Multiple sequence alignment - TraesCS2B01G555300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G555300 chr2B 100.000 4894 0 0 1 4894 750009321 750014214 0.000000e+00 9038.0
1 TraesCS2B01G555300 chr2A 89.048 2520 171 60 499 2976 745663103 745665559 0.000000e+00 3027.0
2 TraesCS2B01G555300 chr2A 91.057 615 48 5 4282 4894 745666979 745667588 0.000000e+00 824.0
3 TraesCS2B01G555300 chr2A 86.720 753 58 14 3495 4218 745666236 745666975 0.000000e+00 798.0
4 TraesCS2B01G555300 chr2A 86.207 377 39 11 157 524 745662711 745663083 3.550000e-106 396.0
5 TraesCS2B01G555300 chr2A 84.138 290 14 13 3076 3354 745665562 745665830 8.130000e-63 252.0
6 TraesCS2B01G555300 chr2D 90.270 1665 92 30 1345 2976 615901885 615903512 0.000000e+00 2113.0
7 TraesCS2B01G555300 chr2D 89.490 628 58 6 3349 3970 615903972 615904597 0.000000e+00 787.0
8 TraesCS2B01G555300 chr2D 91.897 543 39 3 4352 4894 616150188 616150725 0.000000e+00 754.0
9 TraesCS2B01G555300 chr2D 90.494 547 45 4 4353 4894 616058449 616058993 0.000000e+00 715.0
10 TraesCS2B01G555300 chr2D 88.017 459 53 2 4437 4894 615942976 615943433 4.310000e-150 542.0
11 TraesCS2B01G555300 chr2D 87.097 403 48 2 1034 1436 615714842 615715240 2.080000e-123 453.0
12 TraesCS2B01G555300 chr2D 85.424 295 17 14 3065 3357 615903507 615903777 2.880000e-72 283.0
13 TraesCS2B01G555300 chr2D 80.441 363 56 13 1577 1937 615715471 615715820 3.760000e-66 263.0
14 TraesCS2B01G555300 chr2D 87.448 239 15 4 3972 4210 615922067 615922290 1.350000e-65 261.0
15 TraesCS2B01G555300 chr2D 87.444 223 25 1 1131 1353 615864528 615864747 2.260000e-63 254.0
16 TraesCS2B01G555300 chr2D 77.405 447 74 19 3265 3698 615852703 615853135 1.760000e-59 241.0
17 TraesCS2B01G555300 chr2D 80.392 306 50 8 2319 2616 615716388 615716691 1.770000e-54 224.0
18 TraesCS2B01G555300 chr2D 83.636 110 9 6 4289 4393 615942337 615942442 1.450000e-15 95.3
19 TraesCS2B01G555300 chr2D 79.032 124 20 6 173 291 112889622 112889744 4.060000e-11 80.5
20 TraesCS2B01G555300 chr4D 77.778 333 58 14 175 497 484780027 484779701 1.800000e-44 191.0
21 TraesCS2B01G555300 chr4D 87.826 115 12 1 29 143 248969685 248969797 3.070000e-27 134.0
22 TraesCS2B01G555300 chr5A 77.987 318 57 12 157 467 691924206 691923895 2.330000e-43 187.0
23 TraesCS2B01G555300 chr4A 75.682 403 72 22 175 565 106370304 106369916 1.400000e-40 178.0
24 TraesCS2B01G555300 chr7D 89.313 131 12 2 29 158 15334804 15334933 3.920000e-36 163.0
25 TraesCS2B01G555300 chr3D 94.340 106 6 0 53 158 285810679 285810784 3.920000e-36 163.0
26 TraesCS2B01G555300 chr4B 88.462 130 15 0 29 158 606815389 606815260 1.820000e-34 158.0
27 TraesCS2B01G555300 chr4B 86.087 115 14 1 29 143 252065199 252065311 6.650000e-24 122.0
28 TraesCS2B01G555300 chr4B 85.455 110 16 0 49 158 68851304 68851195 1.110000e-21 115.0
29 TraesCS2B01G555300 chr7A 89.831 118 11 1 42 158 279191286 279191403 3.050000e-32 150.0
30 TraesCS2B01G555300 chr7A 89.908 109 10 1 51 158 279203815 279203923 6.610000e-29 139.0
31 TraesCS2B01G555300 chr5D 76.976 291 49 17 171 453 332586627 332586907 3.050000e-32 150.0
32 TraesCS2B01G555300 chr3B 87.705 122 15 0 29 150 823759679 823759558 5.110000e-30 143.0
33 TraesCS2B01G555300 chr3B 79.130 115 20 2 175 285 26443670 26443784 5.250000e-10 76.8
34 TraesCS2B01G555300 chr6D 82.524 103 14 4 187 286 154183630 154183731 2.430000e-13 87.9
35 TraesCS2B01G555300 chr5B 75.956 183 33 11 186 362 638753198 638753021 3.140000e-12 84.2
36 TraesCS2B01G555300 chr1A 78.448 116 21 4 175 286 552418603 552418488 6.800000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G555300 chr2B 750009321 750014214 4893 False 9038.000000 9038 100.000000 1 4894 1 chr2B.!!$F1 4893
1 TraesCS2B01G555300 chr2A 745662711 745667588 4877 False 1059.400000 3027 87.434000 157 4894 5 chr2A.!!$F1 4737
2 TraesCS2B01G555300 chr2D 615901885 615904597 2712 False 1061.000000 2113 88.394667 1345 3970 3 chr2D.!!$F8 2625
3 TraesCS2B01G555300 chr2D 616150188 616150725 537 False 754.000000 754 91.897000 4352 4894 1 chr2D.!!$F6 542
4 TraesCS2B01G555300 chr2D 616058449 616058993 544 False 715.000000 715 90.494000 4353 4894 1 chr2D.!!$F5 541
5 TraesCS2B01G555300 chr2D 615942337 615943433 1096 False 318.650000 542 85.826500 4289 4894 2 chr2D.!!$F9 605
6 TraesCS2B01G555300 chr2D 615714842 615716691 1849 False 313.333333 453 82.643333 1034 2616 3 chr2D.!!$F7 1582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
798 863 0.107508 CGGCCCATATATGCTCCCTG 60.108 60.0 7.24 0.0 0.00 4.45 F
953 1038 0.179029 CCTCCACCGGCGGAATTAAT 60.179 55.0 35.78 5.6 33.65 1.40 F
969 1054 0.179156 TAATCCGACACGAGCGAACC 60.179 55.0 0.00 0.0 0.00 3.62 F
975 1060 0.599204 GACACGAGCGAACCCTCAAA 60.599 55.0 0.00 0.0 0.00 2.69 F
977 1062 0.878523 CACGAGCGAACCCTCAAACA 60.879 55.0 0.00 0.0 0.00 2.83 F
1705 1905 1.021968 AACTCTGCAAAACGTCACCC 58.978 50.0 0.00 0.0 0.00 4.61 F
3003 3410 0.457509 CTTCGCGAGTCTGCTCACAT 60.458 55.0 9.59 0.0 41.71 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2590 2990 0.173708 GACTCGCGAAGGTCCTCATT 59.826 55.000 11.33 0.0 0.00 2.57 R
2658 3062 1.064803 CCGTCTCAGATCAGACCTTCG 59.935 57.143 7.43 0.0 39.90 3.79 R
2747 3153 1.613630 ACGCCTCCTCCATCCAAGT 60.614 57.895 0.00 0.0 0.00 3.16 R
2755 3161 1.833787 TTAACACCCACGCCTCCTCC 61.834 60.000 0.00 0.0 0.00 4.30 R
2976 3383 1.034838 AGACTCGCGAAGGCTCTCAT 61.035 55.000 11.33 0.0 40.37 2.90 R
3545 4356 0.884704 TTTGCTGAAGGCGGAGTGTC 60.885 55.000 0.00 0.0 45.43 3.67 R
4059 4897 0.036010 ACTCCAGCGTTCCATCCAAG 60.036 55.000 0.00 0.0 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.731503 CGTCGTCGTCGTCCGCTT 62.732 66.667 3.67 0.00 38.33 4.68
19 20 3.164011 GTCGTCGTCGTCCGCTTG 61.164 66.667 1.33 0.00 38.33 4.01
20 21 4.394078 TCGTCGTCGTCCGCTTGG 62.394 66.667 1.33 0.00 38.33 3.61
21 22 4.394078 CGTCGTCGTCCGCTTGGA 62.394 66.667 0.00 0.00 40.32 3.53
31 32 3.423154 CGCTTGGACCGCAACCTC 61.423 66.667 0.00 0.00 0.00 3.85
32 33 3.423154 GCTTGGACCGCAACCTCG 61.423 66.667 0.00 0.00 0.00 4.63
33 34 2.342279 CTTGGACCGCAACCTCGA 59.658 61.111 0.00 0.00 0.00 4.04
34 35 2.027625 CTTGGACCGCAACCTCGAC 61.028 63.158 0.00 0.00 0.00 4.20
35 36 3.524648 TTGGACCGCAACCTCGACC 62.525 63.158 0.00 0.00 0.00 4.79
41 42 3.112709 GCAACCTCGACCGCAGTC 61.113 66.667 0.00 0.00 39.83 3.51
42 43 2.338620 CAACCTCGACCGCAGTCA 59.661 61.111 0.20 0.00 43.73 3.41
43 44 2.022129 CAACCTCGACCGCAGTCAC 61.022 63.158 0.20 0.00 43.73 3.67
44 45 3.553437 AACCTCGACCGCAGTCACG 62.553 63.158 0.20 0.00 43.73 4.35
45 46 4.039357 CCTCGACCGCAGTCACGT 62.039 66.667 0.20 0.00 43.73 4.49
46 47 2.502080 CTCGACCGCAGTCACGTC 60.502 66.667 0.20 0.00 43.73 4.34
47 48 3.948086 CTCGACCGCAGTCACGTCC 62.948 68.421 0.20 0.00 43.73 4.79
68 69 4.717629 GCCGGAAAAGCGGCCAAC 62.718 66.667 5.05 0.00 44.75 3.77
69 70 3.291383 CCGGAAAAGCGGCCAACA 61.291 61.111 2.24 0.00 0.00 3.33
70 71 2.725008 CGGAAAAGCGGCCAACAA 59.275 55.556 2.24 0.00 0.00 2.83
71 72 1.288752 CGGAAAAGCGGCCAACAAT 59.711 52.632 2.24 0.00 0.00 2.71
72 73 0.523966 CGGAAAAGCGGCCAACAATA 59.476 50.000 2.24 0.00 0.00 1.90
73 74 1.134175 CGGAAAAGCGGCCAACAATAT 59.866 47.619 2.24 0.00 0.00 1.28
74 75 2.356382 CGGAAAAGCGGCCAACAATATA 59.644 45.455 2.24 0.00 0.00 0.86
75 76 3.004315 CGGAAAAGCGGCCAACAATATAT 59.996 43.478 2.24 0.00 0.00 0.86
76 77 4.499019 CGGAAAAGCGGCCAACAATATATT 60.499 41.667 2.24 0.00 0.00 1.28
77 78 4.982295 GGAAAAGCGGCCAACAATATATTC 59.018 41.667 2.24 0.00 0.00 1.75
78 79 5.451242 GGAAAAGCGGCCAACAATATATTCA 60.451 40.000 2.24 0.00 0.00 2.57
79 80 5.590530 AAAGCGGCCAACAATATATTCAA 57.409 34.783 2.24 0.00 0.00 2.69
80 81 5.789643 AAGCGGCCAACAATATATTCAAT 57.210 34.783 2.24 0.00 0.00 2.57
81 82 5.376854 AGCGGCCAACAATATATTCAATC 57.623 39.130 2.24 0.00 0.00 2.67
82 83 5.072741 AGCGGCCAACAATATATTCAATCT 58.927 37.500 2.24 0.00 0.00 2.40
83 84 5.182001 AGCGGCCAACAATATATTCAATCTC 59.818 40.000 2.24 0.00 0.00 2.75
84 85 5.619981 GCGGCCAACAATATATTCAATCTCC 60.620 44.000 2.24 0.00 0.00 3.71
85 86 5.473162 CGGCCAACAATATATTCAATCTCCA 59.527 40.000 2.24 0.00 0.00 3.86
86 87 6.151648 CGGCCAACAATATATTCAATCTCCAT 59.848 38.462 2.24 0.00 0.00 3.41
87 88 7.318141 GGCCAACAATATATTCAATCTCCATG 58.682 38.462 0.00 0.00 0.00 3.66
88 89 7.177216 GGCCAACAATATATTCAATCTCCATGA 59.823 37.037 0.00 0.00 0.00 3.07
89 90 8.025445 GCCAACAATATATTCAATCTCCATGAC 58.975 37.037 0.00 0.00 0.00 3.06
90 91 9.293404 CCAACAATATATTCAATCTCCATGACT 57.707 33.333 0.00 0.00 0.00 3.41
100 101 8.985315 TTCAATCTCCATGACTAAATTATGCT 57.015 30.769 0.00 0.00 0.00 3.79
101 102 8.613060 TCAATCTCCATGACTAAATTATGCTC 57.387 34.615 0.00 0.00 0.00 4.26
102 103 8.435187 TCAATCTCCATGACTAAATTATGCTCT 58.565 33.333 0.00 0.00 0.00 4.09
103 104 9.716531 CAATCTCCATGACTAAATTATGCTCTA 57.283 33.333 0.00 0.00 0.00 2.43
104 105 9.941325 AATCTCCATGACTAAATTATGCTCTAG 57.059 33.333 0.00 0.00 0.00 2.43
105 106 7.901029 TCTCCATGACTAAATTATGCTCTAGG 58.099 38.462 0.00 0.00 0.00 3.02
106 107 7.009179 TCCATGACTAAATTATGCTCTAGGG 57.991 40.000 0.00 0.00 0.00 3.53
107 108 6.558775 TCCATGACTAAATTATGCTCTAGGGT 59.441 38.462 0.00 0.00 0.00 4.34
108 109 7.072454 TCCATGACTAAATTATGCTCTAGGGTT 59.928 37.037 0.00 0.00 0.00 4.11
109 110 7.721399 CCATGACTAAATTATGCTCTAGGGTTT 59.279 37.037 0.00 0.00 0.00 3.27
110 111 9.778741 CATGACTAAATTATGCTCTAGGGTTTA 57.221 33.333 0.00 0.00 0.00 2.01
112 113 9.209048 TGACTAAATTATGCTCTAGGGTTTAGA 57.791 33.333 13.74 0.00 33.90 2.10
121 122 8.910351 ATGCTCTAGGGTTTAGAATTTACATC 57.090 34.615 0.00 0.00 0.00 3.06
122 123 8.090788 TGCTCTAGGGTTTAGAATTTACATCT 57.909 34.615 0.00 0.00 0.00 2.90
123 124 8.548877 TGCTCTAGGGTTTAGAATTTACATCTT 58.451 33.333 0.00 0.00 0.00 2.40
168 169 8.574251 AGTTGTACATCTTATGTTTATTGCCA 57.426 30.769 0.00 0.00 41.63 4.92
175 176 9.461312 ACATCTTATGTTTATTGCCACTAAGAA 57.539 29.630 0.00 0.00 41.63 2.52
300 303 5.857268 ACCAAAAATCTATAATGGGCATGC 58.143 37.500 9.90 9.90 35.44 4.06
425 429 7.361889 TGTTGAACGTGTACTGAAAAAGTTA 57.638 32.000 0.00 0.00 40.56 2.24
440 444 8.818141 TGAAAAAGTTAACATGTGTTGAACAA 57.182 26.923 8.61 0.00 43.61 2.83
481 488 9.553418 AAAATCAACAAAAATCCAAGAAAAACG 57.447 25.926 0.00 0.00 0.00 3.60
483 490 7.284518 TCAACAAAAATCCAAGAAAAACGAC 57.715 32.000 0.00 0.00 0.00 4.34
487 494 9.594478 AACAAAAATCCAAGAAAAACGACTAAT 57.406 25.926 0.00 0.00 0.00 1.73
565 608 8.094798 AGGAAACAAGGAAAAACAAAGAAAAC 57.905 30.769 0.00 0.00 0.00 2.43
566 609 7.717436 AGGAAACAAGGAAAAACAAAGAAAACA 59.283 29.630 0.00 0.00 0.00 2.83
576 619 8.846943 AAAAACAAAGAAAACAGATGAAACCT 57.153 26.923 0.00 0.00 0.00 3.50
580 623 8.519799 ACAAAGAAAACAGATGAAACCTAGAA 57.480 30.769 0.00 0.00 0.00 2.10
582 625 9.801873 CAAAGAAAACAGATGAAACCTAGAAAA 57.198 29.630 0.00 0.00 0.00 2.29
583 626 9.803315 AAAGAAAACAGATGAAACCTAGAAAAC 57.197 29.630 0.00 0.00 0.00 2.43
598 655 8.089115 ACCTAGAAAACGAAGAATGAAGAAAG 57.911 34.615 0.00 0.00 0.00 2.62
606 663 9.508567 AAACGAAGAATGAAGAAAGAAAGAAAG 57.491 29.630 0.00 0.00 0.00 2.62
607 664 8.438676 ACGAAGAATGAAGAAAGAAAGAAAGA 57.561 30.769 0.00 0.00 0.00 2.52
658 717 5.276461 ACCACAGACAAAAAGGAAAATCC 57.724 39.130 0.00 0.00 36.58 3.01
665 724 6.698766 CAGACAAAAAGGAAAATCCAGTGAAG 59.301 38.462 0.00 0.00 39.61 3.02
671 730 5.053978 AGGAAAATCCAGTGAAGACAGTT 57.946 39.130 0.00 0.00 39.61 3.16
686 748 9.073368 GTGAAGACAGTTAAAAAGGAAGAAAAC 57.927 33.333 0.00 0.00 0.00 2.43
687 749 8.248253 TGAAGACAGTTAAAAAGGAAGAAAACC 58.752 33.333 0.00 0.00 0.00 3.27
699 761 8.657074 AAAGGAAGAAAACCGGAAATAAAAAG 57.343 30.769 9.46 0.00 0.00 2.27
700 762 6.220930 AGGAAGAAAACCGGAAATAAAAAGC 58.779 36.000 9.46 0.00 0.00 3.51
734 799 2.292016 CAGAGAGAACAGTGACACGAGT 59.708 50.000 0.00 0.25 0.00 4.18
740 805 2.209838 ACAGTGACACGAGTGAACTG 57.790 50.000 26.24 26.24 45.33 3.16
741 806 1.749063 ACAGTGACACGAGTGAACTGA 59.251 47.619 30.51 0.66 44.06 3.41
742 807 2.223595 ACAGTGACACGAGTGAACTGAG 60.224 50.000 30.51 17.26 44.06 3.35
743 808 1.132588 GTGACACGAGTGAACTGAGC 58.867 55.000 10.50 0.00 0.00 4.26
744 809 0.317854 TGACACGAGTGAACTGAGCG 60.318 55.000 10.50 0.00 0.00 5.03
746 811 0.384309 ACACGAGTGAACTGAGCGAA 59.616 50.000 10.50 0.00 0.00 4.70
747 812 0.778815 CACGAGTGAACTGAGCGAAC 59.221 55.000 0.00 0.00 0.00 3.95
748 813 0.384309 ACGAGTGAACTGAGCGAACA 59.616 50.000 0.00 0.00 0.00 3.18
749 814 1.056103 CGAGTGAACTGAGCGAACAG 58.944 55.000 7.54 7.54 42.78 3.16
755 820 3.456798 CTGAGCGAACAGTGCGAG 58.543 61.111 4.63 0.00 37.44 5.03
756 821 1.081175 CTGAGCGAACAGTGCGAGA 60.081 57.895 4.63 0.00 37.44 4.04
757 822 1.069924 CTGAGCGAACAGTGCGAGAG 61.070 60.000 4.63 0.00 37.44 3.20
758 823 1.803519 GAGCGAACAGTGCGAGAGG 60.804 63.158 4.63 0.00 37.44 3.69
759 824 3.482783 GCGAACAGTGCGAGAGGC 61.483 66.667 4.63 0.00 43.96 4.70
768 833 4.334837 GCGAGAGGCACTATCTGC 57.665 61.111 0.00 0.00 45.73 4.26
771 836 2.069465 CGAGAGGCACTATCTGCGCT 62.069 60.000 9.73 0.00 45.73 5.92
790 855 2.238898 GCTAAAGGACCGGCCCATATAT 59.761 50.000 10.37 0.00 37.37 0.86
793 858 0.547712 AGGACCGGCCCATATATGCT 60.548 55.000 10.37 0.00 37.37 3.79
795 860 0.107654 GACCGGCCCATATATGCTCC 60.108 60.000 0.00 8.90 0.00 4.70
796 861 1.224592 CCGGCCCATATATGCTCCC 59.775 63.158 7.24 5.94 0.00 4.30
798 863 0.107508 CGGCCCATATATGCTCCCTG 60.108 60.000 7.24 0.00 0.00 4.45
802 883 2.936993 GCCCATATATGCTCCCTGTTCG 60.937 54.545 7.24 0.00 0.00 3.95
820 901 4.722700 CACCCTTCTGGCCCACCG 62.723 72.222 0.00 0.00 39.70 4.94
823 904 2.359975 CCTTCTGGCCCACCGTTC 60.360 66.667 0.00 0.00 39.70 3.95
824 905 2.359975 CTTCTGGCCCACCGTTCC 60.360 66.667 0.00 0.00 39.70 3.62
837 918 2.049526 GTTCCGGCCGGCAAAAAG 60.050 61.111 39.89 14.64 34.68 2.27
845 930 2.135139 GGCCGGCAAAAAGAAAAAGAG 58.865 47.619 30.85 0.00 0.00 2.85
846 931 2.223947 GGCCGGCAAAAAGAAAAAGAGA 60.224 45.455 30.85 0.00 0.00 3.10
876 961 3.056832 ACTAAAATCCCATCCCCTCCTC 58.943 50.000 0.00 0.00 0.00 3.71
893 978 2.193248 CGCCCTCCTTCCATTCCC 59.807 66.667 0.00 0.00 0.00 3.97
917 1002 4.366684 CCGCCCCTTCTTGCCCTT 62.367 66.667 0.00 0.00 0.00 3.95
918 1003 2.283173 CGCCCCTTCTTGCCCTTT 60.283 61.111 0.00 0.00 0.00 3.11
919 1004 2.639327 CGCCCCTTCTTGCCCTTTG 61.639 63.158 0.00 0.00 0.00 2.77
920 1005 2.947532 GCCCCTTCTTGCCCTTTGC 61.948 63.158 0.00 0.00 41.77 3.68
921 1006 2.285773 CCCCTTCTTGCCCTTTGCC 61.286 63.158 0.00 0.00 40.16 4.52
922 1007 2.285773 CCCTTCTTGCCCTTTGCCC 61.286 63.158 0.00 0.00 40.16 5.36
923 1008 1.228988 CCTTCTTGCCCTTTGCCCT 60.229 57.895 0.00 0.00 40.16 5.19
924 1009 1.253593 CCTTCTTGCCCTTTGCCCTC 61.254 60.000 0.00 0.00 40.16 4.30
925 1010 1.228862 TTCTTGCCCTTTGCCCTCC 60.229 57.895 0.00 0.00 40.16 4.30
926 1011 2.681421 CTTGCCCTTTGCCCTCCC 60.681 66.667 0.00 0.00 40.16 4.30
927 1012 4.315264 TTGCCCTTTGCCCTCCCC 62.315 66.667 0.00 0.00 40.16 4.81
939 1024 4.465446 CTCCCCTCGCCTCCTCCA 62.465 72.222 0.00 0.00 0.00 3.86
949 1034 3.470888 CTCCTCCACCGGCGGAAT 61.471 66.667 35.78 8.46 36.03 3.01
953 1038 0.179029 CCTCCACCGGCGGAATTAAT 60.179 55.000 35.78 5.60 33.65 1.40
969 1054 0.179156 TAATCCGACACGAGCGAACC 60.179 55.000 0.00 0.00 0.00 3.62
970 1055 2.830704 AATCCGACACGAGCGAACCC 62.831 60.000 0.00 0.00 0.00 4.11
971 1056 4.052229 CCGACACGAGCGAACCCT 62.052 66.667 0.00 0.00 0.00 4.34
972 1057 2.504244 CGACACGAGCGAACCCTC 60.504 66.667 0.00 0.00 0.00 4.30
973 1058 2.649034 GACACGAGCGAACCCTCA 59.351 61.111 0.00 0.00 0.00 3.86
974 1059 1.006571 GACACGAGCGAACCCTCAA 60.007 57.895 0.00 0.00 0.00 3.02
975 1060 0.599204 GACACGAGCGAACCCTCAAA 60.599 55.000 0.00 0.00 0.00 2.69
976 1061 0.878961 ACACGAGCGAACCCTCAAAC 60.879 55.000 0.00 0.00 0.00 2.93
977 1062 0.878523 CACGAGCGAACCCTCAAACA 60.879 55.000 0.00 0.00 0.00 2.83
1006 1091 1.203001 TCAAACCCTCAACCATGGGAC 60.203 52.381 18.09 0.00 46.15 4.46
1008 1093 2.137177 AACCCTCAACCATGGGACCG 62.137 60.000 18.09 0.87 46.15 4.79
1132 1217 3.484547 GTAGCAACGGAACCGGCG 61.485 66.667 17.44 0.00 44.69 6.46
1133 1218 3.993584 TAGCAACGGAACCGGCGT 61.994 61.111 17.44 0.00 44.69 5.68
1159 1244 4.514577 CCTGCGTCGGCCCTACTG 62.515 72.222 0.00 0.00 38.85 2.74
1299 1384 2.993853 GGACAGGGCAGGAAGGAG 59.006 66.667 0.00 0.00 0.00 3.69
1432 1517 3.181454 CGGCACCCTCTCAGGTATAAAAT 60.181 47.826 0.00 0.00 38.39 1.82
1435 1520 4.718961 CACCCTCTCAGGTATAAAATGGG 58.281 47.826 0.00 0.00 38.39 4.00
1467 1655 9.490379 AATGTAGGATCGAGAATGTTATTTACC 57.510 33.333 0.00 0.00 0.00 2.85
1700 1900 3.507786 GTTTTCCAACTCTGCAAAACGT 58.492 40.909 0.00 0.00 31.14 3.99
1705 1905 1.021968 AACTCTGCAAAACGTCACCC 58.978 50.000 0.00 0.00 0.00 4.61
1753 1953 4.568760 GGATCTGTGTTCTACAAGCTAAGC 59.431 45.833 0.00 0.00 39.20 3.09
1834 2034 2.930682 GCTAGGTGAGTTAAAGGCTTCG 59.069 50.000 0.00 0.00 0.00 3.79
1970 2286 4.330620 CAGTTTTCTGTGCTTGTTTTGCAT 59.669 37.500 0.00 0.00 42.69 3.96
2073 2394 6.465035 GCTTCTCAGGTATGATATTTCCACCT 60.465 42.308 2.03 2.03 36.97 4.00
2074 2395 7.256332 GCTTCTCAGGTATGATATTTCCACCTA 60.256 40.741 6.33 0.00 35.27 3.08
2075 2396 8.561536 TTCTCAGGTATGATATTTCCACCTAA 57.438 34.615 6.33 0.00 35.27 2.69
2387 2783 7.574496 TCAATTGCATTGAAATTGTAACAAGC 58.426 30.769 23.45 0.00 45.57 4.01
2397 2793 1.316651 TGTAACAAGCTGCATGCACA 58.683 45.000 18.46 7.85 45.94 4.57
2405 2801 3.074504 AGCTGCATGCACATTTTATCG 57.925 42.857 18.46 4.73 45.94 2.92
2406 2802 2.424601 AGCTGCATGCACATTTTATCGT 59.575 40.909 18.46 0.00 45.94 3.73
2478 2876 2.297033 GCAAACCTGTGACATTGACCAT 59.703 45.455 1.87 0.00 0.00 3.55
2504 2903 9.356433 TCGAAGATACATATACGTTTGAAAACA 57.644 29.630 0.00 0.00 38.81 2.83
2558 2958 7.839680 TGAGACAATGGATAAGTGATAGCTA 57.160 36.000 0.00 0.00 0.00 3.32
2590 2990 4.458989 AGCGAAATATGAAGGCTGTTTCAA 59.541 37.500 0.00 0.00 40.21 2.69
2605 3005 1.438651 TTCAAATGAGGACCTTCGCG 58.561 50.000 0.00 0.00 0.00 5.87
2612 3012 1.303398 AGGACCTTCGCGAGTCTGA 60.303 57.895 22.81 3.03 33.39 3.27
2665 3069 6.963049 ACAAATGTACAGATTACGAAGGTC 57.037 37.500 0.33 0.00 0.00 3.85
2666 3070 6.698380 ACAAATGTACAGATTACGAAGGTCT 58.302 36.000 0.33 0.00 0.00 3.85
2667 3071 6.590292 ACAAATGTACAGATTACGAAGGTCTG 59.410 38.462 0.33 0.00 43.76 3.51
2670 3076 6.132791 TGTACAGATTACGAAGGTCTGATC 57.867 41.667 15.01 0.00 41.38 2.92
2682 3088 1.677052 GGTCTGATCTGAGACGGTACC 59.323 57.143 0.16 0.16 42.97 3.34
2684 3090 1.283905 TCTGATCTGAGACGGTACCCA 59.716 52.381 6.25 0.00 0.00 4.51
2689 3095 3.657398 TCTGAGACGGTACCCATCTAA 57.343 47.619 12.32 5.68 0.00 2.10
2747 3153 6.655930 ACAGTACCTTCTTTACCACTTTTGA 58.344 36.000 0.00 0.00 0.00 2.69
2755 3161 6.633500 TCTTTACCACTTTTGACTTGGATG 57.367 37.500 0.00 0.00 34.24 3.51
2838 3244 4.858850 TGCATTTGGAACATCCTGTAGAT 58.141 39.130 0.00 0.00 39.30 1.98
2854 3260 2.645838 AGATCACACCAGTTGTTGCT 57.354 45.000 0.00 0.00 35.67 3.91
2858 3264 2.722094 TCACACCAGTTGTTGCTTCTT 58.278 42.857 0.00 0.00 35.67 2.52
2873 3280 3.569701 TGCTTCTTTCCAATGAACTGGTC 59.430 43.478 0.00 0.00 37.74 4.02
2892 3299 2.494870 GTCTTTTGCTGAATCCAGGCAT 59.505 45.455 0.00 0.00 40.72 4.40
2906 3313 4.464008 TCCAGGCATGTGGAGAATAAATC 58.536 43.478 0.95 0.00 41.99 2.17
2907 3314 3.251729 CCAGGCATGTGGAGAATAAATCG 59.748 47.826 0.00 0.00 40.44 3.34
2948 3355 6.583562 ACAATGTCTAAGTGATAGCTAACCC 58.416 40.000 0.00 0.00 0.00 4.11
2953 3360 3.646736 AAGTGATAGCTAACCCCCAAC 57.353 47.619 0.00 0.00 0.00 3.77
2954 3361 2.557869 AGTGATAGCTAACCCCCAACA 58.442 47.619 0.00 0.00 0.00 3.33
2983 3390 4.526970 TGAAGGGGTTTTCATATGAGAGC 58.473 43.478 5.39 8.39 32.39 4.09
2984 3391 3.584733 AGGGGTTTTCATATGAGAGCC 57.415 47.619 21.90 21.90 0.00 4.70
2985 3392 3.126453 AGGGGTTTTCATATGAGAGCCT 58.874 45.455 25.73 15.82 31.61 4.58
2986 3393 3.529319 AGGGGTTTTCATATGAGAGCCTT 59.471 43.478 25.73 20.41 31.61 4.35
2987 3394 3.885901 GGGGTTTTCATATGAGAGCCTTC 59.114 47.826 25.73 16.84 31.61 3.46
2988 3395 3.561725 GGGTTTTCATATGAGAGCCTTCG 59.438 47.826 22.90 0.00 31.61 3.79
2989 3396 3.002759 GGTTTTCATATGAGAGCCTTCGC 59.997 47.826 18.47 0.00 0.00 4.70
2990 3397 2.140065 TTCATATGAGAGCCTTCGCG 57.860 50.000 5.39 0.00 41.18 5.87
2991 3398 1.318576 TCATATGAGAGCCTTCGCGA 58.681 50.000 3.71 3.71 41.18 5.87
2992 3399 1.268079 TCATATGAGAGCCTTCGCGAG 59.732 52.381 9.59 0.00 41.18 5.03
2993 3400 1.000827 CATATGAGAGCCTTCGCGAGT 60.001 52.381 9.59 0.00 41.18 4.18
2994 3401 0.663688 TATGAGAGCCTTCGCGAGTC 59.336 55.000 9.59 5.32 41.18 3.36
2995 3402 1.034838 ATGAGAGCCTTCGCGAGTCT 61.035 55.000 9.59 10.40 41.18 3.24
2996 3403 1.226547 GAGAGCCTTCGCGAGTCTG 60.227 63.158 9.59 0.02 41.18 3.51
2997 3404 2.883253 GAGCCTTCGCGAGTCTGC 60.883 66.667 9.59 10.88 41.18 4.26
2998 3405 3.349481 GAGCCTTCGCGAGTCTGCT 62.349 63.158 19.11 19.11 41.18 4.24
2999 3406 2.883253 GCCTTCGCGAGTCTGCTC 60.883 66.667 9.59 0.00 38.35 4.26
3000 3407 2.568612 CCTTCGCGAGTCTGCTCA 59.431 61.111 9.59 0.00 41.71 4.26
3001 3408 1.803519 CCTTCGCGAGTCTGCTCAC 60.804 63.158 9.59 0.00 41.71 3.51
3002 3409 1.081175 CTTCGCGAGTCTGCTCACA 60.081 57.895 9.59 0.00 41.71 3.58
3003 3410 0.457509 CTTCGCGAGTCTGCTCACAT 60.458 55.000 9.59 0.00 41.71 3.21
3004 3411 0.808755 TTCGCGAGTCTGCTCACATA 59.191 50.000 9.59 0.00 41.71 2.29
3005 3412 0.808755 TCGCGAGTCTGCTCACATAA 59.191 50.000 3.71 0.00 41.71 1.90
3006 3413 1.405463 TCGCGAGTCTGCTCACATAAT 59.595 47.619 3.71 0.00 41.71 1.28
3007 3414 2.616842 TCGCGAGTCTGCTCACATAATA 59.383 45.455 3.71 0.00 41.71 0.98
3008 3415 3.066203 TCGCGAGTCTGCTCACATAATAA 59.934 43.478 3.71 0.00 41.71 1.40
3009 3416 3.796717 CGCGAGTCTGCTCACATAATAAA 59.203 43.478 0.00 0.00 41.71 1.40
3010 3417 4.445718 CGCGAGTCTGCTCACATAATAAAT 59.554 41.667 0.00 0.00 41.71 1.40
3011 3418 5.050769 CGCGAGTCTGCTCACATAATAAATT 60.051 40.000 0.00 0.00 41.71 1.82
3012 3419 6.510157 CGCGAGTCTGCTCACATAATAAATTT 60.510 38.462 0.00 0.00 41.71 1.82
3013 3420 6.848296 GCGAGTCTGCTCACATAATAAATTTC 59.152 38.462 0.00 0.00 41.71 2.17
3014 3421 7.348201 CGAGTCTGCTCACATAATAAATTTCC 58.652 38.462 0.00 0.00 41.71 3.13
3015 3422 7.011389 CGAGTCTGCTCACATAATAAATTTCCA 59.989 37.037 0.00 0.00 41.71 3.53
3016 3423 8.757982 AGTCTGCTCACATAATAAATTTCCAT 57.242 30.769 0.00 0.00 0.00 3.41
3017 3424 9.851686 AGTCTGCTCACATAATAAATTTCCATA 57.148 29.630 0.00 0.00 0.00 2.74
3020 3427 9.903682 CTGCTCACATAATAAATTTCCATAAGG 57.096 33.333 0.00 0.00 0.00 2.69
3021 3428 9.639563 TGCTCACATAATAAATTTCCATAAGGA 57.360 29.630 0.00 0.00 43.93 3.36
3037 3444 7.907389 TCCATAAGGAATCATGATACTGGTAC 58.093 38.462 9.04 0.00 42.23 3.34
3038 3445 7.734865 TCCATAAGGAATCATGATACTGGTACT 59.265 37.037 9.04 0.00 42.23 2.73
3039 3446 8.378565 CCATAAGGAATCATGATACTGGTACTT 58.621 37.037 9.04 7.77 36.89 2.24
3040 3447 9.212641 CATAAGGAATCATGATACTGGTACTTG 57.787 37.037 9.04 0.00 0.00 3.16
3041 3448 6.814954 AGGAATCATGATACTGGTACTTGT 57.185 37.500 9.04 0.00 0.00 3.16
3042 3449 7.200434 AGGAATCATGATACTGGTACTTGTT 57.800 36.000 9.04 0.00 0.00 2.83
3043 3450 8.319057 AGGAATCATGATACTGGTACTTGTTA 57.681 34.615 9.04 0.00 0.00 2.41
3044 3451 8.424918 AGGAATCATGATACTGGTACTTGTTAG 58.575 37.037 9.04 0.00 0.00 2.34
3045 3452 8.204836 GGAATCATGATACTGGTACTTGTTAGT 58.795 37.037 9.04 0.00 38.44 2.24
3046 3453 9.601217 GAATCATGATACTGGTACTTGTTAGTT 57.399 33.333 9.04 0.00 35.78 2.24
3047 3454 9.601217 AATCATGATACTGGTACTTGTTAGTTC 57.399 33.333 9.04 0.00 35.78 3.01
3048 3455 8.129496 TCATGATACTGGTACTTGTTAGTTCA 57.871 34.615 0.00 0.00 35.78 3.18
3049 3456 8.758829 TCATGATACTGGTACTTGTTAGTTCAT 58.241 33.333 0.00 0.00 35.78 2.57
3050 3457 8.820933 CATGATACTGGTACTTGTTAGTTCATG 58.179 37.037 0.00 0.00 35.31 3.07
3051 3458 7.903145 TGATACTGGTACTTGTTAGTTCATGT 58.097 34.615 0.00 0.00 35.78 3.21
3052 3459 9.027202 TGATACTGGTACTTGTTAGTTCATGTA 57.973 33.333 0.00 0.00 35.78 2.29
3053 3460 9.298774 GATACTGGTACTTGTTAGTTCATGTAC 57.701 37.037 11.66 11.66 42.70 2.90
3054 3461 6.154445 ACTGGTACTTGTTAGTTCATGTACG 58.846 40.000 12.91 0.00 43.51 3.67
3055 3462 4.925054 TGGTACTTGTTAGTTCATGTACGC 59.075 41.667 12.91 8.92 43.51 4.42
3056 3463 4.925054 GGTACTTGTTAGTTCATGTACGCA 59.075 41.667 12.91 0.00 43.51 5.24
3057 3464 5.579511 GGTACTTGTTAGTTCATGTACGCAT 59.420 40.000 12.91 0.00 43.51 4.73
3058 3465 6.753279 GGTACTTGTTAGTTCATGTACGCATA 59.247 38.462 12.91 0.00 43.51 3.14
3059 3466 7.276218 GGTACTTGTTAGTTCATGTACGCATAA 59.724 37.037 12.91 0.00 43.51 1.90
3060 3467 7.057149 ACTTGTTAGTTCATGTACGCATAAC 57.943 36.000 0.00 0.00 33.30 1.89
3061 3468 6.647481 ACTTGTTAGTTCATGTACGCATAACA 59.353 34.615 10.01 10.01 33.30 2.41
3062 3469 7.171848 ACTTGTTAGTTCATGTACGCATAACAA 59.828 33.333 18.69 18.69 36.76 2.83
3063 3470 7.422878 TGTTAGTTCATGTACGCATAACAAA 57.577 32.000 11.07 0.00 30.28 2.83
3064 3471 8.035165 TGTTAGTTCATGTACGCATAACAAAT 57.965 30.769 11.07 0.00 30.28 2.32
3065 3472 8.508062 TGTTAGTTCATGTACGCATAACAAATT 58.492 29.630 11.07 0.00 30.28 1.82
3066 3473 9.337091 GTTAGTTCATGTACGCATAACAAATTT 57.663 29.630 7.69 0.00 33.30 1.82
3067 3474 9.549509 TTAGTTCATGTACGCATAACAAATTTC 57.450 29.630 0.00 0.00 33.30 2.17
3068 3475 7.589395 AGTTCATGTACGCATAACAAATTTCA 58.411 30.769 0.00 0.00 33.30 2.69
3069 3476 8.243426 AGTTCATGTACGCATAACAAATTTCAT 58.757 29.630 0.00 0.00 33.30 2.57
3070 3477 7.967771 TCATGTACGCATAACAAATTTCATG 57.032 32.000 0.00 0.00 33.30 3.07
3071 3478 6.471841 TCATGTACGCATAACAAATTTCATGC 59.528 34.615 14.64 14.64 40.27 4.06
3072 3479 5.703876 TGTACGCATAACAAATTTCATGCA 58.296 33.333 20.50 0.00 43.10 3.96
3073 3480 6.152379 TGTACGCATAACAAATTTCATGCAA 58.848 32.000 20.50 10.75 43.10 4.08
3184 3602 7.161829 CATGCTTTATGTTCTCATGATTTGC 57.838 36.000 0.00 0.00 37.34 3.68
3243 3662 6.479001 ACGAATTCACATATGTACAGCTTACC 59.521 38.462 8.32 0.00 0.00 2.85
3246 3665 7.792374 ATTCACATATGTACAGCTTACCAAG 57.208 36.000 8.32 0.00 0.00 3.61
3251 3670 1.278127 TGTACAGCTTACCAAGGCCTC 59.722 52.381 5.23 0.00 0.00 4.70
3284 3703 3.007506 TGCACTCATCTTTACCTTTCGGA 59.992 43.478 0.00 0.00 0.00 4.55
3301 3720 7.230712 ACCTTTCGGATGTTTCTTATTGTTTCT 59.769 33.333 0.00 0.00 0.00 2.52
3308 3727 8.237267 GGATGTTTCTTATTGTTTCTGTACCTG 58.763 37.037 0.00 0.00 0.00 4.00
3364 3991 1.182667 GGGGCATGGGTGTTAAGTTC 58.817 55.000 0.00 0.00 0.00 3.01
3407 4034 4.685924 AGACTTGCATTTTGAACACCTTG 58.314 39.130 0.00 0.00 0.00 3.61
3416 4043 5.689383 TTTTGAACACCTTGTAGAGCATC 57.311 39.130 0.00 0.00 0.00 3.91
3440 4067 6.072508 TCAGCTGTTGTTTCTATCCAATGAAC 60.073 38.462 14.67 0.00 0.00 3.18
3443 4070 6.573664 TGTTGTTTCTATCCAATGAACTGG 57.426 37.500 0.00 0.00 37.87 4.00
3458 4085 4.067896 TGAACTGGATCTTTTGCTGAGTC 58.932 43.478 0.00 0.00 0.00 3.36
3459 4086 3.064900 ACTGGATCTTTTGCTGAGTCC 57.935 47.619 0.00 0.00 0.00 3.85
3468 4095 0.671472 TTGCTGAGTCCAGACATGCG 60.671 55.000 0.00 0.00 43.02 4.73
3483 4110 2.224079 ACATGCGTTTGATCACTGACAC 59.776 45.455 0.00 0.00 0.00 3.67
3514 4325 7.470935 TGTAGCTACTGAATTTGGTAGTGTA 57.529 36.000 23.84 0.00 38.06 2.90
3515 4326 7.318141 TGTAGCTACTGAATTTGGTAGTGTAC 58.682 38.462 23.84 15.71 38.06 2.90
3539 4350 5.527582 CGGGTAGGATCTACTGGAATTTTTG 59.472 44.000 5.26 0.00 0.00 2.44
3541 4352 5.828328 GGTAGGATCTACTGGAATTTTTGGG 59.172 44.000 5.26 0.00 0.00 4.12
3542 4353 4.281657 AGGATCTACTGGAATTTTTGGGC 58.718 43.478 0.00 0.00 0.00 5.36
3543 4354 4.023291 GGATCTACTGGAATTTTTGGGCA 58.977 43.478 0.00 0.00 0.00 5.36
3545 4356 5.394553 GGATCTACTGGAATTTTTGGGCAAG 60.395 44.000 0.00 0.00 0.00 4.01
3547 4358 3.751479 ACTGGAATTTTTGGGCAAGAC 57.249 42.857 0.00 0.00 0.00 3.01
3548 4359 3.037549 ACTGGAATTTTTGGGCAAGACA 58.962 40.909 0.00 0.00 0.00 3.41
3607 4422 7.675478 AGCAAAACATTTTTCGTTTTCTCTTC 58.325 30.769 0.00 0.00 43.00 2.87
3621 4436 6.073003 CGTTTTCTCTTCTATTTCTGCCTTGT 60.073 38.462 0.00 0.00 0.00 3.16
3630 4445 1.825090 TTCTGCCTTGTATGCCTGTG 58.175 50.000 0.00 0.00 0.00 3.66
3631 4446 0.677731 TCTGCCTTGTATGCCTGTGC 60.678 55.000 0.00 0.00 38.26 4.57
3633 4448 1.745115 GCCTTGTATGCCTGTGCGA 60.745 57.895 0.00 0.00 41.78 5.10
3634 4449 1.305219 GCCTTGTATGCCTGTGCGAA 61.305 55.000 0.00 0.00 41.78 4.70
3635 4450 0.447801 CCTTGTATGCCTGTGCGAAC 59.552 55.000 0.00 0.00 41.78 3.95
3636 4451 1.155889 CTTGTATGCCTGTGCGAACA 58.844 50.000 0.00 0.00 41.78 3.18
3638 4453 1.819928 TGTATGCCTGTGCGAACATT 58.180 45.000 0.00 0.00 41.78 2.71
3653 4473 3.851403 CGAACATTATTCCCGTTTGCTTG 59.149 43.478 0.00 0.00 0.00 4.01
3658 4478 0.112412 ATTCCCGTTTGCTTGGGTCT 59.888 50.000 0.00 0.00 46.13 3.85
3661 4481 0.879090 CCCGTTTGCTTGGGTCTTAC 59.121 55.000 0.00 0.00 40.76 2.34
3665 4485 2.156310 CGTTTGCTTGGGTCTTACGTAC 59.844 50.000 0.00 0.00 0.00 3.67
3667 4487 4.559153 GTTTGCTTGGGTCTTACGTACTA 58.441 43.478 0.00 0.00 0.00 1.82
3669 4489 4.870123 TGCTTGGGTCTTACGTACTAAA 57.130 40.909 0.00 0.00 0.00 1.85
3670 4490 5.212532 TGCTTGGGTCTTACGTACTAAAA 57.787 39.130 0.00 0.00 0.00 1.52
3704 4524 6.182627 TGATCTCAGGTTGCTCAACATTTAT 58.817 36.000 13.89 1.51 42.85 1.40
3788 4608 1.338200 GGGGTCTATAGAATGCTGCGG 60.338 57.143 3.40 0.00 0.00 5.69
3836 4656 7.269477 GCTGAAGCATACCTTTCTTGATATT 57.731 36.000 0.00 0.00 41.59 1.28
3839 4659 9.512435 CTGAAGCATACCTTTCTTGATATTTTG 57.488 33.333 0.00 0.00 32.78 2.44
3876 4696 3.064134 GCCAGTCTCGATAAAAAGAAGGC 59.936 47.826 0.00 0.00 37.62 4.35
3913 4733 3.946242 GGGGGATGCAAATAGGGTT 57.054 52.632 0.00 0.00 0.00 4.11
3941 4761 1.470098 GTGTCAGCTGGTGGCAATTAG 59.530 52.381 16.40 0.00 44.30 1.73
3959 4779 8.202137 GGCAATTAGTAGTAGAATCACTTACCA 58.798 37.037 0.00 0.00 0.00 3.25
3970 4790 7.618019 AGAATCACTTACCATATCTAGGCAA 57.382 36.000 0.00 0.00 0.00 4.52
3983 4821 2.642807 TCTAGGCAAGGTTAAGCTGGTT 59.357 45.455 8.16 1.00 0.00 3.67
3990 4828 1.144913 AGGTTAAGCTGGTTGGCTCAA 59.855 47.619 6.33 0.00 42.24 3.02
3993 4831 1.838112 TAAGCTGGTTGGCTCAATGG 58.162 50.000 1.72 0.00 42.24 3.16
3997 4835 0.890683 CTGGTTGGCTCAATGGGTTC 59.109 55.000 0.00 0.00 0.00 3.62
4009 4847 2.467566 ATGGGTTCTTCACACCGTAC 57.532 50.000 0.00 0.00 34.79 3.67
4030 4868 1.247567 GTATGCTTGTGGTGTGGCTT 58.752 50.000 0.00 0.00 0.00 4.35
4059 4897 0.933796 GAAGATAGCCTGTTCTGCGC 59.066 55.000 0.00 0.00 0.00 6.09
4088 4926 2.632987 ACGCTGGAGTTACCTTTTGT 57.367 45.000 0.00 0.00 39.86 2.83
4091 4929 2.875933 CGCTGGAGTTACCTTTTGTTGA 59.124 45.455 0.00 0.00 39.86 3.18
4095 4933 5.390567 GCTGGAGTTACCTTTTGTTGATACG 60.391 44.000 0.00 0.00 39.86 3.06
4096 4934 4.998672 TGGAGTTACCTTTTGTTGATACGG 59.001 41.667 0.00 0.00 39.86 4.02
4119 4957 4.647654 GCGAAGTCGGTGAACTGA 57.352 55.556 2.47 0.00 40.23 3.41
4131 4969 5.574055 GTCGGTGAACTGAATCGTGTTTATA 59.426 40.000 0.00 0.00 32.23 0.98
4137 4975 8.540492 GTGAACTGAATCGTGTTTATATCGAAT 58.460 33.333 0.00 0.00 37.16 3.34
4138 4976 8.752254 TGAACTGAATCGTGTTTATATCGAATC 58.248 33.333 0.00 0.00 37.16 2.52
4139 4977 8.873215 AACTGAATCGTGTTTATATCGAATCT 57.127 30.769 0.00 0.00 35.45 2.40
4140 4978 8.873215 ACTGAATCGTGTTTATATCGAATCTT 57.127 30.769 0.00 0.00 35.45 2.40
4141 4979 9.314321 ACTGAATCGTGTTTATATCGAATCTTT 57.686 29.630 0.00 0.00 35.45 2.52
4184 5022 6.151985 TGTTCTTCTTTGGTTGTAGCAGAAAA 59.848 34.615 0.00 0.00 0.00 2.29
4185 5023 6.377327 TCTTCTTTGGTTGTAGCAGAAAAG 57.623 37.500 0.00 0.00 0.00 2.27
4186 5024 5.885912 TCTTCTTTGGTTGTAGCAGAAAAGT 59.114 36.000 0.00 0.00 0.00 2.66
4187 5025 5.751243 TCTTTGGTTGTAGCAGAAAAGTC 57.249 39.130 0.00 0.00 0.00 3.01
4188 5026 5.437060 TCTTTGGTTGTAGCAGAAAAGTCT 58.563 37.500 0.00 0.00 32.85 3.24
4189 5027 5.527582 TCTTTGGTTGTAGCAGAAAAGTCTC 59.472 40.000 0.00 0.00 28.78 3.36
4190 5028 4.415881 TGGTTGTAGCAGAAAAGTCTCA 57.584 40.909 0.00 0.00 28.78 3.27
4191 5029 4.776349 TGGTTGTAGCAGAAAAGTCTCAA 58.224 39.130 0.00 0.00 28.78 3.02
4192 5030 4.816385 TGGTTGTAGCAGAAAAGTCTCAAG 59.184 41.667 0.00 0.00 28.78 3.02
4193 5031 4.214332 GGTTGTAGCAGAAAAGTCTCAAGG 59.786 45.833 0.00 0.00 28.78 3.61
4194 5032 4.689612 TGTAGCAGAAAAGTCTCAAGGT 57.310 40.909 0.00 0.00 28.78 3.50
4195 5033 5.036117 TGTAGCAGAAAAGTCTCAAGGTT 57.964 39.130 0.00 0.00 28.78 3.50
4196 5034 6.169557 TGTAGCAGAAAAGTCTCAAGGTTA 57.830 37.500 0.00 0.00 28.78 2.85
4197 5035 6.588204 TGTAGCAGAAAAGTCTCAAGGTTAA 58.412 36.000 0.00 0.00 28.78 2.01
4198 5036 6.706270 TGTAGCAGAAAAGTCTCAAGGTTAAG 59.294 38.462 0.00 0.00 28.78 1.85
4199 5037 5.685728 AGCAGAAAAGTCTCAAGGTTAAGT 58.314 37.500 0.00 0.00 28.78 2.24
4200 5038 5.529060 AGCAGAAAAGTCTCAAGGTTAAGTG 59.471 40.000 0.00 0.00 28.78 3.16
4201 5039 5.752712 CAGAAAAGTCTCAAGGTTAAGTGC 58.247 41.667 0.00 0.00 28.78 4.40
4202 5040 4.511826 AGAAAAGTCTCAAGGTTAAGTGCG 59.488 41.667 0.00 0.00 0.00 5.34
4203 5041 3.746045 AAGTCTCAAGGTTAAGTGCGA 57.254 42.857 0.00 0.00 0.00 5.10
4204 5042 3.746045 AGTCTCAAGGTTAAGTGCGAA 57.254 42.857 0.00 0.00 0.00 4.70
4205 5043 3.391049 AGTCTCAAGGTTAAGTGCGAAC 58.609 45.455 0.00 0.00 0.00 3.95
4206 5044 3.128349 GTCTCAAGGTTAAGTGCGAACA 58.872 45.455 0.00 0.00 0.00 3.18
4207 5045 3.184581 GTCTCAAGGTTAAGTGCGAACAG 59.815 47.826 0.00 0.00 0.00 3.16
4208 5046 3.131396 CTCAAGGTTAAGTGCGAACAGT 58.869 45.455 0.00 0.00 0.00 3.55
4209 5047 3.537580 TCAAGGTTAAGTGCGAACAGTT 58.462 40.909 0.00 0.00 42.22 3.16
4210 5048 3.311322 TCAAGGTTAAGTGCGAACAGTTG 59.689 43.478 0.00 0.00 39.79 3.16
4211 5049 3.188159 AGGTTAAGTGCGAACAGTTGA 57.812 42.857 0.00 0.00 39.79 3.18
4212 5050 2.870411 AGGTTAAGTGCGAACAGTTGAC 59.130 45.455 0.00 0.00 42.24 3.18
4213 5051 2.610374 GGTTAAGTGCGAACAGTTGACA 59.390 45.455 0.00 0.00 43.84 3.58
4214 5052 3.303132 GGTTAAGTGCGAACAGTTGACAG 60.303 47.826 0.00 0.00 43.84 3.51
4215 5053 2.024176 AAGTGCGAACAGTTGACAGT 57.976 45.000 0.00 0.00 38.05 3.55
4216 5054 1.290203 AGTGCGAACAGTTGACAGTG 58.710 50.000 0.00 0.00 0.00 3.66
4217 5055 1.134818 AGTGCGAACAGTTGACAGTGA 60.135 47.619 0.00 0.00 0.00 3.41
4218 5056 1.663643 GTGCGAACAGTTGACAGTGAA 59.336 47.619 0.00 0.00 0.00 3.18
4219 5057 1.933181 TGCGAACAGTTGACAGTGAAG 59.067 47.619 0.00 0.00 0.00 3.02
4220 5058 1.933853 GCGAACAGTTGACAGTGAAGT 59.066 47.619 0.00 0.00 0.00 3.01
4221 5059 2.285834 GCGAACAGTTGACAGTGAAGTG 60.286 50.000 6.07 6.07 0.00 3.16
4222 5060 3.186909 CGAACAGTTGACAGTGAAGTGA 58.813 45.455 13.91 0.00 0.00 3.41
4223 5061 3.804325 CGAACAGTTGACAGTGAAGTGAT 59.196 43.478 13.91 2.40 0.00 3.06
4224 5062 4.318333 CGAACAGTTGACAGTGAAGTGATG 60.318 45.833 13.91 0.53 0.00 3.07
4225 5063 3.470709 ACAGTTGACAGTGAAGTGATGG 58.529 45.455 13.91 0.00 0.00 3.51
4226 5064 2.810274 CAGTTGACAGTGAAGTGATGGG 59.190 50.000 1.47 0.00 0.00 4.00
4227 5065 2.439507 AGTTGACAGTGAAGTGATGGGT 59.560 45.455 0.00 0.00 0.00 4.51
4228 5066 3.117888 AGTTGACAGTGAAGTGATGGGTT 60.118 43.478 0.00 0.00 0.00 4.11
4229 5067 4.102524 AGTTGACAGTGAAGTGATGGGTTA 59.897 41.667 0.00 0.00 0.00 2.85
4230 5068 4.698201 TGACAGTGAAGTGATGGGTTAA 57.302 40.909 0.00 0.00 0.00 2.01
4231 5069 4.641396 TGACAGTGAAGTGATGGGTTAAG 58.359 43.478 0.00 0.00 0.00 1.85
4232 5070 4.346709 TGACAGTGAAGTGATGGGTTAAGA 59.653 41.667 0.00 0.00 0.00 2.10
4233 5071 5.013079 TGACAGTGAAGTGATGGGTTAAGAT 59.987 40.000 0.00 0.00 0.00 2.40
4234 5072 5.248640 ACAGTGAAGTGATGGGTTAAGATG 58.751 41.667 0.00 0.00 0.00 2.90
4235 5073 4.637534 CAGTGAAGTGATGGGTTAAGATGG 59.362 45.833 0.00 0.00 0.00 3.51
4236 5074 3.947834 GTGAAGTGATGGGTTAAGATGGG 59.052 47.826 0.00 0.00 0.00 4.00
4237 5075 3.591527 TGAAGTGATGGGTTAAGATGGGT 59.408 43.478 0.00 0.00 0.00 4.51
4238 5076 3.933861 AGTGATGGGTTAAGATGGGTC 57.066 47.619 0.00 0.00 0.00 4.46
4239 5077 3.464828 AGTGATGGGTTAAGATGGGTCT 58.535 45.455 0.00 0.00 35.82 3.85
4240 5078 3.852578 AGTGATGGGTTAAGATGGGTCTT 59.147 43.478 0.00 0.00 46.22 3.01
4241 5079 4.292306 AGTGATGGGTTAAGATGGGTCTTT 59.708 41.667 0.00 0.00 41.92 2.52
4242 5080 4.399303 GTGATGGGTTAAGATGGGTCTTTG 59.601 45.833 0.00 0.00 41.92 2.77
4243 5081 3.449746 TGGGTTAAGATGGGTCTTTGG 57.550 47.619 0.00 0.00 41.92 3.28
4244 5082 2.100197 GGGTTAAGATGGGTCTTTGGC 58.900 52.381 0.00 0.00 41.92 4.52
4245 5083 2.291605 GGGTTAAGATGGGTCTTTGGCT 60.292 50.000 0.00 0.00 41.92 4.75
4246 5084 2.755103 GGTTAAGATGGGTCTTTGGCTG 59.245 50.000 0.00 0.00 41.92 4.85
4247 5085 3.421844 GTTAAGATGGGTCTTTGGCTGT 58.578 45.455 0.00 0.00 41.92 4.40
4248 5086 4.566907 GGTTAAGATGGGTCTTTGGCTGTA 60.567 45.833 0.00 0.00 41.92 2.74
4249 5087 3.356529 AAGATGGGTCTTTGGCTGTAG 57.643 47.619 0.00 0.00 41.92 2.74
4250 5088 1.065126 AGATGGGTCTTTGGCTGTAGC 60.065 52.381 0.00 0.00 41.14 3.58
4251 5089 0.698238 ATGGGTCTTTGGCTGTAGCA 59.302 50.000 6.18 0.00 44.36 3.49
4252 5090 0.036732 TGGGTCTTTGGCTGTAGCAG 59.963 55.000 6.18 0.00 44.36 4.24
4253 5091 0.324943 GGGTCTTTGGCTGTAGCAGA 59.675 55.000 6.18 0.00 44.36 4.26
4254 5092 1.271379 GGGTCTTTGGCTGTAGCAGAA 60.271 52.381 6.18 0.00 44.36 3.02
4255 5093 2.504367 GGTCTTTGGCTGTAGCAGAAA 58.496 47.619 6.18 3.62 44.36 2.52
4256 5094 2.884639 GGTCTTTGGCTGTAGCAGAAAA 59.115 45.455 6.18 2.96 44.36 2.29
4257 5095 3.057946 GGTCTTTGGCTGTAGCAGAAAAG 60.058 47.826 6.18 11.49 44.36 2.27
4258 5096 3.565902 GTCTTTGGCTGTAGCAGAAAAGT 59.434 43.478 17.65 0.00 44.36 2.66
4259 5097 3.815401 TCTTTGGCTGTAGCAGAAAAGTC 59.185 43.478 17.65 0.00 44.36 3.01
4260 5098 3.492102 TTGGCTGTAGCAGAAAAGTCT 57.508 42.857 6.18 0.00 44.36 3.24
4295 5147 4.705023 GCAAAAAGAGTTAAGATGGGCCTA 59.295 41.667 4.53 0.00 0.00 3.93
4340 5193 4.656100 TCAAAGGACTTCCCAATCATCA 57.344 40.909 0.00 0.00 37.41 3.07
4341 5194 5.197224 TCAAAGGACTTCCCAATCATCAT 57.803 39.130 0.00 0.00 37.41 2.45
4342 5195 5.195940 TCAAAGGACTTCCCAATCATCATC 58.804 41.667 0.00 0.00 37.41 2.92
4343 5196 3.872459 AGGACTTCCCAATCATCATCC 57.128 47.619 0.00 0.00 37.41 3.51
4344 5197 2.105477 AGGACTTCCCAATCATCATCCG 59.895 50.000 0.00 0.00 37.41 4.18
4401 5256 3.073678 TCCACACTTTTGACATCCATCG 58.926 45.455 0.00 0.00 0.00 3.84
4442 5787 3.564342 GACGCAACGTGCTGCTCAC 62.564 63.158 10.30 0.45 42.25 3.51
4600 5945 2.102357 GATCGCGTCCAGCTTCGA 59.898 61.111 5.77 1.47 45.59 3.71
4647 5992 4.427661 GCTGCTCGCTCGTCCACT 62.428 66.667 0.00 0.00 35.14 4.00
4658 6003 2.920645 CGTCCACTGCTCCGTGTCT 61.921 63.158 0.00 0.00 33.07 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.027625 GTCGAGGTTGCGGTCCAAG 61.028 63.158 0.00 0.00 33.21 3.61
17 18 2.029964 GTCGAGGTTGCGGTCCAA 59.970 61.111 0.00 0.00 0.00 3.53
18 19 3.998672 GGTCGAGGTTGCGGTCCA 61.999 66.667 0.00 0.00 0.00 4.02
24 25 3.112709 GACTGCGGTCGAGGTTGC 61.113 66.667 10.53 0.00 32.47 4.17
25 26 2.022129 GTGACTGCGGTCGAGGTTG 61.022 63.158 20.49 0.00 44.83 3.77
26 27 2.338984 GTGACTGCGGTCGAGGTT 59.661 61.111 20.49 0.00 44.83 3.50
27 28 4.039357 CGTGACTGCGGTCGAGGT 62.039 66.667 20.49 0.00 44.83 3.85
28 29 3.948086 GACGTGACTGCGGTCGAGG 62.948 68.421 20.49 16.07 44.83 4.63
29 30 2.502080 GACGTGACTGCGGTCGAG 60.502 66.667 20.49 17.93 44.83 4.04
30 31 4.034258 GGACGTGACTGCGGTCGA 62.034 66.667 20.49 7.40 44.83 4.20
53 54 0.523966 TATTGTTGGCCGCTTTTCCG 59.476 50.000 0.00 0.00 0.00 4.30
54 55 2.959507 ATATTGTTGGCCGCTTTTCC 57.040 45.000 0.00 0.00 0.00 3.13
55 56 5.587289 TGAATATATTGTTGGCCGCTTTTC 58.413 37.500 1.78 0.00 0.00 2.29
56 57 5.590530 TGAATATATTGTTGGCCGCTTTT 57.409 34.783 1.78 0.00 0.00 2.27
57 58 5.590530 TTGAATATATTGTTGGCCGCTTT 57.409 34.783 1.78 0.00 0.00 3.51
58 59 5.536161 AGATTGAATATATTGTTGGCCGCTT 59.464 36.000 1.78 0.00 0.00 4.68
59 60 5.072741 AGATTGAATATATTGTTGGCCGCT 58.927 37.500 1.78 0.00 0.00 5.52
60 61 5.376854 AGATTGAATATATTGTTGGCCGC 57.623 39.130 1.78 0.00 0.00 6.53
61 62 5.473162 TGGAGATTGAATATATTGTTGGCCG 59.527 40.000 1.78 0.00 0.00 6.13
62 63 6.899393 TGGAGATTGAATATATTGTTGGCC 57.101 37.500 1.78 0.00 0.00 5.36
63 64 8.025445 GTCATGGAGATTGAATATATTGTTGGC 58.975 37.037 1.78 0.00 0.00 4.52
64 65 9.293404 AGTCATGGAGATTGAATATATTGTTGG 57.707 33.333 1.78 0.00 0.00 3.77
74 75 9.584008 AGCATAATTTAGTCATGGAGATTGAAT 57.416 29.630 0.00 0.00 0.00 2.57
75 76 8.985315 AGCATAATTTAGTCATGGAGATTGAA 57.015 30.769 0.00 0.00 0.00 2.69
76 77 8.435187 AGAGCATAATTTAGTCATGGAGATTGA 58.565 33.333 0.00 0.00 0.00 2.57
77 78 8.618702 AGAGCATAATTTAGTCATGGAGATTG 57.381 34.615 0.00 0.00 0.00 2.67
78 79 9.941325 CTAGAGCATAATTTAGTCATGGAGATT 57.059 33.333 0.00 0.00 0.00 2.40
79 80 8.538701 CCTAGAGCATAATTTAGTCATGGAGAT 58.461 37.037 0.00 0.00 0.00 2.75
80 81 7.038729 CCCTAGAGCATAATTTAGTCATGGAGA 60.039 40.741 0.00 0.00 0.00 3.71
81 82 7.102346 CCCTAGAGCATAATTTAGTCATGGAG 58.898 42.308 0.00 0.00 0.00 3.86
82 83 6.558775 ACCCTAGAGCATAATTTAGTCATGGA 59.441 38.462 0.00 0.00 0.00 3.41
83 84 6.773638 ACCCTAGAGCATAATTTAGTCATGG 58.226 40.000 0.00 0.00 0.00 3.66
84 85 8.682936 AAACCCTAGAGCATAATTTAGTCATG 57.317 34.615 0.00 0.00 0.00 3.07
86 87 9.209048 TCTAAACCCTAGAGCATAATTTAGTCA 57.791 33.333 0.00 0.00 32.51 3.41
95 96 9.998106 GATGTAAATTCTAAACCCTAGAGCATA 57.002 33.333 0.00 0.00 0.00 3.14
96 97 8.718656 AGATGTAAATTCTAAACCCTAGAGCAT 58.281 33.333 0.00 0.00 0.00 3.79
97 98 8.090788 AGATGTAAATTCTAAACCCTAGAGCA 57.909 34.615 0.00 0.00 0.00 4.26
98 99 8.966069 AAGATGTAAATTCTAAACCCTAGAGC 57.034 34.615 0.00 0.00 0.00 4.09
142 143 9.674068 TGGCAATAAACATAAGATGTACAACTA 57.326 29.630 6.02 0.00 44.07 2.24
143 144 8.458843 GTGGCAATAAACATAAGATGTACAACT 58.541 33.333 0.00 0.00 44.07 3.16
144 145 8.458843 AGTGGCAATAAACATAAGATGTACAAC 58.541 33.333 0.00 0.00 44.07 3.32
145 146 8.574251 AGTGGCAATAAACATAAGATGTACAA 57.426 30.769 0.00 0.00 44.07 2.41
146 147 9.674068 TTAGTGGCAATAAACATAAGATGTACA 57.326 29.630 4.72 0.00 44.07 2.90
168 169 9.214957 TCAATACACGATGAACATTTTCTTAGT 57.785 29.630 0.00 0.00 32.36 2.24
175 176 9.474920 ACATTTTTCAATACACGATGAACATTT 57.525 25.926 0.00 0.00 35.42 2.32
274 276 8.748412 GCATGCCCATTATAGATTTTTGGTATA 58.252 33.333 6.36 0.00 0.00 1.47
396 400 8.522178 TTTTTCAGTACACGTTCAACATTTTT 57.478 26.923 0.00 0.00 0.00 1.94
449 453 8.140628 TCTTGGATTTTTGTTGATTTTCATCGA 58.859 29.630 0.00 0.00 31.08 3.59
520 541 9.868389 GTTTCCTTTATTCTTTCTTTGCATTTG 57.132 29.630 0.00 0.00 0.00 2.32
535 556 9.952030 TCTTTGTTTTTCCTTGTTTCCTTTATT 57.048 25.926 0.00 0.00 0.00 1.40
537 558 9.780186 TTTCTTTGTTTTTCCTTGTTTCCTTTA 57.220 25.926 0.00 0.00 0.00 1.85
538 559 8.684386 TTTCTTTGTTTTTCCTTGTTTCCTTT 57.316 26.923 0.00 0.00 0.00 3.11
541 562 7.866729 TGTTTTCTTTGTTTTTCCTTGTTTCC 58.133 30.769 0.00 0.00 0.00 3.13
542 563 8.769891 TCTGTTTTCTTTGTTTTTCCTTGTTTC 58.230 29.630 0.00 0.00 0.00 2.78
555 598 8.519799 TTCTAGGTTTCATCTGTTTTCTTTGT 57.480 30.769 0.00 0.00 0.00 2.83
565 608 7.421530 TTCTTCGTTTTCTAGGTTTCATCTG 57.578 36.000 0.00 0.00 0.00 2.90
566 609 7.878127 TCATTCTTCGTTTTCTAGGTTTCATCT 59.122 33.333 0.00 0.00 0.00 2.90
580 623 9.508567 CTTTCTTTCTTTCTTCATTCTTCGTTT 57.491 29.630 0.00 0.00 0.00 3.60
582 625 8.438676 TCTTTCTTTCTTTCTTCATTCTTCGT 57.561 30.769 0.00 0.00 0.00 3.85
583 626 9.722056 TTTCTTTCTTTCTTTCTTCATTCTTCG 57.278 29.630 0.00 0.00 0.00 3.79
625 683 1.760613 TGTCTGTGGTTCTTTCTCGGT 59.239 47.619 0.00 0.00 0.00 4.69
640 698 6.147864 TCACTGGATTTTCCTTTTTGTCTG 57.852 37.500 0.00 0.00 37.46 3.51
658 717 7.553881 TCTTCCTTTTTAACTGTCTTCACTG 57.446 36.000 0.00 0.00 0.00 3.66
665 724 5.975344 CCGGTTTTCTTCCTTTTTAACTGTC 59.025 40.000 0.00 0.00 0.00 3.51
718 783 2.427453 AGTTCACTCGTGTCACTGTTCT 59.573 45.455 0.65 0.00 0.00 3.01
721 786 1.749063 TCAGTTCACTCGTGTCACTGT 59.251 47.619 20.86 0.00 40.52 3.55
734 799 1.215014 CGCACTGTTCGCTCAGTTCA 61.215 55.000 9.04 0.00 44.92 3.18
740 805 1.803519 CCTCTCGCACTGTTCGCTC 60.804 63.158 0.00 0.00 0.00 5.03
741 806 2.259818 CCTCTCGCACTGTTCGCT 59.740 61.111 0.00 0.00 0.00 4.93
742 807 3.482783 GCCTCTCGCACTGTTCGC 61.483 66.667 0.00 0.00 37.47 4.70
743 808 2.049156 TGCCTCTCGCACTGTTCG 60.049 61.111 0.00 0.00 44.64 3.95
759 824 2.474816 GGTCCTTTAGCGCAGATAGTG 58.525 52.381 11.47 0.00 0.00 2.74
760 825 1.067212 CGGTCCTTTAGCGCAGATAGT 59.933 52.381 11.47 0.00 42.92 2.12
761 826 1.772182 CGGTCCTTTAGCGCAGATAG 58.228 55.000 11.47 1.14 42.92 2.08
762 827 3.959478 CGGTCCTTTAGCGCAGATA 57.041 52.632 11.47 0.00 42.92 1.98
763 828 4.835927 CGGTCCTTTAGCGCAGAT 57.164 55.556 11.47 0.00 42.92 2.90
771 836 2.026636 GCATATATGGGCCGGTCCTTTA 60.027 50.000 28.64 18.33 34.39 1.85
790 855 4.329545 GGGTGCGAACAGGGAGCA 62.330 66.667 0.00 0.00 38.71 4.26
793 858 1.841556 AGAAGGGTGCGAACAGGGA 60.842 57.895 0.00 0.00 0.00 4.20
795 860 1.672356 CCAGAAGGGTGCGAACAGG 60.672 63.158 0.00 0.00 0.00 4.00
796 861 2.328099 GCCAGAAGGGTGCGAACAG 61.328 63.158 0.00 0.00 39.65 3.16
798 863 3.056328 GGCCAGAAGGGTGCGAAC 61.056 66.667 0.00 0.00 39.65 3.95
823 904 0.530870 TTTTTCTTTTTGCCGGCCGG 60.531 50.000 40.26 40.26 38.57 6.13
824 905 0.858583 CTTTTTCTTTTTGCCGGCCG 59.141 50.000 26.77 21.04 0.00 6.13
864 949 4.888325 AGGGCGAGGAGGGGATGG 62.888 72.222 0.00 0.00 0.00 3.51
876 961 2.193248 GGGAATGGAAGGAGGGCG 59.807 66.667 0.00 0.00 0.00 6.13
912 997 4.448976 GAGGGGAGGGCAAAGGGC 62.449 72.222 0.00 0.00 43.74 5.19
913 998 4.115199 CGAGGGGAGGGCAAAGGG 62.115 72.222 0.00 0.00 0.00 3.95
914 999 4.803908 GCGAGGGGAGGGCAAAGG 62.804 72.222 0.00 0.00 0.00 3.11
915 1000 4.803908 GGCGAGGGGAGGGCAAAG 62.804 72.222 0.00 0.00 0.00 2.77
922 1007 4.465446 TGGAGGAGGCGAGGGGAG 62.465 72.222 0.00 0.00 0.00 4.30
923 1008 4.779733 GTGGAGGAGGCGAGGGGA 62.780 72.222 0.00 0.00 0.00 4.81
945 1030 1.521423 CGCTCGTGTCGGATTAATTCC 59.479 52.381 0.00 0.00 41.59 3.01
949 1034 1.621107 GTTCGCTCGTGTCGGATTAA 58.379 50.000 2.50 0.00 0.00 1.40
953 1038 4.047059 GGGTTCGCTCGTGTCGGA 62.047 66.667 2.50 0.00 0.00 4.55
969 1054 2.027625 GACGGCGAGGTGTTTGAGG 61.028 63.158 16.62 0.00 0.00 3.86
970 1055 0.878523 TTGACGGCGAGGTGTTTGAG 60.879 55.000 16.62 0.00 0.00 3.02
971 1056 0.462225 TTTGACGGCGAGGTGTTTGA 60.462 50.000 16.62 0.00 0.00 2.69
972 1057 0.316689 GTTTGACGGCGAGGTGTTTG 60.317 55.000 16.62 0.00 0.00 2.93
973 1058 1.441732 GGTTTGACGGCGAGGTGTTT 61.442 55.000 16.62 0.00 0.00 2.83
974 1059 1.890510 GGTTTGACGGCGAGGTGTT 60.891 57.895 16.62 0.00 0.00 3.32
975 1060 2.280592 GGTTTGACGGCGAGGTGT 60.281 61.111 16.62 0.00 0.00 4.16
976 1061 3.047877 GGGTTTGACGGCGAGGTG 61.048 66.667 16.62 0.00 0.00 4.00
977 1062 3.236003 GAGGGTTTGACGGCGAGGT 62.236 63.158 16.62 0.00 0.00 3.85
1132 1217 2.375766 CGACGCAGGACAGCTTCAC 61.376 63.158 0.00 0.00 32.85 3.18
1133 1218 2.049156 CGACGCAGGACAGCTTCA 60.049 61.111 0.00 0.00 32.85 3.02
1159 1244 3.798511 GTGGGGGTAGCTCCAGGC 61.799 72.222 15.48 0.00 42.19 4.85
1299 1384 1.871772 GTGCCATATCGCATCCAGC 59.128 57.895 0.00 0.00 41.70 4.85
1408 1493 0.757188 ATACCTGAGAGGGTGCCGAG 60.757 60.000 0.00 0.00 40.58 4.63
1432 1517 3.380393 TCGATCCTACATTTTCCTCCCA 58.620 45.455 0.00 0.00 0.00 4.37
1435 1520 6.284459 ACATTCTCGATCCTACATTTTCCTC 58.716 40.000 0.00 0.00 0.00 3.71
1467 1655 5.946298 ACACTGTGATAACATTCATTGCTG 58.054 37.500 15.86 0.00 0.00 4.41
1517 1717 1.162698 CTGAATGCAGGAGTGTGGTG 58.837 55.000 0.00 0.00 38.51 4.17
1603 1803 7.725397 AGCAACTCATAGGCCATATTATTTCAA 59.275 33.333 5.01 0.00 0.00 2.69
1700 1900 4.889807 CACGAAAAGGGTGGGTGA 57.110 55.556 0.00 0.00 0.00 4.02
1705 1905 1.953686 ACAATGTCCACGAAAAGGGTG 59.046 47.619 0.00 0.00 35.18 4.61
1753 1953 1.801771 TGCAACTGTCCGGATAAAACG 59.198 47.619 7.81 0.00 0.00 3.60
1891 2091 8.233190 GCATTTTATCCATTGCTAGCTAGTTAG 58.767 37.037 21.62 9.14 32.41 2.34
1892 2092 7.719193 TGCATTTTATCCATTGCTAGCTAGTTA 59.281 33.333 21.62 10.57 36.10 2.24
1893 2093 6.547141 TGCATTTTATCCATTGCTAGCTAGTT 59.453 34.615 21.62 5.02 36.10 2.24
1894 2094 6.064060 TGCATTTTATCCATTGCTAGCTAGT 58.936 36.000 21.62 2.93 36.10 2.57
1895 2095 6.564709 TGCATTTTATCCATTGCTAGCTAG 57.435 37.500 16.84 16.84 36.10 3.42
1992 2308 4.142381 GGACTGCAGTGAAAAGAAACAAGT 60.142 41.667 27.27 0.00 0.00 3.16
2073 2394 6.939730 TCTGAAGTGTGTCAAGCCATATTTTA 59.060 34.615 0.00 0.00 0.00 1.52
2074 2395 5.769662 TCTGAAGTGTGTCAAGCCATATTTT 59.230 36.000 0.00 0.00 0.00 1.82
2075 2396 5.316167 TCTGAAGTGTGTCAAGCCATATTT 58.684 37.500 0.00 0.00 0.00 1.40
2387 2783 4.282950 AGACGATAAAATGTGCATGCAG 57.717 40.909 23.41 8.52 0.00 4.41
2478 2876 9.356433 TGTTTTCAAACGTATATGTATCTTCGA 57.644 29.630 0.00 0.00 41.74 3.71
2558 2958 3.080300 TCATATTTCGCTTTGGGTGGT 57.920 42.857 0.00 0.00 0.00 4.16
2590 2990 0.173708 GACTCGCGAAGGTCCTCATT 59.826 55.000 11.33 0.00 0.00 2.57
2655 3059 3.374367 CGTCTCAGATCAGACCTTCGTAA 59.626 47.826 7.43 0.00 39.90 3.18
2656 3060 2.937149 CGTCTCAGATCAGACCTTCGTA 59.063 50.000 7.43 0.00 39.90 3.43
2657 3061 1.740585 CGTCTCAGATCAGACCTTCGT 59.259 52.381 7.43 0.00 39.90 3.85
2658 3062 1.064803 CCGTCTCAGATCAGACCTTCG 59.935 57.143 7.43 0.00 39.90 3.79
2659 3063 2.096248 ACCGTCTCAGATCAGACCTTC 58.904 52.381 7.43 0.00 39.90 3.46
2660 3064 2.223803 ACCGTCTCAGATCAGACCTT 57.776 50.000 7.43 0.00 39.90 3.50
2661 3065 2.645802 GTACCGTCTCAGATCAGACCT 58.354 52.381 7.43 0.00 39.90 3.85
2662 3066 1.677052 GGTACCGTCTCAGATCAGACC 59.323 57.143 0.00 0.00 39.90 3.85
2663 3067 1.677052 GGGTACCGTCTCAGATCAGAC 59.323 57.143 5.65 3.61 40.86 3.51
2664 3068 2.054232 GGGTACCGTCTCAGATCAGA 57.946 55.000 5.65 0.00 40.86 3.27
2747 3153 1.613630 ACGCCTCCTCCATCCAAGT 60.614 57.895 0.00 0.00 0.00 3.16
2755 3161 1.833787 TTAACACCCACGCCTCCTCC 61.834 60.000 0.00 0.00 0.00 4.30
2838 3244 2.418368 AGAAGCAACAACTGGTGTGA 57.582 45.000 0.00 0.00 40.60 3.58
2854 3260 6.572519 CAAAAGACCAGTTCATTGGAAAGAA 58.427 36.000 0.00 0.00 40.87 2.52
2858 3264 3.960102 AGCAAAAGACCAGTTCATTGGAA 59.040 39.130 0.00 0.00 40.87 3.53
2873 3280 2.232941 ACATGCCTGGATTCAGCAAAAG 59.767 45.455 0.00 0.00 39.61 2.27
2892 3299 8.311836 AGACTAAAACTCGATTTATTCTCCACA 58.688 33.333 5.87 0.00 32.49 4.17
2906 3313 8.979574 AGACATTGTCTAAAAGACTAAAACTCG 58.020 33.333 17.63 0.00 45.27 4.18
2948 3355 3.440127 ACCCCTTCATATTTGTGTTGGG 58.560 45.455 0.00 0.00 34.72 4.12
2976 3383 1.034838 AGACTCGCGAAGGCTCTCAT 61.035 55.000 11.33 0.00 40.37 2.90
2977 3384 1.675972 AGACTCGCGAAGGCTCTCA 60.676 57.895 11.33 0.00 40.37 3.27
2978 3385 1.226547 CAGACTCGCGAAGGCTCTC 60.227 63.158 11.33 0.00 40.37 3.20
2979 3386 2.881389 CAGACTCGCGAAGGCTCT 59.119 61.111 11.33 4.84 40.37 4.09
2980 3387 2.883253 GCAGACTCGCGAAGGCTC 60.883 66.667 11.33 2.34 40.37 4.70
2982 3389 2.883253 GAGCAGACTCGCGAAGGC 60.883 66.667 11.33 11.45 36.85 4.35
2983 3390 1.803519 GTGAGCAGACTCGCGAAGG 60.804 63.158 11.33 1.10 46.69 3.46
2984 3391 3.760673 GTGAGCAGACTCGCGAAG 58.239 61.111 11.33 7.16 46.69 3.79
2989 3396 7.011389 TGGAAATTTATTATGTGAGCAGACTCG 59.989 37.037 0.00 0.00 46.69 4.18
2990 3397 8.213518 TGGAAATTTATTATGTGAGCAGACTC 57.786 34.615 0.00 0.00 43.76 3.36
2991 3398 8.757982 ATGGAAATTTATTATGTGAGCAGACT 57.242 30.769 0.00 0.00 0.00 3.24
2994 3401 9.903682 CCTTATGGAAATTTATTATGTGAGCAG 57.096 33.333 0.00 0.00 34.57 4.24
2995 3402 9.639563 TCCTTATGGAAATTTATTATGTGAGCA 57.360 29.630 0.00 0.00 39.87 4.26
3012 3419 7.734865 AGTACCAGTATCATGATTCCTTATGGA 59.265 37.037 14.65 0.00 41.36 3.41
3013 3420 7.911651 AGTACCAGTATCATGATTCCTTATGG 58.088 38.462 14.65 13.92 0.00 2.74
3014 3421 9.212641 CAAGTACCAGTATCATGATTCCTTATG 57.787 37.037 14.65 3.13 0.00 1.90
3015 3422 8.938883 ACAAGTACCAGTATCATGATTCCTTAT 58.061 33.333 14.65 3.82 0.00 1.73
3016 3423 8.319057 ACAAGTACCAGTATCATGATTCCTTA 57.681 34.615 14.65 0.00 0.00 2.69
3017 3424 7.200434 ACAAGTACCAGTATCATGATTCCTT 57.800 36.000 14.65 4.45 0.00 3.36
3018 3425 6.814954 ACAAGTACCAGTATCATGATTCCT 57.185 37.500 14.65 7.60 0.00 3.36
3019 3426 8.204836 ACTAACAAGTACCAGTATCATGATTCC 58.795 37.037 14.65 5.25 0.00 3.01
3020 3427 9.601217 AACTAACAAGTACCAGTATCATGATTC 57.399 33.333 14.65 9.02 0.00 2.52
3021 3428 9.601217 GAACTAACAAGTACCAGTATCATGATT 57.399 33.333 14.65 0.00 0.00 2.57
3022 3429 8.758829 TGAACTAACAAGTACCAGTATCATGAT 58.241 33.333 13.81 13.81 0.00 2.45
3023 3430 8.129496 TGAACTAACAAGTACCAGTATCATGA 57.871 34.615 0.00 0.00 0.00 3.07
3024 3431 8.820933 CATGAACTAACAAGTACCAGTATCATG 58.179 37.037 0.00 0.00 34.36 3.07
3025 3432 8.540388 ACATGAACTAACAAGTACCAGTATCAT 58.460 33.333 0.00 0.00 0.00 2.45
3026 3433 7.903145 ACATGAACTAACAAGTACCAGTATCA 58.097 34.615 0.00 0.00 0.00 2.15
3027 3434 9.298774 GTACATGAACTAACAAGTACCAGTATC 57.701 37.037 0.00 0.00 38.31 2.24
3028 3435 7.972277 CGTACATGAACTAACAAGTACCAGTAT 59.028 37.037 0.00 0.00 39.91 2.12
3029 3436 7.307694 CGTACATGAACTAACAAGTACCAGTA 58.692 38.462 0.00 0.00 39.91 2.74
3030 3437 6.154445 CGTACATGAACTAACAAGTACCAGT 58.846 40.000 0.00 0.00 39.91 4.00
3031 3438 5.061808 GCGTACATGAACTAACAAGTACCAG 59.938 44.000 0.00 0.00 39.91 4.00
3032 3439 4.925054 GCGTACATGAACTAACAAGTACCA 59.075 41.667 0.00 0.00 39.91 3.25
3033 3440 4.925054 TGCGTACATGAACTAACAAGTACC 59.075 41.667 0.00 0.00 39.91 3.34
3034 3441 6.642683 ATGCGTACATGAACTAACAAGTAC 57.357 37.500 0.00 0.00 39.76 2.73
3035 3442 7.813627 TGTTATGCGTACATGAACTAACAAGTA 59.186 33.333 0.00 0.00 37.04 2.24
3036 3443 6.647481 TGTTATGCGTACATGAACTAACAAGT 59.353 34.615 0.00 0.00 37.04 3.16
3037 3444 7.056002 TGTTATGCGTACATGAACTAACAAG 57.944 36.000 0.00 0.00 37.04 3.16
3038 3445 7.422878 TTGTTATGCGTACATGAACTAACAA 57.577 32.000 0.00 7.92 37.38 2.83
3039 3446 7.422878 TTTGTTATGCGTACATGAACTAACA 57.577 32.000 0.00 2.33 37.04 2.41
3040 3447 8.889849 AATTTGTTATGCGTACATGAACTAAC 57.110 30.769 0.00 0.00 37.04 2.34
3041 3448 9.549509 GAAATTTGTTATGCGTACATGAACTAA 57.450 29.630 0.00 0.00 37.04 2.24
3042 3449 8.722394 TGAAATTTGTTATGCGTACATGAACTA 58.278 29.630 0.00 0.00 37.04 2.24
3043 3450 7.589395 TGAAATTTGTTATGCGTACATGAACT 58.411 30.769 0.00 0.00 37.04 3.01
3044 3451 7.789341 TGAAATTTGTTATGCGTACATGAAC 57.211 32.000 0.00 0.00 37.04 3.18
3045 3452 7.009083 GCATGAAATTTGTTATGCGTACATGAA 59.991 33.333 0.00 0.00 36.89 2.57
3046 3453 6.471841 GCATGAAATTTGTTATGCGTACATGA 59.528 34.615 0.00 0.00 36.89 3.07
3047 3454 6.253083 TGCATGAAATTTGTTATGCGTACATG 59.747 34.615 18.84 12.67 46.61 3.21
3048 3455 6.328714 TGCATGAAATTTGTTATGCGTACAT 58.671 32.000 18.84 2.86 46.61 2.29
3049 3456 5.703876 TGCATGAAATTTGTTATGCGTACA 58.296 33.333 18.84 6.37 46.61 2.90
3050 3457 6.624710 TTGCATGAAATTTGTTATGCGTAC 57.375 33.333 18.84 0.00 46.61 3.67
3051 3458 7.643528 TTTTGCATGAAATTTGTTATGCGTA 57.356 28.000 18.84 11.42 46.61 4.42
3052 3459 6.536731 TTTTGCATGAAATTTGTTATGCGT 57.463 29.167 18.84 0.00 46.61 5.24
3053 3460 7.534578 ACATTTTTGCATGAAATTTGTTATGCG 59.465 29.630 18.84 10.83 46.61 4.73
3054 3461 8.730970 ACATTTTTGCATGAAATTTGTTATGC 57.269 26.923 17.97 17.97 44.56 3.14
3068 3475 9.984190 TGCACATATAATCATACATTTTTGCAT 57.016 25.926 0.00 0.00 0.00 3.96
3069 3476 9.984190 ATGCACATATAATCATACATTTTTGCA 57.016 25.926 0.00 0.00 38.04 4.08
3073 3480 9.830294 CACGATGCACATATAATCATACATTTT 57.170 29.630 0.00 0.00 0.00 1.82
3108 3515 6.983474 AACAAAAATGTTGTGCTTAGCTTT 57.017 29.167 5.60 0.00 32.22 3.51
3109 3516 9.927668 ATATAACAAAAATGTTGTGCTTAGCTT 57.072 25.926 5.60 0.00 33.59 3.74
3201 3620 4.555348 TTCGTGCGTGTTAATTTTTCCT 57.445 36.364 0.00 0.00 0.00 3.36
3202 3621 5.399892 TGAATTCGTGCGTGTTAATTTTTCC 59.600 36.000 0.04 0.00 0.00 3.13
3203 3622 6.075310 TGTGAATTCGTGCGTGTTAATTTTTC 60.075 34.615 0.04 0.00 0.00 2.29
3204 3623 5.744345 TGTGAATTCGTGCGTGTTAATTTTT 59.256 32.000 0.04 0.00 0.00 1.94
3215 3634 4.751172 CTGTACATATGTGAATTCGTGCG 58.249 43.478 18.81 0.00 0.00 5.34
3243 3662 2.679349 GCACTCTTAAGAGGAGGCCTTG 60.679 54.545 30.98 20.49 46.13 3.61
3246 3665 0.905357 TGCACTCTTAAGAGGAGGCC 59.095 55.000 30.98 16.57 46.13 5.19
3251 3670 4.734398 AGATGAGTGCACTCTTAAGAGG 57.266 45.455 38.81 21.77 46.13 3.69
3284 3703 7.942341 TCCAGGTACAGAAACAATAAGAAACAT 59.058 33.333 0.00 0.00 0.00 2.71
3301 3720 3.949754 CGGAAGTACTGTATCCAGGTACA 59.050 47.826 11.71 0.00 43.36 2.90
3322 3741 4.747108 CCTCAATCCAAGCTAAGTGATACG 59.253 45.833 0.00 0.00 0.00 3.06
3323 3742 5.059833 CCCTCAATCCAAGCTAAGTGATAC 58.940 45.833 0.00 0.00 0.00 2.24
3324 3743 4.103153 CCCCTCAATCCAAGCTAAGTGATA 59.897 45.833 0.00 0.00 0.00 2.15
3325 3744 3.117738 CCCCTCAATCCAAGCTAAGTGAT 60.118 47.826 0.00 0.00 0.00 3.06
3326 3745 2.239654 CCCCTCAATCCAAGCTAAGTGA 59.760 50.000 0.00 0.00 0.00 3.41
3327 3746 2.648059 CCCCTCAATCCAAGCTAAGTG 58.352 52.381 0.00 0.00 0.00 3.16
3328 3747 1.566231 CCCCCTCAATCCAAGCTAAGT 59.434 52.381 0.00 0.00 0.00 2.24
3389 4016 5.735922 GCTCTACAAGGTGTTCAAAATGCAA 60.736 40.000 0.00 0.00 0.00 4.08
3416 4043 5.885230 TCATTGGATAGAAACAACAGCTG 57.115 39.130 13.48 13.48 0.00 4.24
3440 4067 3.008330 CTGGACTCAGCAAAAGATCCAG 58.992 50.000 3.83 3.83 45.28 3.86
3443 4070 3.668447 TGTCTGGACTCAGCAAAAGATC 58.332 45.455 2.38 0.00 40.69 2.75
3444 4071 3.777106 TGTCTGGACTCAGCAAAAGAT 57.223 42.857 2.38 0.00 40.69 2.40
3458 4085 2.079158 AGTGATCAAACGCATGTCTGG 58.921 47.619 0.00 0.00 0.00 3.86
3459 4086 2.738314 TCAGTGATCAAACGCATGTCTG 59.262 45.455 0.00 0.00 0.00 3.51
3468 4095 6.959361 ACATTAGTTGTGTCAGTGATCAAAC 58.041 36.000 12.88 9.77 37.11 2.93
3483 4110 8.268850 ACCAAATTCAGTAGCTACATTAGTTG 57.731 34.615 25.28 20.67 0.00 3.16
3514 4325 3.614568 ATTCCAGTAGATCCTACCCGT 57.385 47.619 0.00 0.00 0.00 5.28
3515 4326 4.957684 AAATTCCAGTAGATCCTACCCG 57.042 45.455 0.00 0.00 0.00 5.28
3541 4352 1.294659 CTGAAGGCGGAGTGTCTTGC 61.295 60.000 0.00 0.00 0.00 4.01
3542 4353 1.294659 GCTGAAGGCGGAGTGTCTTG 61.295 60.000 0.00 0.00 0.00 3.02
3543 4354 1.004440 GCTGAAGGCGGAGTGTCTT 60.004 57.895 0.00 0.00 0.00 3.01
3545 4356 0.884704 TTTGCTGAAGGCGGAGTGTC 60.885 55.000 0.00 0.00 45.43 3.67
3547 4358 1.871772 CTTTGCTGAAGGCGGAGTG 59.128 57.895 0.00 0.00 45.43 3.51
3548 4359 4.386413 CTTTGCTGAAGGCGGAGT 57.614 55.556 0.00 0.00 45.43 3.85
3569 4384 8.538409 AAAATGTTTTGCTTTATGTGAGATCC 57.462 30.769 0.00 0.00 0.00 3.36
3607 4422 4.036027 CACAGGCATACAAGGCAGAAATAG 59.964 45.833 0.00 0.00 36.37 1.73
3621 4436 3.563808 GGAATAATGTTCGCACAGGCATA 59.436 43.478 0.00 0.00 41.24 3.14
3630 4445 2.159435 AGCAAACGGGAATAATGTTCGC 60.159 45.455 0.00 0.00 0.00 4.70
3631 4446 3.757745 AGCAAACGGGAATAATGTTCG 57.242 42.857 0.00 0.00 0.00 3.95
3633 4448 3.056179 CCCAAGCAAACGGGAATAATGTT 60.056 43.478 0.00 0.00 46.34 2.71
3634 4449 2.495669 CCCAAGCAAACGGGAATAATGT 59.504 45.455 0.00 0.00 46.34 2.71
3635 4450 2.495669 ACCCAAGCAAACGGGAATAATG 59.504 45.455 0.45 0.00 46.34 1.90
3636 4451 2.758423 GACCCAAGCAAACGGGAATAAT 59.242 45.455 0.45 0.00 46.34 1.28
3638 4453 1.353022 AGACCCAAGCAAACGGGAATA 59.647 47.619 0.45 0.00 46.34 1.75
3669 4489 6.888632 AGCAACCTGAGATCAACAGATATTTT 59.111 34.615 17.53 4.34 37.54 1.82
3670 4490 6.421485 AGCAACCTGAGATCAACAGATATTT 58.579 36.000 17.53 6.11 37.54 1.40
3704 4524 4.830600 TCGTAGGCCATTATGAGATACACA 59.169 41.667 5.01 0.00 0.00 3.72
3788 4608 1.450312 CATCAGGCCACCCTTCGTC 60.450 63.158 5.01 0.00 40.33 4.20
3836 4656 1.480498 GGCTTCTTGTTCCCTCCCAAA 60.480 52.381 0.00 0.00 0.00 3.28
3839 4659 0.322906 CTGGCTTCTTGTTCCCTCCC 60.323 60.000 0.00 0.00 0.00 4.30
3876 4696 1.614317 CCCTTACTGGCCCTTTCTGTG 60.614 57.143 0.00 0.00 0.00 3.66
3913 4733 1.123077 ACCAGCTGACACAAGTGAGA 58.877 50.000 17.39 0.00 29.61 3.27
3959 4779 4.660771 ACCAGCTTAACCTTGCCTAGATAT 59.339 41.667 0.00 0.00 0.00 1.63
3970 4790 0.771127 TGAGCCAACCAGCTTAACCT 59.229 50.000 0.00 0.00 45.15 3.50
3983 4821 1.144708 TGTGAAGAACCCATTGAGCCA 59.855 47.619 0.00 0.00 0.00 4.75
3990 4828 1.002773 GGTACGGTGTGAAGAACCCAT 59.997 52.381 0.00 0.00 33.88 4.00
4009 4847 1.922135 GCCACACCACAAGCATACGG 61.922 60.000 0.00 0.00 0.00 4.02
4030 4868 2.103373 AGGCTATCTTCTTCAGTGCGA 58.897 47.619 0.00 0.00 0.00 5.10
4059 4897 0.036010 ACTCCAGCGTTCCATCCAAG 60.036 55.000 0.00 0.00 0.00 3.61
4088 4926 2.991190 GACTTCGCTGAAACCGTATCAA 59.009 45.455 0.00 0.00 0.00 2.57
4091 4929 1.625616 CGACTTCGCTGAAACCGTAT 58.374 50.000 0.00 0.00 0.00 3.06
4095 4933 0.599204 TCACCGACTTCGCTGAAACC 60.599 55.000 0.00 0.00 38.18 3.27
4096 4934 1.070776 GTTCACCGACTTCGCTGAAAC 60.071 52.381 10.21 3.41 43.01 2.78
4141 4979 4.402155 AGAACACACCATCTTCAGCAAAAA 59.598 37.500 0.00 0.00 0.00 1.94
4142 4980 3.953612 AGAACACACCATCTTCAGCAAAA 59.046 39.130 0.00 0.00 0.00 2.44
4143 4981 3.554934 AGAACACACCATCTTCAGCAAA 58.445 40.909 0.00 0.00 0.00 3.68
4144 4982 3.213206 AGAACACACCATCTTCAGCAA 57.787 42.857 0.00 0.00 0.00 3.91
4145 4983 2.936919 AGAACACACCATCTTCAGCA 57.063 45.000 0.00 0.00 0.00 4.41
4146 4984 3.820777 GAAGAACACACCATCTTCAGC 57.179 47.619 9.90 0.00 46.89 4.26
4155 4993 4.497507 GCTACAACCAAAGAAGAACACACC 60.498 45.833 0.00 0.00 0.00 4.16
4157 4995 4.265893 TGCTACAACCAAAGAAGAACACA 58.734 39.130 0.00 0.00 0.00 3.72
4158 4996 4.574828 TCTGCTACAACCAAAGAAGAACAC 59.425 41.667 0.00 0.00 0.00 3.32
4184 5022 3.181469 TGTTCGCACTTAACCTTGAGACT 60.181 43.478 0.00 0.00 0.00 3.24
4185 5023 3.128349 TGTTCGCACTTAACCTTGAGAC 58.872 45.455 0.00 0.00 0.00 3.36
4186 5024 3.181469 ACTGTTCGCACTTAACCTTGAGA 60.181 43.478 0.00 0.00 0.00 3.27
4187 5025 3.131396 ACTGTTCGCACTTAACCTTGAG 58.869 45.455 0.00 0.00 0.00 3.02
4188 5026 3.188159 ACTGTTCGCACTTAACCTTGA 57.812 42.857 0.00 0.00 0.00 3.02
4189 5027 3.311322 TCAACTGTTCGCACTTAACCTTG 59.689 43.478 0.00 0.00 0.00 3.61
4190 5028 3.311596 GTCAACTGTTCGCACTTAACCTT 59.688 43.478 0.00 0.00 0.00 3.50
4191 5029 2.870411 GTCAACTGTTCGCACTTAACCT 59.130 45.455 0.00 0.00 0.00 3.50
4192 5030 2.610374 TGTCAACTGTTCGCACTTAACC 59.390 45.455 0.00 0.00 0.00 2.85
4193 5031 3.308866 ACTGTCAACTGTTCGCACTTAAC 59.691 43.478 0.00 0.00 0.00 2.01
4194 5032 3.308595 CACTGTCAACTGTTCGCACTTAA 59.691 43.478 0.00 0.00 0.00 1.85
4195 5033 2.863740 CACTGTCAACTGTTCGCACTTA 59.136 45.455 0.00 0.00 0.00 2.24
4196 5034 1.665679 CACTGTCAACTGTTCGCACTT 59.334 47.619 0.00 0.00 0.00 3.16
4197 5035 1.134818 TCACTGTCAACTGTTCGCACT 60.135 47.619 0.00 0.00 0.00 4.40
4198 5036 1.286501 TCACTGTCAACTGTTCGCAC 58.713 50.000 0.00 0.00 0.00 5.34
4199 5037 1.933181 CTTCACTGTCAACTGTTCGCA 59.067 47.619 0.00 0.00 0.00 5.10
4200 5038 1.933853 ACTTCACTGTCAACTGTTCGC 59.066 47.619 0.00 0.00 0.00 4.70
4201 5039 3.186909 TCACTTCACTGTCAACTGTTCG 58.813 45.455 0.00 0.00 0.00 3.95
4202 5040 4.024556 CCATCACTTCACTGTCAACTGTTC 60.025 45.833 0.00 0.00 0.00 3.18
4203 5041 3.879295 CCATCACTTCACTGTCAACTGTT 59.121 43.478 0.00 0.00 0.00 3.16
4204 5042 3.470709 CCATCACTTCACTGTCAACTGT 58.529 45.455 0.00 0.00 0.00 3.55
4205 5043 2.810274 CCCATCACTTCACTGTCAACTG 59.190 50.000 0.00 0.00 0.00 3.16
4206 5044 2.439507 ACCCATCACTTCACTGTCAACT 59.560 45.455 0.00 0.00 0.00 3.16
4207 5045 2.851195 ACCCATCACTTCACTGTCAAC 58.149 47.619 0.00 0.00 0.00 3.18
4208 5046 3.576078 AACCCATCACTTCACTGTCAA 57.424 42.857 0.00 0.00 0.00 3.18
4209 5047 4.346709 TCTTAACCCATCACTTCACTGTCA 59.653 41.667 0.00 0.00 0.00 3.58
4210 5048 4.894784 TCTTAACCCATCACTTCACTGTC 58.105 43.478 0.00 0.00 0.00 3.51
4211 5049 4.974645 TCTTAACCCATCACTTCACTGT 57.025 40.909 0.00 0.00 0.00 3.55
4212 5050 4.637534 CCATCTTAACCCATCACTTCACTG 59.362 45.833 0.00 0.00 0.00 3.66
4213 5051 4.324563 CCCATCTTAACCCATCACTTCACT 60.325 45.833 0.00 0.00 0.00 3.41
4214 5052 3.947834 CCCATCTTAACCCATCACTTCAC 59.052 47.826 0.00 0.00 0.00 3.18
4215 5053 3.591527 ACCCATCTTAACCCATCACTTCA 59.408 43.478 0.00 0.00 0.00 3.02
4216 5054 4.080299 AGACCCATCTTAACCCATCACTTC 60.080 45.833 0.00 0.00 0.00 3.01
4217 5055 3.852578 AGACCCATCTTAACCCATCACTT 59.147 43.478 0.00 0.00 0.00 3.16
4218 5056 3.464828 AGACCCATCTTAACCCATCACT 58.535 45.455 0.00 0.00 0.00 3.41
4219 5057 3.933861 AGACCCATCTTAACCCATCAC 57.066 47.619 0.00 0.00 0.00 3.06
4220 5058 4.569653 CCAAAGACCCATCTTAACCCATCA 60.570 45.833 0.00 0.00 44.82 3.07
4221 5059 3.954258 CCAAAGACCCATCTTAACCCATC 59.046 47.826 0.00 0.00 44.82 3.51
4222 5060 3.881713 GCCAAAGACCCATCTTAACCCAT 60.882 47.826 0.00 0.00 44.82 4.00
4223 5061 2.556559 GCCAAAGACCCATCTTAACCCA 60.557 50.000 0.00 0.00 44.82 4.51
4224 5062 2.100197 GCCAAAGACCCATCTTAACCC 58.900 52.381 0.00 0.00 44.82 4.11
4225 5063 2.755103 CAGCCAAAGACCCATCTTAACC 59.245 50.000 0.00 0.00 44.82 2.85
4226 5064 3.421844 ACAGCCAAAGACCCATCTTAAC 58.578 45.455 0.00 0.00 44.82 2.01
4227 5065 3.806949 ACAGCCAAAGACCCATCTTAA 57.193 42.857 0.00 0.00 44.82 1.85
4228 5066 3.370527 GCTACAGCCAAAGACCCATCTTA 60.371 47.826 0.00 0.00 38.54 2.10
4229 5067 2.619074 GCTACAGCCAAAGACCCATCTT 60.619 50.000 0.00 0.00 40.10 2.40
4230 5068 1.065126 GCTACAGCCAAAGACCCATCT 60.065 52.381 0.00 0.00 33.41 2.90
4231 5069 1.340017 TGCTACAGCCAAAGACCCATC 60.340 52.381 0.00 0.00 41.18 3.51
4232 5070 0.698238 TGCTACAGCCAAAGACCCAT 59.302 50.000 0.00 0.00 41.18 4.00
4233 5071 0.036732 CTGCTACAGCCAAAGACCCA 59.963 55.000 0.00 0.00 41.18 4.51
4234 5072 0.324943 TCTGCTACAGCCAAAGACCC 59.675 55.000 0.00 0.00 41.18 4.46
4235 5073 2.185004 TTCTGCTACAGCCAAAGACC 57.815 50.000 0.00 0.00 41.18 3.85
4236 5074 3.565902 ACTTTTCTGCTACAGCCAAAGAC 59.434 43.478 18.37 0.00 41.18 3.01
4237 5075 3.815401 GACTTTTCTGCTACAGCCAAAGA 59.185 43.478 18.37 5.50 41.18 2.52
4238 5076 3.817647 AGACTTTTCTGCTACAGCCAAAG 59.182 43.478 13.35 13.35 41.18 2.77
4239 5077 3.565482 CAGACTTTTCTGCTACAGCCAAA 59.435 43.478 0.00 0.00 42.99 3.28
4240 5078 3.141398 CAGACTTTTCTGCTACAGCCAA 58.859 45.455 0.00 0.00 42.99 4.52
4241 5079 2.771089 CAGACTTTTCTGCTACAGCCA 58.229 47.619 0.00 0.00 42.99 4.75
4251 5089 5.437060 TGCACTTAACCTTCAGACTTTTCT 58.563 37.500 0.00 0.00 0.00 2.52
4252 5090 5.751243 TGCACTTAACCTTCAGACTTTTC 57.249 39.130 0.00 0.00 0.00 2.29
4253 5091 6.524101 TTTGCACTTAACCTTCAGACTTTT 57.476 33.333 0.00 0.00 0.00 2.27
4254 5092 6.524101 TTTTGCACTTAACCTTCAGACTTT 57.476 33.333 0.00 0.00 0.00 2.66
4255 5093 6.377146 TCTTTTTGCACTTAACCTTCAGACTT 59.623 34.615 0.00 0.00 0.00 3.01
4256 5094 5.885912 TCTTTTTGCACTTAACCTTCAGACT 59.114 36.000 0.00 0.00 0.00 3.24
4257 5095 6.131544 TCTTTTTGCACTTAACCTTCAGAC 57.868 37.500 0.00 0.00 0.00 3.51
4258 5096 5.885912 ACTCTTTTTGCACTTAACCTTCAGA 59.114 36.000 0.00 0.00 0.00 3.27
4259 5097 6.136541 ACTCTTTTTGCACTTAACCTTCAG 57.863 37.500 0.00 0.00 0.00 3.02
4260 5098 6.524101 AACTCTTTTTGCACTTAACCTTCA 57.476 33.333 0.00 0.00 0.00 3.02
4261 5099 8.403236 TCTTAACTCTTTTTGCACTTAACCTTC 58.597 33.333 0.00 0.00 0.00 3.46
4262 5100 8.288689 TCTTAACTCTTTTTGCACTTAACCTT 57.711 30.769 0.00 0.00 0.00 3.50
4263 5101 7.875327 TCTTAACTCTTTTTGCACTTAACCT 57.125 32.000 0.00 0.00 0.00 3.50
4295 5147 7.615365 TGATAATCCTGGCACATTTTCTAGTTT 59.385 33.333 0.00 0.00 38.20 2.66
4340 5193 2.052782 AAATAAAAGAGCGCCCGGAT 57.947 45.000 0.73 0.00 0.00 4.18
4341 5194 2.695127 TAAATAAAAGAGCGCCCGGA 57.305 45.000 0.73 0.00 0.00 5.14
4342 5195 3.982576 AATAAATAAAAGAGCGCCCGG 57.017 42.857 2.29 0.00 0.00 5.73
4343 5196 9.620660 AATAATAAATAAATAAAAGAGCGCCCG 57.379 29.630 2.29 0.00 0.00 6.13
4375 5230 3.882888 GGATGTCAAAAGTGTGGACTTGA 59.117 43.478 0.00 0.00 41.87 3.02
4401 5256 1.469126 CGGCGTCGTGTATGCAGTAC 61.469 60.000 0.00 0.00 42.33 2.73
4435 5316 3.857854 GCATCGCCGTGTGAGCAG 61.858 66.667 0.00 0.00 0.00 4.24
4442 5787 3.803082 CCCAACAGCATCGCCGTG 61.803 66.667 0.00 0.00 0.00 4.94
4556 5901 0.038159 CCGTCAAGAAGAGGAACGCT 60.038 55.000 0.00 0.00 43.09 5.07
4585 5930 2.916052 AACTCGAAGCTGGACGCGA 61.916 57.895 15.93 0.00 45.59 5.87
4600 5945 2.024319 GCGCTGCTCGAGTTCAACT 61.024 57.895 15.13 0.00 41.67 3.16
4667 6012 4.247380 GGAGAGCCGCTCATGGGG 62.247 72.222 22.29 0.00 45.81 4.96
4729 6074 0.613260 CATCACCCCAAAGACCGAGA 59.387 55.000 0.00 0.00 0.00 4.04
4739 6084 4.100084 CTCGGCAGCATCACCCCA 62.100 66.667 0.00 0.00 0.00 4.96
4802 6147 2.687200 CCCACCATCACCTCCGGA 60.687 66.667 2.93 2.93 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.