Multiple sequence alignment - TraesCS2B01G555500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G555500 chr2B 100.000 2222 0 0 1 2222 750115602 750113381 0.000000e+00 4104
1 TraesCS2B01G555500 chr2B 81.494 308 50 7 1671 1976 314764559 314764257 1.700000e-61 246
2 TraesCS2B01G555500 chr1D 84.435 1362 180 17 880 2222 9255901 9254553 0.000000e+00 1312
3 TraesCS2B01G555500 chr7B 82.300 1322 179 30 928 2219 265362341 265363637 0.000000e+00 1094
4 TraesCS2B01G555500 chr2A 82.135 1321 183 29 928 2219 126652842 126654138 0.000000e+00 1083
5 TraesCS2B01G555500 chr6A 81.929 1317 194 26 928 2222 615377640 615376346 0.000000e+00 1074
6 TraesCS2B01G555500 chr6A 84.528 614 71 12 1 606 587737296 587737893 8.840000e-164 586
7 TraesCS2B01G555500 chr4B 81.790 1285 187 27 952 2211 1795924 1797186 0.000000e+00 1033
8 TraesCS2B01G555500 chr4B 83.315 893 136 7 1340 2222 63806657 63805768 0.000000e+00 811
9 TraesCS2B01G555500 chr5D 83.106 1172 143 33 835 1985 38276536 38277673 0.000000e+00 1016
10 TraesCS2B01G555500 chr6B 82.164 1211 161 30 835 2026 711365259 711366433 0.000000e+00 989
11 TraesCS2B01G555500 chr6B 83.271 1064 144 19 1178 2222 709010039 709008991 0.000000e+00 948
12 TraesCS2B01G555500 chr6B 84.398 532 68 8 1690 2219 658559389 658559907 1.970000e-140 508
13 TraesCS2B01G555500 chr1A 81.788 1219 166 33 835 2035 551192848 551191668 0.000000e+00 970
14 TraesCS2B01G555500 chr3B 83.915 945 127 16 1297 2222 750878414 750877476 0.000000e+00 880
15 TraesCS2B01G555500 chr3B 91.156 147 13 0 1839 1985 9360353 9360207 1.350000e-47 200
16 TraesCS2B01G555500 chr2D 82.949 651 90 14 835 1480 595527750 595527116 3.200000e-158 568
17 TraesCS2B01G555500 chr7A 81.278 673 115 5 1296 1958 76928908 76929579 3.250000e-148 534
18 TraesCS2B01G555500 chr7A 84.118 170 17 3 1520 1681 321659041 321658874 2.950000e-34 156
19 TraesCS2B01G555500 chr6D 82.028 651 93 16 835 1480 455456881 455456250 1.170000e-147 532
20 TraesCS2B01G555500 chr5B 85.282 496 57 14 126 606 596488002 596488496 4.260000e-137 497
21 TraesCS2B01G555500 chr5B 82.988 241 39 2 916 1155 338952559 338952798 1.340000e-52 217
22 TraesCS2B01G555500 chr7D 83.729 295 31 6 317 606 528025277 528025559 1.690000e-66 263
23 TraesCS2B01G555500 chr3A 82.353 306 46 5 1752 2053 721262297 721261996 2.190000e-65 259
24 TraesCS2B01G555500 chr3A 86.387 191 16 3 1493 1675 732086317 732086505 1.350000e-47 200
25 TraesCS2B01G555500 chr5A 84.896 192 18 5 1493 1675 396475713 396475902 1.360000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G555500 chr2B 750113381 750115602 2221 True 4104 4104 100.000 1 2222 1 chr2B.!!$R2 2221
1 TraesCS2B01G555500 chr1D 9254553 9255901 1348 True 1312 1312 84.435 880 2222 1 chr1D.!!$R1 1342
2 TraesCS2B01G555500 chr7B 265362341 265363637 1296 False 1094 1094 82.300 928 2219 1 chr7B.!!$F1 1291
3 TraesCS2B01G555500 chr2A 126652842 126654138 1296 False 1083 1083 82.135 928 2219 1 chr2A.!!$F1 1291
4 TraesCS2B01G555500 chr6A 615376346 615377640 1294 True 1074 1074 81.929 928 2222 1 chr6A.!!$R1 1294
5 TraesCS2B01G555500 chr6A 587737296 587737893 597 False 586 586 84.528 1 606 1 chr6A.!!$F1 605
6 TraesCS2B01G555500 chr4B 1795924 1797186 1262 False 1033 1033 81.790 952 2211 1 chr4B.!!$F1 1259
7 TraesCS2B01G555500 chr4B 63805768 63806657 889 True 811 811 83.315 1340 2222 1 chr4B.!!$R1 882
8 TraesCS2B01G555500 chr5D 38276536 38277673 1137 False 1016 1016 83.106 835 1985 1 chr5D.!!$F1 1150
9 TraesCS2B01G555500 chr6B 711365259 711366433 1174 False 989 989 82.164 835 2026 1 chr6B.!!$F2 1191
10 TraesCS2B01G555500 chr6B 709008991 709010039 1048 True 948 948 83.271 1178 2222 1 chr6B.!!$R1 1044
11 TraesCS2B01G555500 chr6B 658559389 658559907 518 False 508 508 84.398 1690 2219 1 chr6B.!!$F1 529
12 TraesCS2B01G555500 chr1A 551191668 551192848 1180 True 970 970 81.788 835 2035 1 chr1A.!!$R1 1200
13 TraesCS2B01G555500 chr3B 750877476 750878414 938 True 880 880 83.915 1297 2222 1 chr3B.!!$R2 925
14 TraesCS2B01G555500 chr2D 595527116 595527750 634 True 568 568 82.949 835 1480 1 chr2D.!!$R1 645
15 TraesCS2B01G555500 chr7A 76928908 76929579 671 False 534 534 81.278 1296 1958 1 chr7A.!!$F1 662
16 TraesCS2B01G555500 chr6D 455456250 455456881 631 True 532 532 82.028 835 1480 1 chr6D.!!$R1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
632 641 0.033503 TCCTGCTGGACTCGATGGTA 60.034 55.0 8.48 0.0 37.46 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1525 1555 0.163788 CACGCTGTAAACCTTGCTCG 59.836 55.0 0.0 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.649171 CTCGTGTGCTAGCTTTGTACG 59.351 52.381 17.23 17.26 0.00 3.67
69 70 2.667199 GGGGTACGCAAGCACGTT 60.667 61.111 12.45 0.00 45.75 3.99
70 71 2.554272 GGGTACGCAAGCACGTTG 59.446 61.111 4.83 0.00 45.75 4.10
76 77 2.715005 GCAAGCACGTTGTGAGCA 59.285 55.556 0.24 0.00 38.55 4.26
95 96 5.163488 TGAGCATGATGGGCTGATTTAAAAG 60.163 40.000 0.00 0.00 42.78 2.27
101 102 5.125417 TGATGGGCTGATTTAAAAGTAGCAC 59.875 40.000 17.75 15.85 38.25 4.40
102 103 4.402829 TGGGCTGATTTAAAAGTAGCACA 58.597 39.130 17.46 17.46 44.72 4.57
103 104 4.217550 TGGGCTGATTTAAAAGTAGCACAC 59.782 41.667 17.46 10.55 42.33 3.82
104 105 4.380550 GGGCTGATTTAAAAGTAGCACACC 60.381 45.833 17.75 9.94 37.71 4.16
105 106 4.217550 GGCTGATTTAAAAGTAGCACACCA 59.782 41.667 17.75 0.00 36.15 4.17
106 107 5.105756 GGCTGATTTAAAAGTAGCACACCAT 60.106 40.000 17.75 0.00 36.15 3.55
107 108 5.801947 GCTGATTTAAAAGTAGCACACCATG 59.198 40.000 13.55 0.00 34.64 3.66
170 171 0.464554 CTGCAGGCTAGCTTAACCCC 60.465 60.000 15.72 0.00 34.99 4.95
178 179 3.188011 GCTTAACCCCAGAAGCGC 58.812 61.111 0.00 0.00 38.79 5.92
193 194 0.538287 AGCGCTGCTTTTTCTTCCCT 60.538 50.000 10.39 0.00 33.89 4.20
194 195 1.165270 GCGCTGCTTTTTCTTCCCTA 58.835 50.000 0.00 0.00 0.00 3.53
218 221 0.108774 GACGATTCATCCCCTTCCCC 59.891 60.000 0.00 0.00 0.00 4.81
300 303 2.627699 GCAAAATCAGGGTGAGAACCAA 59.372 45.455 0.00 0.00 0.00 3.67
308 311 1.026718 GGTGAGAACCAATCTGCCCG 61.027 60.000 0.00 0.00 38.96 6.13
309 312 0.321653 GTGAGAACCAATCTGCCCGT 60.322 55.000 0.00 0.00 38.96 5.28
314 318 1.737793 GAACCAATCTGCCCGTGTAAG 59.262 52.381 0.00 0.00 0.00 2.34
332 336 6.421202 CGTGTAAGTTCTCTTGCTCTTACTTT 59.579 38.462 12.75 0.00 41.25 2.66
336 340 9.047371 GTAAGTTCTCTTGCTCTTACTTTTTCT 57.953 33.333 0.00 0.00 39.10 2.52
367 372 7.232330 TGAGATCTATCTTGACCTGGTATTCTG 59.768 40.741 0.00 0.00 37.25 3.02
380 385 4.191544 TGGTATTCTGCTCCTTGATTTCG 58.808 43.478 0.00 0.00 0.00 3.46
392 397 3.980775 CCTTGATTTCGCAACGATTTGTT 59.019 39.130 0.00 0.00 43.09 2.83
393 398 4.444056 CCTTGATTTCGCAACGATTTGTTT 59.556 37.500 0.00 0.00 39.29 2.83
417 422 8.746052 TTTTTAGTTCTTCTCTCATTGTTGGA 57.254 30.769 0.00 0.00 0.00 3.53
429 438 3.459227 TCATTGTTGGATGGATCTGGCTA 59.541 43.478 0.00 0.00 0.00 3.93
431 440 3.565764 TGTTGGATGGATCTGGCTAAG 57.434 47.619 0.00 0.00 0.00 2.18
435 444 3.321039 TGGATGGATCTGGCTAAGTGAT 58.679 45.455 0.00 0.00 0.00 3.06
467 476 0.984995 GCTCCAGGTTGGTTCCTAGT 59.015 55.000 0.00 0.00 39.03 2.57
491 500 1.000274 GATGCGGGTGATATTTTGGGC 60.000 52.381 0.00 0.00 0.00 5.36
493 502 2.029743 CGGGTGATATTTTGGGCGG 58.970 57.895 0.00 0.00 0.00 6.13
523 532 1.223187 GTTGTCGAATCCGTGGTTGT 58.777 50.000 0.00 0.00 37.05 3.32
531 540 2.879103 ATCCGTGGTTGTTTCCATCT 57.121 45.000 0.00 0.00 39.81 2.90
547 556 1.748329 ATCTATGAAGCTCGCGGGCA 61.748 55.000 35.41 13.95 34.17 5.36
548 557 2.202878 TATGAAGCTCGCGGGCAC 60.203 61.111 35.41 25.95 34.17 5.01
550 559 2.238847 TATGAAGCTCGCGGGCACTT 62.239 55.000 35.41 20.61 34.17 3.16
551 560 3.491652 GAAGCTCGCGGGCACTTC 61.492 66.667 35.41 24.80 34.17 3.01
557 566 3.342627 CGCGGGCACTTCGTTGAA 61.343 61.111 0.00 0.00 0.00 2.69
589 598 1.303888 AACCCATGGACAGCAGCAG 60.304 57.895 15.22 0.00 0.00 4.24
606 615 1.581934 CAGCGTCAAAGACCAGTTCA 58.418 50.000 0.00 0.00 0.00 3.18
607 616 1.939934 CAGCGTCAAAGACCAGTTCAA 59.060 47.619 0.00 0.00 0.00 2.69
608 617 2.354510 CAGCGTCAAAGACCAGTTCAAA 59.645 45.455 0.00 0.00 0.00 2.69
609 618 3.013921 AGCGTCAAAGACCAGTTCAAAA 58.986 40.909 0.00 0.00 0.00 2.44
610 619 3.065371 AGCGTCAAAGACCAGTTCAAAAG 59.935 43.478 0.00 0.00 0.00 2.27
611 620 3.792124 GCGTCAAAGACCAGTTCAAAAGG 60.792 47.826 0.00 0.00 0.00 3.11
612 621 3.706698 GTCAAAGACCAGTTCAAAAGGC 58.293 45.455 0.00 0.00 0.00 4.35
613 622 3.381590 GTCAAAGACCAGTTCAAAAGGCT 59.618 43.478 0.00 0.00 0.00 4.58
614 623 3.632145 TCAAAGACCAGTTCAAAAGGCTC 59.368 43.478 0.00 0.00 0.00 4.70
615 624 2.278332 AGACCAGTTCAAAAGGCTCC 57.722 50.000 0.00 0.00 0.00 4.70
616 625 1.777272 AGACCAGTTCAAAAGGCTCCT 59.223 47.619 0.00 0.00 0.00 3.69
617 626 1.882623 GACCAGTTCAAAAGGCTCCTG 59.117 52.381 0.00 0.00 0.00 3.86
618 627 0.600057 CCAGTTCAAAAGGCTCCTGC 59.400 55.000 0.00 0.00 38.76 4.85
619 628 1.613836 CAGTTCAAAAGGCTCCTGCT 58.386 50.000 0.00 0.00 39.59 4.24
620 629 1.268899 CAGTTCAAAAGGCTCCTGCTG 59.731 52.381 0.00 0.00 39.59 4.41
621 630 0.600057 GTTCAAAAGGCTCCTGCTGG 59.400 55.000 2.58 2.58 39.59 4.85
622 631 0.478072 TTCAAAAGGCTCCTGCTGGA 59.522 50.000 12.29 12.29 40.69 3.86
623 632 0.250901 TCAAAAGGCTCCTGCTGGAC 60.251 55.000 8.48 6.01 37.46 4.02
624 633 0.251077 CAAAAGGCTCCTGCTGGACT 60.251 55.000 8.48 2.47 37.46 3.85
625 634 0.037447 AAAAGGCTCCTGCTGGACTC 59.963 55.000 8.48 3.95 37.46 3.36
626 635 2.177594 AAAGGCTCCTGCTGGACTCG 62.178 60.000 8.48 0.44 37.46 4.18
627 636 3.071206 GGCTCCTGCTGGACTCGA 61.071 66.667 8.48 0.00 37.46 4.04
628 637 2.430610 GGCTCCTGCTGGACTCGAT 61.431 63.158 8.48 0.00 37.46 3.59
629 638 1.227205 GCTCCTGCTGGACTCGATG 60.227 63.158 8.48 0.00 37.46 3.84
630 639 1.440893 CTCCTGCTGGACTCGATGG 59.559 63.158 8.48 0.00 37.46 3.51
631 640 1.305297 TCCTGCTGGACTCGATGGT 60.305 57.895 8.48 0.00 37.46 3.55
632 641 0.033503 TCCTGCTGGACTCGATGGTA 60.034 55.000 8.48 0.00 37.46 3.25
633 642 0.824109 CCTGCTGGACTCGATGGTAA 59.176 55.000 2.92 0.00 34.57 2.85
634 643 1.471676 CCTGCTGGACTCGATGGTAAC 60.472 57.143 2.92 0.00 34.57 2.50
635 644 0.172578 TGCTGGACTCGATGGTAACG 59.827 55.000 0.00 0.00 42.51 3.18
636 645 0.454600 GCTGGACTCGATGGTAACGA 59.545 55.000 0.00 0.00 42.51 3.85
637 646 1.135199 GCTGGACTCGATGGTAACGAA 60.135 52.381 0.00 0.00 39.23 3.85
638 647 2.527100 CTGGACTCGATGGTAACGAAC 58.473 52.381 0.00 0.00 39.23 3.95
639 648 1.135603 TGGACTCGATGGTAACGAACG 60.136 52.381 0.00 0.00 39.23 3.95
640 649 1.542544 GACTCGATGGTAACGAACGG 58.457 55.000 0.00 0.00 39.23 4.44
641 650 1.131126 GACTCGATGGTAACGAACGGA 59.869 52.381 0.00 0.00 39.23 4.69
642 651 1.135575 ACTCGATGGTAACGAACGGAC 60.136 52.381 0.00 0.00 39.23 4.79
643 652 0.880441 TCGATGGTAACGAACGGACA 59.120 50.000 0.00 0.00 42.51 4.02
644 653 0.986992 CGATGGTAACGAACGGACAC 59.013 55.000 0.00 0.00 42.51 3.67
645 654 1.353076 GATGGTAACGAACGGACACC 58.647 55.000 0.00 3.64 42.51 4.16
646 655 0.037046 ATGGTAACGAACGGACACCC 60.037 55.000 0.00 0.00 42.51 4.61
647 656 1.367102 GGTAACGAACGGACACCCA 59.633 57.895 0.00 0.00 0.00 4.51
648 657 0.037046 GGTAACGAACGGACACCCAT 60.037 55.000 0.00 0.00 0.00 4.00
649 658 1.608801 GGTAACGAACGGACACCCATT 60.609 52.381 0.00 0.00 0.00 3.16
650 659 1.461897 GTAACGAACGGACACCCATTG 59.538 52.381 0.00 0.00 0.00 2.82
651 660 0.887387 AACGAACGGACACCCATTGG 60.887 55.000 0.00 0.00 37.80 3.16
653 662 1.296056 CGAACGGACACCCATTGGTC 61.296 60.000 1.20 0.00 45.57 4.02
654 663 0.250553 GAACGGACACCCATTGGTCA 60.251 55.000 1.20 0.00 45.57 4.02
655 664 0.404040 AACGGACACCCATTGGTCAT 59.596 50.000 1.20 0.00 45.57 3.06
656 665 0.404040 ACGGACACCCATTGGTCATT 59.596 50.000 1.20 0.00 45.57 2.57
657 666 1.203001 ACGGACACCCATTGGTCATTT 60.203 47.619 1.20 0.00 45.57 2.32
658 667 1.472480 CGGACACCCATTGGTCATTTC 59.528 52.381 1.20 0.00 45.57 2.17
659 668 2.807676 GGACACCCATTGGTCATTTCT 58.192 47.619 1.20 0.00 45.57 2.52
660 669 3.165071 GGACACCCATTGGTCATTTCTT 58.835 45.455 1.20 0.00 45.57 2.52
661 670 3.578282 GGACACCCATTGGTCATTTCTTT 59.422 43.478 1.20 0.00 45.57 2.52
662 671 4.040339 GGACACCCATTGGTCATTTCTTTT 59.960 41.667 1.20 0.00 45.57 2.27
663 672 5.213891 ACACCCATTGGTCATTTCTTTTC 57.786 39.130 1.20 0.00 45.57 2.29
664 673 4.901250 ACACCCATTGGTCATTTCTTTTCT 59.099 37.500 1.20 0.00 45.57 2.52
665 674 5.221501 ACACCCATTGGTCATTTCTTTTCTG 60.222 40.000 1.20 0.00 45.57 3.02
666 675 4.901250 ACCCATTGGTCATTTCTTTTCTGT 59.099 37.500 1.20 0.00 43.06 3.41
667 676 5.366477 ACCCATTGGTCATTTCTTTTCTGTT 59.634 36.000 1.20 0.00 43.06 3.16
668 677 6.553100 ACCCATTGGTCATTTCTTTTCTGTTA 59.447 34.615 1.20 0.00 43.06 2.41
669 678 7.092716 CCCATTGGTCATTTCTTTTCTGTTAG 58.907 38.462 1.20 0.00 0.00 2.34
670 679 6.587608 CCATTGGTCATTTCTTTTCTGTTAGC 59.412 38.462 0.00 0.00 0.00 3.09
671 680 5.705609 TGGTCATTTCTTTTCTGTTAGCC 57.294 39.130 0.00 0.00 0.00 3.93
672 681 4.215399 TGGTCATTTCTTTTCTGTTAGCCG 59.785 41.667 0.00 0.00 0.00 5.52
673 682 4.454504 GGTCATTTCTTTTCTGTTAGCCGA 59.545 41.667 0.00 0.00 0.00 5.54
674 683 5.048991 GGTCATTTCTTTTCTGTTAGCCGAA 60.049 40.000 0.00 0.00 0.00 4.30
675 684 6.349363 GGTCATTTCTTTTCTGTTAGCCGAAT 60.349 38.462 0.00 0.00 0.00 3.34
676 685 6.524586 GTCATTTCTTTTCTGTTAGCCGAATG 59.475 38.462 0.00 0.00 0.00 2.67
677 686 6.429692 TCATTTCTTTTCTGTTAGCCGAATGA 59.570 34.615 0.00 0.00 0.00 2.57
678 687 6.817765 TTTCTTTTCTGTTAGCCGAATGAT 57.182 33.333 0.00 0.00 0.00 2.45
679 688 6.817765 TTCTTTTCTGTTAGCCGAATGATT 57.182 33.333 0.00 0.00 0.00 2.57
680 689 6.422776 TCTTTTCTGTTAGCCGAATGATTC 57.577 37.500 0.00 0.00 0.00 2.52
681 690 6.173339 TCTTTTCTGTTAGCCGAATGATTCT 58.827 36.000 3.43 0.00 0.00 2.40
682 691 7.327975 TCTTTTCTGTTAGCCGAATGATTCTA 58.672 34.615 3.43 0.00 0.00 2.10
683 692 7.492669 TCTTTTCTGTTAGCCGAATGATTCTAG 59.507 37.037 3.43 0.00 0.00 2.43
684 693 4.621991 TCTGTTAGCCGAATGATTCTAGC 58.378 43.478 3.43 6.31 0.00 3.42
685 694 4.342378 TCTGTTAGCCGAATGATTCTAGCT 59.658 41.667 19.04 19.04 39.36 3.32
686 695 5.023533 TGTTAGCCGAATGATTCTAGCTT 57.976 39.130 19.89 8.62 37.83 3.74
687 696 6.040504 TCTGTTAGCCGAATGATTCTAGCTTA 59.959 38.462 19.89 11.55 37.83 3.09
688 697 6.759272 TGTTAGCCGAATGATTCTAGCTTAT 58.241 36.000 19.89 4.45 37.83 1.73
689 698 7.217200 TGTTAGCCGAATGATTCTAGCTTATT 58.783 34.615 19.89 4.17 37.83 1.40
690 699 7.171508 TGTTAGCCGAATGATTCTAGCTTATTG 59.828 37.037 19.89 0.00 37.83 1.90
691 700 5.615289 AGCCGAATGATTCTAGCTTATTGT 58.385 37.500 12.12 0.00 34.53 2.71
692 701 6.759272 AGCCGAATGATTCTAGCTTATTGTA 58.241 36.000 12.12 0.00 34.53 2.41
693 702 7.217200 AGCCGAATGATTCTAGCTTATTGTAA 58.783 34.615 12.12 0.00 34.53 2.41
694 703 7.880195 AGCCGAATGATTCTAGCTTATTGTAAT 59.120 33.333 12.12 0.00 34.53 1.89
695 704 8.507249 GCCGAATGATTCTAGCTTATTGTAATT 58.493 33.333 3.43 0.00 0.00 1.40
696 705 9.817365 CCGAATGATTCTAGCTTATTGTAATTG 57.183 33.333 3.43 0.00 0.00 2.32
697 706 9.322776 CGAATGATTCTAGCTTATTGTAATTGC 57.677 33.333 3.43 0.00 0.00 3.56
698 707 9.617975 GAATGATTCTAGCTTATTGTAATTGCC 57.382 33.333 0.00 0.00 0.00 4.52
699 708 8.930846 ATGATTCTAGCTTATTGTAATTGCCT 57.069 30.769 0.00 0.00 0.00 4.75
700 709 8.158169 TGATTCTAGCTTATTGTAATTGCCTG 57.842 34.615 0.00 0.00 0.00 4.85
701 710 7.775093 TGATTCTAGCTTATTGTAATTGCCTGT 59.225 33.333 0.00 0.00 0.00 4.00
702 711 9.273016 GATTCTAGCTTATTGTAATTGCCTGTA 57.727 33.333 0.00 0.00 0.00 2.74
703 712 9.627123 ATTCTAGCTTATTGTAATTGCCTGTAA 57.373 29.630 0.00 0.00 0.00 2.41
704 713 9.456147 TTCTAGCTTATTGTAATTGCCTGTAAA 57.544 29.630 0.00 0.00 0.00 2.01
705 714 9.456147 TCTAGCTTATTGTAATTGCCTGTAAAA 57.544 29.630 0.00 0.00 0.00 1.52
706 715 9.503427 CTAGCTTATTGTAATTGCCTGTAAAAC 57.497 33.333 0.00 0.00 0.00 2.43
707 716 7.027161 AGCTTATTGTAATTGCCTGTAAAACG 58.973 34.615 0.00 0.00 0.00 3.60
708 717 7.024768 GCTTATTGTAATTGCCTGTAAAACGA 58.975 34.615 0.00 0.00 0.00 3.85
709 718 7.539366 GCTTATTGTAATTGCCTGTAAAACGAA 59.461 33.333 0.00 0.00 0.00 3.85
710 719 9.400638 CTTATTGTAATTGCCTGTAAAACGAAA 57.599 29.630 0.00 0.00 0.00 3.46
711 720 9.745880 TTATTGTAATTGCCTGTAAAACGAAAA 57.254 25.926 0.00 0.00 0.00 2.29
712 721 7.452630 TTGTAATTGCCTGTAAAACGAAAAC 57.547 32.000 0.00 0.00 0.00 2.43
713 722 6.561614 TGTAATTGCCTGTAAAACGAAAACA 58.438 32.000 0.00 0.00 0.00 2.83
714 723 7.033791 TGTAATTGCCTGTAAAACGAAAACAA 58.966 30.769 0.00 0.00 0.00 2.83
715 724 6.582437 AATTGCCTGTAAAACGAAAACAAG 57.418 33.333 0.00 0.00 0.00 3.16
716 725 3.440228 TGCCTGTAAAACGAAAACAAGC 58.560 40.909 0.00 0.00 32.44 4.01
717 726 2.466205 GCCTGTAAAACGAAAACAAGCG 59.534 45.455 0.00 0.00 0.00 4.68
718 727 2.466205 CCTGTAAAACGAAAACAAGCGC 59.534 45.455 0.00 0.00 0.00 5.92
719 728 3.102276 CTGTAAAACGAAAACAAGCGCA 58.898 40.909 11.47 0.00 0.00 6.09
720 729 3.696898 TGTAAAACGAAAACAAGCGCAT 58.303 36.364 11.47 0.00 0.00 4.73
721 730 3.483922 TGTAAAACGAAAACAAGCGCATG 59.516 39.130 11.47 11.60 0.00 4.06
722 731 1.486439 AAACGAAAACAAGCGCATGG 58.514 45.000 17.89 4.42 0.00 3.66
723 732 0.665835 AACGAAAACAAGCGCATGGA 59.334 45.000 17.89 0.00 0.00 3.41
724 733 0.665835 ACGAAAACAAGCGCATGGAA 59.334 45.000 17.89 0.00 0.00 3.53
725 734 1.330306 CGAAAACAAGCGCATGGAAG 58.670 50.000 17.89 0.00 0.00 3.46
726 735 1.069296 CGAAAACAAGCGCATGGAAGA 60.069 47.619 17.89 0.00 0.00 2.87
727 736 2.589014 GAAAACAAGCGCATGGAAGAG 58.411 47.619 17.89 0.00 0.00 2.85
728 737 1.609208 AAACAAGCGCATGGAAGAGT 58.391 45.000 17.89 0.00 0.00 3.24
729 738 1.609208 AACAAGCGCATGGAAGAGTT 58.391 45.000 17.89 0.00 0.00 3.01
730 739 1.160137 ACAAGCGCATGGAAGAGTTC 58.840 50.000 17.89 0.00 0.00 3.01
731 740 0.095935 CAAGCGCATGGAAGAGTTCG 59.904 55.000 11.47 0.00 0.00 3.95
732 741 1.639298 AAGCGCATGGAAGAGTTCGC 61.639 55.000 11.47 0.00 42.46 4.70
733 742 3.093278 CGCATGGAAGAGTTCGCC 58.907 61.111 0.00 0.00 0.00 5.54
734 743 2.464459 CGCATGGAAGAGTTCGCCC 61.464 63.158 0.00 0.00 0.00 6.13
735 744 2.464459 GCATGGAAGAGTTCGCCCG 61.464 63.158 0.00 0.00 0.00 6.13
736 745 1.815421 CATGGAAGAGTTCGCCCGG 60.815 63.158 0.00 0.00 0.00 5.73
737 746 3.031417 ATGGAAGAGTTCGCCCGGG 62.031 63.158 19.09 19.09 0.00 5.73
738 747 4.468689 GGAAGAGTTCGCCCGGGG 62.469 72.222 25.28 9.31 0.00 5.73
739 748 4.468689 GAAGAGTTCGCCCGGGGG 62.469 72.222 31.08 31.08 38.57 5.40
774 783 7.497925 TTTTTGCCGTTTTATAGCCAATTTT 57.502 28.000 0.00 0.00 0.00 1.82
775 784 7.497925 TTTTGCCGTTTTATAGCCAATTTTT 57.502 28.000 0.00 0.00 0.00 1.94
776 785 8.603242 TTTTGCCGTTTTATAGCCAATTTTTA 57.397 26.923 0.00 0.00 0.00 1.52
777 786 7.820044 TTGCCGTTTTATAGCCAATTTTTAG 57.180 32.000 0.00 0.00 0.00 1.85
778 787 5.808030 TGCCGTTTTATAGCCAATTTTTAGC 59.192 36.000 0.00 0.00 0.00 3.09
779 788 6.040247 GCCGTTTTATAGCCAATTTTTAGCT 58.960 36.000 0.00 0.00 40.66 3.32
780 789 7.148052 TGCCGTTTTATAGCCAATTTTTAGCTA 60.148 33.333 0.00 0.00 42.88 3.32
781 790 7.378728 GCCGTTTTATAGCCAATTTTTAGCTAG 59.621 37.037 0.00 0.00 42.05 3.42
782 791 7.378728 CCGTTTTATAGCCAATTTTTAGCTAGC 59.621 37.037 6.62 6.62 42.05 3.42
783 792 8.129211 CGTTTTATAGCCAATTTTTAGCTAGCT 58.871 33.333 23.12 23.12 42.05 3.32
784 793 9.803315 GTTTTATAGCCAATTTTTAGCTAGCTT 57.197 29.630 24.88 7.25 42.05 3.74
785 794 9.801873 TTTTATAGCCAATTTTTAGCTAGCTTG 57.198 29.630 24.88 13.67 42.05 4.01
786 795 8.746052 TTATAGCCAATTTTTAGCTAGCTTGA 57.254 30.769 24.88 9.59 42.05 3.02
787 796 5.982890 AGCCAATTTTTAGCTAGCTTGAA 57.017 34.783 24.88 15.33 34.38 2.69
788 797 6.345096 AGCCAATTTTTAGCTAGCTTGAAA 57.655 33.333 24.88 22.16 34.38 2.69
789 798 6.159293 AGCCAATTTTTAGCTAGCTTGAAAC 58.841 36.000 24.88 11.45 34.38 2.78
790 799 5.925969 GCCAATTTTTAGCTAGCTTGAAACA 59.074 36.000 24.88 11.71 0.00 2.83
791 800 6.128822 GCCAATTTTTAGCTAGCTTGAAACAC 60.129 38.462 24.88 10.24 0.00 3.32
792 801 6.922957 CCAATTTTTAGCTAGCTTGAAACACA 59.077 34.615 24.88 9.99 0.00 3.72
793 802 7.115378 CCAATTTTTAGCTAGCTTGAAACACAG 59.885 37.037 24.88 13.05 0.00 3.66
794 803 6.935741 TTTTTAGCTAGCTTGAAACACAGA 57.064 33.333 24.88 6.54 0.00 3.41
795 804 7.510549 TTTTTAGCTAGCTTGAAACACAGAT 57.489 32.000 24.88 0.00 0.00 2.90
796 805 7.510549 TTTTAGCTAGCTTGAAACACAGATT 57.489 32.000 24.88 0.00 0.00 2.40
797 806 7.510549 TTTAGCTAGCTTGAAACACAGATTT 57.489 32.000 24.88 0.00 0.00 2.17
798 807 7.510549 TTAGCTAGCTTGAAACACAGATTTT 57.489 32.000 24.88 0.00 0.00 1.82
799 808 6.396829 AGCTAGCTTGAAACACAGATTTTT 57.603 33.333 12.68 0.00 0.00 1.94
800 809 6.442112 AGCTAGCTTGAAACACAGATTTTTC 58.558 36.000 12.68 0.00 33.15 2.29
801 810 6.039717 AGCTAGCTTGAAACACAGATTTTTCA 59.960 34.615 12.68 0.00 39.42 2.69
802 811 6.697019 GCTAGCTTGAAACACAGATTTTTCAA 59.303 34.615 7.70 8.70 45.20 2.69
803 812 7.383300 GCTAGCTTGAAACACAGATTTTTCAAT 59.617 33.333 7.70 0.70 45.83 2.57
804 813 9.897744 CTAGCTTGAAACACAGATTTTTCAATA 57.102 29.630 9.31 1.66 45.83 1.90
805 814 8.807667 AGCTTGAAACACAGATTTTTCAATAG 57.192 30.769 9.31 1.97 45.83 1.73
806 815 7.869429 AGCTTGAAACACAGATTTTTCAATAGG 59.131 33.333 9.31 1.63 45.83 2.57
807 816 7.116805 GCTTGAAACACAGATTTTTCAATAGGG 59.883 37.037 9.31 1.35 45.83 3.53
808 817 7.595819 TGAAACACAGATTTTTCAATAGGGT 57.404 32.000 0.00 0.00 38.48 4.34
809 818 7.432869 TGAAACACAGATTTTTCAATAGGGTG 58.567 34.615 0.00 0.00 38.48 4.61
810 819 6.976934 AACACAGATTTTTCAATAGGGTGT 57.023 33.333 0.00 0.00 34.72 4.16
811 820 6.575162 ACACAGATTTTTCAATAGGGTGTC 57.425 37.500 0.00 0.00 30.77 3.67
812 821 6.068010 ACACAGATTTTTCAATAGGGTGTCA 58.932 36.000 0.00 0.00 30.77 3.58
813 822 6.721208 ACACAGATTTTTCAATAGGGTGTCAT 59.279 34.615 0.00 0.00 30.77 3.06
814 823 7.094205 ACACAGATTTTTCAATAGGGTGTCATC 60.094 37.037 0.00 0.00 30.77 2.92
815 824 6.947733 ACAGATTTTTCAATAGGGTGTCATCA 59.052 34.615 0.00 0.00 0.00 3.07
816 825 7.094205 ACAGATTTTTCAATAGGGTGTCATCAC 60.094 37.037 0.00 0.00 43.19 3.06
817 826 7.121759 CAGATTTTTCAATAGGGTGTCATCACT 59.878 37.037 0.00 0.00 43.41 3.41
818 827 6.573664 TTTTTCAATAGGGTGTCATCACTG 57.426 37.500 0.00 0.00 43.41 3.66
819 828 4.908601 TTCAATAGGGTGTCATCACTGT 57.091 40.909 0.00 0.00 43.41 3.55
820 829 6.367374 TTTCAATAGGGTGTCATCACTGTA 57.633 37.500 0.00 0.00 43.41 2.74
821 830 5.598416 TCAATAGGGTGTCATCACTGTAG 57.402 43.478 0.00 0.00 43.41 2.74
822 831 4.405680 TCAATAGGGTGTCATCACTGTAGG 59.594 45.833 0.00 0.00 43.41 3.18
823 832 0.905357 AGGGTGTCATCACTGTAGGC 59.095 55.000 0.00 0.00 43.41 3.93
824 833 0.613260 GGGTGTCATCACTGTAGGCA 59.387 55.000 0.00 0.00 43.41 4.75
825 834 1.003118 GGGTGTCATCACTGTAGGCAA 59.997 52.381 0.00 0.00 43.41 4.52
826 835 2.356125 GGGTGTCATCACTGTAGGCAAT 60.356 50.000 0.00 0.00 43.41 3.56
827 836 3.118408 GGGTGTCATCACTGTAGGCAATA 60.118 47.826 0.00 0.00 43.41 1.90
828 837 4.513442 GGTGTCATCACTGTAGGCAATAA 58.487 43.478 0.00 0.00 43.41 1.40
829 838 4.941263 GGTGTCATCACTGTAGGCAATAAA 59.059 41.667 0.00 0.00 43.41 1.40
830 839 5.414454 GGTGTCATCACTGTAGGCAATAAAA 59.586 40.000 0.00 0.00 43.41 1.52
831 840 6.072175 GGTGTCATCACTGTAGGCAATAAAAA 60.072 38.462 0.00 0.00 43.41 1.94
877 888 9.840427 ATCTTTTTCAGAATTACCATGTTTACG 57.160 29.630 0.00 0.00 34.16 3.18
880 891 6.730960 TTCAGAATTACCATGTTTACGTCC 57.269 37.500 0.00 0.00 0.00 4.79
882 893 4.033587 CAGAATTACCATGTTTACGTCCGG 59.966 45.833 0.00 0.00 0.00 5.14
886 897 0.390603 CCATGTTTACGTCCGGCTGA 60.391 55.000 0.00 0.00 0.00 4.26
912 924 6.938596 ACCAGTAGAAAATACAGTTAACACCC 59.061 38.462 8.61 0.00 0.00 4.61
913 925 7.166167 CCAGTAGAAAATACAGTTAACACCCT 58.834 38.462 8.61 0.00 0.00 4.34
914 926 7.664318 CCAGTAGAAAATACAGTTAACACCCTT 59.336 37.037 8.61 0.00 0.00 3.95
950 967 0.251608 ATTAGGGTTGGCAAGGCGTT 60.252 50.000 0.00 0.00 0.00 4.84
954 971 1.305930 GGGTTGGCAAGGCGTTAGAG 61.306 60.000 0.00 0.00 0.00 2.43
978 995 2.353610 GGATGCCAACCCAAGCAGG 61.354 63.158 0.00 0.00 43.38 4.85
1011 1028 1.328986 GAGGCTTCAATGCGAGCTTAC 59.671 52.381 8.01 0.00 0.00 2.34
1043 1060 3.434309 AGGCTGGCATTGTTGTTAATCT 58.566 40.909 3.38 0.00 0.00 2.40
1053 1070 2.224426 TGTTGTTAATCTGGCACTCGGT 60.224 45.455 0.00 0.00 0.00 4.69
1074 1091 4.686554 GGTACTAGCTTTGACACAGTTGAG 59.313 45.833 0.00 0.00 0.00 3.02
1106 1123 9.747293 GTATGAGTTTTACAACCTATACTCCTC 57.253 37.037 0.00 0.00 33.49 3.71
1107 1124 7.786046 TGAGTTTTACAACCTATACTCCTCA 57.214 36.000 0.00 0.00 32.96 3.86
1108 1125 8.197592 TGAGTTTTACAACCTATACTCCTCAA 57.802 34.615 0.00 0.00 32.96 3.02
1125 1142 1.966762 AAAGATGGGCTTTGGCGTG 59.033 52.632 0.00 0.00 44.89 5.34
1188 1205 4.458989 TGGACAAAATGTATGCAGGAGTTC 59.541 41.667 0.00 0.00 0.00 3.01
1189 1206 4.458989 GGACAAAATGTATGCAGGAGTTCA 59.541 41.667 0.00 0.00 0.00 3.18
1245 1266 7.958053 ATTCAGAAAAGAAAAATGCTTCCTG 57.042 32.000 0.00 0.00 0.00 3.86
1261 1284 0.511221 CCTGTGCACGTACCTTTTCG 59.489 55.000 13.13 0.00 0.00 3.46
1288 1314 7.864108 TTATGTTCTCATATGTTGTTCTGGG 57.136 36.000 1.90 0.00 36.57 4.45
1292 1318 6.430925 TGTTCTCATATGTTGTTCTGGGAAAG 59.569 38.462 1.90 0.00 0.00 2.62
1294 1320 6.173339 TCTCATATGTTGTTCTGGGAAAGAC 58.827 40.000 1.90 0.00 33.46 3.01
1322 1352 0.248289 AGCCATTGCAATCCAACAGC 59.752 50.000 9.53 6.02 41.13 4.40
1326 1356 1.135527 CATTGCAATCCAACAGCCGAT 59.864 47.619 9.53 0.00 35.99 4.18
1327 1357 0.810648 TTGCAATCCAACAGCCGATC 59.189 50.000 0.00 0.00 0.00 3.69
1328 1358 1.031571 TGCAATCCAACAGCCGATCC 61.032 55.000 0.00 0.00 0.00 3.36
1329 1359 1.031571 GCAATCCAACAGCCGATCCA 61.032 55.000 0.00 0.00 0.00 3.41
1373 1403 0.901827 TGCGGGTGCTTAGATCTGAA 59.098 50.000 5.18 0.00 43.34 3.02
1374 1404 1.486310 TGCGGGTGCTTAGATCTGAAT 59.514 47.619 5.18 0.00 43.34 2.57
1377 1407 3.681897 GCGGGTGCTTAGATCTGAATATG 59.318 47.826 5.18 0.00 38.39 1.78
1378 1408 3.681897 CGGGTGCTTAGATCTGAATATGC 59.318 47.826 5.18 0.00 0.00 3.14
1448 1478 8.818622 TCTTAGTTAACTGTATGGAGAAGCTA 57.181 34.615 18.56 0.00 0.00 3.32
1483 1513 8.650143 TCACACTGGCACATAGATAGATATAA 57.350 34.615 0.00 0.00 38.20 0.98
1525 1555 7.283354 ACAGCTAAGAGAAAACAATATAAGCCC 59.717 37.037 0.00 0.00 0.00 5.19
1547 1577 1.071071 AGCAAGGTTTACAGCGTGGTA 59.929 47.619 0.00 0.00 38.58 3.25
1558 1589 1.069227 CAGCGTGGTAGGCAGTTTTTC 60.069 52.381 0.00 0.00 0.00 2.29
1598 1637 5.923114 TCACAAAGAGATCTCTGAAAACTCG 59.077 40.000 25.78 10.34 40.36 4.18
1670 1714 0.593128 GAGGTGTTCAACGCAATGCT 59.407 50.000 2.94 0.00 0.00 3.79
1675 1719 0.521291 GTTCAACGCAATGCTGGCTA 59.479 50.000 2.94 0.00 0.00 3.93
1725 1769 2.359900 GTTGATCAAGATGGCCGAGTT 58.640 47.619 8.80 0.00 0.00 3.01
1736 1780 2.762745 TGGCCGAGTTAAGACTTTGAC 58.237 47.619 0.00 0.00 35.88 3.18
1738 1782 1.126296 GCCGAGTTAAGACTTTGACGC 59.874 52.381 0.00 0.00 35.88 5.19
1756 1801 1.374758 CGGACACAGGGAGAAGCAC 60.375 63.158 0.00 0.00 0.00 4.40
1790 1836 0.593128 GTTTTGGCGATGCTGTCACT 59.407 50.000 0.00 0.00 0.00 3.41
1863 1910 3.961477 TTGGTGTCAACAATCACTTCG 57.039 42.857 0.00 0.00 35.26 3.79
1895 1942 0.764271 TTGGTGGTGTGCTGATGAGA 59.236 50.000 0.00 0.00 0.00 3.27
1987 2038 4.513442 TGGACAATGCTCACAGGTATTAC 58.487 43.478 0.00 0.00 0.00 1.89
1994 2047 9.019656 ACAATGCTCACAGGTATTACAAAAATA 57.980 29.630 0.00 0.00 0.00 1.40
1999 2052 8.903820 GCTCACAGGTATTACAAAAATATTCCT 58.096 33.333 0.00 0.00 0.00 3.36
2011 2064 8.601845 ACAAAAATATTCCTGTTTTAGTTGCC 57.398 30.769 0.00 0.00 0.00 4.52
2022 2076 5.537188 TGTTTTAGTTGCCATTGTTGATCC 58.463 37.500 0.00 0.00 0.00 3.36
2028 2082 4.885907 AGTTGCCATTGTTGATCCTCTATG 59.114 41.667 0.00 0.00 0.00 2.23
2035 2089 6.017605 CCATTGTTGATCCTCTATGTAAGCAC 60.018 42.308 0.00 0.00 0.00 4.40
2038 2092 4.569761 TGATCCTCTATGTAAGCACGTC 57.430 45.455 0.00 0.00 0.00 4.34
2040 2094 1.674441 TCCTCTATGTAAGCACGTCGG 59.326 52.381 0.00 0.00 0.00 4.79
2045 2099 1.651987 ATGTAAGCACGTCGGGAATG 58.348 50.000 0.00 0.00 0.00 2.67
2050 2105 0.872388 AGCACGTCGGGAATGTTTTC 59.128 50.000 0.00 0.00 0.00 2.29
2079 2134 6.655003 CCTGGTATCTGTTGACAATAAACTGT 59.345 38.462 0.00 0.00 0.00 3.55
2107 2163 0.250467 AGACCAAGCTCGTGCAATGT 60.250 50.000 12.58 4.94 42.74 2.71
2109 2165 1.128692 GACCAAGCTCGTGCAATGTAC 59.871 52.381 12.58 0.00 42.74 2.90
2122 2178 4.552166 GCAATGTACGTTGCCATAGAAT 57.448 40.909 33.31 0.00 46.69 2.40
2126 2182 5.862924 ATGTACGTTGCCATAGAATATGC 57.137 39.130 0.00 0.00 0.00 3.14
2134 2190 2.426024 GCCATAGAATATGCCATGCCAG 59.574 50.000 0.00 0.00 0.00 4.85
2135 2191 3.021695 CCATAGAATATGCCATGCCAGG 58.978 50.000 0.00 0.00 0.00 4.45
2143 2199 0.608856 TGCCATGCCAGGTACAACAG 60.609 55.000 0.00 0.00 0.00 3.16
2146 2202 2.726821 CCATGCCAGGTACAACAGATT 58.273 47.619 0.00 0.00 0.00 2.40
2148 2204 3.346315 CATGCCAGGTACAACAGATTGA 58.654 45.455 0.00 0.00 39.30 2.57
2160 2216 4.039488 ACAACAGATTGATGGTGCAAATGT 59.961 37.500 0.00 0.00 41.82 2.71
2167 2223 3.155501 TGATGGTGCAAATGTCATGTGA 58.844 40.909 7.22 0.00 0.00 3.58
2186 2242 7.445096 TCATGTGATGAAGAAAGCAAAAGAGTA 59.555 33.333 0.00 0.00 36.11 2.59
2219 2275 1.195115 CTAGGCAAGGGCAGTGAGTA 58.805 55.000 0.00 0.00 43.71 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.124297 CACGTACAAAGCTAGCACACG 59.876 52.381 18.83 18.67 0.00 4.49
55 56 0.111266 CTCACAACGTGCTTGCGTAC 60.111 55.000 0.00 0.00 45.00 3.67
59 60 1.000233 CATGCTCACAACGTGCTTGC 61.000 55.000 0.00 0.00 34.01 4.01
66 67 1.028330 AGCCCATCATGCTCACAACG 61.028 55.000 0.00 0.00 32.41 4.10
69 70 0.549469 ATCAGCCCATCATGCTCACA 59.451 50.000 0.00 0.00 36.81 3.58
70 71 1.688772 AATCAGCCCATCATGCTCAC 58.311 50.000 0.00 0.00 36.81 3.51
76 77 5.893255 TGCTACTTTTAAATCAGCCCATCAT 59.107 36.000 11.49 0.00 0.00 2.45
116 117 9.259832 GGGCCCAGAATTAATATCTAAATCATT 57.740 33.333 19.95 0.00 0.00 2.57
117 118 7.557719 CGGGCCCAGAATTAATATCTAAATCAT 59.442 37.037 24.92 0.00 0.00 2.45
118 119 6.884295 CGGGCCCAGAATTAATATCTAAATCA 59.116 38.462 24.92 0.00 0.00 2.57
119 120 6.884836 ACGGGCCCAGAATTAATATCTAAATC 59.115 38.462 24.92 0.00 0.00 2.17
120 121 6.790319 ACGGGCCCAGAATTAATATCTAAAT 58.210 36.000 24.92 0.00 0.00 1.40
121 122 6.043938 AGACGGGCCCAGAATTAATATCTAAA 59.956 38.462 24.92 0.00 0.00 1.85
122 123 5.546499 AGACGGGCCCAGAATTAATATCTAA 59.454 40.000 24.92 0.00 0.00 2.10
123 124 5.046591 CAGACGGGCCCAGAATTAATATCTA 60.047 44.000 24.92 0.00 0.00 1.98
124 125 3.910627 AGACGGGCCCAGAATTAATATCT 59.089 43.478 24.92 7.81 0.00 1.98
155 156 1.840635 CTTCTGGGGTTAAGCTAGCCT 59.159 52.381 12.13 0.00 35.97 4.58
159 160 0.107848 GCGCTTCTGGGGTTAAGCTA 60.108 55.000 0.00 0.00 44.72 3.32
163 164 1.674322 GCAGCGCTTCTGGGGTTAA 60.674 57.895 7.50 0.00 43.06 2.01
178 179 4.693095 GTCTGACTAGGGAAGAAAAAGCAG 59.307 45.833 0.00 0.00 0.00 4.24
193 194 3.314307 AGGGGATGAATCGTCTGACTA 57.686 47.619 6.21 0.00 0.00 2.59
194 195 2.166907 AGGGGATGAATCGTCTGACT 57.833 50.000 6.21 0.00 0.00 3.41
282 285 4.338879 CAGATTGGTTCTCACCCTGATTT 58.661 43.478 0.00 0.00 43.49 2.17
284 287 2.356535 GCAGATTGGTTCTCACCCTGAT 60.357 50.000 0.00 0.00 43.49 2.90
300 303 2.180276 AGAGAACTTACACGGGCAGAT 58.820 47.619 0.00 0.00 0.00 2.90
308 311 7.716768 AAAGTAAGAGCAAGAGAACTTACAC 57.283 36.000 1.27 0.00 43.73 2.90
309 312 8.732746 AAAAAGTAAGAGCAAGAGAACTTACA 57.267 30.769 1.27 0.00 43.73 2.41
336 340 8.324191 ACCAGGTCAAGATAGATCTCATTTTA 57.676 34.615 0.00 0.00 35.76 1.52
340 344 7.955185 AGAATACCAGGTCAAGATAGATCTCAT 59.045 37.037 0.00 0.00 35.76 2.90
344 348 6.014669 AGCAGAATACCAGGTCAAGATAGATC 60.015 42.308 0.00 0.00 0.00 2.75
347 351 5.510520 GGAGCAGAATACCAGGTCAAGATAG 60.511 48.000 0.00 0.00 0.00 2.08
349 353 3.135530 GGAGCAGAATACCAGGTCAAGAT 59.864 47.826 0.00 0.00 0.00 2.40
351 355 2.503356 AGGAGCAGAATACCAGGTCAAG 59.497 50.000 0.00 0.00 0.00 3.02
357 361 4.272018 CGAAATCAAGGAGCAGAATACCAG 59.728 45.833 0.00 0.00 0.00 4.00
367 372 0.796312 TCGTTGCGAAATCAAGGAGC 59.204 50.000 0.00 0.00 36.36 4.70
392 397 8.746052 TCCAACAATGAGAGAAGAACTAAAAA 57.254 30.769 0.00 0.00 0.00 1.94
393 398 8.786898 CATCCAACAATGAGAGAAGAACTAAAA 58.213 33.333 0.00 0.00 0.00 1.52
396 401 6.213397 TCCATCCAACAATGAGAGAAGAACTA 59.787 38.462 0.00 0.00 0.00 2.24
399 404 5.503634 TCCATCCAACAATGAGAGAAGAA 57.496 39.130 0.00 0.00 0.00 2.52
400 405 5.427806 AGATCCATCCAACAATGAGAGAAGA 59.572 40.000 0.00 0.00 0.00 2.87
405 410 3.686405 GCCAGATCCATCCAACAATGAGA 60.686 47.826 0.00 0.00 0.00 3.27
406 411 2.621998 GCCAGATCCATCCAACAATGAG 59.378 50.000 0.00 0.00 0.00 2.90
407 412 2.242965 AGCCAGATCCATCCAACAATGA 59.757 45.455 0.00 0.00 0.00 2.57
408 413 2.662866 AGCCAGATCCATCCAACAATG 58.337 47.619 0.00 0.00 0.00 2.82
409 414 4.079558 ACTTAGCCAGATCCATCCAACAAT 60.080 41.667 0.00 0.00 0.00 2.71
410 415 3.266772 ACTTAGCCAGATCCATCCAACAA 59.733 43.478 0.00 0.00 0.00 2.83
411 416 2.846206 ACTTAGCCAGATCCATCCAACA 59.154 45.455 0.00 0.00 0.00 3.33
413 418 3.114606 TCACTTAGCCAGATCCATCCAA 58.885 45.455 0.00 0.00 0.00 3.53
416 421 5.809562 CGATTATCACTTAGCCAGATCCATC 59.190 44.000 0.00 0.00 0.00 3.51
417 422 5.247110 ACGATTATCACTTAGCCAGATCCAT 59.753 40.000 0.00 0.00 0.00 3.41
429 438 3.664107 AGCACACACACGATTATCACTT 58.336 40.909 0.00 0.00 0.00 3.16
431 440 2.348666 GGAGCACACACACGATTATCAC 59.651 50.000 0.00 0.00 0.00 3.06
435 444 1.337728 CCTGGAGCACACACACGATTA 60.338 52.381 0.00 0.00 0.00 1.75
467 476 4.504864 CCCAAAATATCACCCGCATCTAGA 60.505 45.833 0.00 0.00 0.00 2.43
491 500 1.636340 GACAACATCGATTCCGCCG 59.364 57.895 0.00 0.00 35.37 6.46
523 532 2.473816 CGCGAGCTTCATAGATGGAAA 58.526 47.619 0.00 0.00 0.00 3.13
531 540 2.202878 GTGCCCGCGAGCTTCATA 60.203 61.111 15.33 0.00 0.00 2.15
547 556 9.466277 GTTCAGAAGAAAGCACTTCAACGAAGT 62.466 40.741 16.39 3.55 45.83 3.01
548 557 4.271049 TCAGAAGAAAGCACTTCAACGAAG 59.729 41.667 16.39 2.22 45.83 3.79
550 559 3.792401 TCAGAAGAAAGCACTTCAACGA 58.208 40.909 16.39 9.44 45.83 3.85
551 560 4.274865 GTTCAGAAGAAAGCACTTCAACG 58.725 43.478 16.39 7.89 45.83 4.10
553 562 3.632145 GGGTTCAGAAGAAAGCACTTCAA 59.368 43.478 16.39 4.84 45.83 2.69
557 566 3.152341 CATGGGTTCAGAAGAAAGCACT 58.848 45.455 0.00 0.00 35.08 4.40
561 570 3.754965 TGTCCATGGGTTCAGAAGAAAG 58.245 45.455 13.02 0.00 35.08 2.62
567 576 0.325933 CTGCTGTCCATGGGTTCAGA 59.674 55.000 25.33 14.79 31.76 3.27
589 598 3.363178 CTTTTGAACTGGTCTTTGACGC 58.637 45.455 0.00 0.00 32.65 5.19
591 600 3.381590 AGCCTTTTGAACTGGTCTTTGAC 59.618 43.478 0.00 0.00 0.00 3.18
592 601 3.631250 AGCCTTTTGAACTGGTCTTTGA 58.369 40.909 0.00 0.00 0.00 2.69
594 603 2.959030 GGAGCCTTTTGAACTGGTCTTT 59.041 45.455 0.00 0.00 0.00 2.52
606 615 0.037447 GAGTCCAGCAGGAGCCTTTT 59.963 55.000 0.00 0.00 46.92 2.27
607 616 1.682257 GAGTCCAGCAGGAGCCTTT 59.318 57.895 0.00 0.00 46.92 3.11
608 617 2.654079 CGAGTCCAGCAGGAGCCTT 61.654 63.158 0.00 0.00 46.92 4.35
609 618 2.870035 ATCGAGTCCAGCAGGAGCCT 62.870 60.000 0.00 0.00 46.92 4.58
610 619 2.430610 ATCGAGTCCAGCAGGAGCC 61.431 63.158 0.00 0.00 46.92 4.70
611 620 1.227205 CATCGAGTCCAGCAGGAGC 60.227 63.158 0.00 0.00 46.92 4.70
612 621 1.326213 ACCATCGAGTCCAGCAGGAG 61.326 60.000 0.00 0.00 46.92 3.69
613 622 0.033503 TACCATCGAGTCCAGCAGGA 60.034 55.000 0.00 0.00 43.21 3.86
614 623 0.824109 TTACCATCGAGTCCAGCAGG 59.176 55.000 0.00 0.00 0.00 4.85
615 624 1.799181 CGTTACCATCGAGTCCAGCAG 60.799 57.143 0.00 0.00 0.00 4.24
616 625 0.172578 CGTTACCATCGAGTCCAGCA 59.827 55.000 0.00 0.00 0.00 4.41
617 626 0.454600 TCGTTACCATCGAGTCCAGC 59.545 55.000 0.00 0.00 33.38 4.85
618 627 2.527100 GTTCGTTACCATCGAGTCCAG 58.473 52.381 0.00 0.00 38.52 3.86
619 628 1.135603 CGTTCGTTACCATCGAGTCCA 60.136 52.381 0.00 0.00 38.52 4.02
620 629 1.542544 CGTTCGTTACCATCGAGTCC 58.457 55.000 0.00 0.00 38.52 3.85
621 630 1.131126 TCCGTTCGTTACCATCGAGTC 59.869 52.381 0.00 0.00 38.52 3.36
622 631 1.135575 GTCCGTTCGTTACCATCGAGT 60.136 52.381 0.00 0.00 38.52 4.18
623 632 1.135603 TGTCCGTTCGTTACCATCGAG 60.136 52.381 0.00 0.00 38.52 4.04
624 633 0.880441 TGTCCGTTCGTTACCATCGA 59.120 50.000 0.00 0.00 35.50 3.59
625 634 0.986992 GTGTCCGTTCGTTACCATCG 59.013 55.000 0.00 0.00 0.00 3.84
626 635 1.353076 GGTGTCCGTTCGTTACCATC 58.647 55.000 0.00 0.00 0.00 3.51
627 636 0.037046 GGGTGTCCGTTCGTTACCAT 60.037 55.000 0.00 0.00 33.10 3.55
628 637 1.367102 GGGTGTCCGTTCGTTACCA 59.633 57.895 0.00 0.00 33.10 3.25
629 638 0.037046 ATGGGTGTCCGTTCGTTACC 60.037 55.000 0.00 0.00 35.24 2.85
630 639 1.461897 CAATGGGTGTCCGTTCGTTAC 59.538 52.381 0.00 0.00 40.13 2.50
631 640 1.608542 CCAATGGGTGTCCGTTCGTTA 60.609 52.381 0.00 0.00 40.13 3.18
632 641 0.887387 CCAATGGGTGTCCGTTCGTT 60.887 55.000 0.00 0.00 40.13 3.85
633 642 1.302192 CCAATGGGTGTCCGTTCGT 60.302 57.895 0.00 0.00 40.13 3.85
634 643 3.573558 CCAATGGGTGTCCGTTCG 58.426 61.111 0.00 0.00 40.13 3.95
644 653 5.473066 ACAGAAAAGAAATGACCAATGGG 57.527 39.130 3.55 0.00 41.29 4.00
645 654 6.587608 GCTAACAGAAAAGAAATGACCAATGG 59.412 38.462 0.00 0.00 0.00 3.16
646 655 6.587608 GGCTAACAGAAAAGAAATGACCAATG 59.412 38.462 0.00 0.00 0.00 2.82
647 656 6.570378 CGGCTAACAGAAAAGAAATGACCAAT 60.570 38.462 0.00 0.00 0.00 3.16
648 657 5.278266 CGGCTAACAGAAAAGAAATGACCAA 60.278 40.000 0.00 0.00 0.00 3.67
649 658 4.215399 CGGCTAACAGAAAAGAAATGACCA 59.785 41.667 0.00 0.00 0.00 4.02
650 659 4.454504 TCGGCTAACAGAAAAGAAATGACC 59.545 41.667 0.00 0.00 0.00 4.02
651 660 5.607119 TCGGCTAACAGAAAAGAAATGAC 57.393 39.130 0.00 0.00 0.00 3.06
652 661 6.429692 TCATTCGGCTAACAGAAAAGAAATGA 59.570 34.615 0.00 0.00 0.00 2.57
653 662 6.611381 TCATTCGGCTAACAGAAAAGAAATG 58.389 36.000 0.00 0.00 0.00 2.32
654 663 6.817765 TCATTCGGCTAACAGAAAAGAAAT 57.182 33.333 0.00 0.00 0.00 2.17
655 664 6.817765 ATCATTCGGCTAACAGAAAAGAAA 57.182 33.333 0.00 0.00 0.00 2.52
656 665 6.655003 AGAATCATTCGGCTAACAGAAAAGAA 59.345 34.615 0.00 0.00 34.02 2.52
657 666 6.173339 AGAATCATTCGGCTAACAGAAAAGA 58.827 36.000 0.00 0.00 34.02 2.52
658 667 6.428385 AGAATCATTCGGCTAACAGAAAAG 57.572 37.500 0.00 0.00 34.02 2.27
659 668 6.037172 GCTAGAATCATTCGGCTAACAGAAAA 59.963 38.462 10.00 0.00 33.12 2.29
660 669 5.523916 GCTAGAATCATTCGGCTAACAGAAA 59.476 40.000 10.00 0.00 33.12 2.52
661 670 5.050490 GCTAGAATCATTCGGCTAACAGAA 58.950 41.667 10.00 0.00 33.12 3.02
662 671 4.342378 AGCTAGAATCATTCGGCTAACAGA 59.658 41.667 15.93 0.00 40.05 3.41
663 672 4.626042 AGCTAGAATCATTCGGCTAACAG 58.374 43.478 15.93 0.00 40.05 3.16
664 673 4.672587 AGCTAGAATCATTCGGCTAACA 57.327 40.909 15.93 0.00 40.05 2.41
665 674 7.171678 ACAATAAGCTAGAATCATTCGGCTAAC 59.828 37.037 17.21 0.00 40.59 2.34
666 675 7.217200 ACAATAAGCTAGAATCATTCGGCTAA 58.783 34.615 17.21 0.00 40.59 3.09
667 676 6.759272 ACAATAAGCTAGAATCATTCGGCTA 58.241 36.000 17.21 9.25 40.59 3.93
668 677 5.615289 ACAATAAGCTAGAATCATTCGGCT 58.385 37.500 12.95 12.95 42.20 5.52
669 678 5.931441 ACAATAAGCTAGAATCATTCGGC 57.069 39.130 9.44 9.44 34.97 5.54
670 679 9.817365 CAATTACAATAAGCTAGAATCATTCGG 57.183 33.333 0.00 0.00 34.02 4.30
671 680 9.322776 GCAATTACAATAAGCTAGAATCATTCG 57.677 33.333 0.00 0.00 34.02 3.34
672 681 9.617975 GGCAATTACAATAAGCTAGAATCATTC 57.382 33.333 0.00 0.00 0.00 2.67
673 682 9.359653 AGGCAATTACAATAAGCTAGAATCATT 57.640 29.630 0.00 0.00 0.00 2.57
674 683 8.790718 CAGGCAATTACAATAAGCTAGAATCAT 58.209 33.333 0.00 0.00 0.00 2.45
675 684 7.775093 ACAGGCAATTACAATAAGCTAGAATCA 59.225 33.333 0.00 0.00 0.00 2.57
676 685 8.159344 ACAGGCAATTACAATAAGCTAGAATC 57.841 34.615 0.00 0.00 0.00 2.52
677 686 9.627123 TTACAGGCAATTACAATAAGCTAGAAT 57.373 29.630 0.00 0.00 0.00 2.40
678 687 9.456147 TTTACAGGCAATTACAATAAGCTAGAA 57.544 29.630 0.00 0.00 0.00 2.10
679 688 9.456147 TTTTACAGGCAATTACAATAAGCTAGA 57.544 29.630 0.00 0.00 0.00 2.43
680 689 9.503427 GTTTTACAGGCAATTACAATAAGCTAG 57.497 33.333 0.00 0.00 0.00 3.42
681 690 8.178964 CGTTTTACAGGCAATTACAATAAGCTA 58.821 33.333 0.00 0.00 0.00 3.32
682 691 7.027161 CGTTTTACAGGCAATTACAATAAGCT 58.973 34.615 0.00 0.00 0.00 3.74
683 692 7.024768 TCGTTTTACAGGCAATTACAATAAGC 58.975 34.615 0.00 0.00 0.00 3.09
684 693 8.958175 TTCGTTTTACAGGCAATTACAATAAG 57.042 30.769 0.00 0.00 0.00 1.73
685 694 9.745880 TTTTCGTTTTACAGGCAATTACAATAA 57.254 25.926 0.00 0.00 0.00 1.40
686 695 9.182933 GTTTTCGTTTTACAGGCAATTACAATA 57.817 29.630 0.00 0.00 0.00 1.90
687 696 7.707035 TGTTTTCGTTTTACAGGCAATTACAAT 59.293 29.630 0.00 0.00 0.00 2.71
688 697 7.033791 TGTTTTCGTTTTACAGGCAATTACAA 58.966 30.769 0.00 0.00 0.00 2.41
689 698 6.561614 TGTTTTCGTTTTACAGGCAATTACA 58.438 32.000 0.00 0.00 0.00 2.41
690 699 7.452630 TTGTTTTCGTTTTACAGGCAATTAC 57.547 32.000 0.00 0.00 0.00 1.89
691 700 6.199342 GCTTGTTTTCGTTTTACAGGCAATTA 59.801 34.615 0.00 0.00 42.39 1.40
692 701 5.006261 GCTTGTTTTCGTTTTACAGGCAATT 59.994 36.000 0.00 0.00 42.39 2.32
693 702 4.506288 GCTTGTTTTCGTTTTACAGGCAAT 59.494 37.500 0.00 0.00 42.39 3.56
694 703 3.860536 GCTTGTTTTCGTTTTACAGGCAA 59.139 39.130 0.00 0.00 42.39 4.52
695 704 3.440228 GCTTGTTTTCGTTTTACAGGCA 58.560 40.909 0.00 0.00 42.39 4.75
696 705 2.466205 CGCTTGTTTTCGTTTTACAGGC 59.534 45.455 0.00 0.00 40.29 4.85
697 706 2.466205 GCGCTTGTTTTCGTTTTACAGG 59.534 45.455 0.00 0.00 0.00 4.00
698 707 3.102276 TGCGCTTGTTTTCGTTTTACAG 58.898 40.909 9.73 0.00 0.00 2.74
699 708 3.132629 TGCGCTTGTTTTCGTTTTACA 57.867 38.095 9.73 0.00 0.00 2.41
700 709 3.121496 CCATGCGCTTGTTTTCGTTTTAC 60.121 43.478 20.40 0.00 0.00 2.01
701 710 3.046390 CCATGCGCTTGTTTTCGTTTTA 58.954 40.909 20.40 0.00 0.00 1.52
702 711 1.857837 CCATGCGCTTGTTTTCGTTTT 59.142 42.857 20.40 0.00 0.00 2.43
703 712 1.066303 TCCATGCGCTTGTTTTCGTTT 59.934 42.857 20.40 0.00 0.00 3.60
704 713 0.665835 TCCATGCGCTTGTTTTCGTT 59.334 45.000 20.40 0.00 0.00 3.85
705 714 0.665835 TTCCATGCGCTTGTTTTCGT 59.334 45.000 20.40 0.00 0.00 3.85
706 715 1.069296 TCTTCCATGCGCTTGTTTTCG 60.069 47.619 20.40 6.38 0.00 3.46
707 716 2.030805 ACTCTTCCATGCGCTTGTTTTC 60.031 45.455 20.40 0.00 0.00 2.29
708 717 1.956477 ACTCTTCCATGCGCTTGTTTT 59.044 42.857 20.40 0.00 0.00 2.43
709 718 1.609208 ACTCTTCCATGCGCTTGTTT 58.391 45.000 20.40 0.00 0.00 2.83
710 719 1.537202 GAACTCTTCCATGCGCTTGTT 59.463 47.619 20.40 8.18 0.00 2.83
711 720 1.160137 GAACTCTTCCATGCGCTTGT 58.840 50.000 20.40 1.52 0.00 3.16
712 721 0.095935 CGAACTCTTCCATGCGCTTG 59.904 55.000 15.90 15.90 0.00 4.01
713 722 1.639298 GCGAACTCTTCCATGCGCTT 61.639 55.000 9.73 0.00 41.09 4.68
714 723 2.103042 GCGAACTCTTCCATGCGCT 61.103 57.895 9.73 0.00 41.09 5.92
715 724 2.401195 GCGAACTCTTCCATGCGC 59.599 61.111 0.00 0.00 37.60 6.09
716 725 2.464459 GGGCGAACTCTTCCATGCG 61.464 63.158 0.00 0.00 0.00 4.73
717 726 2.464459 CGGGCGAACTCTTCCATGC 61.464 63.158 0.00 0.00 0.00 4.06
718 727 1.815421 CCGGGCGAACTCTTCCATG 60.815 63.158 0.00 0.00 0.00 3.66
719 728 2.584608 CCGGGCGAACTCTTCCAT 59.415 61.111 0.00 0.00 0.00 3.41
720 729 3.702048 CCCGGGCGAACTCTTCCA 61.702 66.667 8.08 0.00 0.00 3.53
721 730 4.468689 CCCCGGGCGAACTCTTCC 62.469 72.222 17.73 0.00 0.00 3.46
722 731 4.468689 CCCCCGGGCGAACTCTTC 62.469 72.222 17.73 0.00 0.00 2.87
750 759 7.497925 AAAATTGGCTATAAAACGGCAAAAA 57.502 28.000 2.46 0.00 46.52 1.94
751 760 7.497925 AAAAATTGGCTATAAAACGGCAAAA 57.502 28.000 2.46 0.00 46.52 2.44
752 761 7.148557 GCTAAAAATTGGCTATAAAACGGCAAA 60.149 33.333 2.46 0.00 46.52 3.68
753 762 7.792468 AGCTAAAAATTGGCTATAAAACGGCAA 60.792 33.333 0.00 0.00 46.27 4.52
754 763 5.808030 GCTAAAAATTGGCTATAAAACGGCA 59.192 36.000 0.00 0.00 33.94 5.69
755 764 6.040247 AGCTAAAAATTGGCTATAAAACGGC 58.960 36.000 0.00 0.00 46.27 5.68
756 765 7.378728 GCTAGCTAAAAATTGGCTATAAAACGG 59.621 37.037 7.70 0.00 46.53 4.44
757 766 8.129211 AGCTAGCTAAAAATTGGCTATAAAACG 58.871 33.333 17.69 0.00 46.53 3.60
758 767 9.803315 AAGCTAGCTAAAAATTGGCTATAAAAC 57.197 29.630 19.70 0.00 46.53 2.43
759 768 9.801873 CAAGCTAGCTAAAAATTGGCTATAAAA 57.198 29.630 19.70 0.00 46.53 1.52
760 769 9.184523 TCAAGCTAGCTAAAAATTGGCTATAAA 57.815 29.630 19.70 0.00 46.53 1.40
761 770 8.746052 TCAAGCTAGCTAAAAATTGGCTATAA 57.254 30.769 19.70 0.00 46.53 0.98
762 771 8.746052 TTCAAGCTAGCTAAAAATTGGCTATA 57.254 30.769 19.70 0.00 46.53 1.31
763 772 7.645058 TTCAAGCTAGCTAAAAATTGGCTAT 57.355 32.000 19.70 0.00 46.53 2.97
764 773 7.040062 TGTTTCAAGCTAGCTAAAAATTGGCTA 60.040 33.333 19.70 7.74 46.27 3.93
766 775 5.925969 TGTTTCAAGCTAGCTAAAAATTGGC 59.074 36.000 19.70 9.70 37.42 4.52
767 776 6.922957 TGTGTTTCAAGCTAGCTAAAAATTGG 59.077 34.615 19.70 0.80 0.00 3.16
768 777 7.862372 TCTGTGTTTCAAGCTAGCTAAAAATTG 59.138 33.333 19.70 11.66 0.00 2.32
769 778 7.940850 TCTGTGTTTCAAGCTAGCTAAAAATT 58.059 30.769 19.70 0.00 0.00 1.82
770 779 7.510549 TCTGTGTTTCAAGCTAGCTAAAAAT 57.489 32.000 19.70 0.00 0.00 1.82
771 780 6.935741 TCTGTGTTTCAAGCTAGCTAAAAA 57.064 33.333 19.70 17.68 0.00 1.94
772 781 7.510549 AATCTGTGTTTCAAGCTAGCTAAAA 57.489 32.000 19.70 18.03 0.00 1.52
773 782 7.510549 AAATCTGTGTTTCAAGCTAGCTAAA 57.489 32.000 19.70 13.15 0.00 1.85
774 783 7.510549 AAAATCTGTGTTTCAAGCTAGCTAA 57.489 32.000 19.70 6.77 0.00 3.09
775 784 7.228507 TGAAAAATCTGTGTTTCAAGCTAGCTA 59.771 33.333 19.70 0.00 40.00 3.32
776 785 6.039717 TGAAAAATCTGTGTTTCAAGCTAGCT 59.960 34.615 12.68 12.68 40.00 3.32
777 786 6.208644 TGAAAAATCTGTGTTTCAAGCTAGC 58.791 36.000 6.62 6.62 40.00 3.42
784 793 7.069331 ACACCCTATTGAAAAATCTGTGTTTCA 59.931 33.333 0.00 0.00 40.93 2.69
785 794 7.433680 ACACCCTATTGAAAAATCTGTGTTTC 58.566 34.615 0.00 0.00 34.88 2.78
786 795 7.069331 TGACACCCTATTGAAAAATCTGTGTTT 59.931 33.333 0.00 0.00 34.83 2.83
787 796 6.549364 TGACACCCTATTGAAAAATCTGTGTT 59.451 34.615 0.00 0.00 34.83 3.32
788 797 6.068010 TGACACCCTATTGAAAAATCTGTGT 58.932 36.000 0.00 0.00 37.15 3.72
789 798 6.573664 TGACACCCTATTGAAAAATCTGTG 57.426 37.500 0.00 0.00 0.00 3.66
790 799 6.947733 TGATGACACCCTATTGAAAAATCTGT 59.052 34.615 0.00 0.00 0.00 3.41
791 800 7.121759 AGTGATGACACCCTATTGAAAAATCTG 59.878 37.037 0.00 0.00 46.99 2.90
792 801 7.121759 CAGTGATGACACCCTATTGAAAAATCT 59.878 37.037 0.00 0.00 46.99 2.40
793 802 7.094205 ACAGTGATGACACCCTATTGAAAAATC 60.094 37.037 0.00 0.00 46.99 2.17
794 803 6.721208 ACAGTGATGACACCCTATTGAAAAAT 59.279 34.615 0.00 0.00 46.99 1.82
795 804 6.068010 ACAGTGATGACACCCTATTGAAAAA 58.932 36.000 0.00 0.00 46.99 1.94
796 805 5.630121 ACAGTGATGACACCCTATTGAAAA 58.370 37.500 0.00 0.00 46.99 2.29
797 806 5.241403 ACAGTGATGACACCCTATTGAAA 57.759 39.130 0.00 0.00 46.99 2.69
798 807 4.908601 ACAGTGATGACACCCTATTGAA 57.091 40.909 0.00 0.00 46.99 2.69
799 808 4.405680 CCTACAGTGATGACACCCTATTGA 59.594 45.833 0.00 0.00 46.99 2.57
800 809 4.697514 CCTACAGTGATGACACCCTATTG 58.302 47.826 0.00 0.00 46.99 1.90
801 810 3.134804 GCCTACAGTGATGACACCCTATT 59.865 47.826 0.00 0.00 46.99 1.73
802 811 2.700897 GCCTACAGTGATGACACCCTAT 59.299 50.000 0.00 0.00 46.99 2.57
803 812 2.108168 GCCTACAGTGATGACACCCTA 58.892 52.381 0.00 0.00 46.99 3.53
804 813 0.905357 GCCTACAGTGATGACACCCT 59.095 55.000 0.00 0.00 46.99 4.34
805 814 0.613260 TGCCTACAGTGATGACACCC 59.387 55.000 0.00 0.00 46.99 4.61
806 815 2.472695 TTGCCTACAGTGATGACACC 57.527 50.000 0.00 0.00 46.99 4.16
807 816 6.494893 TTTTATTGCCTACAGTGATGACAC 57.505 37.500 0.00 0.00 46.24 3.67
853 862 9.113876 GACGTAAACATGGTAATTCTGAAAAAG 57.886 33.333 0.00 0.00 0.00 2.27
864 874 1.275856 AGCCGGACGTAAACATGGTAA 59.724 47.619 5.05 0.00 0.00 2.85
866 876 0.672401 CAGCCGGACGTAAACATGGT 60.672 55.000 5.05 0.00 0.00 3.55
869 879 1.435577 GTTCAGCCGGACGTAAACAT 58.564 50.000 5.05 0.00 0.00 2.71
872 882 0.320073 CTGGTTCAGCCGGACGTAAA 60.320 55.000 5.05 0.00 46.81 2.01
876 887 1.153823 CTACTGGTTCAGCCGGACG 60.154 63.158 5.05 0.00 46.81 4.79
877 888 0.606604 TTCTACTGGTTCAGCCGGAC 59.393 55.000 5.05 0.00 46.81 4.79
880 891 4.250464 TGTATTTTCTACTGGTTCAGCCG 58.750 43.478 0.00 0.00 41.21 5.52
882 893 6.803154 AACTGTATTTTCTACTGGTTCAGC 57.197 37.500 0.00 0.00 34.37 4.26
886 897 7.446319 GGGTGTTAACTGTATTTTCTACTGGTT 59.554 37.037 7.22 0.00 0.00 3.67
914 926 9.280174 CAACCCTAATACTGTAGTTCTCAAAAA 57.720 33.333 0.00 0.00 0.00 1.94
920 932 4.781087 TGCCAACCCTAATACTGTAGTTCT 59.219 41.667 0.00 0.00 0.00 3.01
921 938 5.093849 TGCCAACCCTAATACTGTAGTTC 57.906 43.478 0.00 0.00 0.00 3.01
926 943 2.620627 GCCTTGCCAACCCTAATACTGT 60.621 50.000 0.00 0.00 0.00 3.55
931 948 0.251608 AACGCCTTGCCAACCCTAAT 60.252 50.000 0.00 0.00 0.00 1.73
937 954 0.321298 TCCTCTAACGCCTTGCCAAC 60.321 55.000 0.00 0.00 0.00 3.77
950 967 1.692762 GGTTGGCATCCCTCTCCTCTA 60.693 57.143 3.03 0.00 0.00 2.43
954 971 1.863155 TTGGGTTGGCATCCCTCTCC 61.863 60.000 29.06 7.81 44.84 3.71
1011 1028 2.949106 CCAGCCTTGTTGTCTGCG 59.051 61.111 0.00 0.00 0.00 5.18
1031 1048 2.811431 CCGAGTGCCAGATTAACAACAA 59.189 45.455 0.00 0.00 0.00 2.83
1043 1060 1.067142 CAAAGCTAGTACCGAGTGCCA 60.067 52.381 0.00 0.00 0.00 4.92
1053 1070 4.587262 TCCTCAACTGTGTCAAAGCTAGTA 59.413 41.667 0.00 0.00 0.00 1.82
1074 1091 4.694037 AGGTTGTAAAACTCATACGCTTCC 59.306 41.667 0.00 0.00 43.11 3.46
1107 1124 0.539438 TCACGCCAAAGCCCATCTTT 60.539 50.000 0.00 0.00 45.43 2.52
1108 1125 0.962356 CTCACGCCAAAGCCCATCTT 60.962 55.000 0.00 0.00 36.34 2.40
1137 1154 1.079503 GATGGACGTTCAACCTGCTC 58.920 55.000 0.00 0.00 0.00 4.26
1160 1177 6.164876 TCCTGCATACATTTTGTCCATTTTG 58.835 36.000 0.00 0.00 0.00 2.44
1161 1178 6.014327 ACTCCTGCATACATTTTGTCCATTTT 60.014 34.615 0.00 0.00 0.00 1.82
1162 1179 5.481473 ACTCCTGCATACATTTTGTCCATTT 59.519 36.000 0.00 0.00 0.00 2.32
1163 1180 5.018809 ACTCCTGCATACATTTTGTCCATT 58.981 37.500 0.00 0.00 0.00 3.16
1164 1181 4.603131 ACTCCTGCATACATTTTGTCCAT 58.397 39.130 0.00 0.00 0.00 3.41
1165 1182 4.032960 ACTCCTGCATACATTTTGTCCA 57.967 40.909 0.00 0.00 0.00 4.02
1166 1183 4.458989 TGAACTCCTGCATACATTTTGTCC 59.541 41.667 0.00 0.00 0.00 4.02
1167 1184 5.627499 TGAACTCCTGCATACATTTTGTC 57.373 39.130 0.00 0.00 0.00 3.18
1168 1185 5.477984 ACATGAACTCCTGCATACATTTTGT 59.522 36.000 0.00 0.00 0.00 2.83
1169 1186 5.803461 CACATGAACTCCTGCATACATTTTG 59.197 40.000 0.00 0.00 0.00 2.44
1239 1260 1.878953 AAAGGTACGTGCACAGGAAG 58.121 50.000 18.64 2.02 0.00 3.46
1245 1266 5.062558 ACATAATACGAAAAGGTACGTGCAC 59.937 40.000 6.82 6.82 42.61 4.57
1281 1307 1.897560 CCCTGTGTCTTTCCCAGAAC 58.102 55.000 0.00 0.00 31.28 3.01
1283 1309 1.059584 TGCCCTGTGTCTTTCCCAGA 61.060 55.000 0.00 0.00 0.00 3.86
1284 1310 0.178992 TTGCCCTGTGTCTTTCCCAG 60.179 55.000 0.00 0.00 0.00 4.45
1285 1311 0.178992 CTTGCCCTGTGTCTTTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
1286 1312 1.527433 GCTTGCCCTGTGTCTTTCCC 61.527 60.000 0.00 0.00 0.00 3.97
1287 1313 1.527433 GGCTTGCCCTGTGTCTTTCC 61.527 60.000 0.00 0.00 0.00 3.13
1288 1314 0.823356 TGGCTTGCCCTGTGTCTTTC 60.823 55.000 9.35 0.00 0.00 2.62
1292 1318 1.588082 CAATGGCTTGCCCTGTGTC 59.412 57.895 9.35 0.00 0.00 3.67
1329 1359 1.968017 CAGCGCATCCACACCTTGT 60.968 57.895 11.47 0.00 0.00 3.16
1373 1403 3.741075 CGCATATGTACCATCCCGCATAT 60.741 47.826 4.29 0.00 35.61 1.78
1374 1404 2.418060 CGCATATGTACCATCCCGCATA 60.418 50.000 4.29 0.00 0.00 3.14
1377 1407 0.037697 TCGCATATGTACCATCCCGC 60.038 55.000 4.29 0.00 0.00 6.13
1378 1408 2.066262 GTTCGCATATGTACCATCCCG 58.934 52.381 4.29 0.00 0.00 5.14
1448 1478 1.133823 TGCCAGTGTGATTTCCAGTGT 60.134 47.619 0.00 0.00 32.49 3.55
1483 1513 2.171448 AGCTGTTTCACCAAGTCTCTGT 59.829 45.455 0.00 0.00 0.00 3.41
1525 1555 0.163788 CACGCTGTAAACCTTGCTCG 59.836 55.000 0.00 0.00 0.00 5.03
1547 1577 2.175715 ACCTCCTTCAGAAAAACTGCCT 59.824 45.455 0.00 0.00 45.38 4.75
1558 1589 3.981071 TGTGAATGGTACCTCCTTCAG 57.019 47.619 19.11 0.00 35.59 3.02
1598 1637 5.065988 TGCTCTCTGTTAAGTTTTCCACAAC 59.934 40.000 0.00 0.00 0.00 3.32
1641 1682 4.612939 GCGTTGAACACCTCTATTGTTTCC 60.613 45.833 0.00 0.00 37.31 3.13
1642 1683 4.024387 TGCGTTGAACACCTCTATTGTTTC 60.024 41.667 0.00 0.00 37.31 2.78
1670 1714 8.325787 TGTATTTAAACTCAGGATCTTTAGCCA 58.674 33.333 0.00 0.00 31.71 4.75
1699 1743 3.209410 GGCCATCTTGATCAACCTACAG 58.791 50.000 3.38 0.00 0.00 2.74
1713 1757 3.260884 TCAAAGTCTTAACTCGGCCATCT 59.739 43.478 2.24 0.00 33.48 2.90
1725 1769 1.067364 TGTGTCCGCGTCAAAGTCTTA 59.933 47.619 4.92 0.00 0.00 2.10
1736 1780 2.125912 CTTCTCCCTGTGTCCGCG 60.126 66.667 0.00 0.00 0.00 6.46
1738 1782 1.374758 GTGCTTCTCCCTGTGTCCG 60.375 63.158 0.00 0.00 0.00 4.79
1756 1801 4.044426 GCCAAAACACTTAAACTGCTCAG 58.956 43.478 0.00 0.00 0.00 3.35
1817 1863 0.814457 GACCAAACGGCATGCCATAA 59.186 50.000 34.93 0.00 35.37 1.90
1863 1910 5.334028 GCACACCACCAAAAATAATGCTTTC 60.334 40.000 0.00 0.00 0.00 2.62
1895 1942 6.708054 ACTTGAAAGTGTCGATTTTCTCATCT 59.292 34.615 16.03 0.00 37.98 2.90
1987 2038 8.600449 TGGCAACTAAAACAGGAATATTTTTG 57.400 30.769 0.00 0.00 37.61 2.44
1994 2047 5.806654 ACAATGGCAACTAAAACAGGAAT 57.193 34.783 0.00 0.00 37.61 3.01
1999 2052 5.304101 AGGATCAACAATGGCAACTAAAACA 59.696 36.000 0.00 0.00 37.61 2.83
2000 2053 5.783111 AGGATCAACAATGGCAACTAAAAC 58.217 37.500 0.00 0.00 37.61 2.43
2003 2056 4.922206 AGAGGATCAACAATGGCAACTAA 58.078 39.130 0.00 0.00 37.82 2.24
2011 2064 6.292542 CGTGCTTACATAGAGGATCAACAATG 60.293 42.308 0.00 0.00 37.82 2.82
2022 2076 1.674441 TCCCGACGTGCTTACATAGAG 59.326 52.381 0.00 0.00 0.00 2.43
2028 2082 1.435577 AACATTCCCGACGTGCTTAC 58.564 50.000 0.00 0.00 0.00 2.34
2062 2117 7.543868 TGAAACCAAACAGTTTATTGTCAACAG 59.456 33.333 0.00 0.00 40.01 3.16
2122 2178 1.283321 TGTTGTACCTGGCATGGCATA 59.717 47.619 23.59 10.53 0.00 3.14
2126 2182 2.424601 CAATCTGTTGTACCTGGCATGG 59.575 50.000 0.00 0.00 0.00 3.66
2134 2190 3.081061 TGCACCATCAATCTGTTGTACC 58.919 45.455 0.00 0.00 36.69 3.34
2135 2191 4.764679 TTGCACCATCAATCTGTTGTAC 57.235 40.909 0.00 0.00 36.69 2.90
2143 2199 4.565166 CACATGACATTTGCACCATCAATC 59.435 41.667 0.00 0.00 0.00 2.67
2146 2202 3.155501 TCACATGACATTTGCACCATCA 58.844 40.909 0.00 0.00 0.00 3.07
2148 2204 3.764972 TCATCACATGACATTTGCACCAT 59.235 39.130 0.00 0.00 33.59 3.55
2160 2216 6.263842 ACTCTTTTGCTTTCTTCATCACATGA 59.736 34.615 0.00 0.00 37.55 3.07
2167 2223 7.094032 CCCAAGATACTCTTTTGCTTTCTTCAT 60.094 37.037 0.00 0.00 33.78 2.57
2186 2242 1.918253 CCTAGCAGTGGCCCAAGAT 59.082 57.895 0.00 0.00 42.56 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.