
593 594 8.564574 TGAACGCTACATGATTTTAGAAAAACT 58.435 29.630 0.00 0.00 0.00 2.66
594 595 8.627428 GTGAACGCTACATGATTTTAGAAAAAC 58.373 33.333 0.00 0.00 0.00 2.43
595 596 7.532546 CGTGAACGCTACATGATTTTAGAAAAA 59.467 33.333 0.00 0.00 0.00 1.94
596 597 7.012943 CGTGAACGCTACATGATTTTAGAAAA 58.987 34.615 0.00 0.00 0.00 2.29
597 598 6.401688 CCGTGAACGCTACATGATTTTAGAAA 60.402 38.462 0.00 0.00 38.18 2.52
598 599 5.062934 CCGTGAACGCTACATGATTTTAGAA 59.937 40.000 0.00 0.00 38.18 2.10
599 600 4.565166 CCGTGAACGCTACATGATTTTAGA 59.435 41.667 0.00 0.00 38.18 2.10
600 601 4.782195 GCCGTGAACGCTACATGATTTTAG 60.782 45.833 0.00 0.00 38.18 1.85
601 602 3.062909 GCCGTGAACGCTACATGATTTTA 59.937 43.478 0.00 0.00 38.18 1.52
602 603 2.159572 GCCGTGAACGCTACATGATTTT 60.160 45.455 0.00 0.00 38.18 1.82
603 604 1.396996 GCCGTGAACGCTACATGATTT 59.603 47.619 0.00 0.00 38.18 2.17
604 605 1.006832 GCCGTGAACGCTACATGATT 58.993 50.000 0.00 0.00 38.18 2.57
605 606 0.810031 GGCCGTGAACGCTACATGAT 60.810 55.000 0.00 0.00 38.18 2.45
606 607 1.447140 GGCCGTGAACGCTACATGA 60.447 57.895 0.00 0.00 38.18 3.07
607 608 2.798501 CGGCCGTGAACGCTACATG 61.799 63.158 19.50 0.00 38.18 3.21
608 609 2.508439 CGGCCGTGAACGCTACAT 60.508 61.111 19.50 0.00 38.18 2.29
609 610 3.620300 CTCGGCCGTGAACGCTACA 62.620 63.158 27.15 0.00 38.18 2.74
610 611 2.879462 CTCGGCCGTGAACGCTAC 60.879 66.667 27.15 0.00 38.18 3.58
611 612 3.047718 CTCTCGGCCGTGAACGCTA 62.048 63.158 27.96 7.54 38.18 4.26
612 613 4.421479 CTCTCGGCCGTGAACGCT 62.421 66.667 27.96 0.00 38.18 5.07
613 614 4.415332 TCTCTCGGCCGTGAACGC 62.415 66.667 27.96 0.00 38.18 4.84
614 615 2.202492 CTCTCTCGGCCGTGAACG 60.202 66.667 27.96 18.50 39.44 3.95
615 616 2.182030 CCTCTCTCGGCCGTGAAC 59.818 66.667 27.96 0.00 0.00 3.18
616 617 3.068691 CCCTCTCTCGGCCGTGAA 61.069 66.667 27.96 18.12 0.00 3.18
622 623 2.595009 AATTTCGGCCCTCTCTCGGC 62.595 60.000 0.00 0.00 46.29 5.54
623 624 0.811616 CAATTTCGGCCCTCTCTCGG 60.812 60.000 0.00 0.00 0.00 4.63
624 625 1.432270 GCAATTTCGGCCCTCTCTCG 61.432 60.000 0.00 0.00 0.00 4.04
625 626 1.098129 GGCAATTTCGGCCCTCTCTC 61.098 60.000 0.00 0.00 45.87 3.20
626 627 1.077429 GGCAATTTCGGCCCTCTCT 60.077 57.895 0.00 0.00 45.87 3.10
627 628 3.514417 GGCAATTTCGGCCCTCTC 58.486 61.111 0.00 0.00 45.87 3.20
644 645 3.070015 AGTTTGACAAAAGGGCCAGAATG 59.930 43.478 6.18 1.27 0.00 2.67
645 646 3.308401 AGTTTGACAAAAGGGCCAGAAT 58.692 40.909 6.18 0.00 0.00 2.40
646 647 2.745968 AGTTTGACAAAAGGGCCAGAA 58.254 42.857 6.18 0.00 0.00 3.02
647 648 2.452600 AGTTTGACAAAAGGGCCAGA 57.547 45.000 6.18 0.00 0.00 3.86
648 649 4.620982 CTTAAGTTTGACAAAAGGGCCAG 58.379 43.478 6.18 0.00 0.00 4.85
649 650 3.181470 GCTTAAGTTTGACAAAAGGGCCA 60.181 43.478 6.18 0.00 0.00 5.36
650 651 3.181470 TGCTTAAGTTTGACAAAAGGGCC 60.181 43.478 1.27 0.00 0.00 5.80
651 652 3.802139 GTGCTTAAGTTTGACAAAAGGGC 59.198 43.478 1.27 4.33 0.00 5.19
652 653 4.041723 CGTGCTTAAGTTTGACAAAAGGG 58.958 43.478 1.27 0.00 0.00 3.95
653 654 4.915704 TCGTGCTTAAGTTTGACAAAAGG 58.084 39.130 1.27 0.00 0.00 3.11
654 655 7.449934 AAATCGTGCTTAAGTTTGACAAAAG 57.550 32.000 1.27 0.00 0.00 2.27
655 656 7.820044 AAAATCGTGCTTAAGTTTGACAAAA 57.180 28.000 1.27 0.00 0.00 2.44
668 669 8.837389 GGGAGTAGAAAATATAAAATCGTGCTT 58.163 33.333 0.00 0.00 0.00 3.91
669 670 8.211629 AGGGAGTAGAAAATATAAAATCGTGCT 58.788 33.333 0.00 0.00 0.00 4.40
670 671 8.379457 AGGGAGTAGAAAATATAAAATCGTGC 57.621 34.615 0.00 0.00 0.00 5.34
671 672 8.989980 GGAGGGAGTAGAAAATATAAAATCGTG 58.010 37.037 0.00 0.00 0.00 4.35
672 673 7.871463 CGGAGGGAGTAGAAAATATAAAATCGT 59.129 37.037 0.00 0.00 0.00 3.73
673 674 7.871463 ACGGAGGGAGTAGAAAATATAAAATCG 59.129 37.037 0.00 0.00 0.00 3.34
674 675 9.557061 AACGGAGGGAGTAGAAAATATAAAATC 57.443 33.333 0.00 0.00 0.00 2.17
675 676 9.557061 GAACGGAGGGAGTAGAAAATATAAAAT 57.443 33.333 0.00 0.00 0.00 1.82
676 677 7.989170 GGAACGGAGGGAGTAGAAAATATAAAA 59.011 37.037 0.00 0.00 0.00 1.52
677 678 7.126115 TGGAACGGAGGGAGTAGAAAATATAAA 59.874 37.037 0.00 0.00 0.00 1.40
678 679 6.612456 TGGAACGGAGGGAGTAGAAAATATAA 59.388 38.462 0.00 0.00 0.00 0.98
679 680 6.138263 TGGAACGGAGGGAGTAGAAAATATA 58.862 40.000 0.00 0.00 0.00 0.86
680 681 4.966805 TGGAACGGAGGGAGTAGAAAATAT 59.033 41.667 0.00 0.00 0.00 1.28
681 682 4.355549 TGGAACGGAGGGAGTAGAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
682 683 3.178865 TGGAACGGAGGGAGTAGAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
683 684 2.612000 TGGAACGGAGGGAGTAGAAAA 58.388 47.619 0.00 0.00 0.00 2.29
684 685 2.314071 TGGAACGGAGGGAGTAGAAA 57.686 50.000 0.00 0.00 0.00 2.52
685 686 2.544844 ATGGAACGGAGGGAGTAGAA 57.455 50.000 0.00 0.00 0.00 2.10
686 687 3.675348 TTATGGAACGGAGGGAGTAGA 57.325 47.619 0.00 0.00 0.00 2.59
687 688 3.641906 ACATTATGGAACGGAGGGAGTAG 59.358 47.826 0.00 0.00 0.00 2.57
688 689 3.649843 ACATTATGGAACGGAGGGAGTA 58.350 45.455 0.00 0.00 0.00 2.59
689 690 2.478292 ACATTATGGAACGGAGGGAGT 58.522 47.619 0.00 0.00 0.00 3.85
690 691 3.641906 ACTACATTATGGAACGGAGGGAG 59.358 47.826 0.00 0.00 0.00 4.30
691 692 3.386726 CACTACATTATGGAACGGAGGGA 59.613 47.826 0.00 0.00 0.00 4.20
692 693 3.728845 CACTACATTATGGAACGGAGGG 58.271 50.000 0.00 0.00 0.00 4.30
693 694 3.131396 GCACTACATTATGGAACGGAGG 58.869 50.000 0.00 0.00 0.00 4.30
694 695 3.131396 GGCACTACATTATGGAACGGAG 58.869 50.000 0.00 0.00 0.00 4.63
695 696 2.769663 AGGCACTACATTATGGAACGGA 59.230 45.455 0.00 0.00 36.02 4.69
696 697 3.194005 AGGCACTACATTATGGAACGG 57.806 47.619 0.00 0.00 36.02 4.44
709 710 9.988815 GATTTCTCAGAAAATCTATAGGCACTA 57.011 33.333 3.35 0.00 42.12 2.74
710 711 8.489489 TGATTTCTCAGAAAATCTATAGGCACT 58.511 33.333 3.35 0.00 43.17 4.40
711 712 8.668510 TGATTTCTCAGAAAATCTATAGGCAC 57.331 34.615 3.35 0.00 43.17 5.01
712 713 9.685276 TTTGATTTCTCAGAAAATCTATAGGCA 57.315 29.630 3.35 0.00 43.17 4.75
713 714 9.943163 GTTTGATTTCTCAGAAAATCTATAGGC 57.057 33.333 3.35 0.00 43.17 3.93
718 719 9.683069 GCAAAGTTTGATTTCTCAGAAAATCTA 57.317 29.630 19.82 0.00 43.17 1.98
719 720 8.199449 TGCAAAGTTTGATTTCTCAGAAAATCT 58.801 29.630 19.82 0.00 43.17 2.40
720 721 8.356533 TGCAAAGTTTGATTTCTCAGAAAATC 57.643 30.769 19.82 3.62 43.10 2.17
721 722 8.721019 TTGCAAAGTTTGATTTCTCAGAAAAT 57.279 26.923 19.82 0.00 31.68 1.82
722 723 8.442384 GTTTGCAAAGTTTGATTTCTCAGAAAA 58.558 29.630 19.82 0.00 31.68 2.29
723 724 7.818930 AGTTTGCAAAGTTTGATTTCTCAGAAA 59.181 29.630 19.82 1.30 31.68 2.52
724 725 7.322664 AGTTTGCAAAGTTTGATTTCTCAGAA 58.677 30.769 19.82 0.00 31.68 3.02
725 726 6.866480 AGTTTGCAAAGTTTGATTTCTCAGA 58.134 32.000 19.82 0.00 31.68 3.27
726 727 7.529880 AAGTTTGCAAAGTTTGATTTCTCAG 57.470 32.000 23.54 0.00 31.68 3.35
727 728 7.903995 AAAGTTTGCAAAGTTTGATTTCTCA 57.096 28.000 33.55 3.64 39.40 3.27
736 737 5.861222 CTTGGTCAAAGTTTGCAAAGTTT 57.139 34.783 30.47 30.47 41.01 2.66
823 824 9.935241 GTGTGAACCATATATCAGTAGATTCAT 57.065 33.333 0.00 0.00 35.67 2.57
824 825 9.147732 AGTGTGAACCATATATCAGTAGATTCA 57.852 33.333 0.00 0.00 35.67 2.57
825 826 9.632807 GAGTGTGAACCATATATCAGTAGATTC 57.367 37.037 0.00 0.00 35.67 2.52
826 827 9.373450 AGAGTGTGAACCATATATCAGTAGATT 57.627 33.333 0.00 0.00 35.67 2.40
827 828 8.948401 AGAGTGTGAACCATATATCAGTAGAT 57.052 34.615 0.00 0.00 38.29 1.98
828 829 9.508642 CTAGAGTGTGAACCATATATCAGTAGA 57.491 37.037 0.00 0.00 0.00 2.59
829 830 9.508642 TCTAGAGTGTGAACCATATATCAGTAG 57.491 37.037 0.00 0.00 0.00 2.57
831 832 8.801299 CATCTAGAGTGTGAACCATATATCAGT 58.199 37.037 0.00 0.00 0.00 3.41
832 833 8.801299 ACATCTAGAGTGTGAACCATATATCAG 58.199 37.037 0.00 0.00 0.00 2.90
833 834 8.712228 ACATCTAGAGTGTGAACCATATATCA 57.288 34.615 0.00 0.00 0.00 2.15
856 857 9.757227 CCAAGTTTGTGGAGAAAAATATTTACA 57.243 29.630 0.01 0.00 41.65 2.41
857 858 9.758651 ACCAAGTTTGTGGAGAAAAATATTTAC 57.241 29.630 0.01 0.00 41.65 2.01
858 859 9.974980 GACCAAGTTTGTGGAGAAAAATATTTA 57.025 29.630 0.01 0.00 41.65 1.40
859 860 8.482128 TGACCAAGTTTGTGGAGAAAAATATTT 58.518 29.630 0.00 0.00 41.65 1.40
860 861 8.017418 TGACCAAGTTTGTGGAGAAAAATATT 57.983 30.769 0.00 0.00 41.65 1.28
861 862 7.595819 TGACCAAGTTTGTGGAGAAAAATAT 57.404 32.000 0.00 0.00 41.65 1.28
862 863 7.411486 TTGACCAAGTTTGTGGAGAAAAATA 57.589 32.000 0.00 0.00 41.65 1.40
863 864 5.930837 TGACCAAGTTTGTGGAGAAAAAT 57.069 34.783 0.00 0.00 41.65 1.82
864 865 5.730296 TTGACCAAGTTTGTGGAGAAAAA 57.270 34.783 0.00 0.00 41.65 1.94
865 866 5.245075 ACTTTGACCAAGTTTGTGGAGAAAA 59.755 36.000 0.00 0.00 43.89 2.29
866 867 4.770010 ACTTTGACCAAGTTTGTGGAGAAA 59.230 37.500 0.00 0.00 43.89 2.52
867 868 4.340617 ACTTTGACCAAGTTTGTGGAGAA 58.659 39.130 0.00 0.00 43.89 2.87
868 869 3.963129 ACTTTGACCAAGTTTGTGGAGA 58.037 40.909 0.00 0.00 43.89 3.71
878 879 6.034898 GTCAAACATCACAAACTTTGACCAAG 59.965 38.462 8.55 0.00 43.35 3.61
879 880 5.866633 GTCAAACATCACAAACTTTGACCAA 59.133 36.000 8.55 0.00 43.35 3.67
880 881 5.406649 GTCAAACATCACAAACTTTGACCA 58.593 37.500 8.55 0.00 43.35 4.02
881 882 5.949233 GTCAAACATCACAAACTTTGACC 57.051 39.130 8.55 0.00 43.35 4.02
882 883 7.581011 AAAGTCAAACATCACAAACTTTGAC 57.419 32.000 8.55 12.19 46.84 3.18
883 884 8.600449 AAAAAGTCAAACATCACAAACTTTGA 57.400 26.923 8.55 0.00 37.12 2.69
910 911 8.188139 CCGTTCCATAATGTAGTGCTTATTTTT 58.812 33.333 0.00 0.00 0.00 1.94
911 912 7.554835 TCCGTTCCATAATGTAGTGCTTATTTT 59.445 33.333 0.00 0.00 0.00 1.82
912 913 7.051623 TCCGTTCCATAATGTAGTGCTTATTT 58.948 34.615 0.00 0.00 0.00 1.40
913 914 6.588204 TCCGTTCCATAATGTAGTGCTTATT 58.412 36.000 0.00 0.00 0.00 1.40
914 915 6.169557 TCCGTTCCATAATGTAGTGCTTAT 57.830 37.500 0.00 0.00 0.00 1.73
915 916 5.128171 ACTCCGTTCCATAATGTAGTGCTTA 59.872 40.000 0.00 0.00 0.00 3.09
916 917 4.081087 ACTCCGTTCCATAATGTAGTGCTT 60.081 41.667 0.00 0.00 0.00 3.91
917 918 3.451178 ACTCCGTTCCATAATGTAGTGCT 59.549 43.478 0.00 0.00 0.00 4.40
918 919 3.793559 ACTCCGTTCCATAATGTAGTGC 58.206 45.455 0.00 0.00 0.00 4.40
919 920 6.745116 TGATACTCCGTTCCATAATGTAGTG 58.255 40.000 0.00 0.00 0.00 2.74
920 921 6.776116 TCTGATACTCCGTTCCATAATGTAGT 59.224 38.462 0.00 0.00 0.00 2.73
921 922 7.215719 TCTGATACTCCGTTCCATAATGTAG 57.784 40.000 0.00 0.00 0.00 2.74
922 923 7.670140 AGATCTGATACTCCGTTCCATAATGTA 59.330 37.037 0.00 0.00 0.00 2.29
923 924 6.495181 AGATCTGATACTCCGTTCCATAATGT 59.505 38.462 0.00 0.00 0.00 2.71
924 925 6.929625 AGATCTGATACTCCGTTCCATAATG 58.070 40.000 0.00 0.00 0.00 1.90
925 926 6.951198 AGAGATCTGATACTCCGTTCCATAAT 59.049 38.462 0.00 0.00 34.13 1.28
926 927 6.307776 AGAGATCTGATACTCCGTTCCATAA 58.692 40.000 0.00 0.00 34.13 1.90
927 928 5.882040 AGAGATCTGATACTCCGTTCCATA 58.118 41.667 0.00 0.00 34.13 2.74
928 929 4.735369 AGAGATCTGATACTCCGTTCCAT 58.265 43.478 0.00 0.00 34.13 3.41
929 930 4.138290 GAGAGATCTGATACTCCGTTCCA 58.862 47.826 0.00 0.00 34.13 3.53
930 931 3.187637 CGAGAGATCTGATACTCCGTTCC 59.812 52.174 0.00 0.00 34.13 3.62
931 932 3.187637 CCGAGAGATCTGATACTCCGTTC 59.812 52.174 0.00 6.70 34.13 3.95
932 933 3.142951 CCGAGAGATCTGATACTCCGTT 58.857 50.000 0.00 0.63 34.13 4.44
933 934 2.551287 CCCGAGAGATCTGATACTCCGT 60.551 54.545 0.00 1.14 34.13 4.69
934 935 2.080693 CCCGAGAGATCTGATACTCCG 58.919 57.143 0.00 14.08 34.13 4.63
935 936 3.149005 ACCCGAGAGATCTGATACTCC 57.851 52.381 0.00 0.00 34.13 3.85
936 937 3.687698 GCTACCCGAGAGATCTGATACTC 59.312 52.174 0.00 0.00 0.00 2.59
937 938 3.560453 GGCTACCCGAGAGATCTGATACT 60.560 52.174 0.00 0.00 0.00 2.12
938 939 2.750712 GGCTACCCGAGAGATCTGATAC 59.249 54.545 0.00 0.00 0.00 2.24
1077 1091 1.985116 GGAGAAGAGGCGGAGGTGT 60.985 63.158 0.00 0.00 0.00 4.16
1113 1127 3.664025 CTCGGCCATGAAGTGCGGA 62.664 63.158 2.24 0.00 35.80 5.54
2008 2022 1.068474 GTCACCATGTTCGTCTTCCG 58.932 55.000 0.00 0.00 38.13 4.30
2043 2057 1.558756 CTCTCCACAAAGATGGCCTCT 59.441 52.381 3.32 0.95 39.85 3.69
2052 2066 5.152623 TCAGAATGTACCTCTCCACAAAG 57.847 43.478 0.00 0.00 37.40 2.77
2088 2102 3.408501 CTCGAGGAGCTCAGGCACG 62.409 68.421 17.19 12.56 41.70 5.34
2126 2140 3.980775 CCTGTTTTATGTTGTGCCTTTCG 59.019 43.478 0.00 0.00 0.00 3.46
2213 2227 4.113354 GACGGAGGAAGTGTTGATGTATC 58.887 47.826 0.00 0.00 0.00 2.24
2216 2230 1.002087 GGACGGAGGAAGTGTTGATGT 59.998 52.381 0.00 0.00 0.00 3.06
2217 2231 1.676014 GGGACGGAGGAAGTGTTGATG 60.676 57.143 0.00 0.00 0.00 3.07
2219 2233 0.761323 TGGGACGGAGGAAGTGTTGA 60.761 55.000 0.00 0.00 0.00 3.18
2220 2234 0.324943 ATGGGACGGAGGAAGTGTTG 59.675 55.000 0.00 0.00 0.00 3.33
2221 2235 1.946984 TATGGGACGGAGGAAGTGTT 58.053 50.000 0.00 0.00 0.00 3.32
2222 2236 1.946984 TTATGGGACGGAGGAAGTGT 58.053 50.000 0.00 0.00 0.00 3.55
2223 2237 3.386726 TGTATTATGGGACGGAGGAAGTG 59.613 47.826 0.00 0.00 0.00 3.16
2227 2258 3.895656 CTCTTGTATTATGGGACGGAGGA 59.104 47.826 0.00 0.00 0.00 3.71
2257 2288 5.813080 AAAACGCTCTTGTATTATGGGAC 57.187 39.130 0.00 0.00 0.00 4.46
2258 2289 5.941058 TCAAAAACGCTCTTGTATTATGGGA 59.059 36.000 0.00 0.00 0.00 4.37
2261 2292 7.298122 AGTGTCAAAAACGCTCTTGTATTATG 58.702 34.615 0.00 0.00 45.69 1.90
2262 2293 7.435068 AGTGTCAAAAACGCTCTTGTATTAT 57.565 32.000 0.00 0.00 45.69 1.28
2263 2294 6.854496 AGTGTCAAAAACGCTCTTGTATTA 57.146 33.333 0.00 0.00 45.69 0.98
2264 2295 5.751243 AGTGTCAAAAACGCTCTTGTATT 57.249 34.783 0.00 0.00 45.69 1.89
2265 2296 5.989777 ACTAGTGTCAAAAACGCTCTTGTAT 59.010 36.000 0.00 0.00 45.69 2.29
2266 2297 5.233476 CACTAGTGTCAAAAACGCTCTTGTA 59.767 40.000 15.06 0.00 45.69 2.41
2267 2298 4.034048 CACTAGTGTCAAAAACGCTCTTGT 59.966 41.667 15.06 0.00 45.69 3.16
2268 2299 4.034048 ACACTAGTGTCAAAAACGCTCTTG 59.966 41.667 22.95 0.00 45.69 3.02
2269 2300 4.189231 ACACTAGTGTCAAAAACGCTCTT 58.811 39.130 22.95 0.00 45.69 2.85
2270 2301 3.793559 ACACTAGTGTCAAAAACGCTCT 58.206 40.909 22.95 0.00 45.69 4.09
2283 2314 4.186926 CAACCATGGATCAGACACTAGTG 58.813 47.826 21.47 21.44 0.00 2.74
2284 2315 3.840666 ACAACCATGGATCAGACACTAGT 59.159 43.478 21.47 0.00 0.00 2.57
2301 2332 2.159114 ACTCCACACAAAATGCACAACC 60.159 45.455 0.00 0.00 0.00 3.77
2305 2336 2.284952 GCAAACTCCACACAAAATGCAC 59.715 45.455 0.00 0.00 33.00 4.57
2326 2357 6.534059 CATAATTGTAAGTCGGTCTGTGTTG 58.466 40.000 0.00 0.00 0.00 3.33
2331 2362 5.351465 AGTTGCATAATTGTAAGTCGGTCTG 59.649 40.000 0.00 0.00 0.00 3.51
2339 2370 9.450807 GCCAGTTAATAGTTGCATAATTGTAAG 57.549 33.333 0.00 0.00 0.00 2.34
2366 2397 7.221452 CGATGGGATTTGAAAATTCAGATGAAC 59.779 37.037 4.13 0.00 38.61 3.18
2371 2402 6.588719 AACGATGGGATTTGAAAATTCAGA 57.411 33.333 0.00 0.00 38.61 3.27
2386 2417 3.997021 GGATAGTAGATGCAAACGATGGG 59.003 47.826 0.00 0.00 0.00 4.00
2394 2425 2.364324 GGTGTCGGGATAGTAGATGCAA 59.636 50.000 0.00 0.00 0.00 4.08
2397 2428 2.991434 CGGTGTCGGGATAGTAGATG 57.009 55.000 0.00 0.00 0.00 2.90
2416 2447 8.669243 CATTCAGTATCTTTCTTAAACCTGACC 58.331 37.037 0.00 0.00 0.00 4.02
2421 2452 7.094377 TGCCACATTCAGTATCTTTCTTAAACC 60.094 37.037 0.00 0.00 0.00 3.27
2434 2465 4.019771 TCCTGTGTTATGCCACATTCAGTA 60.020 41.667 0.00 0.00 43.91 2.74
2473 2560 2.838202 TGAACATGGTAACTCTCCCTCC 59.162 50.000 0.00 0.00 37.61 4.30
2541 2629 6.491714 TCCCTCTAGGATCTCATCTTTTTG 57.508 41.667 0.00 0.00 40.93 2.44
2547 2636 4.159557 AGCTTTCCCTCTAGGATCTCATC 58.840 47.826 0.00 0.00 46.94 2.92
2581 2670 4.513692 TGGTTCTGATCAATCGAAAAACGT 59.486 37.500 0.00 0.00 43.13 3.99
2587 2676 6.816134 TGATTTTGGTTCTGATCAATCGAA 57.184 33.333 0.00 0.00 0.00 3.71
2602 2691 7.892609 ACATGATCATGGTGATATGATTTTGG 58.107 34.615 33.31 8.15 45.30 3.28
2615 2704 3.816994 CTGATGTGGACATGATCATGGT 58.183 45.455 33.31 21.37 42.91 3.55
2624 2713 5.045012 ACATATTCTGCTGATGTGGACAT 57.955 39.130 0.00 0.00 39.70 3.06
2666 2758 3.449377 TGTATAAGATTCCTGCCGTGTGA 59.551 43.478 0.00 0.00 0.00 3.58
2672 2764 5.979517 GCATTTTGTGTATAAGATTCCTGCC 59.020 40.000 0.00 0.00 0.00 4.85
2674 2766 7.168637 GCATGCATTTTGTGTATAAGATTCCTG 59.831 37.037 14.21 0.00 31.44 3.86
2715 2807 3.218453 CTCTGAATCGAGCTAGAGGGAA 58.782 50.000 2.19 0.00 34.46 3.97
2745 2837 1.007963 CCCACACCCTTCCTAGTAGGA 59.992 57.143 15.33 15.33 44.10 2.94
2746 2838 1.007963 TCCCACACCCTTCCTAGTAGG 59.992 57.143 10.24 10.24 36.46 3.18
2754 2846 1.679898 CTGGACTCCCACACCCTTC 59.320 63.158 0.00 0.00 37.58 3.46
2789 2881 2.604914 CAGCGAAGGCATTGTACACTAG 59.395 50.000 0.00 0.00 43.41 2.57
2794 2886 1.651987 TAGCAGCGAAGGCATTGTAC 58.348 50.000 0.00 0.00 43.41 2.90
2815 2907 1.403780 CCTGGCAGCAGAAAAATGAGC 60.404 52.381 9.56 0.00 0.00 4.26
2820 2912 3.458653 GCCCTGGCAGCAGAAAAA 58.541 55.556 9.56 0.00 41.49 1.94
2844 2936 1.809207 CTGGGCATGTTTAAGGCGG 59.191 57.895 0.00 0.00 0.00 6.13
2845 2937 1.139520 GCTGGGCATGTTTAAGGCG 59.860 57.895 0.00 0.00 0.00 5.52
2852 2944 3.815133 CCTATGAGCTGGGCATGTT 57.185 52.632 0.00 0.00 0.00 2.71
2861 2953 1.146485 CAGCTGCTGCCTATGAGCT 59.854 57.895 17.73 5.69 42.59 4.09
2866 2958 1.347050 CTGGTATCAGCTGCTGCCTAT 59.653 52.381 24.38 15.10 40.80 2.57
2877 2969 1.751351 TCCGTCTTGAGCTGGTATCAG 59.249 52.381 0.00 0.00 43.64 2.90
2881 2973 0.541063 TGGTCCGTCTTGAGCTGGTA 60.541 55.000 0.00 0.00 33.93 3.25
2963 3058 0.824759 GACTCCCAGCATCGTTACCT 59.175 55.000 0.00 0.00 0.00 3.08
2972 3068 0.324943 GGCAAAGTAGACTCCCAGCA 59.675 55.000 0.00 0.00 0.00 4.41
2988 3084 2.048597 CAGAACTGGTACGCGGCA 60.049 61.111 12.47 0.00 0.00 5.69
2994 3090 1.156736 AATGCGCACAGAACTGGTAC 58.843 50.000 14.90 0.00 34.19 3.34
3027 3123 0.321671 ACATCCTGTCGGTTGACCTG 59.678 55.000 0.00 0.00 44.86 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.