Multiple sequence alignment - TraesCS2B01G555900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G555900 chr2B 100.000 2415 0 0 1 2415 751187926 751185512 0.000000e+00 4460.0
1 TraesCS2B01G555900 chr2B 100.000 472 0 0 2670 3141 751185257 751184786 0.000000e+00 872.0
2 TraesCS2B01G555900 chr2B 96.774 62 2 0 1023 1084 750460627 750460688 1.540000e-18 104.0
3 TraesCS2B01G555900 chr2A 89.655 2523 81 54 1 2415 745786594 745784144 0.000000e+00 3048.0
4 TraesCS2B01G555900 chr2A 98.077 312 4 1 2710 3021 745784064 745783755 2.760000e-150 542.0
5 TraesCS2B01G555900 chr2A 100.000 108 0 0 3034 3141 745783539 745783432 1.910000e-47 200.0
6 TraesCS2B01G555900 chr2A 84.211 76 6 3 1333 1402 745785330 745785255 5.620000e-08 69.4
7 TraesCS2B01G555900 chr2A 100.000 34 0 0 2678 2711 745784111 745784078 2.620000e-06 63.9
8 TraesCS2B01G555900 chr2A 100.000 32 0 0 226 257 745786397 745786366 3.380000e-05 60.2
9 TraesCS2B01G555900 chr7A 88.994 845 20 14 732 1543 645067781 645068585 0.000000e+00 977.0
10 TraesCS2B01G555900 chr7A 92.727 550 13 7 1876 2415 645070365 645070897 0.000000e+00 769.0
11 TraesCS2B01G555900 chr7A 96.154 338 7 5 2710 3047 645070977 645071308 5.920000e-152 547.0
12 TraesCS2B01G555900 chr7A 94.400 250 9 4 1557 1803 645068667 645068914 2.290000e-101 379.0
13 TraesCS2B01G555900 chr7A 96.629 178 3 1 83 257 645067314 645067491 3.060000e-75 292.0
14 TraesCS2B01G555900 chr7A 95.597 159 3 1 380 534 645067591 645067749 5.200000e-63 252.0
15 TraesCS2B01G555900 chr7A 100.000 111 0 0 3031 3141 645071326 645071436 4.110000e-49 206.0
16 TraesCS2B01G555900 chr7A 98.276 58 1 0 44 101 645067239 645067296 5.540000e-18 102.0
17 TraesCS2B01G555900 chr7A 100.000 54 0 0 253 306 645067517 645067570 1.990000e-17 100.0
18 TraesCS2B01G555900 chr7A 85.714 70 4 3 1333 1396 645068288 645068357 5.620000e-08 69.4
19 TraesCS2B01G555900 chr7A 97.297 37 1 0 2675 2711 645070927 645070963 2.620000e-06 63.9
20 TraesCS2B01G555900 chr2D 100.000 29 0 0 1326 1354 616233256 616233284 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G555900 chr2B 751184786 751187926 3140 True 2666.000000 4460 100.000000 1 3141 2 chr2B.!!$R1 3140
1 TraesCS2B01G555900 chr2A 745783432 745786594 3162 True 663.916667 3048 95.323833 1 3141 6 chr2A.!!$R1 3140
2 TraesCS2B01G555900 chr7A 645067239 645071436 4197 False 341.572727 977 95.071636 44 3141 11 chr7A.!!$F1 3097

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
977 1121 0.178926 TCCTCCCACCAACTTCCGTA 60.179 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2895 4572 0.171903 AACATAACGTCGACCGAGGG 59.828 55.0 10.58 0.0 40.7 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
395 482 0.680061 ACCTGGAACCTTGTCGAGAC 59.320 55.000 0.00 0.00 0.00 3.36
664 779 3.339042 CATGGGATGCCCTGACCT 58.661 61.111 2.14 0.00 45.70 3.85
665 780 1.152819 CATGGGATGCCCTGACCTG 60.153 63.158 2.14 0.00 45.70 4.00
666 781 1.308128 ATGGGATGCCCTGACCTGA 60.308 57.895 0.00 0.00 45.70 3.86
667 782 0.920763 ATGGGATGCCCTGACCTGAA 60.921 55.000 0.00 0.00 45.70 3.02
977 1121 0.178926 TCCTCCCACCAACTTCCGTA 60.179 55.000 0.00 0.00 0.00 4.02
978 1122 0.249398 CCTCCCACCAACTTCCGTAG 59.751 60.000 0.00 0.00 0.00 3.51
991 1135 2.673114 CCGTAGGCGAGCGCAAAAA 61.673 57.895 17.16 0.00 46.14 1.94
994 1138 2.329614 TAGGCGAGCGCAAAAACCC 61.330 57.895 17.16 0.31 44.11 4.11
995 1139 4.717629 GGCGAGCGCAAAAACCCC 62.718 66.667 17.16 0.00 44.11 4.95
996 1140 3.972276 GCGAGCGCAAAAACCCCA 61.972 61.111 11.47 0.00 41.49 4.96
1092 1236 1.986413 CCTCCTCTCCACCAAGGTG 59.014 63.158 12.29 12.29 45.02 4.00
1113 1257 2.041265 TGGGGCCTCCTCTCCTTC 59.959 66.667 0.00 0.00 36.20 3.46
1243 1399 2.261671 CGGAGGACACCAAGGTCG 59.738 66.667 0.00 0.00 38.70 4.79
1244 1400 2.571216 CGGAGGACACCAAGGTCGT 61.571 63.158 0.00 0.00 38.70 4.34
1245 1401 1.292541 GGAGGACACCAAGGTCGTC 59.707 63.158 7.31 7.31 46.57 4.20
1269 1425 3.636231 CTCCTCCCGGCCAACACA 61.636 66.667 2.24 0.00 0.00 3.72
1545 1774 1.293924 TCTACGCTCAGGTACTACGC 58.706 55.000 0.00 0.00 36.02 4.42
1546 1775 1.134580 TCTACGCTCAGGTACTACGCT 60.135 52.381 0.00 0.00 36.02 5.07
1547 1776 1.003759 CTACGCTCAGGTACTACGCTG 60.004 57.143 0.00 0.00 36.02 5.18
1549 1778 0.663688 CGCTCAGGTACTACGCTGAT 59.336 55.000 0.77 0.00 36.02 2.90
1550 1779 1.065701 CGCTCAGGTACTACGCTGATT 59.934 52.381 0.77 0.00 36.02 2.57
1551 1780 2.289820 CGCTCAGGTACTACGCTGATTA 59.710 50.000 0.77 0.00 36.02 1.75
1552 1781 3.242969 CGCTCAGGTACTACGCTGATTAA 60.243 47.826 0.77 0.00 36.02 1.40
1553 1782 4.556898 CGCTCAGGTACTACGCTGATTAAT 60.557 45.833 0.77 0.00 36.02 1.40
1554 1783 4.918583 GCTCAGGTACTACGCTGATTAATC 59.081 45.833 8.60 8.60 36.02 1.75
1598 1843 3.568538 CGCTTCTTGCTTGTTTGCTTAT 58.431 40.909 0.00 0.00 40.11 1.73
1599 1844 3.362831 CGCTTCTTGCTTGTTTGCTTATG 59.637 43.478 0.00 0.00 40.11 1.90
1600 1845 4.301628 GCTTCTTGCTTGTTTGCTTATGT 58.698 39.130 0.00 0.00 38.95 2.29
1601 1846 5.460646 GCTTCTTGCTTGTTTGCTTATGTA 58.539 37.500 0.00 0.00 38.95 2.29
1602 1847 5.920273 GCTTCTTGCTTGTTTGCTTATGTAA 59.080 36.000 0.00 0.00 38.95 2.41
1614 1861 9.796120 TGTTTGCTTATGTAATAATTAACCTGC 57.204 29.630 0.00 0.00 38.29 4.85
1638 1885 0.320771 TGCGGCCTTCTTCTCTGTTC 60.321 55.000 0.00 0.00 0.00 3.18
1681 1928 2.557924 TGACAAGATTGGCACCATCAAC 59.442 45.455 0.00 0.00 42.34 3.18
1757 2004 0.678048 GAGGTGCATCCAGGTGGTTC 60.678 60.000 0.00 0.00 39.02 3.62
1812 2059 4.821589 CCGCCCTCGAGCCAAGAC 62.822 72.222 6.99 0.00 38.10 3.01
1813 2060 3.764466 CGCCCTCGAGCCAAGACT 61.764 66.667 6.99 0.00 38.10 3.24
1814 2061 2.125350 GCCCTCGAGCCAAGACTG 60.125 66.667 6.99 0.00 0.00 3.51
1815 2062 2.948720 GCCCTCGAGCCAAGACTGT 61.949 63.158 6.99 0.00 0.00 3.55
1816 2063 1.079543 CCCTCGAGCCAAGACTGTG 60.080 63.158 6.99 0.00 0.00 3.66
1817 2064 1.079543 CCTCGAGCCAAGACTGTGG 60.080 63.158 6.99 0.00 42.05 4.17
1818 2065 1.668294 CTCGAGCCAAGACTGTGGT 59.332 57.895 0.00 0.00 41.12 4.16
1819 2066 0.389166 CTCGAGCCAAGACTGTGGTC 60.389 60.000 0.00 0.00 41.12 4.02
1844 2091 1.227853 ACCACAACCCTGAGCGTTC 60.228 57.895 0.00 0.00 0.00 3.95
1870 2117 1.081556 TCGAACATTGCCGGATCGTG 61.082 55.000 5.05 0.00 35.20 4.35
1950 3602 2.352960 GTCTCAATGCCCTCAATCGAAC 59.647 50.000 0.00 0.00 0.00 3.95
1951 3603 2.237143 TCTCAATGCCCTCAATCGAACT 59.763 45.455 0.00 0.00 0.00 3.01
2071 3723 1.153881 GGTAGAGGCGTCCGTCAAC 60.154 63.158 2.06 0.00 0.00 3.18
2079 3731 1.008194 CGTCCGTCAACGAGTGGAA 60.008 57.895 3.71 0.00 45.37 3.53
2099 3757 1.739562 GACTCTGGCAAGTCGGCTG 60.740 63.158 11.98 0.00 41.89 4.85
2130 3788 3.195698 GCCCGTGAAGATGCGGTC 61.196 66.667 0.00 0.00 45.91 4.79
2155 3813 3.202829 GACTAGATCGAGGTGAGGTCT 57.797 52.381 7.79 0.00 0.00 3.85
2156 3814 2.875933 GACTAGATCGAGGTGAGGTCTG 59.124 54.545 7.79 0.00 0.00 3.51
2157 3815 2.240160 ACTAGATCGAGGTGAGGTCTGT 59.760 50.000 7.79 0.00 0.00 3.41
2158 3816 1.468985 AGATCGAGGTGAGGTCTGTG 58.531 55.000 0.00 0.00 0.00 3.66
2159 3817 0.457851 GATCGAGGTGAGGTCTGTGG 59.542 60.000 0.00 0.00 0.00 4.17
2160 3818 1.608717 ATCGAGGTGAGGTCTGTGGC 61.609 60.000 0.00 0.00 0.00 5.01
2161 3819 2.665603 GAGGTGAGGTCTGTGGCC 59.334 66.667 0.00 0.00 0.00 5.36
2162 3820 3.302347 GAGGTGAGGTCTGTGGCCG 62.302 68.421 0.00 0.00 0.00 6.13
2166 3824 4.459089 GAGGTCTGTGGCCGCCTC 62.459 72.222 15.15 13.34 40.39 4.70
2168 3826 4.767255 GGTCTGTGGCCGCCTCTG 62.767 72.222 15.15 11.31 0.00 3.35
2301 3963 6.872547 GGAACTATTATTAGCTACCCCTTTCG 59.127 42.308 0.00 0.00 0.00 3.46
2335 3997 3.905968 TCCGATCATGTACTGGGAACTA 58.094 45.455 0.00 0.00 0.00 2.24
2895 4572 7.930325 ACTTAGTCCTAACTGTTTTCTACCAAC 59.070 37.037 0.00 0.00 36.92 3.77
2925 4602 3.181534 CGACGTTATGTTGTGATCCACAC 60.182 47.826 0.00 0.00 44.47 3.82
2985 4662 4.571919 GGTGCTAAATACAGTACACACCA 58.428 43.478 0.00 0.00 44.50 4.17
2986 4663 4.998672 GGTGCTAAATACAGTACACACCAA 59.001 41.667 0.00 0.00 44.50 3.67
2990 4667 6.373216 TGCTAAATACAGTACACACCAATTCC 59.627 38.462 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
395 482 1.227764 CCCGTCCATGATCCAGCAG 60.228 63.158 0.00 0.00 0.00 4.24
559 650 4.828925 GAGACGGCTGGCCTGCTC 62.829 72.222 30.65 22.00 0.00 4.26
562 653 4.154347 GAGGAGACGGCTGGCCTG 62.154 72.222 2.59 4.26 0.00 4.85
565 656 3.708220 CTTCGAGGAGACGGCTGGC 62.708 68.421 0.00 0.00 0.00 4.85
597 688 0.238553 GGTTTCTGCTGGTCGCTTTC 59.761 55.000 0.00 0.00 40.11 2.62
598 689 0.179018 AGGTTTCTGCTGGTCGCTTT 60.179 50.000 0.00 0.00 40.11 3.51
599 690 0.603975 GAGGTTTCTGCTGGTCGCTT 60.604 55.000 0.00 0.00 40.11 4.68
600 691 1.004440 GAGGTTTCTGCTGGTCGCT 60.004 57.895 0.00 0.00 40.11 4.93
601 692 0.674895 ATGAGGTTTCTGCTGGTCGC 60.675 55.000 0.00 0.00 39.77 5.19
605 696 0.392193 AGCGATGAGGTTTCTGCTGG 60.392 55.000 0.00 0.00 0.00 4.85
650 765 1.077429 GTTCAGGTCAGGGCATCCC 60.077 63.158 0.00 0.00 45.90 3.85
651 766 1.077429 GGTTCAGGTCAGGGCATCC 60.077 63.158 0.00 0.00 0.00 3.51
652 767 0.329596 AAGGTTCAGGTCAGGGCATC 59.670 55.000 0.00 0.00 0.00 3.91
653 768 0.329596 GAAGGTTCAGGTCAGGGCAT 59.670 55.000 0.00 0.00 0.00 4.40
654 769 0.768221 AGAAGGTTCAGGTCAGGGCA 60.768 55.000 0.00 0.00 0.00 5.36
655 770 0.402121 AAGAAGGTTCAGGTCAGGGC 59.598 55.000 0.00 0.00 0.00 5.19
656 771 2.887152 CAAAAGAAGGTTCAGGTCAGGG 59.113 50.000 0.00 0.00 0.00 4.45
657 772 3.565902 GTCAAAAGAAGGTTCAGGTCAGG 59.434 47.826 0.00 0.00 0.00 3.86
658 773 3.565902 GGTCAAAAGAAGGTTCAGGTCAG 59.434 47.826 0.00 0.00 0.00 3.51
659 774 3.551846 GGTCAAAAGAAGGTTCAGGTCA 58.448 45.455 0.00 0.00 0.00 4.02
660 775 2.548480 CGGTCAAAAGAAGGTTCAGGTC 59.452 50.000 0.00 0.00 0.00 3.85
661 776 2.572290 CGGTCAAAAGAAGGTTCAGGT 58.428 47.619 0.00 0.00 0.00 4.00
662 777 1.266989 GCGGTCAAAAGAAGGTTCAGG 59.733 52.381 0.00 0.00 0.00 3.86
663 778 1.266989 GGCGGTCAAAAGAAGGTTCAG 59.733 52.381 0.00 0.00 0.00 3.02
664 779 1.314730 GGCGGTCAAAAGAAGGTTCA 58.685 50.000 0.00 0.00 0.00 3.18
665 780 0.596577 GGGCGGTCAAAAGAAGGTTC 59.403 55.000 0.00 0.00 0.00 3.62
666 781 1.170290 CGGGCGGTCAAAAGAAGGTT 61.170 55.000 0.00 0.00 0.00 3.50
667 782 1.599797 CGGGCGGTCAAAAGAAGGT 60.600 57.895 0.00 0.00 0.00 3.50
904 1029 1.453762 ATAGAGGGACGTACGCAGCC 61.454 60.000 16.72 14.18 0.00 4.85
905 1030 1.233019 TATAGAGGGACGTACGCAGC 58.767 55.000 16.72 4.93 0.00 5.25
906 1031 3.072211 TGATATAGAGGGACGTACGCAG 58.928 50.000 16.72 0.00 0.00 5.18
977 1121 3.670377 GGGTTTTTGCGCTCGCCT 61.670 61.111 9.73 0.00 41.09 5.52
978 1122 4.717629 GGGGTTTTTGCGCTCGCC 62.718 66.667 9.73 8.07 41.09 5.54
980 1124 2.050442 GTGGGGTTTTTGCGCTCG 60.050 61.111 9.73 0.00 0.00 5.03
981 1125 2.338620 GGTGGGGTTTTTGCGCTC 59.661 61.111 9.73 0.00 0.00 5.03
984 1128 1.005156 CATGGGTGGGGTTTTTGCG 60.005 57.895 0.00 0.00 0.00 4.85
985 1129 1.374568 CCATGGGTGGGGTTTTTGC 59.625 57.895 2.85 0.00 42.11 3.68
986 1130 1.374568 GCCATGGGTGGGGTTTTTG 59.625 57.895 15.13 0.00 46.14 2.44
995 1139 1.903877 AAGGAGACTCGCCATGGGTG 61.904 60.000 15.13 7.27 42.68 4.61
996 1140 1.201429 AAAGGAGACTCGCCATGGGT 61.201 55.000 15.13 2.27 42.68 4.51
1094 1238 4.814041 AGGAGAGGAGGCCCCAGC 62.814 72.222 12.24 4.49 37.41 4.85
1410 1587 1.295746 GTTCCCTCGGGTGGTCTTC 59.704 63.158 1.18 0.00 36.47 2.87
1551 1780 9.646427 GCAAAATATAATACGGAGAGAGAGATT 57.354 33.333 0.00 0.00 0.00 2.40
1552 1781 7.971168 CGCAAAATATAATACGGAGAGAGAGAT 59.029 37.037 0.00 0.00 0.00 2.75
1553 1782 7.306213 CGCAAAATATAATACGGAGAGAGAGA 58.694 38.462 0.00 0.00 0.00 3.10
1554 1783 6.034044 GCGCAAAATATAATACGGAGAGAGAG 59.966 42.308 0.30 0.00 0.00 3.20
1598 1843 6.293900 CCGCATGATGCAGGTTAATTATTACA 60.294 38.462 18.47 0.00 45.36 2.41
1599 1844 6.086222 CCGCATGATGCAGGTTAATTATTAC 58.914 40.000 18.47 0.00 45.36 1.89
1600 1845 5.335583 GCCGCATGATGCAGGTTAATTATTA 60.336 40.000 18.47 0.00 45.36 0.98
1601 1846 4.559300 GCCGCATGATGCAGGTTAATTATT 60.559 41.667 18.47 0.00 45.36 1.40
1602 1847 3.057315 GCCGCATGATGCAGGTTAATTAT 60.057 43.478 18.47 0.00 45.36 1.28
1606 1851 1.383456 GGCCGCATGATGCAGGTTAA 61.383 55.000 18.47 0.00 45.36 2.01
1614 1861 0.942962 GAGAAGAAGGCCGCATGATG 59.057 55.000 0.00 0.00 0.00 3.07
1638 1885 2.352651 ACACGATTGATGAAATCCTGCG 59.647 45.455 0.00 0.00 44.73 5.18
1757 2004 2.146342 CAGCACTGGTTGAAGTAGGTG 58.854 52.381 0.00 0.00 0.00 4.00
1807 2054 1.004918 GACCCCGACCACAGTCTTG 60.005 63.158 0.00 0.00 41.16 3.02
1808 2055 1.458777 TGACCCCGACCACAGTCTT 60.459 57.895 0.00 0.00 41.16 3.01
1809 2056 2.200370 TGACCCCGACCACAGTCT 59.800 61.111 0.00 0.00 41.16 3.24
1811 2058 3.239253 GGTGACCCCGACCACAGT 61.239 66.667 0.00 0.00 35.13 3.55
1812 2059 3.238497 TGGTGACCCCGACCACAG 61.238 66.667 0.00 0.00 38.63 3.66
1815 2062 2.768769 TTGTGGTGACCCCGACCA 60.769 61.111 0.00 0.00 41.37 4.02
1816 2063 2.281276 GTTGTGGTGACCCCGACC 60.281 66.667 0.00 0.00 35.15 4.79
1817 2064 2.281276 GGTTGTGGTGACCCCGAC 60.281 66.667 0.00 0.00 35.15 4.79
1844 2091 2.480555 GCAATGTTCGACCAGGCG 59.519 61.111 0.00 0.00 0.00 5.52
1870 2117 1.001406 CCCTCCTCACACTCAGACAAC 59.999 57.143 0.00 0.00 0.00 3.32
1999 3651 1.271379 TGCTTGAAGTAGGCCACCTTC 60.271 52.381 21.44 21.44 34.61 3.46
2071 3723 1.444553 GCCAGAGTCGTTCCACTCG 60.445 63.158 0.00 0.00 46.52 4.18
2099 3757 2.124695 GGGCTGATCGAACCACCC 60.125 66.667 4.64 4.64 0.00 4.61
2151 3809 4.767255 CAGAGGCGGCCACAGACC 62.767 72.222 23.09 2.77 0.00 3.85
2152 3810 3.941657 GACAGAGGCGGCCACAGAC 62.942 68.421 23.09 8.69 0.00 3.51
2153 3811 3.695606 GACAGAGGCGGCCACAGA 61.696 66.667 23.09 0.00 0.00 3.41
2154 3812 3.699894 AGACAGAGGCGGCCACAG 61.700 66.667 23.09 14.70 0.00 3.66
2155 3813 4.007644 CAGACAGAGGCGGCCACA 62.008 66.667 23.09 0.00 0.00 4.17
2158 3816 4.479993 ATGCAGACAGAGGCGGCC 62.480 66.667 12.11 12.11 0.00 6.13
2159 3817 3.200593 CATGCAGACAGAGGCGGC 61.201 66.667 0.00 0.00 0.00 6.53
2160 3818 3.200593 GCATGCAGACAGAGGCGG 61.201 66.667 14.21 0.00 0.00 6.13
2161 3819 3.200593 GGCATGCAGACAGAGGCG 61.201 66.667 21.36 0.00 0.00 5.52
2162 3820 2.827642 GGGCATGCAGACAGAGGC 60.828 66.667 21.36 0.00 0.00 4.70
2163 3821 2.124403 GGGGCATGCAGACAGAGG 60.124 66.667 21.36 0.00 0.00 3.69
2164 3822 2.513204 CGGGGCATGCAGACAGAG 60.513 66.667 21.36 0.00 0.00 3.35
2165 3823 4.783621 GCGGGGCATGCAGACAGA 62.784 66.667 21.36 0.00 0.00 3.41
2301 3963 8.184192 AGTACATGATCGGATTCAAAATGAAAC 58.816 33.333 0.00 0.00 40.12 2.78
2335 3997 1.067776 CAAAAGGACGGACGAGTAGCT 60.068 52.381 0.00 0.00 0.00 3.32
2669 4331 3.134623 ACCTGTTGGATCATAGATCGCAA 59.865 43.478 0.00 4.49 37.04 4.85
2670 4332 2.700371 ACCTGTTGGATCATAGATCGCA 59.300 45.455 0.00 0.00 37.04 5.10
2671 4333 3.393089 ACCTGTTGGATCATAGATCGC 57.607 47.619 0.00 0.00 37.04 4.58
2895 4572 0.171903 AACATAACGTCGACCGAGGG 59.828 55.000 10.58 0.00 40.70 4.30
2925 4602 4.083110 CCTGCAAACTCAACCTCTTACATG 60.083 45.833 0.00 0.00 0.00 3.21
3029 4706 9.212641 TGCAGAGCTTATAAATGAGATATGTTC 57.787 33.333 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.