Multiple sequence alignment - TraesCS2B01G554700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G554700 chr2B 100.000 4500 0 0 1 4500 749799569 749804068 0.000000e+00 8311.0
1 TraesCS2B01G554700 chr2B 75.590 848 185 17 2476 3309 117992690 117991851 2.520000e-107 399.0
2 TraesCS2B01G554700 chr2B 74.945 910 205 21 2450 3343 9145179 9146081 3.260000e-106 396.0
3 TraesCS2B01G554700 chr2B 92.308 260 20 0 262 521 198355841 198356100 1.980000e-98 370.0
4 TraesCS2B01G554700 chr2B 72.386 880 211 28 2488 3348 4752725 4751859 2.690000e-62 250.0
5 TraesCS2B01G554700 chr2B 80.851 141 22 4 3634 3773 630135494 630135358 6.160000e-19 106.0
6 TraesCS2B01G554700 chr2B 79.710 138 28 0 3173 3310 729768906 729769043 2.860000e-17 100.0
7 TraesCS2B01G554700 chr2D 94.888 3971 95 26 521 4450 615380993 615384896 0.000000e+00 6109.0
8 TraesCS2B01G554700 chr2D 92.992 371 8 3 4130 4494 615387953 615388311 3.990000e-145 525.0
9 TraesCS2B01G554700 chr2D 75.469 852 179 24 2476 3309 76752468 76751629 5.460000e-104 388.0
10 TraesCS2B01G554700 chr2D 72.422 892 216 27 2475 3348 380688892 380688013 1.610000e-64 257.0
11 TraesCS2B01G554700 chr2D 72.480 883 205 34 2488 3348 8347359 8346493 2.690000e-62 250.0
12 TraesCS2B01G554700 chr2D 86.792 212 26 2 53 263 537518192 537518402 7.530000e-58 235.0
13 TraesCS2B01G554700 chr2D 82.843 204 23 8 3634 3836 530258554 530258362 5.980000e-39 172.0
14 TraesCS2B01G554700 chr2D 93.333 75 5 0 745 819 615381148 615381222 1.320000e-20 111.0
15 TraesCS2B01G554700 chr2D 79.710 138 28 0 3173 3310 599928736 599928873 2.860000e-17 100.0
16 TraesCS2B01G554700 chr2D 100.000 35 0 0 4466 4500 615384881 615384915 1.040000e-06 65.8
17 TraesCS2B01G554700 chr2A 95.963 3765 97 17 745 4500 745389919 745393637 0.000000e+00 6059.0
18 TraesCS2B01G554700 chr2A 90.406 271 25 1 258 528 766580737 766580468 5.540000e-94 355.0
19 TraesCS2B01G554700 chr2A 93.562 233 15 0 4025 4257 745395750 745395982 9.260000e-92 348.0
20 TraesCS2B01G554700 chr2A 83.230 322 41 12 4187 4500 700084649 700084333 2.650000e-72 283.0
21 TraesCS2B01G554700 chr2A 81.931 321 41 14 4187 4495 700090170 700089855 5.780000e-64 255.0
22 TraesCS2B01G554700 chr2A 89.252 214 9 5 527 726 745389781 745389994 5.780000e-64 255.0
23 TraesCS2B01G554700 chr2A 74.326 631 133 23 2486 3094 733630499 733631122 1.620000e-59 241.0
24 TraesCS2B01G554700 chr2A 95.349 129 5 1 4372 4500 745396036 745396163 2.120000e-48 204.0
25 TraesCS2B01G554700 chr2A 81.250 96 8 6 3758 3845 675735721 675735628 8.080000e-08 69.4
26 TraesCS2B01G554700 chr7B 75.231 864 177 30 2476 3319 604099313 604098467 4.250000e-100 375.0
27 TraesCS2B01G554700 chr7B 89.552 67 4 3 3434 3499 68533811 68533875 1.040000e-11 82.4
28 TraesCS2B01G554700 chr1A 92.692 260 19 0 262 521 169651930 169652189 4.250000e-100 375.0
29 TraesCS2B01G554700 chr1A 90.909 264 24 0 262 525 510614375 510614638 5.540000e-94 355.0
30 TraesCS2B01G554700 chr4D 92.045 264 20 1 259 521 444245119 444245382 1.980000e-98 370.0
31 TraesCS2B01G554700 chr4D 83.691 233 16 16 3498 3726 47286577 47286791 2.750000e-47 200.0
32 TraesCS2B01G554700 chr4D 81.124 249 25 11 3792 4038 47288384 47288612 3.580000e-41 180.0
33 TraesCS2B01G554700 chr4D 92.424 66 5 0 3434 3499 464534072 464534007 1.330000e-15 95.3
34 TraesCS2B01G554700 chr6A 90.876 274 23 2 259 531 505243325 505243597 2.560000e-97 366.0
35 TraesCS2B01G554700 chr3B 91.603 262 20 1 260 521 737938151 737938410 1.190000e-95 361.0
36 TraesCS2B01G554700 chr3B 86.256 211 24 5 56 263 495478028 495477820 1.630000e-54 224.0
37 TraesCS2B01G554700 chr6D 91.860 258 19 1 262 519 438891957 438891702 4.280000e-95 359.0
38 TraesCS2B01G554700 chr6D 78.136 279 39 12 4158 4428 56057871 56057607 1.680000e-34 158.0
39 TraesCS2B01G554700 chr4A 91.221 262 21 2 261 521 674617055 674616795 5.540000e-94 355.0
40 TraesCS2B01G554700 chr4A 79.789 569 49 18 3501 4040 551216027 551215496 1.990000e-93 353.0
41 TraesCS2B01G554700 chr4A 74.157 623 155 6 2475 3094 738515574 738516193 2.080000e-63 254.0
42 TraesCS2B01G554700 chr4B 80.577 520 48 17 3544 4040 68895131 68895620 7.160000e-93 351.0
43 TraesCS2B01G554700 chr4B 81.412 425 36 12 3544 3948 68669944 68670345 1.570000e-79 307.0
44 TraesCS2B01G554700 chr4B 87.879 66 6 2 3434 3498 479394683 479394747 4.830000e-10 76.8
45 TraesCS2B01G554700 chr7D 74.634 820 184 21 2475 3279 543562145 543561335 1.550000e-89 340.0
46 TraesCS2B01G554700 chr7D 74.276 863 187 28 2476 3319 556718100 556717254 9.330000e-87 331.0
47 TraesCS2B01G554700 chr7D 85.990 207 29 0 57 263 121514051 121514257 5.860000e-54 222.0
48 TraesCS2B01G554700 chrUn 74.087 876 197 25 2452 3309 365695993 365695130 2.590000e-87 333.0
49 TraesCS2B01G554700 chr5A 83.540 322 38 13 4187 4500 474451351 474451665 2.050000e-73 287.0
50 TraesCS2B01G554700 chr5D 86.547 223 29 1 41 263 544214101 544214322 1.250000e-60 244.0
51 TraesCS2B01G554700 chr3D 85.648 216 25 5 53 263 123619499 123619713 5.860000e-54 222.0
52 TraesCS2B01G554700 chr3D 85.068 221 25 6 41 258 482343566 482343781 7.580000e-53 219.0
53 TraesCS2B01G554700 chr3D 82.659 173 25 4 4330 4500 433298300 433298131 1.010000e-31 148.0
54 TraesCS2B01G554700 chr3D 89.552 67 5 2 3434 3499 121211814 121211879 2.880000e-12 84.2
55 TraesCS2B01G554700 chr3D 86.364 66 7 2 3434 3498 361694069 361694005 2.250000e-08 71.3
56 TraesCS2B01G554700 chr3D 85.294 68 6 4 3434 3499 362049657 362049592 2.910000e-07 67.6
57 TraesCS2B01G554700 chr1B 85.990 207 29 0 57 263 488818848 488819054 5.860000e-54 222.0
58 TraesCS2B01G554700 chr6B 84.000 225 34 2 39 263 507910827 507910605 9.800000e-52 215.0
59 TraesCS2B01G554700 chr7A 82.305 243 37 6 20 261 428818317 428818080 5.900000e-49 206.0
60 TraesCS2B01G554700 chr7A 80.000 285 43 10 4158 4435 734621593 734621316 9.870000e-47 198.0
61 TraesCS2B01G554700 chr7A 86.567 67 7 2 3434 3499 675187496 675187561 6.240000e-09 73.1
62 TraesCS2B01G554700 chr3A 80.292 274 39 11 4158 4423 7360954 7361220 4.590000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G554700 chr2B 749799569 749804068 4499 False 8311.0 8311 100.00000 1 4500 1 chr2B.!!$F4 4499
1 TraesCS2B01G554700 chr2B 117991851 117992690 839 True 399.0 399 75.59000 2476 3309 1 chr2B.!!$R2 833
2 TraesCS2B01G554700 chr2B 9145179 9146081 902 False 396.0 396 74.94500 2450 3343 1 chr2B.!!$F1 893
3 TraesCS2B01G554700 chr2B 4751859 4752725 866 True 250.0 250 72.38600 2488 3348 1 chr2B.!!$R1 860
4 TraesCS2B01G554700 chr2D 615380993 615388311 7318 False 1702.7 6109 95.30325 521 4500 4 chr2D.!!$F3 3979
5 TraesCS2B01G554700 chr2D 76751629 76752468 839 True 388.0 388 75.46900 2476 3309 1 chr2D.!!$R2 833
6 TraesCS2B01G554700 chr2D 380688013 380688892 879 True 257.0 257 72.42200 2475 3348 1 chr2D.!!$R3 873
7 TraesCS2B01G554700 chr2D 8346493 8347359 866 True 250.0 250 72.48000 2488 3348 1 chr2D.!!$R1 860
8 TraesCS2B01G554700 chr2A 745389781 745396163 6382 False 1716.5 6059 93.53150 527 4500 4 chr2A.!!$F2 3973
9 TraesCS2B01G554700 chr2A 733630499 733631122 623 False 241.0 241 74.32600 2486 3094 1 chr2A.!!$F1 608
10 TraesCS2B01G554700 chr7B 604098467 604099313 846 True 375.0 375 75.23100 2476 3319 1 chr7B.!!$R1 843
11 TraesCS2B01G554700 chr4A 551215496 551216027 531 True 353.0 353 79.78900 3501 4040 1 chr4A.!!$R1 539
12 TraesCS2B01G554700 chr4A 738515574 738516193 619 False 254.0 254 74.15700 2475 3094 1 chr4A.!!$F1 619
13 TraesCS2B01G554700 chr7D 543561335 543562145 810 True 340.0 340 74.63400 2475 3279 1 chr7D.!!$R1 804
14 TraesCS2B01G554700 chr7D 556717254 556718100 846 True 331.0 331 74.27600 2476 3319 1 chr7D.!!$R2 843
15 TraesCS2B01G554700 chrUn 365695130 365695993 863 True 333.0 333 74.08700 2452 3309 1 chrUn.!!$R1 857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
130 131 0.035317 ACAAGATCAACTGCGGCAGA 59.965 50.0 34.70 14.79 35.18 4.26 F
966 998 0.108329 AATTCTCCACCACGCGTAGG 60.108 55.0 13.44 18.52 0.00 3.18 F
1710 1754 0.109781 CCCTGACGCCAAATTTCACG 60.110 55.0 7.61 7.61 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1353 1397 0.383590 CGTTGGTTGTGACATTGGCA 59.616 50.000 0.00 0.0 0.00 4.92 R
1919 1963 0.463204 GCAGCTGCAGAGTGGATCTA 59.537 55.000 33.36 0.0 41.59 1.98 R
3688 3776 1.892474 CCCCAGGAATGCGAAAAGAAA 59.108 47.619 0.00 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.367039 TCCTTCTTGGACTACCTTTTGG 57.633 45.455 0.00 0.00 42.44 3.28
25 26 2.820197 CCTTCTTGGACTACCTTTTGGC 59.180 50.000 0.00 0.00 40.17 4.52
26 27 3.498661 CCTTCTTGGACTACCTTTTGGCT 60.499 47.826 0.00 0.00 40.17 4.75
27 28 3.140325 TCTTGGACTACCTTTTGGCTG 57.860 47.619 0.00 0.00 45.59 4.85
28 29 2.162681 CTTGGACTACCTTTTGGCTGG 58.837 52.381 0.00 0.00 45.59 4.85
29 30 1.440618 TGGACTACCTTTTGGCTGGA 58.559 50.000 0.00 0.00 45.59 3.86
30 31 1.073284 TGGACTACCTTTTGGCTGGAC 59.927 52.381 0.00 0.00 45.59 4.02
31 32 1.351350 GGACTACCTTTTGGCTGGACT 59.649 52.381 0.00 0.00 45.59 3.85
32 33 2.427506 GACTACCTTTTGGCTGGACTG 58.572 52.381 0.00 0.00 45.59 3.51
33 34 1.073923 ACTACCTTTTGGCTGGACTGG 59.926 52.381 0.00 0.00 45.59 4.00
34 35 1.351017 CTACCTTTTGGCTGGACTGGA 59.649 52.381 0.00 0.00 45.59 3.86
35 36 0.111253 ACCTTTTGGCTGGACTGGAG 59.889 55.000 0.00 0.00 45.59 3.86
36 37 1.246737 CCTTTTGGCTGGACTGGAGC 61.247 60.000 0.00 0.00 35.57 4.70
37 38 0.538057 CTTTTGGCTGGACTGGAGCA 60.538 55.000 0.00 0.00 38.27 4.26
38 39 0.112995 TTTTGGCTGGACTGGAGCAT 59.887 50.000 0.00 0.00 38.27 3.79
39 40 0.609957 TTTGGCTGGACTGGAGCATG 60.610 55.000 0.00 0.00 38.27 4.06
40 41 1.782201 TTGGCTGGACTGGAGCATGT 61.782 55.000 0.00 0.00 38.27 3.21
41 42 0.909133 TGGCTGGACTGGAGCATGTA 60.909 55.000 0.00 0.00 38.27 2.29
42 43 0.462759 GGCTGGACTGGAGCATGTAC 60.463 60.000 0.00 0.00 38.27 2.90
43 44 0.539051 GCTGGACTGGAGCATGTACT 59.461 55.000 0.00 0.00 36.40 2.73
44 45 1.472376 GCTGGACTGGAGCATGTACTC 60.472 57.143 0.00 0.00 36.40 2.59
45 46 2.106566 CTGGACTGGAGCATGTACTCT 58.893 52.381 0.00 0.00 36.87 3.24
46 47 2.100584 CTGGACTGGAGCATGTACTCTC 59.899 54.545 0.00 0.00 36.87 3.20
47 48 2.291865 TGGACTGGAGCATGTACTCTCT 60.292 50.000 0.00 0.00 36.87 3.10
48 49 2.763448 GGACTGGAGCATGTACTCTCTT 59.237 50.000 0.00 0.00 36.87 2.85
49 50 3.196685 GGACTGGAGCATGTACTCTCTTT 59.803 47.826 0.00 0.00 36.87 2.52
50 51 4.429108 GACTGGAGCATGTACTCTCTTTC 58.571 47.826 0.00 0.00 36.87 2.62
51 52 3.119316 ACTGGAGCATGTACTCTCTTTCG 60.119 47.826 0.00 0.00 36.87 3.46
52 53 2.826128 TGGAGCATGTACTCTCTTTCGT 59.174 45.455 0.00 0.00 36.87 3.85
53 54 3.258372 TGGAGCATGTACTCTCTTTCGTT 59.742 43.478 0.00 0.00 36.87 3.85
54 55 4.246458 GGAGCATGTACTCTCTTTCGTTT 58.754 43.478 0.00 0.00 36.87 3.60
55 56 4.691216 GGAGCATGTACTCTCTTTCGTTTT 59.309 41.667 0.00 0.00 36.87 2.43
56 57 5.867716 GGAGCATGTACTCTCTTTCGTTTTA 59.132 40.000 0.00 0.00 36.87 1.52
57 58 6.367969 GGAGCATGTACTCTCTTTCGTTTTAA 59.632 38.462 0.00 0.00 36.87 1.52
58 59 7.095355 GGAGCATGTACTCTCTTTCGTTTTAAA 60.095 37.037 0.00 0.00 36.87 1.52
59 60 8.149973 AGCATGTACTCTCTTTCGTTTTAAAA 57.850 30.769 0.00 0.00 0.00 1.52
60 61 8.784043 AGCATGTACTCTCTTTCGTTTTAAAAT 58.216 29.630 3.52 0.00 0.00 1.82
72 73 9.820229 CTTTCGTTTTAAAATATAGTGTGCTCA 57.180 29.630 3.52 0.00 0.00 4.26
73 74 9.601971 TTTCGTTTTAAAATATAGTGTGCTCAC 57.398 29.630 10.92 10.92 44.15 3.51
83 84 2.863658 GTGTGCTCACGCTTTCTAAG 57.136 50.000 2.72 0.00 38.69 2.18
84 85 2.404215 GTGTGCTCACGCTTTCTAAGA 58.596 47.619 2.72 0.00 38.69 2.10
85 86 2.996621 GTGTGCTCACGCTTTCTAAGAT 59.003 45.455 2.72 0.00 38.69 2.40
86 87 3.433615 GTGTGCTCACGCTTTCTAAGATT 59.566 43.478 2.72 0.00 38.69 2.40
87 88 3.679980 TGTGCTCACGCTTTCTAAGATTC 59.320 43.478 0.00 0.00 36.97 2.52
88 89 3.679980 GTGCTCACGCTTTCTAAGATTCA 59.320 43.478 0.00 0.00 36.97 2.57
89 90 4.152402 GTGCTCACGCTTTCTAAGATTCAA 59.848 41.667 0.00 0.00 36.97 2.69
90 91 4.152402 TGCTCACGCTTTCTAAGATTCAAC 59.848 41.667 0.00 0.00 36.97 3.18
91 92 4.390297 GCTCACGCTTTCTAAGATTCAACT 59.610 41.667 0.00 0.00 0.00 3.16
92 93 5.106908 GCTCACGCTTTCTAAGATTCAACTT 60.107 40.000 0.00 0.00 0.00 2.66
93 94 6.566753 GCTCACGCTTTCTAAGATTCAACTTT 60.567 38.462 0.00 0.00 0.00 2.66
94 95 7.259290 TCACGCTTTCTAAGATTCAACTTTT 57.741 32.000 0.00 0.00 0.00 2.27
95 96 8.373048 TCACGCTTTCTAAGATTCAACTTTTA 57.627 30.769 0.00 0.00 0.00 1.52
96 97 8.280497 TCACGCTTTCTAAGATTCAACTTTTAC 58.720 33.333 0.00 0.00 0.00 2.01
97 98 7.266335 CACGCTTTCTAAGATTCAACTTTTACG 59.734 37.037 0.00 0.00 0.00 3.18
98 99 7.170320 ACGCTTTCTAAGATTCAACTTTTACGA 59.830 33.333 0.00 0.00 0.00 3.43
99 100 8.169268 CGCTTTCTAAGATTCAACTTTTACGAT 58.831 33.333 0.00 0.00 0.00 3.73
121 122 9.559958 ACGATAAATTCAATCAACAAGATCAAC 57.440 29.630 0.00 0.00 35.39 3.18
122 123 9.778993 CGATAAATTCAATCAACAAGATCAACT 57.221 29.630 0.00 0.00 35.39 3.16
124 125 7.647907 AAATTCAATCAACAAGATCAACTGC 57.352 32.000 0.00 0.00 35.39 4.40
125 126 4.408993 TCAATCAACAAGATCAACTGCG 57.591 40.909 0.00 0.00 35.39 5.18
126 127 3.189080 TCAATCAACAAGATCAACTGCGG 59.811 43.478 0.00 0.00 35.39 5.69
127 128 0.874390 TCAACAAGATCAACTGCGGC 59.126 50.000 0.00 0.00 0.00 6.53
128 129 0.592637 CAACAAGATCAACTGCGGCA 59.407 50.000 1.29 1.29 0.00 5.69
129 130 0.877071 AACAAGATCAACTGCGGCAG 59.123 50.000 27.43 27.43 37.52 4.85
130 131 0.035317 ACAAGATCAACTGCGGCAGA 59.965 50.000 34.70 14.79 35.18 4.26
131 132 1.159285 CAAGATCAACTGCGGCAGAA 58.841 50.000 34.70 19.61 35.18 3.02
132 133 1.129998 CAAGATCAACTGCGGCAGAAG 59.870 52.381 34.70 24.42 35.18 2.85
133 134 0.610174 AGATCAACTGCGGCAGAAGA 59.390 50.000 34.70 28.15 35.18 2.87
134 135 1.002430 AGATCAACTGCGGCAGAAGAA 59.998 47.619 34.70 17.26 35.18 2.52
135 136 1.806542 GATCAACTGCGGCAGAAGAAA 59.193 47.619 34.70 15.61 35.18 2.52
136 137 1.674359 TCAACTGCGGCAGAAGAAAA 58.326 45.000 34.70 11.71 35.18 2.29
137 138 2.020720 TCAACTGCGGCAGAAGAAAAA 58.979 42.857 34.70 10.71 35.18 1.94
190 191 7.158099 AGGAATTCACTGGTATAACTTTTGC 57.842 36.000 7.93 0.00 0.00 3.68
191 192 6.948309 AGGAATTCACTGGTATAACTTTTGCT 59.052 34.615 7.93 0.00 0.00 3.91
192 193 7.121315 AGGAATTCACTGGTATAACTTTTGCTC 59.879 37.037 7.93 0.00 0.00 4.26
193 194 7.121315 GGAATTCACTGGTATAACTTTTGCTCT 59.879 37.037 7.93 0.00 0.00 4.09
194 195 7.617041 ATTCACTGGTATAACTTTTGCTCTC 57.383 36.000 0.00 0.00 0.00 3.20
195 196 5.168569 TCACTGGTATAACTTTTGCTCTCG 58.831 41.667 0.00 0.00 0.00 4.04
196 197 3.933332 ACTGGTATAACTTTTGCTCTCGC 59.067 43.478 0.00 0.00 0.00 5.03
197 198 3.267483 TGGTATAACTTTTGCTCTCGCC 58.733 45.455 0.00 0.00 34.43 5.54
198 199 2.284417 GGTATAACTTTTGCTCTCGCCG 59.716 50.000 0.00 0.00 34.43 6.46
199 200 2.094762 ATAACTTTTGCTCTCGCCGT 57.905 45.000 0.00 0.00 34.43 5.68
200 201 2.728690 TAACTTTTGCTCTCGCCGTA 57.271 45.000 0.00 0.00 34.43 4.02
201 202 1.429463 AACTTTTGCTCTCGCCGTAG 58.571 50.000 0.00 0.00 34.43 3.51
202 203 0.317479 ACTTTTGCTCTCGCCGTAGT 59.683 50.000 0.00 0.00 34.43 2.73
203 204 0.992802 CTTTTGCTCTCGCCGTAGTC 59.007 55.000 0.00 0.00 34.43 2.59
204 205 0.731514 TTTTGCTCTCGCCGTAGTCG 60.732 55.000 0.00 0.00 34.43 4.18
214 215 4.759564 CGTAGTCGGTCTCGTTGG 57.240 61.111 0.00 0.00 37.69 3.77
215 216 1.871772 CGTAGTCGGTCTCGTTGGT 59.128 57.895 0.00 0.00 37.69 3.67
216 217 0.239347 CGTAGTCGGTCTCGTTGGTT 59.761 55.000 0.00 0.00 37.69 3.67
217 218 1.464608 CGTAGTCGGTCTCGTTGGTTA 59.535 52.381 0.00 0.00 37.69 2.85
218 219 2.095768 CGTAGTCGGTCTCGTTGGTTAA 60.096 50.000 0.00 0.00 37.69 2.01
219 220 3.609175 CGTAGTCGGTCTCGTTGGTTAAA 60.609 47.826 0.00 0.00 37.69 1.52
220 221 3.672767 AGTCGGTCTCGTTGGTTAAAT 57.327 42.857 0.00 0.00 37.69 1.40
221 222 3.999046 AGTCGGTCTCGTTGGTTAAATT 58.001 40.909 0.00 0.00 37.69 1.82
222 223 4.383173 AGTCGGTCTCGTTGGTTAAATTT 58.617 39.130 0.00 0.00 37.69 1.82
223 224 5.540911 AGTCGGTCTCGTTGGTTAAATTTA 58.459 37.500 0.00 0.00 37.69 1.40
224 225 6.168389 AGTCGGTCTCGTTGGTTAAATTTAT 58.832 36.000 0.00 0.00 37.69 1.40
225 226 6.091713 AGTCGGTCTCGTTGGTTAAATTTATG 59.908 38.462 0.00 0.00 37.69 1.90
226 227 6.091169 GTCGGTCTCGTTGGTTAAATTTATGA 59.909 38.462 0.00 0.00 37.69 2.15
227 228 6.819649 TCGGTCTCGTTGGTTAAATTTATGAT 59.180 34.615 0.00 0.00 37.69 2.45
228 229 7.010738 TCGGTCTCGTTGGTTAAATTTATGATC 59.989 37.037 0.00 0.00 37.69 2.92
229 230 7.201574 CGGTCTCGTTGGTTAAATTTATGATCA 60.202 37.037 0.00 0.00 0.00 2.92
230 231 8.455682 GGTCTCGTTGGTTAAATTTATGATCAA 58.544 33.333 0.00 0.00 0.00 2.57
231 232 9.834628 GTCTCGTTGGTTAAATTTATGATCAAA 57.165 29.630 0.00 0.00 0.00 2.69
233 234 9.840427 CTCGTTGGTTAAATTTATGATCAAAGT 57.160 29.630 0.00 0.00 0.00 2.66
243 244 8.752766 AATTTATGATCAAAGTTGAAGCACAG 57.247 30.769 0.00 0.00 41.13 3.66
244 245 4.778534 ATGATCAAAGTTGAAGCACAGG 57.221 40.909 0.00 0.00 41.13 4.00
245 246 3.819368 TGATCAAAGTTGAAGCACAGGA 58.181 40.909 0.00 0.00 41.13 3.86
246 247 4.206375 TGATCAAAGTTGAAGCACAGGAA 58.794 39.130 0.00 0.00 41.13 3.36
247 248 4.828939 TGATCAAAGTTGAAGCACAGGAAT 59.171 37.500 0.00 0.00 41.13 3.01
248 249 6.003326 TGATCAAAGTTGAAGCACAGGAATA 58.997 36.000 0.00 0.00 41.13 1.75
249 250 5.947228 TCAAAGTTGAAGCACAGGAATAG 57.053 39.130 0.00 0.00 33.55 1.73
250 251 5.620206 TCAAAGTTGAAGCACAGGAATAGA 58.380 37.500 0.00 0.00 33.55 1.98
251 252 5.702670 TCAAAGTTGAAGCACAGGAATAGAG 59.297 40.000 0.00 0.00 33.55 2.43
252 253 4.213564 AGTTGAAGCACAGGAATAGAGG 57.786 45.455 0.00 0.00 0.00 3.69
253 254 3.840666 AGTTGAAGCACAGGAATAGAGGA 59.159 43.478 0.00 0.00 0.00 3.71
254 255 4.287067 AGTTGAAGCACAGGAATAGAGGAA 59.713 41.667 0.00 0.00 0.00 3.36
255 256 4.478206 TGAAGCACAGGAATAGAGGAAG 57.522 45.455 0.00 0.00 0.00 3.46
256 257 2.998316 AGCACAGGAATAGAGGAAGC 57.002 50.000 0.00 0.00 0.00 3.86
257 258 2.191400 AGCACAGGAATAGAGGAAGCA 58.809 47.619 0.00 0.00 0.00 3.91
258 259 2.776536 AGCACAGGAATAGAGGAAGCAT 59.223 45.455 0.00 0.00 0.00 3.79
259 260 3.201708 AGCACAGGAATAGAGGAAGCATT 59.798 43.478 0.00 0.00 0.00 3.56
260 261 4.410228 AGCACAGGAATAGAGGAAGCATTA 59.590 41.667 0.00 0.00 0.00 1.90
261 262 5.072872 AGCACAGGAATAGAGGAAGCATTAT 59.927 40.000 0.00 0.00 0.00 1.28
262 263 6.270927 AGCACAGGAATAGAGGAAGCATTATA 59.729 38.462 0.00 0.00 0.00 0.98
263 264 6.370166 GCACAGGAATAGAGGAAGCATTATAC 59.630 42.308 0.00 0.00 0.00 1.47
264 265 7.675062 CACAGGAATAGAGGAAGCATTATACT 58.325 38.462 0.00 0.00 0.00 2.12
265 266 7.816995 CACAGGAATAGAGGAAGCATTATACTC 59.183 40.741 0.00 0.00 0.00 2.59
266 267 7.038658 ACAGGAATAGAGGAAGCATTATACTCC 60.039 40.741 0.00 0.00 0.00 3.85
267 268 6.442244 AGGAATAGAGGAAGCATTATACTCCC 59.558 42.308 0.00 0.00 0.00 4.30
268 269 6.442244 GGAATAGAGGAAGCATTATACTCCCT 59.558 42.308 0.00 0.00 0.00 4.20
269 270 7.364320 GGAATAGAGGAAGCATTATACTCCCTC 60.364 44.444 0.00 0.00 39.08 4.30
270 271 4.164204 AGAGGAAGCATTATACTCCCTCC 58.836 47.826 0.00 0.00 39.48 4.30
271 272 2.900546 AGGAAGCATTATACTCCCTCCG 59.099 50.000 0.00 0.00 0.00 4.63
272 273 2.633481 GGAAGCATTATACTCCCTCCGT 59.367 50.000 0.00 0.00 0.00 4.69
273 274 3.071167 GGAAGCATTATACTCCCTCCGTT 59.929 47.826 0.00 0.00 0.00 4.44
274 275 4.444449 GGAAGCATTATACTCCCTCCGTTT 60.444 45.833 0.00 0.00 0.00 3.60
275 276 4.772886 AGCATTATACTCCCTCCGTTTT 57.227 40.909 0.00 0.00 0.00 2.43
276 277 5.112129 AGCATTATACTCCCTCCGTTTTT 57.888 39.130 0.00 0.00 0.00 1.94
277 278 6.243216 AGCATTATACTCCCTCCGTTTTTA 57.757 37.500 0.00 0.00 0.00 1.52
278 279 6.838382 AGCATTATACTCCCTCCGTTTTTAT 58.162 36.000 0.00 0.00 0.00 1.40
279 280 7.287810 AGCATTATACTCCCTCCGTTTTTATT 58.712 34.615 0.00 0.00 0.00 1.40
280 281 7.778382 AGCATTATACTCCCTCCGTTTTTATTT 59.222 33.333 0.00 0.00 0.00 1.40
281 282 9.059260 GCATTATACTCCCTCCGTTTTTATTTA 57.941 33.333 0.00 0.00 0.00 1.40
287 288 7.993101 ACTCCCTCCGTTTTTATTTAATTAGC 58.007 34.615 0.00 0.00 0.00 3.09
288 289 7.018635 TCCCTCCGTTTTTATTTAATTAGCG 57.981 36.000 0.00 0.00 0.00 4.26
289 290 6.598850 TCCCTCCGTTTTTATTTAATTAGCGT 59.401 34.615 0.00 0.00 0.00 5.07
290 291 7.768120 TCCCTCCGTTTTTATTTAATTAGCGTA 59.232 33.333 0.00 0.00 0.00 4.42
291 292 8.562052 CCCTCCGTTTTTATTTAATTAGCGTAT 58.438 33.333 0.00 0.00 0.00 3.06
292 293 9.940166 CCTCCGTTTTTATTTAATTAGCGTATT 57.060 29.630 0.00 0.00 0.00 1.89
303 304 8.495361 TTTAATTAGCGTATTAGCTTTGGTCA 57.505 30.769 0.00 0.00 46.80 4.02
304 305 6.995511 AATTAGCGTATTAGCTTTGGTCAA 57.004 33.333 0.00 0.00 46.80 3.18
305 306 6.995511 ATTAGCGTATTAGCTTTGGTCAAA 57.004 33.333 0.00 0.00 46.80 2.69
306 307 4.946784 AGCGTATTAGCTTTGGTCAAAG 57.053 40.909 16.57 16.57 46.80 2.77
307 308 4.324267 AGCGTATTAGCTTTGGTCAAAGT 58.676 39.130 20.33 12.06 46.80 2.66
308 309 4.392138 AGCGTATTAGCTTTGGTCAAAGTC 59.608 41.667 20.33 14.14 46.80 3.01
309 310 6.029289 AGCGTATTAGCTTTGGTCAAAGTCA 61.029 40.000 20.33 9.22 46.80 3.41
310 311 7.460287 AGCGTATTAGCTTTGGTCAAAGTCAA 61.460 38.462 20.33 15.46 46.80 3.18
311 312 9.162451 AGCGTATTAGCTTTGGTCAAAGTCAAG 62.162 40.741 20.33 9.92 46.80 3.02
375 376 8.634444 TGGCATATACAATAACAAACCAATACC 58.366 33.333 0.00 0.00 0.00 2.73
376 377 8.634444 GGCATATACAATAACAAACCAATACCA 58.366 33.333 0.00 0.00 0.00 3.25
388 389 9.874205 AACAAACCAATACCATTAGATTCATTG 57.126 29.630 0.00 0.00 0.00 2.82
389 390 9.034800 ACAAACCAATACCATTAGATTCATTGT 57.965 29.630 0.00 0.00 0.00 2.71
390 391 9.874205 CAAACCAATACCATTAGATTCATTGTT 57.126 29.630 0.00 0.00 0.00 2.83
391 392 9.874205 AAACCAATACCATTAGATTCATTGTTG 57.126 29.630 0.00 0.00 0.00 3.33
392 393 8.821686 ACCAATACCATTAGATTCATTGTTGA 57.178 30.769 0.00 0.00 0.00 3.18
393 394 9.253832 ACCAATACCATTAGATTCATTGTTGAA 57.746 29.630 0.00 0.00 45.57 2.69
483 484 6.332735 ACTTTAGGAAGTTTGATTTCAGCC 57.667 37.500 0.00 0.00 43.48 4.85
484 485 5.833131 ACTTTAGGAAGTTTGATTTCAGCCA 59.167 36.000 0.00 0.00 43.48 4.75
485 486 6.323739 ACTTTAGGAAGTTTGATTTCAGCCAA 59.676 34.615 0.00 0.00 43.48 4.52
486 487 4.590850 AGGAAGTTTGATTTCAGCCAAC 57.409 40.909 0.00 0.00 0.00 3.77
487 488 4.218312 AGGAAGTTTGATTTCAGCCAACT 58.782 39.130 0.00 0.00 0.00 3.16
488 489 4.279420 AGGAAGTTTGATTTCAGCCAACTC 59.721 41.667 0.00 0.00 0.00 3.01
489 490 4.279420 GGAAGTTTGATTTCAGCCAACTCT 59.721 41.667 0.00 0.00 0.00 3.24
490 491 5.473504 GGAAGTTTGATTTCAGCCAACTCTA 59.526 40.000 0.00 0.00 0.00 2.43
491 492 6.016276 GGAAGTTTGATTTCAGCCAACTCTAA 60.016 38.462 0.00 0.00 0.00 2.10
492 493 7.309438 GGAAGTTTGATTTCAGCCAACTCTAAT 60.309 37.037 0.00 0.00 0.00 1.73
493 494 8.635765 AAGTTTGATTTCAGCCAACTCTAATA 57.364 30.769 0.00 0.00 0.00 0.98
494 495 8.814038 AGTTTGATTTCAGCCAACTCTAATAT 57.186 30.769 0.00 0.00 0.00 1.28
495 496 8.680903 AGTTTGATTTCAGCCAACTCTAATATG 58.319 33.333 0.00 0.00 0.00 1.78
496 497 6.624352 TGATTTCAGCCAACTCTAATATGC 57.376 37.500 0.00 0.00 0.00 3.14
497 498 5.237127 TGATTTCAGCCAACTCTAATATGCG 59.763 40.000 0.00 0.00 0.00 4.73
498 499 3.111853 TCAGCCAACTCTAATATGCGG 57.888 47.619 0.00 0.00 0.00 5.69
499 500 2.698274 TCAGCCAACTCTAATATGCGGA 59.302 45.455 0.00 0.00 0.00 5.54
500 501 3.062763 CAGCCAACTCTAATATGCGGAG 58.937 50.000 0.00 0.00 0.00 4.63
501 502 2.700897 AGCCAACTCTAATATGCGGAGT 59.299 45.455 0.00 0.00 41.37 3.85
502 503 3.895656 AGCCAACTCTAATATGCGGAGTA 59.104 43.478 6.10 0.00 39.09 2.59
503 504 4.344102 AGCCAACTCTAATATGCGGAGTAA 59.656 41.667 6.10 0.00 39.09 2.24
504 505 5.054477 GCCAACTCTAATATGCGGAGTAAA 58.946 41.667 6.10 0.00 39.09 2.01
505 506 5.701290 GCCAACTCTAATATGCGGAGTAAAT 59.299 40.000 6.10 0.00 39.09 1.40
506 507 6.872020 GCCAACTCTAATATGCGGAGTAAATA 59.128 38.462 6.10 0.00 39.09 1.40
507 508 7.386848 GCCAACTCTAATATGCGGAGTAAATAA 59.613 37.037 6.10 0.00 39.09 1.40
508 509 9.268268 CCAACTCTAATATGCGGAGTAAATAAA 57.732 33.333 6.10 0.00 39.09 1.40
512 513 9.793245 CTCTAATATGCGGAGTAAATAAAAACG 57.207 33.333 0.00 0.00 0.00 3.60
513 514 8.767085 TCTAATATGCGGAGTAAATAAAAACGG 58.233 33.333 0.00 0.00 0.00 4.44
514 515 7.556733 AATATGCGGAGTAAATAAAAACGGA 57.443 32.000 0.00 0.00 0.00 4.69
515 516 4.932268 TGCGGAGTAAATAAAAACGGAG 57.068 40.909 0.00 0.00 0.00 4.63
516 517 3.685756 TGCGGAGTAAATAAAAACGGAGG 59.314 43.478 0.00 0.00 0.00 4.30
517 518 3.064408 GCGGAGTAAATAAAAACGGAGGG 59.936 47.826 0.00 0.00 0.00 4.30
518 519 4.506758 CGGAGTAAATAAAAACGGAGGGA 58.493 43.478 0.00 0.00 0.00 4.20
519 520 4.569564 CGGAGTAAATAAAAACGGAGGGAG 59.430 45.833 0.00 0.00 0.00 4.30
623 624 3.057736 CCAAATGAGCACCTCAGAACAAG 60.058 47.826 1.20 0.00 44.08 3.16
660 684 4.855388 TGTTGACTAACGAAGAGTATTCGC 59.145 41.667 19.19 3.89 44.98 4.70
677 701 5.931441 ATTCGCACAGCTATTCTATTTCC 57.069 39.130 0.00 0.00 0.00 3.13
722 746 5.480642 AATGTTATCATTGGTTGGCACAA 57.519 34.783 0.00 0.00 42.63 3.33
749 778 7.338703 ACTGTCTGACCAAGATTATTCGTACTA 59.661 37.037 5.17 0.00 37.23 1.82
750 779 7.704271 TGTCTGACCAAGATTATTCGTACTAG 58.296 38.462 5.17 0.00 37.23 2.57
751 780 7.338703 TGTCTGACCAAGATTATTCGTACTAGT 59.661 37.037 5.17 0.00 37.23 2.57
867 899 3.649277 CTCCCTCGTTGACCTGCGG 62.649 68.421 0.00 0.00 0.00 5.69
870 902 4.379243 CTCGTTGACCTGCGGCCT 62.379 66.667 0.00 0.00 0.00 5.19
871 903 4.680237 TCGTTGACCTGCGGCCTG 62.680 66.667 0.00 0.00 0.00 4.85
873 905 4.643387 GTTGACCTGCGGCCTGGT 62.643 66.667 13.39 13.39 44.89 4.00
885 917 2.825836 CCTGGTCGCCTGGAATGC 60.826 66.667 13.96 0.00 44.09 3.56
922 954 3.073798 TCCATTTCTAAGCAACTGGACCA 59.926 43.478 0.00 0.00 0.00 4.02
929 961 2.435372 AGCAACTGGACCAAGTTTGA 57.565 45.000 12.34 0.00 38.34 2.69
965 997 0.999406 CAATTCTCCACCACGCGTAG 59.001 55.000 13.44 7.50 0.00 3.51
966 998 0.108329 AATTCTCCACCACGCGTAGG 60.108 55.000 13.44 18.52 0.00 3.18
967 999 0.968901 ATTCTCCACCACGCGTAGGA 60.969 55.000 27.07 24.15 0.00 2.94
968 1000 2.490217 CTCCACCACGCGTAGGAG 59.510 66.667 28.58 28.58 41.43 3.69
969 1001 2.282674 TCCACCACGCGTAGGAGT 60.283 61.111 27.07 14.35 0.00 3.85
970 1002 1.002257 TCCACCACGCGTAGGAGTA 60.002 57.895 27.07 9.72 0.00 2.59
971 1003 1.138247 CCACCACGCGTAGGAGTAC 59.862 63.158 27.07 0.00 0.00 2.73
992 1024 2.749621 CCCCTGTTCATTTCCTTCTTCG 59.250 50.000 0.00 0.00 0.00 3.79
998 1030 2.699954 TCATTTCCTTCTTCGGCTCAC 58.300 47.619 0.00 0.00 0.00 3.51
1218 1262 4.262617 GGTTCAACAAGGTCCCTAAGATC 58.737 47.826 0.00 0.00 0.00 2.75
1269 1313 2.516448 GGTCATCGACCCCATCTCA 58.484 57.895 1.47 0.00 46.19 3.27
1698 1742 2.514592 ATGATTGGCGCCCTGACG 60.515 61.111 26.77 0.00 0.00 4.35
1710 1754 0.109781 CCCTGACGCCAAATTTCACG 60.110 55.000 7.61 7.61 0.00 4.35
1762 1806 0.650512 GTACACATTGCGGGATGACG 59.349 55.000 2.07 0.00 0.00 4.35
1763 1807 0.533032 TACACATTGCGGGATGACGA 59.467 50.000 0.00 0.00 35.47 4.20
1908 1952 2.227388 CTGTGGACCTTTCACAATCTGC 59.773 50.000 0.00 0.00 43.45 4.26
1919 1963 6.395426 TTTCACAATCTGCAGAGAAAATGT 57.605 33.333 22.96 17.00 0.00 2.71
2057 2101 0.106519 AACAAGCCAGGTCTTGCAGT 60.107 50.000 18.42 6.46 45.43 4.40
2058 2102 0.820891 ACAAGCCAGGTCTTGCAGTG 60.821 55.000 18.42 0.00 45.43 3.66
2208 2255 0.453390 GTGGCTGCTCTATTTGGCAC 59.547 55.000 0.00 0.00 45.72 5.01
2315 2362 1.953686 GCTGCCAGAAAGTGTGGTAAA 59.046 47.619 0.00 0.00 37.40 2.01
2395 2442 2.859165 TGTCCTGGTGATTCTTGGAC 57.141 50.000 0.00 0.00 45.22 4.02
2801 2869 5.646360 GGAGTCTCAGATACCAGATAGCTAC 59.354 48.000 0.00 0.00 0.00 3.58
3104 3172 6.039829 GGAAGGAGAAATTCAAGTCAAGTTGT 59.960 38.462 2.11 0.00 0.00 3.32
3499 3573 1.071605 GTGCGTTGGAGTTGCTCTAG 58.928 55.000 0.00 0.00 0.00 2.43
3619 3706 5.303165 TCATATTCCAGCAGATGTGACATC 58.697 41.667 17.46 17.46 0.00 3.06
3715 3804 2.124570 CATTCCTGGGGTCAGCCG 60.125 66.667 0.00 0.00 39.61 5.52
3799 3910 7.872993 GCACTACTGCATATAGGAAAACTCATA 59.127 37.037 9.34 0.00 43.62 2.15
3862 3973 3.197549 TCATAGCACACAGTAGATTGGCA 59.802 43.478 0.00 0.00 0.00 4.92
3878 3989 3.579534 TGGCAAACAAACTACCCACTA 57.420 42.857 0.00 0.00 0.00 2.74
3930 4042 1.351017 TCTTCAAACCTAGGGGCACAG 59.649 52.381 14.81 3.49 35.63 3.66
3962 4074 1.687493 GTAGGAGAGGCTGGCAGGT 60.687 63.158 17.64 0.00 0.00 4.00
4048 4161 0.810426 TTAACAGCCGTCGTGCAACA 60.810 50.000 8.15 0.00 35.74 3.33
4098 4211 0.322187 TCGACGACTGATCCTGACCA 60.322 55.000 0.00 0.00 0.00 4.02
4283 4396 3.330267 CGCCAGATATAAAAGAGGAGGC 58.670 50.000 0.00 0.00 36.33 4.70
4313 4426 2.758130 TGGGCAGAGGACATACATACA 58.242 47.619 0.00 0.00 0.00 2.29
4374 4487 1.139853 GTGCTACAGGGGATCAGAAGG 59.860 57.143 0.00 0.00 0.00 3.46
4381 4494 1.132881 AGGGGATCAGAAGGCCTCTAG 60.133 57.143 5.23 0.00 28.53 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.497942 GCCAAAAGGTAGTCCAAGAAGGA 60.498 47.826 0.00 0.00 46.75 3.36
4 5 2.820197 GCCAAAAGGTAGTCCAAGAAGG 59.180 50.000 0.00 0.00 39.47 3.46
5 6 3.503748 CAGCCAAAAGGTAGTCCAAGAAG 59.496 47.826 0.00 0.00 35.89 2.85
6 7 3.486383 CAGCCAAAAGGTAGTCCAAGAA 58.514 45.455 0.00 0.00 35.89 2.52
7 8 2.224769 CCAGCCAAAAGGTAGTCCAAGA 60.225 50.000 0.00 0.00 35.89 3.02
8 9 2.162681 CCAGCCAAAAGGTAGTCCAAG 58.837 52.381 0.00 0.00 35.89 3.61
9 10 1.777878 TCCAGCCAAAAGGTAGTCCAA 59.222 47.619 0.00 0.00 35.89 3.53
10 11 1.073284 GTCCAGCCAAAAGGTAGTCCA 59.927 52.381 0.00 0.00 35.89 4.02
11 12 1.351350 AGTCCAGCCAAAAGGTAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
12 13 2.427506 CAGTCCAGCCAAAAGGTAGTC 58.572 52.381 0.00 0.00 0.00 2.59
13 14 1.073923 CCAGTCCAGCCAAAAGGTAGT 59.926 52.381 0.00 0.00 0.00 2.73
14 15 1.351017 TCCAGTCCAGCCAAAAGGTAG 59.649 52.381 0.00 0.00 0.00 3.18
15 16 1.351017 CTCCAGTCCAGCCAAAAGGTA 59.649 52.381 0.00 0.00 0.00 3.08
16 17 0.111253 CTCCAGTCCAGCCAAAAGGT 59.889 55.000 0.00 0.00 0.00 3.50
17 18 1.246737 GCTCCAGTCCAGCCAAAAGG 61.247 60.000 0.00 0.00 0.00 3.11
18 19 0.538057 TGCTCCAGTCCAGCCAAAAG 60.538 55.000 0.00 0.00 35.89 2.27
19 20 0.112995 ATGCTCCAGTCCAGCCAAAA 59.887 50.000 0.00 0.00 35.89 2.44
20 21 0.609957 CATGCTCCAGTCCAGCCAAA 60.610 55.000 0.00 0.00 35.89 3.28
21 22 1.001764 CATGCTCCAGTCCAGCCAA 60.002 57.895 0.00 0.00 35.89 4.52
22 23 0.909133 TACATGCTCCAGTCCAGCCA 60.909 55.000 0.00 0.00 35.89 4.75
23 24 0.462759 GTACATGCTCCAGTCCAGCC 60.463 60.000 0.00 0.00 35.89 4.85
24 25 0.539051 AGTACATGCTCCAGTCCAGC 59.461 55.000 0.00 0.00 37.40 4.85
25 26 2.100584 GAGAGTACATGCTCCAGTCCAG 59.899 54.545 0.00 0.00 36.20 3.86
26 27 2.103373 GAGAGTACATGCTCCAGTCCA 58.897 52.381 0.00 0.00 36.20 4.02
27 28 2.383855 AGAGAGTACATGCTCCAGTCC 58.616 52.381 0.00 0.00 36.20 3.85
28 29 4.429108 GAAAGAGAGTACATGCTCCAGTC 58.571 47.826 0.00 0.00 36.20 3.51
29 30 3.119316 CGAAAGAGAGTACATGCTCCAGT 60.119 47.826 0.00 0.00 36.20 4.00
30 31 3.119316 ACGAAAGAGAGTACATGCTCCAG 60.119 47.826 0.00 0.00 36.20 3.86
31 32 2.826128 ACGAAAGAGAGTACATGCTCCA 59.174 45.455 0.00 0.00 36.20 3.86
32 33 3.512033 ACGAAAGAGAGTACATGCTCC 57.488 47.619 0.00 0.00 36.20 4.70
33 34 5.847670 AAAACGAAAGAGAGTACATGCTC 57.152 39.130 0.00 0.00 35.82 4.26
34 35 7.724305 TTTAAAACGAAAGAGAGTACATGCT 57.276 32.000 0.00 0.00 0.00 3.79
35 36 8.950403 ATTTTAAAACGAAAGAGAGTACATGC 57.050 30.769 1.97 0.00 0.00 4.06
46 47 9.820229 TGAGCACACTATATTTTAAAACGAAAG 57.180 29.630 1.97 1.87 0.00 2.62
47 48 9.601971 GTGAGCACACTATATTTTAAAACGAAA 57.398 29.630 7.06 0.00 42.99 3.46
48 49 7.953173 CGTGAGCACACTATATTTTAAAACGAA 59.047 33.333 12.54 0.00 43.99 3.85
49 50 7.449827 CGTGAGCACACTATATTTTAAAACGA 58.550 34.615 12.54 0.00 43.99 3.85
50 51 7.630689 CGTGAGCACACTATATTTTAAAACG 57.369 36.000 12.54 0.00 43.99 3.60
69 70 6.473397 AAGTTGAATCTTAGAAAGCGTGAG 57.527 37.500 0.00 0.00 0.00 3.51
70 71 6.861065 AAAGTTGAATCTTAGAAAGCGTGA 57.139 33.333 0.00 0.00 0.00 4.35
71 72 7.266335 CGTAAAAGTTGAATCTTAGAAAGCGTG 59.734 37.037 0.00 0.00 0.00 5.34
72 73 7.170320 TCGTAAAAGTTGAATCTTAGAAAGCGT 59.830 33.333 0.00 0.00 0.00 5.07
73 74 7.507304 TCGTAAAAGTTGAATCTTAGAAAGCG 58.493 34.615 0.00 0.00 0.00 4.68
95 96 9.559958 GTTGATCTTGTTGATTGAATTTATCGT 57.440 29.630 0.00 0.00 35.14 3.73
96 97 9.778993 AGTTGATCTTGTTGATTGAATTTATCG 57.221 29.630 0.00 0.00 35.14 2.92
98 99 9.362539 GCAGTTGATCTTGTTGATTGAATTTAT 57.637 29.630 0.00 0.00 35.14 1.40
99 100 7.538334 CGCAGTTGATCTTGTTGATTGAATTTA 59.462 33.333 0.00 0.00 35.14 1.40
100 101 6.364165 CGCAGTTGATCTTGTTGATTGAATTT 59.636 34.615 0.00 0.00 35.14 1.82
101 102 5.860182 CGCAGTTGATCTTGTTGATTGAATT 59.140 36.000 0.00 0.00 35.14 2.17
102 103 5.396484 CGCAGTTGATCTTGTTGATTGAAT 58.604 37.500 0.00 0.00 35.14 2.57
103 104 4.320421 CCGCAGTTGATCTTGTTGATTGAA 60.320 41.667 0.00 0.00 35.14 2.69
104 105 3.189080 CCGCAGTTGATCTTGTTGATTGA 59.811 43.478 0.00 0.00 35.14 2.57
105 106 3.495193 CCGCAGTTGATCTTGTTGATTG 58.505 45.455 0.00 0.00 35.14 2.67
106 107 2.095059 GCCGCAGTTGATCTTGTTGATT 60.095 45.455 0.00 0.00 35.14 2.57
107 108 1.470098 GCCGCAGTTGATCTTGTTGAT 59.530 47.619 0.00 0.00 38.27 2.57
108 109 0.874390 GCCGCAGTTGATCTTGTTGA 59.126 50.000 0.00 0.00 0.00 3.18
109 110 0.592637 TGCCGCAGTTGATCTTGTTG 59.407 50.000 0.00 0.00 0.00 3.33
110 111 0.877071 CTGCCGCAGTTGATCTTGTT 59.123 50.000 12.54 0.00 0.00 2.83
111 112 0.035317 TCTGCCGCAGTTGATCTTGT 59.965 50.000 19.77 0.00 32.61 3.16
112 113 1.129998 CTTCTGCCGCAGTTGATCTTG 59.870 52.381 19.77 0.00 32.61 3.02
113 114 1.002430 TCTTCTGCCGCAGTTGATCTT 59.998 47.619 19.77 0.00 32.61 2.40
114 115 0.610174 TCTTCTGCCGCAGTTGATCT 59.390 50.000 19.77 0.00 32.61 2.75
115 116 1.442769 TTCTTCTGCCGCAGTTGATC 58.557 50.000 19.77 0.00 32.61 2.92
116 117 1.896220 TTTCTTCTGCCGCAGTTGAT 58.104 45.000 19.77 0.00 32.61 2.57
117 118 1.674359 TTTTCTTCTGCCGCAGTTGA 58.326 45.000 19.77 15.24 32.61 3.18
118 119 2.490328 TTTTTCTTCTGCCGCAGTTG 57.510 45.000 19.77 13.34 32.61 3.16
164 165 8.903820 GCAAAAGTTATACCAGTGAATTCCTAT 58.096 33.333 2.27 0.00 0.00 2.57
165 166 8.107095 AGCAAAAGTTATACCAGTGAATTCCTA 58.893 33.333 2.27 0.00 0.00 2.94
166 167 6.948309 AGCAAAAGTTATACCAGTGAATTCCT 59.052 34.615 2.27 0.00 0.00 3.36
167 168 7.121315 AGAGCAAAAGTTATACCAGTGAATTCC 59.879 37.037 2.27 0.00 0.00 3.01
168 169 8.045176 AGAGCAAAAGTTATACCAGTGAATTC 57.955 34.615 0.00 0.00 0.00 2.17
169 170 7.148407 CGAGAGCAAAAGTTATACCAGTGAATT 60.148 37.037 0.00 0.00 0.00 2.17
170 171 6.313905 CGAGAGCAAAAGTTATACCAGTGAAT 59.686 38.462 0.00 0.00 0.00 2.57
171 172 5.637810 CGAGAGCAAAAGTTATACCAGTGAA 59.362 40.000 0.00 0.00 0.00 3.18
172 173 5.168569 CGAGAGCAAAAGTTATACCAGTGA 58.831 41.667 0.00 0.00 0.00 3.41
173 174 5.456192 CGAGAGCAAAAGTTATACCAGTG 57.544 43.478 0.00 0.00 0.00 3.66
197 198 0.239347 AACCAACGAGACCGACTACG 59.761 55.000 0.00 0.00 39.50 3.51
198 199 3.559238 TTAACCAACGAGACCGACTAC 57.441 47.619 0.00 0.00 39.50 2.73
199 200 4.789012 ATTTAACCAACGAGACCGACTA 57.211 40.909 0.00 0.00 39.50 2.59
200 201 3.672767 ATTTAACCAACGAGACCGACT 57.327 42.857 0.00 0.00 39.50 4.18
201 202 4.737353 AAATTTAACCAACGAGACCGAC 57.263 40.909 0.00 0.00 39.50 4.79
202 203 6.164876 TCATAAATTTAACCAACGAGACCGA 58.835 36.000 1.21 0.00 39.50 4.69
203 204 6.411630 TCATAAATTTAACCAACGAGACCG 57.588 37.500 1.21 0.00 42.50 4.79
204 205 7.981142 TGATCATAAATTTAACCAACGAGACC 58.019 34.615 1.21 0.00 0.00 3.85
205 206 9.834628 TTTGATCATAAATTTAACCAACGAGAC 57.165 29.630 1.21 0.00 0.00 3.36
207 208 9.840427 ACTTTGATCATAAATTTAACCAACGAG 57.160 29.630 1.21 3.35 0.00 4.18
217 218 9.199982 CTGTGCTTCAACTTTGATCATAAATTT 57.800 29.630 0.00 0.00 37.00 1.82
218 219 7.816031 CCTGTGCTTCAACTTTGATCATAAATT 59.184 33.333 0.00 0.00 37.00 1.82
219 220 7.177216 TCCTGTGCTTCAACTTTGATCATAAAT 59.823 33.333 0.00 0.00 37.00 1.40
220 221 6.489700 TCCTGTGCTTCAACTTTGATCATAAA 59.510 34.615 0.00 0.00 37.00 1.40
221 222 6.003326 TCCTGTGCTTCAACTTTGATCATAA 58.997 36.000 0.00 0.00 37.00 1.90
222 223 5.559770 TCCTGTGCTTCAACTTTGATCATA 58.440 37.500 0.00 0.00 37.00 2.15
223 224 4.401022 TCCTGTGCTTCAACTTTGATCAT 58.599 39.130 0.00 0.00 37.00 2.45
224 225 3.819368 TCCTGTGCTTCAACTTTGATCA 58.181 40.909 0.00 0.00 37.00 2.92
225 226 4.836125 TTCCTGTGCTTCAACTTTGATC 57.164 40.909 0.00 0.00 37.00 2.92
226 227 6.240894 TCTATTCCTGTGCTTCAACTTTGAT 58.759 36.000 0.00 0.00 37.00 2.57
227 228 5.620206 TCTATTCCTGTGCTTCAACTTTGA 58.380 37.500 0.00 0.00 34.92 2.69
228 229 5.106396 CCTCTATTCCTGTGCTTCAACTTTG 60.106 44.000 0.00 0.00 0.00 2.77
229 230 5.006386 CCTCTATTCCTGTGCTTCAACTTT 58.994 41.667 0.00 0.00 0.00 2.66
230 231 4.287067 TCCTCTATTCCTGTGCTTCAACTT 59.713 41.667 0.00 0.00 0.00 2.66
231 232 3.840666 TCCTCTATTCCTGTGCTTCAACT 59.159 43.478 0.00 0.00 0.00 3.16
232 233 4.207891 TCCTCTATTCCTGTGCTTCAAC 57.792 45.455 0.00 0.00 0.00 3.18
233 234 4.836825 CTTCCTCTATTCCTGTGCTTCAA 58.163 43.478 0.00 0.00 0.00 2.69
234 235 3.369892 GCTTCCTCTATTCCTGTGCTTCA 60.370 47.826 0.00 0.00 0.00 3.02
235 236 3.202097 GCTTCCTCTATTCCTGTGCTTC 58.798 50.000 0.00 0.00 0.00 3.86
236 237 2.573462 TGCTTCCTCTATTCCTGTGCTT 59.427 45.455 0.00 0.00 0.00 3.91
237 238 2.191400 TGCTTCCTCTATTCCTGTGCT 58.809 47.619 0.00 0.00 0.00 4.40
238 239 2.698855 TGCTTCCTCTATTCCTGTGC 57.301 50.000 0.00 0.00 0.00 4.57
239 240 7.675062 AGTATAATGCTTCCTCTATTCCTGTG 58.325 38.462 0.00 0.00 0.00 3.66
240 241 7.038658 GGAGTATAATGCTTCCTCTATTCCTGT 60.039 40.741 0.00 0.00 0.00 4.00
241 242 7.327214 GGAGTATAATGCTTCCTCTATTCCTG 58.673 42.308 0.00 0.00 0.00 3.86
242 243 6.442244 GGGAGTATAATGCTTCCTCTATTCCT 59.558 42.308 0.00 0.00 0.00 3.36
243 244 6.442244 AGGGAGTATAATGCTTCCTCTATTCC 59.558 42.308 0.00 0.00 37.39 3.01
244 245 7.489239 AGGGAGTATAATGCTTCCTCTATTC 57.511 40.000 0.00 0.00 37.39 1.75
250 251 2.900546 CGGAGGGAGTATAATGCTTCCT 59.099 50.000 18.18 5.00 44.40 3.36
251 252 2.633481 ACGGAGGGAGTATAATGCTTCC 59.367 50.000 12.02 12.02 34.01 3.46
252 253 4.338379 AACGGAGGGAGTATAATGCTTC 57.662 45.455 0.00 0.00 0.00 3.86
253 254 4.772886 AAACGGAGGGAGTATAATGCTT 57.227 40.909 0.00 0.00 0.00 3.91
254 255 4.772886 AAAACGGAGGGAGTATAATGCT 57.227 40.909 0.00 0.00 0.00 3.79
255 256 7.506328 AATAAAAACGGAGGGAGTATAATGC 57.494 36.000 0.00 0.00 0.00 3.56
261 262 9.112725 GCTAATTAAATAAAAACGGAGGGAGTA 57.887 33.333 0.00 0.00 0.00 2.59
262 263 7.201670 CGCTAATTAAATAAAAACGGAGGGAGT 60.202 37.037 0.00 0.00 0.00 3.85
263 264 7.130269 CGCTAATTAAATAAAAACGGAGGGAG 58.870 38.462 0.00 0.00 0.00 4.30
264 265 6.598850 ACGCTAATTAAATAAAAACGGAGGGA 59.401 34.615 0.00 0.00 0.00 4.20
265 266 6.788243 ACGCTAATTAAATAAAAACGGAGGG 58.212 36.000 0.00 0.00 0.00 4.30
266 267 9.940166 AATACGCTAATTAAATAAAAACGGAGG 57.060 29.630 0.00 0.00 0.00 4.30
277 278 9.116067 TGACCAAAGCTAATACGCTAATTAAAT 57.884 29.630 0.00 0.00 39.86 1.40
278 279 8.495361 TGACCAAAGCTAATACGCTAATTAAA 57.505 30.769 0.00 0.00 39.86 1.52
279 280 8.495361 TTGACCAAAGCTAATACGCTAATTAA 57.505 30.769 0.00 0.00 39.86 1.40
280 281 8.495361 TTTGACCAAAGCTAATACGCTAATTA 57.505 30.769 0.00 0.00 39.86 1.40
281 282 6.995511 TTGACCAAAGCTAATACGCTAATT 57.004 33.333 0.00 0.00 39.86 1.40
282 283 6.995511 TTTGACCAAAGCTAATACGCTAAT 57.004 33.333 0.00 0.00 39.86 1.73
283 284 6.417191 CTTTGACCAAAGCTAATACGCTAA 57.583 37.500 9.25 0.00 40.94 3.09
285 286 4.946784 CTTTGACCAAAGCTAATACGCT 57.053 40.909 9.25 0.00 40.94 5.07
349 350 8.634444 GGTATTGGTTTGTTATTGTATATGCCA 58.366 33.333 0.00 0.00 0.00 4.92
350 351 8.634444 TGGTATTGGTTTGTTATTGTATATGCC 58.366 33.333 0.00 0.00 0.00 4.40
362 363 9.874205 CAATGAATCTAATGGTATTGGTTTGTT 57.126 29.630 0.00 0.00 0.00 2.83
363 364 9.034800 ACAATGAATCTAATGGTATTGGTTTGT 57.965 29.630 0.00 0.00 31.64 2.83
364 365 9.874205 AACAATGAATCTAATGGTATTGGTTTG 57.126 29.630 0.00 0.00 31.64 2.93
365 366 9.874205 CAACAATGAATCTAATGGTATTGGTTT 57.126 29.630 0.00 0.00 31.64 3.27
366 367 9.253832 TCAACAATGAATCTAATGGTATTGGTT 57.746 29.630 0.00 0.00 30.99 3.67
367 368 8.821686 TCAACAATGAATCTAATGGTATTGGT 57.178 30.769 0.00 0.00 30.99 3.67
445 446 9.856162 ACTTCCTAAAGTTTGACCAAGTTTATA 57.144 29.630 0.00 0.00 43.28 0.98
446 447 8.762481 ACTTCCTAAAGTTTGACCAAGTTTAT 57.238 30.769 0.00 0.00 43.28 1.40
461 462 6.331369 TGGCTGAAATCAAACTTCCTAAAG 57.669 37.500 0.00 0.00 38.54 1.85
462 463 6.323739 AGTTGGCTGAAATCAAACTTCCTAAA 59.676 34.615 0.00 0.00 0.00 1.85
463 464 5.833131 AGTTGGCTGAAATCAAACTTCCTAA 59.167 36.000 0.00 0.00 0.00 2.69
464 465 5.385198 AGTTGGCTGAAATCAAACTTCCTA 58.615 37.500 0.00 0.00 0.00 2.94
465 466 4.218312 AGTTGGCTGAAATCAAACTTCCT 58.782 39.130 0.00 0.00 0.00 3.36
466 467 4.279420 AGAGTTGGCTGAAATCAAACTTCC 59.721 41.667 1.69 0.00 30.70 3.46
467 468 5.444663 AGAGTTGGCTGAAATCAAACTTC 57.555 39.130 1.69 0.00 30.70 3.01
468 469 6.959639 TTAGAGTTGGCTGAAATCAAACTT 57.040 33.333 1.69 0.00 30.70 2.66
469 470 8.680903 CATATTAGAGTTGGCTGAAATCAAACT 58.319 33.333 0.00 0.00 30.70 2.66
470 471 7.433425 GCATATTAGAGTTGGCTGAAATCAAAC 59.567 37.037 0.00 0.00 30.70 2.93
471 472 7.483307 GCATATTAGAGTTGGCTGAAATCAAA 58.517 34.615 0.00 0.00 30.70 2.69
472 473 6.238456 CGCATATTAGAGTTGGCTGAAATCAA 60.238 38.462 0.00 0.00 30.70 2.57
473 474 5.237127 CGCATATTAGAGTTGGCTGAAATCA 59.763 40.000 0.00 0.00 30.70 2.57
474 475 5.334414 CCGCATATTAGAGTTGGCTGAAATC 60.334 44.000 0.00 0.00 0.00 2.17
475 476 4.516698 CCGCATATTAGAGTTGGCTGAAAT 59.483 41.667 0.00 0.00 0.00 2.17
476 477 3.876914 CCGCATATTAGAGTTGGCTGAAA 59.123 43.478 0.00 0.00 0.00 2.69
477 478 3.133901 TCCGCATATTAGAGTTGGCTGAA 59.866 43.478 0.00 0.00 0.00 3.02
478 479 2.698274 TCCGCATATTAGAGTTGGCTGA 59.302 45.455 0.00 0.00 0.00 4.26
479 480 3.062763 CTCCGCATATTAGAGTTGGCTG 58.937 50.000 0.00 0.00 0.00 4.85
480 481 2.700897 ACTCCGCATATTAGAGTTGGCT 59.299 45.455 0.00 0.00 37.60 4.75
481 482 3.113260 ACTCCGCATATTAGAGTTGGC 57.887 47.619 0.00 0.00 37.60 4.52
482 483 8.827177 TTATTTACTCCGCATATTAGAGTTGG 57.173 34.615 4.78 0.00 41.09 3.77
486 487 9.793245 CGTTTTTATTTACTCCGCATATTAGAG 57.207 33.333 0.00 0.00 0.00 2.43
487 488 8.767085 CCGTTTTTATTTACTCCGCATATTAGA 58.233 33.333 0.00 0.00 0.00 2.10
488 489 8.767085 TCCGTTTTTATTTACTCCGCATATTAG 58.233 33.333 0.00 0.00 0.00 1.73
489 490 8.659925 TCCGTTTTTATTTACTCCGCATATTA 57.340 30.769 0.00 0.00 0.00 0.98
490 491 7.255001 CCTCCGTTTTTATTTACTCCGCATATT 60.255 37.037 0.00 0.00 0.00 1.28
491 492 6.204108 CCTCCGTTTTTATTTACTCCGCATAT 59.796 38.462 0.00 0.00 0.00 1.78
492 493 5.524646 CCTCCGTTTTTATTTACTCCGCATA 59.475 40.000 0.00 0.00 0.00 3.14
493 494 4.334481 CCTCCGTTTTTATTTACTCCGCAT 59.666 41.667 0.00 0.00 0.00 4.73
494 495 3.685756 CCTCCGTTTTTATTTACTCCGCA 59.314 43.478 0.00 0.00 0.00 5.69
495 496 3.064408 CCCTCCGTTTTTATTTACTCCGC 59.936 47.826 0.00 0.00 0.00 5.54
496 497 4.506758 TCCCTCCGTTTTTATTTACTCCG 58.493 43.478 0.00 0.00 0.00 4.63
497 498 5.494724 ACTCCCTCCGTTTTTATTTACTCC 58.505 41.667 0.00 0.00 0.00 3.85
498 499 5.583854 GGACTCCCTCCGTTTTTATTTACTC 59.416 44.000 0.00 0.00 0.00 2.59
499 500 5.013391 TGGACTCCCTCCGTTTTTATTTACT 59.987 40.000 0.00 0.00 43.03 2.24
500 501 5.247862 TGGACTCCCTCCGTTTTTATTTAC 58.752 41.667 0.00 0.00 43.03 2.01
501 502 5.502089 TGGACTCCCTCCGTTTTTATTTA 57.498 39.130 0.00 0.00 43.03 1.40
502 503 4.376225 TGGACTCCCTCCGTTTTTATTT 57.624 40.909 0.00 0.00 43.03 1.40
503 504 4.227527 AGATGGACTCCCTCCGTTTTTATT 59.772 41.667 0.00 0.00 43.03 1.40
504 505 3.780850 AGATGGACTCCCTCCGTTTTTAT 59.219 43.478 0.00 0.00 43.03 1.40
505 506 3.055385 CAGATGGACTCCCTCCGTTTTTA 60.055 47.826 0.00 0.00 43.03 1.52
506 507 1.985895 AGATGGACTCCCTCCGTTTTT 59.014 47.619 0.00 0.00 43.03 1.94
507 508 1.279271 CAGATGGACTCCCTCCGTTTT 59.721 52.381 0.00 0.00 43.03 2.43
508 509 0.905357 CAGATGGACTCCCTCCGTTT 59.095 55.000 0.00 0.00 43.03 3.60
509 510 0.041238 TCAGATGGACTCCCTCCGTT 59.959 55.000 0.00 0.00 43.03 4.44
510 511 0.041238 TTCAGATGGACTCCCTCCGT 59.959 55.000 0.00 0.00 43.03 4.69
511 512 0.461961 GTTCAGATGGACTCCCTCCG 59.538 60.000 0.00 0.00 43.03 4.63
512 513 0.461961 CGTTCAGATGGACTCCCTCC 59.538 60.000 0.00 0.00 39.97 4.30
513 514 0.461961 CCGTTCAGATGGACTCCCTC 59.538 60.000 0.00 0.00 33.44 4.30
514 515 0.978146 CCCGTTCAGATGGACTCCCT 60.978 60.000 0.00 0.00 33.44 4.20
515 516 1.522569 CCCGTTCAGATGGACTCCC 59.477 63.158 0.00 0.00 33.44 4.30
516 517 1.153349 GCCCGTTCAGATGGACTCC 60.153 63.158 0.00 0.00 33.44 3.85
517 518 0.179097 GAGCCCGTTCAGATGGACTC 60.179 60.000 0.00 0.00 34.81 3.36
518 519 0.904865 TGAGCCCGTTCAGATGGACT 60.905 55.000 0.00 0.00 33.44 3.85
519 520 0.741221 GTGAGCCCGTTCAGATGGAC 60.741 60.000 0.00 0.00 33.44 4.02
623 624 0.599204 TCAACACTCCCGACGAAAGC 60.599 55.000 0.00 0.00 0.00 3.51
660 684 3.809832 CACCGGGAAATAGAATAGCTGTG 59.190 47.826 6.32 0.00 0.00 3.66
677 701 9.284594 CATTGTTTTATCATTTAACTACACCGG 57.715 33.333 0.00 0.00 0.00 5.28
717 741 2.288666 TCTTGGTCAGACAGTTTGTGC 58.711 47.619 2.17 0.00 0.00 4.57
722 746 5.794894 ACGAATAATCTTGGTCAGACAGTT 58.205 37.500 2.17 0.00 32.83 3.16
749 778 6.321690 ACACCGAGAAATAGAATAGCTGTACT 59.678 38.462 0.00 0.00 0.00 2.73
750 779 6.505272 ACACCGAGAAATAGAATAGCTGTAC 58.495 40.000 0.00 0.00 0.00 2.90
751 780 6.710597 ACACCGAGAAATAGAATAGCTGTA 57.289 37.500 0.00 0.00 0.00 2.74
767 796 8.697846 TTGTCTTATCATTTAACTACACCGAG 57.302 34.615 0.00 0.00 0.00 4.63
868 900 2.825836 GCATTCCAGGCGACCAGG 60.826 66.667 1.65 1.65 0.00 4.45
885 917 2.398252 ATGGATGCCAGCTATGATCG 57.602 50.000 0.00 0.00 36.75 3.69
922 954 7.461749 TGGAGGAGTAAGATTGATTCAAACTT 58.538 34.615 21.08 21.08 39.24 2.66
929 961 7.092264 TGGAGAATTGGAGGAGTAAGATTGATT 60.092 37.037 0.00 0.00 0.00 2.57
965 997 2.576648 AGGAAATGAACAGGGGTACTCC 59.423 50.000 2.47 2.47 0.00 3.85
966 998 4.019231 AGAAGGAAATGAACAGGGGTACTC 60.019 45.833 0.00 0.00 0.00 2.59
967 999 3.916989 AGAAGGAAATGAACAGGGGTACT 59.083 43.478 0.00 0.00 0.00 2.73
968 1000 4.302559 AGAAGGAAATGAACAGGGGTAC 57.697 45.455 0.00 0.00 0.00 3.34
969 1001 4.564821 CGAAGAAGGAAATGAACAGGGGTA 60.565 45.833 0.00 0.00 0.00 3.69
970 1002 3.767711 GAAGAAGGAAATGAACAGGGGT 58.232 45.455 0.00 0.00 0.00 4.95
971 1003 2.749621 CGAAGAAGGAAATGAACAGGGG 59.250 50.000 0.00 0.00 0.00 4.79
992 1024 1.134551 GGAGGAGAGTCATTGTGAGCC 60.135 57.143 0.00 0.00 0.00 4.70
998 1030 4.440880 GAAGACATGGAGGAGAGTCATTG 58.559 47.826 0.00 0.00 33.56 2.82
1218 1262 2.568090 GCAGACCAAACCGGCATG 59.432 61.111 0.00 0.00 39.03 4.06
1349 1393 0.968405 GGTTGTGACATTGGCATGGT 59.032 50.000 0.00 0.00 34.27 3.55
1350 1394 0.967662 TGGTTGTGACATTGGCATGG 59.032 50.000 0.00 0.00 34.27 3.66
1351 1395 2.406130 GTTGGTTGTGACATTGGCATG 58.594 47.619 0.00 0.00 36.34 4.06
1352 1396 1.000385 CGTTGGTTGTGACATTGGCAT 60.000 47.619 0.00 0.00 0.00 4.40
1353 1397 0.383590 CGTTGGTTGTGACATTGGCA 59.616 50.000 0.00 0.00 0.00 4.92
1354 1398 0.665835 TCGTTGGTTGTGACATTGGC 59.334 50.000 0.00 0.00 0.00 4.52
1698 1742 5.689961 AGTGTTTATGAACGTGAAATTTGGC 59.310 36.000 0.00 0.00 38.65 4.52
1710 1754 6.650807 TGGACTCATTCTCAGTGTTTATGAAC 59.349 38.462 0.00 0.00 36.29 3.18
1908 1952 5.523188 GCAGAGTGGATCTACATTTTCTCTG 59.477 44.000 12.16 14.08 45.63 3.35
1919 1963 0.463204 GCAGCTGCAGAGTGGATCTA 59.537 55.000 33.36 0.00 41.59 1.98
2057 2101 0.759959 TTGCACGGGGTAGAACTTCA 59.240 50.000 0.00 0.00 0.00 3.02
2058 2102 1.439679 CTTGCACGGGGTAGAACTTC 58.560 55.000 0.00 0.00 0.00 3.01
2124 2171 1.811266 CCGTTGGCAGTCATCTCCG 60.811 63.158 0.00 0.00 0.00 4.63
2208 2255 7.435488 TGTTGTTTTACATTGTACAATTTCCCG 59.565 33.333 18.50 9.54 33.57 5.14
2265 2312 1.069906 GCAAGGCGGATATAAAGCGTG 60.070 52.381 0.00 0.00 0.00 5.34
2315 2362 5.045286 AGGTTGATTCCACTCTGCTTCTTAT 60.045 40.000 0.00 0.00 0.00 1.73
2367 2414 1.673665 CACCAGGACAAGAGCAGCC 60.674 63.158 0.00 0.00 0.00 4.85
3104 3172 4.524802 AAGGCTGAATAATCACCATCCA 57.475 40.909 0.00 0.00 32.44 3.41
3499 3573 3.245519 GTCCAGAACGAGTTTGAGTCAAC 59.754 47.826 4.68 1.30 0.00 3.18
3565 3652 2.158549 AGGCAAGAAAGCAGGAAGACTT 60.159 45.455 0.00 0.00 35.83 3.01
3682 3770 5.695816 CCAGGAATGCGAAAAGAAATGAAAA 59.304 36.000 0.00 0.00 0.00 2.29
3683 3771 5.229423 CCAGGAATGCGAAAAGAAATGAAA 58.771 37.500 0.00 0.00 0.00 2.69
3684 3772 4.321899 CCCAGGAATGCGAAAAGAAATGAA 60.322 41.667 0.00 0.00 0.00 2.57
3685 3773 3.193267 CCCAGGAATGCGAAAAGAAATGA 59.807 43.478 0.00 0.00 0.00 2.57
3686 3774 3.514645 CCCAGGAATGCGAAAAGAAATG 58.485 45.455 0.00 0.00 0.00 2.32
3687 3775 2.497273 CCCCAGGAATGCGAAAAGAAAT 59.503 45.455 0.00 0.00 0.00 2.17
3688 3776 1.892474 CCCCAGGAATGCGAAAAGAAA 59.108 47.619 0.00 0.00 0.00 2.52
3715 3804 6.258068 GCCTTGTAGGAGTACATACAACATTC 59.742 42.308 11.91 0.00 44.49 2.67
3799 3910 1.156736 GCCGTTCAGTGTAATGTGCT 58.843 50.000 0.00 0.00 0.00 4.40
3862 3973 5.442391 TGAGCTTTAGTGGGTAGTTTGTTT 58.558 37.500 0.00 0.00 0.00 2.83
3878 3989 5.900123 ACCACTACTGGATACTATGAGCTTT 59.100 40.000 0.00 0.00 40.55 3.51
3930 4042 2.695666 TCTCCTACATGTAAGAGGCAGC 59.304 50.000 24.72 0.00 0.00 5.25
3962 4074 7.092354 TGGGTTAGGGTTCAGTTATAATGCTAA 60.092 37.037 0.00 0.00 0.00 3.09
4048 4161 4.627467 GTGCGATTTTCTCTGATGTACACT 59.373 41.667 0.00 0.00 0.00 3.55
4113 4226 1.276421 CAACAGACGAATCCCCAGACT 59.724 52.381 0.00 0.00 0.00 3.24
4313 4426 1.907255 GGAGTAGTTGGGTGTTAGCCT 59.093 52.381 0.00 0.00 36.53 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.