Multiple sequence alignment - TraesCS2B01G554700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G554700 | chr2B | 100.000 | 4500 | 0 | 0 | 1 | 4500 | 749799569 | 749804068 | 0.000000e+00 | 8311.0 |
1 | TraesCS2B01G554700 | chr2B | 75.590 | 848 | 185 | 17 | 2476 | 3309 | 117992690 | 117991851 | 2.520000e-107 | 399.0 |
2 | TraesCS2B01G554700 | chr2B | 74.945 | 910 | 205 | 21 | 2450 | 3343 | 9145179 | 9146081 | 3.260000e-106 | 396.0 |
3 | TraesCS2B01G554700 | chr2B | 92.308 | 260 | 20 | 0 | 262 | 521 | 198355841 | 198356100 | 1.980000e-98 | 370.0 |
4 | TraesCS2B01G554700 | chr2B | 72.386 | 880 | 211 | 28 | 2488 | 3348 | 4752725 | 4751859 | 2.690000e-62 | 250.0 |
5 | TraesCS2B01G554700 | chr2B | 80.851 | 141 | 22 | 4 | 3634 | 3773 | 630135494 | 630135358 | 6.160000e-19 | 106.0 |
6 | TraesCS2B01G554700 | chr2B | 79.710 | 138 | 28 | 0 | 3173 | 3310 | 729768906 | 729769043 | 2.860000e-17 | 100.0 |
7 | TraesCS2B01G554700 | chr2D | 94.888 | 3971 | 95 | 26 | 521 | 4450 | 615380993 | 615384896 | 0.000000e+00 | 6109.0 |
8 | TraesCS2B01G554700 | chr2D | 92.992 | 371 | 8 | 3 | 4130 | 4494 | 615387953 | 615388311 | 3.990000e-145 | 525.0 |
9 | TraesCS2B01G554700 | chr2D | 75.469 | 852 | 179 | 24 | 2476 | 3309 | 76752468 | 76751629 | 5.460000e-104 | 388.0 |
10 | TraesCS2B01G554700 | chr2D | 72.422 | 892 | 216 | 27 | 2475 | 3348 | 380688892 | 380688013 | 1.610000e-64 | 257.0 |
11 | TraesCS2B01G554700 | chr2D | 72.480 | 883 | 205 | 34 | 2488 | 3348 | 8347359 | 8346493 | 2.690000e-62 | 250.0 |
12 | TraesCS2B01G554700 | chr2D | 86.792 | 212 | 26 | 2 | 53 | 263 | 537518192 | 537518402 | 7.530000e-58 | 235.0 |
13 | TraesCS2B01G554700 | chr2D | 82.843 | 204 | 23 | 8 | 3634 | 3836 | 530258554 | 530258362 | 5.980000e-39 | 172.0 |
14 | TraesCS2B01G554700 | chr2D | 93.333 | 75 | 5 | 0 | 745 | 819 | 615381148 | 615381222 | 1.320000e-20 | 111.0 |
15 | TraesCS2B01G554700 | chr2D | 79.710 | 138 | 28 | 0 | 3173 | 3310 | 599928736 | 599928873 | 2.860000e-17 | 100.0 |
16 | TraesCS2B01G554700 | chr2D | 100.000 | 35 | 0 | 0 | 4466 | 4500 | 615384881 | 615384915 | 1.040000e-06 | 65.8 |
17 | TraesCS2B01G554700 | chr2A | 95.963 | 3765 | 97 | 17 | 745 | 4500 | 745389919 | 745393637 | 0.000000e+00 | 6059.0 |
18 | TraesCS2B01G554700 | chr2A | 90.406 | 271 | 25 | 1 | 258 | 528 | 766580737 | 766580468 | 5.540000e-94 | 355.0 |
19 | TraesCS2B01G554700 | chr2A | 93.562 | 233 | 15 | 0 | 4025 | 4257 | 745395750 | 745395982 | 9.260000e-92 | 348.0 |
20 | TraesCS2B01G554700 | chr2A | 83.230 | 322 | 41 | 12 | 4187 | 4500 | 700084649 | 700084333 | 2.650000e-72 | 283.0 |
21 | TraesCS2B01G554700 | chr2A | 81.931 | 321 | 41 | 14 | 4187 | 4495 | 700090170 | 700089855 | 5.780000e-64 | 255.0 |
22 | TraesCS2B01G554700 | chr2A | 89.252 | 214 | 9 | 5 | 527 | 726 | 745389781 | 745389994 | 5.780000e-64 | 255.0 |
23 | TraesCS2B01G554700 | chr2A | 74.326 | 631 | 133 | 23 | 2486 | 3094 | 733630499 | 733631122 | 1.620000e-59 | 241.0 |
24 | TraesCS2B01G554700 | chr2A | 95.349 | 129 | 5 | 1 | 4372 | 4500 | 745396036 | 745396163 | 2.120000e-48 | 204.0 |
25 | TraesCS2B01G554700 | chr2A | 81.250 | 96 | 8 | 6 | 3758 | 3845 | 675735721 | 675735628 | 8.080000e-08 | 69.4 |
26 | TraesCS2B01G554700 | chr7B | 75.231 | 864 | 177 | 30 | 2476 | 3319 | 604099313 | 604098467 | 4.250000e-100 | 375.0 |
27 | TraesCS2B01G554700 | chr7B | 89.552 | 67 | 4 | 3 | 3434 | 3499 | 68533811 | 68533875 | 1.040000e-11 | 82.4 |
28 | TraesCS2B01G554700 | chr1A | 92.692 | 260 | 19 | 0 | 262 | 521 | 169651930 | 169652189 | 4.250000e-100 | 375.0 |
29 | TraesCS2B01G554700 | chr1A | 90.909 | 264 | 24 | 0 | 262 | 525 | 510614375 | 510614638 | 5.540000e-94 | 355.0 |
30 | TraesCS2B01G554700 | chr4D | 92.045 | 264 | 20 | 1 | 259 | 521 | 444245119 | 444245382 | 1.980000e-98 | 370.0 |
31 | TraesCS2B01G554700 | chr4D | 83.691 | 233 | 16 | 16 | 3498 | 3726 | 47286577 | 47286791 | 2.750000e-47 | 200.0 |
32 | TraesCS2B01G554700 | chr4D | 81.124 | 249 | 25 | 11 | 3792 | 4038 | 47288384 | 47288612 | 3.580000e-41 | 180.0 |
33 | TraesCS2B01G554700 | chr4D | 92.424 | 66 | 5 | 0 | 3434 | 3499 | 464534072 | 464534007 | 1.330000e-15 | 95.3 |
34 | TraesCS2B01G554700 | chr6A | 90.876 | 274 | 23 | 2 | 259 | 531 | 505243325 | 505243597 | 2.560000e-97 | 366.0 |
35 | TraesCS2B01G554700 | chr3B | 91.603 | 262 | 20 | 1 | 260 | 521 | 737938151 | 737938410 | 1.190000e-95 | 361.0 |
36 | TraesCS2B01G554700 | chr3B | 86.256 | 211 | 24 | 5 | 56 | 263 | 495478028 | 495477820 | 1.630000e-54 | 224.0 |
37 | TraesCS2B01G554700 | chr6D | 91.860 | 258 | 19 | 1 | 262 | 519 | 438891957 | 438891702 | 4.280000e-95 | 359.0 |
38 | TraesCS2B01G554700 | chr6D | 78.136 | 279 | 39 | 12 | 4158 | 4428 | 56057871 | 56057607 | 1.680000e-34 | 158.0 |
39 | TraesCS2B01G554700 | chr4A | 91.221 | 262 | 21 | 2 | 261 | 521 | 674617055 | 674616795 | 5.540000e-94 | 355.0 |
40 | TraesCS2B01G554700 | chr4A | 79.789 | 569 | 49 | 18 | 3501 | 4040 | 551216027 | 551215496 | 1.990000e-93 | 353.0 |
41 | TraesCS2B01G554700 | chr4A | 74.157 | 623 | 155 | 6 | 2475 | 3094 | 738515574 | 738516193 | 2.080000e-63 | 254.0 |
42 | TraesCS2B01G554700 | chr4B | 80.577 | 520 | 48 | 17 | 3544 | 4040 | 68895131 | 68895620 | 7.160000e-93 | 351.0 |
43 | TraesCS2B01G554700 | chr4B | 81.412 | 425 | 36 | 12 | 3544 | 3948 | 68669944 | 68670345 | 1.570000e-79 | 307.0 |
44 | TraesCS2B01G554700 | chr4B | 87.879 | 66 | 6 | 2 | 3434 | 3498 | 479394683 | 479394747 | 4.830000e-10 | 76.8 |
45 | TraesCS2B01G554700 | chr7D | 74.634 | 820 | 184 | 21 | 2475 | 3279 | 543562145 | 543561335 | 1.550000e-89 | 340.0 |
46 | TraesCS2B01G554700 | chr7D | 74.276 | 863 | 187 | 28 | 2476 | 3319 | 556718100 | 556717254 | 9.330000e-87 | 331.0 |
47 | TraesCS2B01G554700 | chr7D | 85.990 | 207 | 29 | 0 | 57 | 263 | 121514051 | 121514257 | 5.860000e-54 | 222.0 |
48 | TraesCS2B01G554700 | chrUn | 74.087 | 876 | 197 | 25 | 2452 | 3309 | 365695993 | 365695130 | 2.590000e-87 | 333.0 |
49 | TraesCS2B01G554700 | chr5A | 83.540 | 322 | 38 | 13 | 4187 | 4500 | 474451351 | 474451665 | 2.050000e-73 | 287.0 |
50 | TraesCS2B01G554700 | chr5D | 86.547 | 223 | 29 | 1 | 41 | 263 | 544214101 | 544214322 | 1.250000e-60 | 244.0 |
51 | TraesCS2B01G554700 | chr3D | 85.648 | 216 | 25 | 5 | 53 | 263 | 123619499 | 123619713 | 5.860000e-54 | 222.0 |
52 | TraesCS2B01G554700 | chr3D | 85.068 | 221 | 25 | 6 | 41 | 258 | 482343566 | 482343781 | 7.580000e-53 | 219.0 |
53 | TraesCS2B01G554700 | chr3D | 82.659 | 173 | 25 | 4 | 4330 | 4500 | 433298300 | 433298131 | 1.010000e-31 | 148.0 |
54 | TraesCS2B01G554700 | chr3D | 89.552 | 67 | 5 | 2 | 3434 | 3499 | 121211814 | 121211879 | 2.880000e-12 | 84.2 |
55 | TraesCS2B01G554700 | chr3D | 86.364 | 66 | 7 | 2 | 3434 | 3498 | 361694069 | 361694005 | 2.250000e-08 | 71.3 |
56 | TraesCS2B01G554700 | chr3D | 85.294 | 68 | 6 | 4 | 3434 | 3499 | 362049657 | 362049592 | 2.910000e-07 | 67.6 |
57 | TraesCS2B01G554700 | chr1B | 85.990 | 207 | 29 | 0 | 57 | 263 | 488818848 | 488819054 | 5.860000e-54 | 222.0 |
58 | TraesCS2B01G554700 | chr6B | 84.000 | 225 | 34 | 2 | 39 | 263 | 507910827 | 507910605 | 9.800000e-52 | 215.0 |
59 | TraesCS2B01G554700 | chr7A | 82.305 | 243 | 37 | 6 | 20 | 261 | 428818317 | 428818080 | 5.900000e-49 | 206.0 |
60 | TraesCS2B01G554700 | chr7A | 80.000 | 285 | 43 | 10 | 4158 | 4435 | 734621593 | 734621316 | 9.870000e-47 | 198.0 |
61 | TraesCS2B01G554700 | chr7A | 86.567 | 67 | 7 | 2 | 3434 | 3499 | 675187496 | 675187561 | 6.240000e-09 | 73.1 |
62 | TraesCS2B01G554700 | chr3A | 80.292 | 274 | 39 | 11 | 4158 | 4423 | 7360954 | 7361220 | 4.590000e-45 | 193.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G554700 | chr2B | 749799569 | 749804068 | 4499 | False | 8311.0 | 8311 | 100.00000 | 1 | 4500 | 1 | chr2B.!!$F4 | 4499 |
1 | TraesCS2B01G554700 | chr2B | 117991851 | 117992690 | 839 | True | 399.0 | 399 | 75.59000 | 2476 | 3309 | 1 | chr2B.!!$R2 | 833 |
2 | TraesCS2B01G554700 | chr2B | 9145179 | 9146081 | 902 | False | 396.0 | 396 | 74.94500 | 2450 | 3343 | 1 | chr2B.!!$F1 | 893 |
3 | TraesCS2B01G554700 | chr2B | 4751859 | 4752725 | 866 | True | 250.0 | 250 | 72.38600 | 2488 | 3348 | 1 | chr2B.!!$R1 | 860 |
4 | TraesCS2B01G554700 | chr2D | 615380993 | 615388311 | 7318 | False | 1702.7 | 6109 | 95.30325 | 521 | 4500 | 4 | chr2D.!!$F3 | 3979 |
5 | TraesCS2B01G554700 | chr2D | 76751629 | 76752468 | 839 | True | 388.0 | 388 | 75.46900 | 2476 | 3309 | 1 | chr2D.!!$R2 | 833 |
6 | TraesCS2B01G554700 | chr2D | 380688013 | 380688892 | 879 | True | 257.0 | 257 | 72.42200 | 2475 | 3348 | 1 | chr2D.!!$R3 | 873 |
7 | TraesCS2B01G554700 | chr2D | 8346493 | 8347359 | 866 | True | 250.0 | 250 | 72.48000 | 2488 | 3348 | 1 | chr2D.!!$R1 | 860 |
8 | TraesCS2B01G554700 | chr2A | 745389781 | 745396163 | 6382 | False | 1716.5 | 6059 | 93.53150 | 527 | 4500 | 4 | chr2A.!!$F2 | 3973 |
9 | TraesCS2B01G554700 | chr2A | 733630499 | 733631122 | 623 | False | 241.0 | 241 | 74.32600 | 2486 | 3094 | 1 | chr2A.!!$F1 | 608 |
10 | TraesCS2B01G554700 | chr7B | 604098467 | 604099313 | 846 | True | 375.0 | 375 | 75.23100 | 2476 | 3319 | 1 | chr7B.!!$R1 | 843 |
11 | TraesCS2B01G554700 | chr4A | 551215496 | 551216027 | 531 | True | 353.0 | 353 | 79.78900 | 3501 | 4040 | 1 | chr4A.!!$R1 | 539 |
12 | TraesCS2B01G554700 | chr4A | 738515574 | 738516193 | 619 | False | 254.0 | 254 | 74.15700 | 2475 | 3094 | 1 | chr4A.!!$F1 | 619 |
13 | TraesCS2B01G554700 | chr7D | 543561335 | 543562145 | 810 | True | 340.0 | 340 | 74.63400 | 2475 | 3279 | 1 | chr7D.!!$R1 | 804 |
14 | TraesCS2B01G554700 | chr7D | 556717254 | 556718100 | 846 | True | 331.0 | 331 | 74.27600 | 2476 | 3319 | 1 | chr7D.!!$R2 | 843 |
15 | TraesCS2B01G554700 | chrUn | 365695130 | 365695993 | 863 | True | 333.0 | 333 | 74.08700 | 2452 | 3309 | 1 | chrUn.!!$R1 | 857 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
130 | 131 | 0.035317 | ACAAGATCAACTGCGGCAGA | 59.965 | 50.0 | 34.70 | 14.79 | 35.18 | 4.26 | F |
966 | 998 | 0.108329 | AATTCTCCACCACGCGTAGG | 60.108 | 55.0 | 13.44 | 18.52 | 0.00 | 3.18 | F |
1710 | 1754 | 0.109781 | CCCTGACGCCAAATTTCACG | 60.110 | 55.0 | 7.61 | 7.61 | 0.00 | 4.35 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1353 | 1397 | 0.383590 | CGTTGGTTGTGACATTGGCA | 59.616 | 50.000 | 0.00 | 0.0 | 0.00 | 4.92 | R |
1919 | 1963 | 0.463204 | GCAGCTGCAGAGTGGATCTA | 59.537 | 55.000 | 33.36 | 0.0 | 41.59 | 1.98 | R |
3688 | 3776 | 1.892474 | CCCCAGGAATGCGAAAAGAAA | 59.108 | 47.619 | 0.00 | 0.0 | 0.00 | 2.52 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
24 | 25 | 4.367039 | TCCTTCTTGGACTACCTTTTGG | 57.633 | 45.455 | 0.00 | 0.00 | 42.44 | 3.28 |
25 | 26 | 2.820197 | CCTTCTTGGACTACCTTTTGGC | 59.180 | 50.000 | 0.00 | 0.00 | 40.17 | 4.52 |
26 | 27 | 3.498661 | CCTTCTTGGACTACCTTTTGGCT | 60.499 | 47.826 | 0.00 | 0.00 | 40.17 | 4.75 |
27 | 28 | 3.140325 | TCTTGGACTACCTTTTGGCTG | 57.860 | 47.619 | 0.00 | 0.00 | 45.59 | 4.85 |
28 | 29 | 2.162681 | CTTGGACTACCTTTTGGCTGG | 58.837 | 52.381 | 0.00 | 0.00 | 45.59 | 4.85 |
29 | 30 | 1.440618 | TGGACTACCTTTTGGCTGGA | 58.559 | 50.000 | 0.00 | 0.00 | 45.59 | 3.86 |
30 | 31 | 1.073284 | TGGACTACCTTTTGGCTGGAC | 59.927 | 52.381 | 0.00 | 0.00 | 45.59 | 4.02 |
31 | 32 | 1.351350 | GGACTACCTTTTGGCTGGACT | 59.649 | 52.381 | 0.00 | 0.00 | 45.59 | 3.85 |
32 | 33 | 2.427506 | GACTACCTTTTGGCTGGACTG | 58.572 | 52.381 | 0.00 | 0.00 | 45.59 | 3.51 |
33 | 34 | 1.073923 | ACTACCTTTTGGCTGGACTGG | 59.926 | 52.381 | 0.00 | 0.00 | 45.59 | 4.00 |
34 | 35 | 1.351017 | CTACCTTTTGGCTGGACTGGA | 59.649 | 52.381 | 0.00 | 0.00 | 45.59 | 3.86 |
35 | 36 | 0.111253 | ACCTTTTGGCTGGACTGGAG | 59.889 | 55.000 | 0.00 | 0.00 | 45.59 | 3.86 |
36 | 37 | 1.246737 | CCTTTTGGCTGGACTGGAGC | 61.247 | 60.000 | 0.00 | 0.00 | 35.57 | 4.70 |
37 | 38 | 0.538057 | CTTTTGGCTGGACTGGAGCA | 60.538 | 55.000 | 0.00 | 0.00 | 38.27 | 4.26 |
38 | 39 | 0.112995 | TTTTGGCTGGACTGGAGCAT | 59.887 | 50.000 | 0.00 | 0.00 | 38.27 | 3.79 |
39 | 40 | 0.609957 | TTTGGCTGGACTGGAGCATG | 60.610 | 55.000 | 0.00 | 0.00 | 38.27 | 4.06 |
40 | 41 | 1.782201 | TTGGCTGGACTGGAGCATGT | 61.782 | 55.000 | 0.00 | 0.00 | 38.27 | 3.21 |
41 | 42 | 0.909133 | TGGCTGGACTGGAGCATGTA | 60.909 | 55.000 | 0.00 | 0.00 | 38.27 | 2.29 |
42 | 43 | 0.462759 | GGCTGGACTGGAGCATGTAC | 60.463 | 60.000 | 0.00 | 0.00 | 38.27 | 2.90 |
43 | 44 | 0.539051 | GCTGGACTGGAGCATGTACT | 59.461 | 55.000 | 0.00 | 0.00 | 36.40 | 2.73 |
44 | 45 | 1.472376 | GCTGGACTGGAGCATGTACTC | 60.472 | 57.143 | 0.00 | 0.00 | 36.40 | 2.59 |
45 | 46 | 2.106566 | CTGGACTGGAGCATGTACTCT | 58.893 | 52.381 | 0.00 | 0.00 | 36.87 | 3.24 |
46 | 47 | 2.100584 | CTGGACTGGAGCATGTACTCTC | 59.899 | 54.545 | 0.00 | 0.00 | 36.87 | 3.20 |
47 | 48 | 2.291865 | TGGACTGGAGCATGTACTCTCT | 60.292 | 50.000 | 0.00 | 0.00 | 36.87 | 3.10 |
48 | 49 | 2.763448 | GGACTGGAGCATGTACTCTCTT | 59.237 | 50.000 | 0.00 | 0.00 | 36.87 | 2.85 |
49 | 50 | 3.196685 | GGACTGGAGCATGTACTCTCTTT | 59.803 | 47.826 | 0.00 | 0.00 | 36.87 | 2.52 |
50 | 51 | 4.429108 | GACTGGAGCATGTACTCTCTTTC | 58.571 | 47.826 | 0.00 | 0.00 | 36.87 | 2.62 |
51 | 52 | 3.119316 | ACTGGAGCATGTACTCTCTTTCG | 60.119 | 47.826 | 0.00 | 0.00 | 36.87 | 3.46 |
52 | 53 | 2.826128 | TGGAGCATGTACTCTCTTTCGT | 59.174 | 45.455 | 0.00 | 0.00 | 36.87 | 3.85 |
53 | 54 | 3.258372 | TGGAGCATGTACTCTCTTTCGTT | 59.742 | 43.478 | 0.00 | 0.00 | 36.87 | 3.85 |
54 | 55 | 4.246458 | GGAGCATGTACTCTCTTTCGTTT | 58.754 | 43.478 | 0.00 | 0.00 | 36.87 | 3.60 |
55 | 56 | 4.691216 | GGAGCATGTACTCTCTTTCGTTTT | 59.309 | 41.667 | 0.00 | 0.00 | 36.87 | 2.43 |
56 | 57 | 5.867716 | GGAGCATGTACTCTCTTTCGTTTTA | 59.132 | 40.000 | 0.00 | 0.00 | 36.87 | 1.52 |
57 | 58 | 6.367969 | GGAGCATGTACTCTCTTTCGTTTTAA | 59.632 | 38.462 | 0.00 | 0.00 | 36.87 | 1.52 |
58 | 59 | 7.095355 | GGAGCATGTACTCTCTTTCGTTTTAAA | 60.095 | 37.037 | 0.00 | 0.00 | 36.87 | 1.52 |
59 | 60 | 8.149973 | AGCATGTACTCTCTTTCGTTTTAAAA | 57.850 | 30.769 | 0.00 | 0.00 | 0.00 | 1.52 |
60 | 61 | 8.784043 | AGCATGTACTCTCTTTCGTTTTAAAAT | 58.216 | 29.630 | 3.52 | 0.00 | 0.00 | 1.82 |
72 | 73 | 9.820229 | CTTTCGTTTTAAAATATAGTGTGCTCA | 57.180 | 29.630 | 3.52 | 0.00 | 0.00 | 4.26 |
73 | 74 | 9.601971 | TTTCGTTTTAAAATATAGTGTGCTCAC | 57.398 | 29.630 | 10.92 | 10.92 | 44.15 | 3.51 |
83 | 84 | 2.863658 | GTGTGCTCACGCTTTCTAAG | 57.136 | 50.000 | 2.72 | 0.00 | 38.69 | 2.18 |
84 | 85 | 2.404215 | GTGTGCTCACGCTTTCTAAGA | 58.596 | 47.619 | 2.72 | 0.00 | 38.69 | 2.10 |
85 | 86 | 2.996621 | GTGTGCTCACGCTTTCTAAGAT | 59.003 | 45.455 | 2.72 | 0.00 | 38.69 | 2.40 |
86 | 87 | 3.433615 | GTGTGCTCACGCTTTCTAAGATT | 59.566 | 43.478 | 2.72 | 0.00 | 38.69 | 2.40 |
87 | 88 | 3.679980 | TGTGCTCACGCTTTCTAAGATTC | 59.320 | 43.478 | 0.00 | 0.00 | 36.97 | 2.52 |
88 | 89 | 3.679980 | GTGCTCACGCTTTCTAAGATTCA | 59.320 | 43.478 | 0.00 | 0.00 | 36.97 | 2.57 |
89 | 90 | 4.152402 | GTGCTCACGCTTTCTAAGATTCAA | 59.848 | 41.667 | 0.00 | 0.00 | 36.97 | 2.69 |
90 | 91 | 4.152402 | TGCTCACGCTTTCTAAGATTCAAC | 59.848 | 41.667 | 0.00 | 0.00 | 36.97 | 3.18 |
91 | 92 | 4.390297 | GCTCACGCTTTCTAAGATTCAACT | 59.610 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
92 | 93 | 5.106908 | GCTCACGCTTTCTAAGATTCAACTT | 60.107 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
93 | 94 | 6.566753 | GCTCACGCTTTCTAAGATTCAACTTT | 60.567 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
94 | 95 | 7.259290 | TCACGCTTTCTAAGATTCAACTTTT | 57.741 | 32.000 | 0.00 | 0.00 | 0.00 | 2.27 |
95 | 96 | 8.373048 | TCACGCTTTCTAAGATTCAACTTTTA | 57.627 | 30.769 | 0.00 | 0.00 | 0.00 | 1.52 |
96 | 97 | 8.280497 | TCACGCTTTCTAAGATTCAACTTTTAC | 58.720 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
97 | 98 | 7.266335 | CACGCTTTCTAAGATTCAACTTTTACG | 59.734 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
98 | 99 | 7.170320 | ACGCTTTCTAAGATTCAACTTTTACGA | 59.830 | 33.333 | 0.00 | 0.00 | 0.00 | 3.43 |
99 | 100 | 8.169268 | CGCTTTCTAAGATTCAACTTTTACGAT | 58.831 | 33.333 | 0.00 | 0.00 | 0.00 | 3.73 |
121 | 122 | 9.559958 | ACGATAAATTCAATCAACAAGATCAAC | 57.440 | 29.630 | 0.00 | 0.00 | 35.39 | 3.18 |
122 | 123 | 9.778993 | CGATAAATTCAATCAACAAGATCAACT | 57.221 | 29.630 | 0.00 | 0.00 | 35.39 | 3.16 |
124 | 125 | 7.647907 | AAATTCAATCAACAAGATCAACTGC | 57.352 | 32.000 | 0.00 | 0.00 | 35.39 | 4.40 |
125 | 126 | 4.408993 | TCAATCAACAAGATCAACTGCG | 57.591 | 40.909 | 0.00 | 0.00 | 35.39 | 5.18 |
126 | 127 | 3.189080 | TCAATCAACAAGATCAACTGCGG | 59.811 | 43.478 | 0.00 | 0.00 | 35.39 | 5.69 |
127 | 128 | 0.874390 | TCAACAAGATCAACTGCGGC | 59.126 | 50.000 | 0.00 | 0.00 | 0.00 | 6.53 |
128 | 129 | 0.592637 | CAACAAGATCAACTGCGGCA | 59.407 | 50.000 | 1.29 | 1.29 | 0.00 | 5.69 |
129 | 130 | 0.877071 | AACAAGATCAACTGCGGCAG | 59.123 | 50.000 | 27.43 | 27.43 | 37.52 | 4.85 |
130 | 131 | 0.035317 | ACAAGATCAACTGCGGCAGA | 59.965 | 50.000 | 34.70 | 14.79 | 35.18 | 4.26 |
131 | 132 | 1.159285 | CAAGATCAACTGCGGCAGAA | 58.841 | 50.000 | 34.70 | 19.61 | 35.18 | 3.02 |
132 | 133 | 1.129998 | CAAGATCAACTGCGGCAGAAG | 59.870 | 52.381 | 34.70 | 24.42 | 35.18 | 2.85 |
133 | 134 | 0.610174 | AGATCAACTGCGGCAGAAGA | 59.390 | 50.000 | 34.70 | 28.15 | 35.18 | 2.87 |
134 | 135 | 1.002430 | AGATCAACTGCGGCAGAAGAA | 59.998 | 47.619 | 34.70 | 17.26 | 35.18 | 2.52 |
135 | 136 | 1.806542 | GATCAACTGCGGCAGAAGAAA | 59.193 | 47.619 | 34.70 | 15.61 | 35.18 | 2.52 |
136 | 137 | 1.674359 | TCAACTGCGGCAGAAGAAAA | 58.326 | 45.000 | 34.70 | 11.71 | 35.18 | 2.29 |
137 | 138 | 2.020720 | TCAACTGCGGCAGAAGAAAAA | 58.979 | 42.857 | 34.70 | 10.71 | 35.18 | 1.94 |
190 | 191 | 7.158099 | AGGAATTCACTGGTATAACTTTTGC | 57.842 | 36.000 | 7.93 | 0.00 | 0.00 | 3.68 |
191 | 192 | 6.948309 | AGGAATTCACTGGTATAACTTTTGCT | 59.052 | 34.615 | 7.93 | 0.00 | 0.00 | 3.91 |
192 | 193 | 7.121315 | AGGAATTCACTGGTATAACTTTTGCTC | 59.879 | 37.037 | 7.93 | 0.00 | 0.00 | 4.26 |
193 | 194 | 7.121315 | GGAATTCACTGGTATAACTTTTGCTCT | 59.879 | 37.037 | 7.93 | 0.00 | 0.00 | 4.09 |
194 | 195 | 7.617041 | ATTCACTGGTATAACTTTTGCTCTC | 57.383 | 36.000 | 0.00 | 0.00 | 0.00 | 3.20 |
195 | 196 | 5.168569 | TCACTGGTATAACTTTTGCTCTCG | 58.831 | 41.667 | 0.00 | 0.00 | 0.00 | 4.04 |
196 | 197 | 3.933332 | ACTGGTATAACTTTTGCTCTCGC | 59.067 | 43.478 | 0.00 | 0.00 | 0.00 | 5.03 |
197 | 198 | 3.267483 | TGGTATAACTTTTGCTCTCGCC | 58.733 | 45.455 | 0.00 | 0.00 | 34.43 | 5.54 |
198 | 199 | 2.284417 | GGTATAACTTTTGCTCTCGCCG | 59.716 | 50.000 | 0.00 | 0.00 | 34.43 | 6.46 |
199 | 200 | 2.094762 | ATAACTTTTGCTCTCGCCGT | 57.905 | 45.000 | 0.00 | 0.00 | 34.43 | 5.68 |
200 | 201 | 2.728690 | TAACTTTTGCTCTCGCCGTA | 57.271 | 45.000 | 0.00 | 0.00 | 34.43 | 4.02 |
201 | 202 | 1.429463 | AACTTTTGCTCTCGCCGTAG | 58.571 | 50.000 | 0.00 | 0.00 | 34.43 | 3.51 |
202 | 203 | 0.317479 | ACTTTTGCTCTCGCCGTAGT | 59.683 | 50.000 | 0.00 | 0.00 | 34.43 | 2.73 |
203 | 204 | 0.992802 | CTTTTGCTCTCGCCGTAGTC | 59.007 | 55.000 | 0.00 | 0.00 | 34.43 | 2.59 |
204 | 205 | 0.731514 | TTTTGCTCTCGCCGTAGTCG | 60.732 | 55.000 | 0.00 | 0.00 | 34.43 | 4.18 |
214 | 215 | 4.759564 | CGTAGTCGGTCTCGTTGG | 57.240 | 61.111 | 0.00 | 0.00 | 37.69 | 3.77 |
215 | 216 | 1.871772 | CGTAGTCGGTCTCGTTGGT | 59.128 | 57.895 | 0.00 | 0.00 | 37.69 | 3.67 |
216 | 217 | 0.239347 | CGTAGTCGGTCTCGTTGGTT | 59.761 | 55.000 | 0.00 | 0.00 | 37.69 | 3.67 |
217 | 218 | 1.464608 | CGTAGTCGGTCTCGTTGGTTA | 59.535 | 52.381 | 0.00 | 0.00 | 37.69 | 2.85 |
218 | 219 | 2.095768 | CGTAGTCGGTCTCGTTGGTTAA | 60.096 | 50.000 | 0.00 | 0.00 | 37.69 | 2.01 |
219 | 220 | 3.609175 | CGTAGTCGGTCTCGTTGGTTAAA | 60.609 | 47.826 | 0.00 | 0.00 | 37.69 | 1.52 |
220 | 221 | 3.672767 | AGTCGGTCTCGTTGGTTAAAT | 57.327 | 42.857 | 0.00 | 0.00 | 37.69 | 1.40 |
221 | 222 | 3.999046 | AGTCGGTCTCGTTGGTTAAATT | 58.001 | 40.909 | 0.00 | 0.00 | 37.69 | 1.82 |
222 | 223 | 4.383173 | AGTCGGTCTCGTTGGTTAAATTT | 58.617 | 39.130 | 0.00 | 0.00 | 37.69 | 1.82 |
223 | 224 | 5.540911 | AGTCGGTCTCGTTGGTTAAATTTA | 58.459 | 37.500 | 0.00 | 0.00 | 37.69 | 1.40 |
224 | 225 | 6.168389 | AGTCGGTCTCGTTGGTTAAATTTAT | 58.832 | 36.000 | 0.00 | 0.00 | 37.69 | 1.40 |
225 | 226 | 6.091713 | AGTCGGTCTCGTTGGTTAAATTTATG | 59.908 | 38.462 | 0.00 | 0.00 | 37.69 | 1.90 |
226 | 227 | 6.091169 | GTCGGTCTCGTTGGTTAAATTTATGA | 59.909 | 38.462 | 0.00 | 0.00 | 37.69 | 2.15 |
227 | 228 | 6.819649 | TCGGTCTCGTTGGTTAAATTTATGAT | 59.180 | 34.615 | 0.00 | 0.00 | 37.69 | 2.45 |
228 | 229 | 7.010738 | TCGGTCTCGTTGGTTAAATTTATGATC | 59.989 | 37.037 | 0.00 | 0.00 | 37.69 | 2.92 |
229 | 230 | 7.201574 | CGGTCTCGTTGGTTAAATTTATGATCA | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
230 | 231 | 8.455682 | GGTCTCGTTGGTTAAATTTATGATCAA | 58.544 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
231 | 232 | 9.834628 | GTCTCGTTGGTTAAATTTATGATCAAA | 57.165 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
233 | 234 | 9.840427 | CTCGTTGGTTAAATTTATGATCAAAGT | 57.160 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
243 | 244 | 8.752766 | AATTTATGATCAAAGTTGAAGCACAG | 57.247 | 30.769 | 0.00 | 0.00 | 41.13 | 3.66 |
244 | 245 | 4.778534 | ATGATCAAAGTTGAAGCACAGG | 57.221 | 40.909 | 0.00 | 0.00 | 41.13 | 4.00 |
245 | 246 | 3.819368 | TGATCAAAGTTGAAGCACAGGA | 58.181 | 40.909 | 0.00 | 0.00 | 41.13 | 3.86 |
246 | 247 | 4.206375 | TGATCAAAGTTGAAGCACAGGAA | 58.794 | 39.130 | 0.00 | 0.00 | 41.13 | 3.36 |
247 | 248 | 4.828939 | TGATCAAAGTTGAAGCACAGGAAT | 59.171 | 37.500 | 0.00 | 0.00 | 41.13 | 3.01 |
248 | 249 | 6.003326 | TGATCAAAGTTGAAGCACAGGAATA | 58.997 | 36.000 | 0.00 | 0.00 | 41.13 | 1.75 |
249 | 250 | 5.947228 | TCAAAGTTGAAGCACAGGAATAG | 57.053 | 39.130 | 0.00 | 0.00 | 33.55 | 1.73 |
250 | 251 | 5.620206 | TCAAAGTTGAAGCACAGGAATAGA | 58.380 | 37.500 | 0.00 | 0.00 | 33.55 | 1.98 |
251 | 252 | 5.702670 | TCAAAGTTGAAGCACAGGAATAGAG | 59.297 | 40.000 | 0.00 | 0.00 | 33.55 | 2.43 |
252 | 253 | 4.213564 | AGTTGAAGCACAGGAATAGAGG | 57.786 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
253 | 254 | 3.840666 | AGTTGAAGCACAGGAATAGAGGA | 59.159 | 43.478 | 0.00 | 0.00 | 0.00 | 3.71 |
254 | 255 | 4.287067 | AGTTGAAGCACAGGAATAGAGGAA | 59.713 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
255 | 256 | 4.478206 | TGAAGCACAGGAATAGAGGAAG | 57.522 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
256 | 257 | 2.998316 | AGCACAGGAATAGAGGAAGC | 57.002 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
257 | 258 | 2.191400 | AGCACAGGAATAGAGGAAGCA | 58.809 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
258 | 259 | 2.776536 | AGCACAGGAATAGAGGAAGCAT | 59.223 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
259 | 260 | 3.201708 | AGCACAGGAATAGAGGAAGCATT | 59.798 | 43.478 | 0.00 | 0.00 | 0.00 | 3.56 |
260 | 261 | 4.410228 | AGCACAGGAATAGAGGAAGCATTA | 59.590 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
261 | 262 | 5.072872 | AGCACAGGAATAGAGGAAGCATTAT | 59.927 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
262 | 263 | 6.270927 | AGCACAGGAATAGAGGAAGCATTATA | 59.729 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
263 | 264 | 6.370166 | GCACAGGAATAGAGGAAGCATTATAC | 59.630 | 42.308 | 0.00 | 0.00 | 0.00 | 1.47 |
264 | 265 | 7.675062 | CACAGGAATAGAGGAAGCATTATACT | 58.325 | 38.462 | 0.00 | 0.00 | 0.00 | 2.12 |
265 | 266 | 7.816995 | CACAGGAATAGAGGAAGCATTATACTC | 59.183 | 40.741 | 0.00 | 0.00 | 0.00 | 2.59 |
266 | 267 | 7.038658 | ACAGGAATAGAGGAAGCATTATACTCC | 60.039 | 40.741 | 0.00 | 0.00 | 0.00 | 3.85 |
267 | 268 | 6.442244 | AGGAATAGAGGAAGCATTATACTCCC | 59.558 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
268 | 269 | 6.442244 | GGAATAGAGGAAGCATTATACTCCCT | 59.558 | 42.308 | 0.00 | 0.00 | 0.00 | 4.20 |
269 | 270 | 7.364320 | GGAATAGAGGAAGCATTATACTCCCTC | 60.364 | 44.444 | 0.00 | 0.00 | 39.08 | 4.30 |
270 | 271 | 4.164204 | AGAGGAAGCATTATACTCCCTCC | 58.836 | 47.826 | 0.00 | 0.00 | 39.48 | 4.30 |
271 | 272 | 2.900546 | AGGAAGCATTATACTCCCTCCG | 59.099 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
272 | 273 | 2.633481 | GGAAGCATTATACTCCCTCCGT | 59.367 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
273 | 274 | 3.071167 | GGAAGCATTATACTCCCTCCGTT | 59.929 | 47.826 | 0.00 | 0.00 | 0.00 | 4.44 |
274 | 275 | 4.444449 | GGAAGCATTATACTCCCTCCGTTT | 60.444 | 45.833 | 0.00 | 0.00 | 0.00 | 3.60 |
275 | 276 | 4.772886 | AGCATTATACTCCCTCCGTTTT | 57.227 | 40.909 | 0.00 | 0.00 | 0.00 | 2.43 |
276 | 277 | 5.112129 | AGCATTATACTCCCTCCGTTTTT | 57.888 | 39.130 | 0.00 | 0.00 | 0.00 | 1.94 |
277 | 278 | 6.243216 | AGCATTATACTCCCTCCGTTTTTA | 57.757 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
278 | 279 | 6.838382 | AGCATTATACTCCCTCCGTTTTTAT | 58.162 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
279 | 280 | 7.287810 | AGCATTATACTCCCTCCGTTTTTATT | 58.712 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
280 | 281 | 7.778382 | AGCATTATACTCCCTCCGTTTTTATTT | 59.222 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
281 | 282 | 9.059260 | GCATTATACTCCCTCCGTTTTTATTTA | 57.941 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
287 | 288 | 7.993101 | ACTCCCTCCGTTTTTATTTAATTAGC | 58.007 | 34.615 | 0.00 | 0.00 | 0.00 | 3.09 |
288 | 289 | 7.018635 | TCCCTCCGTTTTTATTTAATTAGCG | 57.981 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
289 | 290 | 6.598850 | TCCCTCCGTTTTTATTTAATTAGCGT | 59.401 | 34.615 | 0.00 | 0.00 | 0.00 | 5.07 |
290 | 291 | 7.768120 | TCCCTCCGTTTTTATTTAATTAGCGTA | 59.232 | 33.333 | 0.00 | 0.00 | 0.00 | 4.42 |
291 | 292 | 8.562052 | CCCTCCGTTTTTATTTAATTAGCGTAT | 58.438 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
292 | 293 | 9.940166 | CCTCCGTTTTTATTTAATTAGCGTATT | 57.060 | 29.630 | 0.00 | 0.00 | 0.00 | 1.89 |
303 | 304 | 8.495361 | TTTAATTAGCGTATTAGCTTTGGTCA | 57.505 | 30.769 | 0.00 | 0.00 | 46.80 | 4.02 |
304 | 305 | 6.995511 | AATTAGCGTATTAGCTTTGGTCAA | 57.004 | 33.333 | 0.00 | 0.00 | 46.80 | 3.18 |
305 | 306 | 6.995511 | ATTAGCGTATTAGCTTTGGTCAAA | 57.004 | 33.333 | 0.00 | 0.00 | 46.80 | 2.69 |
306 | 307 | 4.946784 | AGCGTATTAGCTTTGGTCAAAG | 57.053 | 40.909 | 16.57 | 16.57 | 46.80 | 2.77 |
307 | 308 | 4.324267 | AGCGTATTAGCTTTGGTCAAAGT | 58.676 | 39.130 | 20.33 | 12.06 | 46.80 | 2.66 |
308 | 309 | 4.392138 | AGCGTATTAGCTTTGGTCAAAGTC | 59.608 | 41.667 | 20.33 | 14.14 | 46.80 | 3.01 |
309 | 310 | 6.029289 | AGCGTATTAGCTTTGGTCAAAGTCA | 61.029 | 40.000 | 20.33 | 9.22 | 46.80 | 3.41 |
310 | 311 | 7.460287 | AGCGTATTAGCTTTGGTCAAAGTCAA | 61.460 | 38.462 | 20.33 | 15.46 | 46.80 | 3.18 |
311 | 312 | 9.162451 | AGCGTATTAGCTTTGGTCAAAGTCAAG | 62.162 | 40.741 | 20.33 | 9.92 | 46.80 | 3.02 |
375 | 376 | 8.634444 | TGGCATATACAATAACAAACCAATACC | 58.366 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
376 | 377 | 8.634444 | GGCATATACAATAACAAACCAATACCA | 58.366 | 33.333 | 0.00 | 0.00 | 0.00 | 3.25 |
388 | 389 | 9.874205 | AACAAACCAATACCATTAGATTCATTG | 57.126 | 29.630 | 0.00 | 0.00 | 0.00 | 2.82 |
389 | 390 | 9.034800 | ACAAACCAATACCATTAGATTCATTGT | 57.965 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
390 | 391 | 9.874205 | CAAACCAATACCATTAGATTCATTGTT | 57.126 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
391 | 392 | 9.874205 | AAACCAATACCATTAGATTCATTGTTG | 57.126 | 29.630 | 0.00 | 0.00 | 0.00 | 3.33 |
392 | 393 | 8.821686 | ACCAATACCATTAGATTCATTGTTGA | 57.178 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
393 | 394 | 9.253832 | ACCAATACCATTAGATTCATTGTTGAA | 57.746 | 29.630 | 0.00 | 0.00 | 45.57 | 2.69 |
483 | 484 | 6.332735 | ACTTTAGGAAGTTTGATTTCAGCC | 57.667 | 37.500 | 0.00 | 0.00 | 43.48 | 4.85 |
484 | 485 | 5.833131 | ACTTTAGGAAGTTTGATTTCAGCCA | 59.167 | 36.000 | 0.00 | 0.00 | 43.48 | 4.75 |
485 | 486 | 6.323739 | ACTTTAGGAAGTTTGATTTCAGCCAA | 59.676 | 34.615 | 0.00 | 0.00 | 43.48 | 4.52 |
486 | 487 | 4.590850 | AGGAAGTTTGATTTCAGCCAAC | 57.409 | 40.909 | 0.00 | 0.00 | 0.00 | 3.77 |
487 | 488 | 4.218312 | AGGAAGTTTGATTTCAGCCAACT | 58.782 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
488 | 489 | 4.279420 | AGGAAGTTTGATTTCAGCCAACTC | 59.721 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
489 | 490 | 4.279420 | GGAAGTTTGATTTCAGCCAACTCT | 59.721 | 41.667 | 0.00 | 0.00 | 0.00 | 3.24 |
490 | 491 | 5.473504 | GGAAGTTTGATTTCAGCCAACTCTA | 59.526 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
491 | 492 | 6.016276 | GGAAGTTTGATTTCAGCCAACTCTAA | 60.016 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
492 | 493 | 7.309438 | GGAAGTTTGATTTCAGCCAACTCTAAT | 60.309 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
493 | 494 | 8.635765 | AAGTTTGATTTCAGCCAACTCTAATA | 57.364 | 30.769 | 0.00 | 0.00 | 0.00 | 0.98 |
494 | 495 | 8.814038 | AGTTTGATTTCAGCCAACTCTAATAT | 57.186 | 30.769 | 0.00 | 0.00 | 0.00 | 1.28 |
495 | 496 | 8.680903 | AGTTTGATTTCAGCCAACTCTAATATG | 58.319 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
496 | 497 | 6.624352 | TGATTTCAGCCAACTCTAATATGC | 57.376 | 37.500 | 0.00 | 0.00 | 0.00 | 3.14 |
497 | 498 | 5.237127 | TGATTTCAGCCAACTCTAATATGCG | 59.763 | 40.000 | 0.00 | 0.00 | 0.00 | 4.73 |
498 | 499 | 3.111853 | TCAGCCAACTCTAATATGCGG | 57.888 | 47.619 | 0.00 | 0.00 | 0.00 | 5.69 |
499 | 500 | 2.698274 | TCAGCCAACTCTAATATGCGGA | 59.302 | 45.455 | 0.00 | 0.00 | 0.00 | 5.54 |
500 | 501 | 3.062763 | CAGCCAACTCTAATATGCGGAG | 58.937 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
501 | 502 | 2.700897 | AGCCAACTCTAATATGCGGAGT | 59.299 | 45.455 | 0.00 | 0.00 | 41.37 | 3.85 |
502 | 503 | 3.895656 | AGCCAACTCTAATATGCGGAGTA | 59.104 | 43.478 | 6.10 | 0.00 | 39.09 | 2.59 |
503 | 504 | 4.344102 | AGCCAACTCTAATATGCGGAGTAA | 59.656 | 41.667 | 6.10 | 0.00 | 39.09 | 2.24 |
504 | 505 | 5.054477 | GCCAACTCTAATATGCGGAGTAAA | 58.946 | 41.667 | 6.10 | 0.00 | 39.09 | 2.01 |
505 | 506 | 5.701290 | GCCAACTCTAATATGCGGAGTAAAT | 59.299 | 40.000 | 6.10 | 0.00 | 39.09 | 1.40 |
506 | 507 | 6.872020 | GCCAACTCTAATATGCGGAGTAAATA | 59.128 | 38.462 | 6.10 | 0.00 | 39.09 | 1.40 |
507 | 508 | 7.386848 | GCCAACTCTAATATGCGGAGTAAATAA | 59.613 | 37.037 | 6.10 | 0.00 | 39.09 | 1.40 |
508 | 509 | 9.268268 | CCAACTCTAATATGCGGAGTAAATAAA | 57.732 | 33.333 | 6.10 | 0.00 | 39.09 | 1.40 |
512 | 513 | 9.793245 | CTCTAATATGCGGAGTAAATAAAAACG | 57.207 | 33.333 | 0.00 | 0.00 | 0.00 | 3.60 |
513 | 514 | 8.767085 | TCTAATATGCGGAGTAAATAAAAACGG | 58.233 | 33.333 | 0.00 | 0.00 | 0.00 | 4.44 |
514 | 515 | 7.556733 | AATATGCGGAGTAAATAAAAACGGA | 57.443 | 32.000 | 0.00 | 0.00 | 0.00 | 4.69 |
515 | 516 | 4.932268 | TGCGGAGTAAATAAAAACGGAG | 57.068 | 40.909 | 0.00 | 0.00 | 0.00 | 4.63 |
516 | 517 | 3.685756 | TGCGGAGTAAATAAAAACGGAGG | 59.314 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
517 | 518 | 3.064408 | GCGGAGTAAATAAAAACGGAGGG | 59.936 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
518 | 519 | 4.506758 | CGGAGTAAATAAAAACGGAGGGA | 58.493 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
519 | 520 | 4.569564 | CGGAGTAAATAAAAACGGAGGGAG | 59.430 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
623 | 624 | 3.057736 | CCAAATGAGCACCTCAGAACAAG | 60.058 | 47.826 | 1.20 | 0.00 | 44.08 | 3.16 |
660 | 684 | 4.855388 | TGTTGACTAACGAAGAGTATTCGC | 59.145 | 41.667 | 19.19 | 3.89 | 44.98 | 4.70 |
677 | 701 | 5.931441 | ATTCGCACAGCTATTCTATTTCC | 57.069 | 39.130 | 0.00 | 0.00 | 0.00 | 3.13 |
722 | 746 | 5.480642 | AATGTTATCATTGGTTGGCACAA | 57.519 | 34.783 | 0.00 | 0.00 | 42.63 | 3.33 |
749 | 778 | 7.338703 | ACTGTCTGACCAAGATTATTCGTACTA | 59.661 | 37.037 | 5.17 | 0.00 | 37.23 | 1.82 |
750 | 779 | 7.704271 | TGTCTGACCAAGATTATTCGTACTAG | 58.296 | 38.462 | 5.17 | 0.00 | 37.23 | 2.57 |
751 | 780 | 7.338703 | TGTCTGACCAAGATTATTCGTACTAGT | 59.661 | 37.037 | 5.17 | 0.00 | 37.23 | 2.57 |
867 | 899 | 3.649277 | CTCCCTCGTTGACCTGCGG | 62.649 | 68.421 | 0.00 | 0.00 | 0.00 | 5.69 |
870 | 902 | 4.379243 | CTCGTTGACCTGCGGCCT | 62.379 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
871 | 903 | 4.680237 | TCGTTGACCTGCGGCCTG | 62.680 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
873 | 905 | 4.643387 | GTTGACCTGCGGCCTGGT | 62.643 | 66.667 | 13.39 | 13.39 | 44.89 | 4.00 |
885 | 917 | 2.825836 | CCTGGTCGCCTGGAATGC | 60.826 | 66.667 | 13.96 | 0.00 | 44.09 | 3.56 |
922 | 954 | 3.073798 | TCCATTTCTAAGCAACTGGACCA | 59.926 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
929 | 961 | 2.435372 | AGCAACTGGACCAAGTTTGA | 57.565 | 45.000 | 12.34 | 0.00 | 38.34 | 2.69 |
965 | 997 | 0.999406 | CAATTCTCCACCACGCGTAG | 59.001 | 55.000 | 13.44 | 7.50 | 0.00 | 3.51 |
966 | 998 | 0.108329 | AATTCTCCACCACGCGTAGG | 60.108 | 55.000 | 13.44 | 18.52 | 0.00 | 3.18 |
967 | 999 | 0.968901 | ATTCTCCACCACGCGTAGGA | 60.969 | 55.000 | 27.07 | 24.15 | 0.00 | 2.94 |
968 | 1000 | 2.490217 | CTCCACCACGCGTAGGAG | 59.510 | 66.667 | 28.58 | 28.58 | 41.43 | 3.69 |
969 | 1001 | 2.282674 | TCCACCACGCGTAGGAGT | 60.283 | 61.111 | 27.07 | 14.35 | 0.00 | 3.85 |
970 | 1002 | 1.002257 | TCCACCACGCGTAGGAGTA | 60.002 | 57.895 | 27.07 | 9.72 | 0.00 | 2.59 |
971 | 1003 | 1.138247 | CCACCACGCGTAGGAGTAC | 59.862 | 63.158 | 27.07 | 0.00 | 0.00 | 2.73 |
992 | 1024 | 2.749621 | CCCCTGTTCATTTCCTTCTTCG | 59.250 | 50.000 | 0.00 | 0.00 | 0.00 | 3.79 |
998 | 1030 | 2.699954 | TCATTTCCTTCTTCGGCTCAC | 58.300 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
1218 | 1262 | 4.262617 | GGTTCAACAAGGTCCCTAAGATC | 58.737 | 47.826 | 0.00 | 0.00 | 0.00 | 2.75 |
1269 | 1313 | 2.516448 | GGTCATCGACCCCATCTCA | 58.484 | 57.895 | 1.47 | 0.00 | 46.19 | 3.27 |
1698 | 1742 | 2.514592 | ATGATTGGCGCCCTGACG | 60.515 | 61.111 | 26.77 | 0.00 | 0.00 | 4.35 |
1710 | 1754 | 0.109781 | CCCTGACGCCAAATTTCACG | 60.110 | 55.000 | 7.61 | 7.61 | 0.00 | 4.35 |
1762 | 1806 | 0.650512 | GTACACATTGCGGGATGACG | 59.349 | 55.000 | 2.07 | 0.00 | 0.00 | 4.35 |
1763 | 1807 | 0.533032 | TACACATTGCGGGATGACGA | 59.467 | 50.000 | 0.00 | 0.00 | 35.47 | 4.20 |
1908 | 1952 | 2.227388 | CTGTGGACCTTTCACAATCTGC | 59.773 | 50.000 | 0.00 | 0.00 | 43.45 | 4.26 |
1919 | 1963 | 6.395426 | TTTCACAATCTGCAGAGAAAATGT | 57.605 | 33.333 | 22.96 | 17.00 | 0.00 | 2.71 |
2057 | 2101 | 0.106519 | AACAAGCCAGGTCTTGCAGT | 60.107 | 50.000 | 18.42 | 6.46 | 45.43 | 4.40 |
2058 | 2102 | 0.820891 | ACAAGCCAGGTCTTGCAGTG | 60.821 | 55.000 | 18.42 | 0.00 | 45.43 | 3.66 |
2208 | 2255 | 0.453390 | GTGGCTGCTCTATTTGGCAC | 59.547 | 55.000 | 0.00 | 0.00 | 45.72 | 5.01 |
2315 | 2362 | 1.953686 | GCTGCCAGAAAGTGTGGTAAA | 59.046 | 47.619 | 0.00 | 0.00 | 37.40 | 2.01 |
2395 | 2442 | 2.859165 | TGTCCTGGTGATTCTTGGAC | 57.141 | 50.000 | 0.00 | 0.00 | 45.22 | 4.02 |
2801 | 2869 | 5.646360 | GGAGTCTCAGATACCAGATAGCTAC | 59.354 | 48.000 | 0.00 | 0.00 | 0.00 | 3.58 |
3104 | 3172 | 6.039829 | GGAAGGAGAAATTCAAGTCAAGTTGT | 59.960 | 38.462 | 2.11 | 0.00 | 0.00 | 3.32 |
3499 | 3573 | 1.071605 | GTGCGTTGGAGTTGCTCTAG | 58.928 | 55.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3619 | 3706 | 5.303165 | TCATATTCCAGCAGATGTGACATC | 58.697 | 41.667 | 17.46 | 17.46 | 0.00 | 3.06 |
3715 | 3804 | 2.124570 | CATTCCTGGGGTCAGCCG | 60.125 | 66.667 | 0.00 | 0.00 | 39.61 | 5.52 |
3799 | 3910 | 7.872993 | GCACTACTGCATATAGGAAAACTCATA | 59.127 | 37.037 | 9.34 | 0.00 | 43.62 | 2.15 |
3862 | 3973 | 3.197549 | TCATAGCACACAGTAGATTGGCA | 59.802 | 43.478 | 0.00 | 0.00 | 0.00 | 4.92 |
3878 | 3989 | 3.579534 | TGGCAAACAAACTACCCACTA | 57.420 | 42.857 | 0.00 | 0.00 | 0.00 | 2.74 |
3930 | 4042 | 1.351017 | TCTTCAAACCTAGGGGCACAG | 59.649 | 52.381 | 14.81 | 3.49 | 35.63 | 3.66 |
3962 | 4074 | 1.687493 | GTAGGAGAGGCTGGCAGGT | 60.687 | 63.158 | 17.64 | 0.00 | 0.00 | 4.00 |
4048 | 4161 | 0.810426 | TTAACAGCCGTCGTGCAACA | 60.810 | 50.000 | 8.15 | 0.00 | 35.74 | 3.33 |
4098 | 4211 | 0.322187 | TCGACGACTGATCCTGACCA | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4283 | 4396 | 3.330267 | CGCCAGATATAAAAGAGGAGGC | 58.670 | 50.000 | 0.00 | 0.00 | 36.33 | 4.70 |
4313 | 4426 | 2.758130 | TGGGCAGAGGACATACATACA | 58.242 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
4374 | 4487 | 1.139853 | GTGCTACAGGGGATCAGAAGG | 59.860 | 57.143 | 0.00 | 0.00 | 0.00 | 3.46 |
4381 | 4494 | 1.132881 | AGGGGATCAGAAGGCCTCTAG | 60.133 | 57.143 | 5.23 | 0.00 | 28.53 | 2.43 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
3 | 4 | 3.497942 | GCCAAAAGGTAGTCCAAGAAGGA | 60.498 | 47.826 | 0.00 | 0.00 | 46.75 | 3.36 |
4 | 5 | 2.820197 | GCCAAAAGGTAGTCCAAGAAGG | 59.180 | 50.000 | 0.00 | 0.00 | 39.47 | 3.46 |
5 | 6 | 3.503748 | CAGCCAAAAGGTAGTCCAAGAAG | 59.496 | 47.826 | 0.00 | 0.00 | 35.89 | 2.85 |
6 | 7 | 3.486383 | CAGCCAAAAGGTAGTCCAAGAA | 58.514 | 45.455 | 0.00 | 0.00 | 35.89 | 2.52 |
7 | 8 | 2.224769 | CCAGCCAAAAGGTAGTCCAAGA | 60.225 | 50.000 | 0.00 | 0.00 | 35.89 | 3.02 |
8 | 9 | 2.162681 | CCAGCCAAAAGGTAGTCCAAG | 58.837 | 52.381 | 0.00 | 0.00 | 35.89 | 3.61 |
9 | 10 | 1.777878 | TCCAGCCAAAAGGTAGTCCAA | 59.222 | 47.619 | 0.00 | 0.00 | 35.89 | 3.53 |
10 | 11 | 1.073284 | GTCCAGCCAAAAGGTAGTCCA | 59.927 | 52.381 | 0.00 | 0.00 | 35.89 | 4.02 |
11 | 12 | 1.351350 | AGTCCAGCCAAAAGGTAGTCC | 59.649 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
12 | 13 | 2.427506 | CAGTCCAGCCAAAAGGTAGTC | 58.572 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
13 | 14 | 1.073923 | CCAGTCCAGCCAAAAGGTAGT | 59.926 | 52.381 | 0.00 | 0.00 | 0.00 | 2.73 |
14 | 15 | 1.351017 | TCCAGTCCAGCCAAAAGGTAG | 59.649 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
15 | 16 | 1.351017 | CTCCAGTCCAGCCAAAAGGTA | 59.649 | 52.381 | 0.00 | 0.00 | 0.00 | 3.08 |
16 | 17 | 0.111253 | CTCCAGTCCAGCCAAAAGGT | 59.889 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
17 | 18 | 1.246737 | GCTCCAGTCCAGCCAAAAGG | 61.247 | 60.000 | 0.00 | 0.00 | 0.00 | 3.11 |
18 | 19 | 0.538057 | TGCTCCAGTCCAGCCAAAAG | 60.538 | 55.000 | 0.00 | 0.00 | 35.89 | 2.27 |
19 | 20 | 0.112995 | ATGCTCCAGTCCAGCCAAAA | 59.887 | 50.000 | 0.00 | 0.00 | 35.89 | 2.44 |
20 | 21 | 0.609957 | CATGCTCCAGTCCAGCCAAA | 60.610 | 55.000 | 0.00 | 0.00 | 35.89 | 3.28 |
21 | 22 | 1.001764 | CATGCTCCAGTCCAGCCAA | 60.002 | 57.895 | 0.00 | 0.00 | 35.89 | 4.52 |
22 | 23 | 0.909133 | TACATGCTCCAGTCCAGCCA | 60.909 | 55.000 | 0.00 | 0.00 | 35.89 | 4.75 |
23 | 24 | 0.462759 | GTACATGCTCCAGTCCAGCC | 60.463 | 60.000 | 0.00 | 0.00 | 35.89 | 4.85 |
24 | 25 | 0.539051 | AGTACATGCTCCAGTCCAGC | 59.461 | 55.000 | 0.00 | 0.00 | 37.40 | 4.85 |
25 | 26 | 2.100584 | GAGAGTACATGCTCCAGTCCAG | 59.899 | 54.545 | 0.00 | 0.00 | 36.20 | 3.86 |
26 | 27 | 2.103373 | GAGAGTACATGCTCCAGTCCA | 58.897 | 52.381 | 0.00 | 0.00 | 36.20 | 4.02 |
27 | 28 | 2.383855 | AGAGAGTACATGCTCCAGTCC | 58.616 | 52.381 | 0.00 | 0.00 | 36.20 | 3.85 |
28 | 29 | 4.429108 | GAAAGAGAGTACATGCTCCAGTC | 58.571 | 47.826 | 0.00 | 0.00 | 36.20 | 3.51 |
29 | 30 | 3.119316 | CGAAAGAGAGTACATGCTCCAGT | 60.119 | 47.826 | 0.00 | 0.00 | 36.20 | 4.00 |
30 | 31 | 3.119316 | ACGAAAGAGAGTACATGCTCCAG | 60.119 | 47.826 | 0.00 | 0.00 | 36.20 | 3.86 |
31 | 32 | 2.826128 | ACGAAAGAGAGTACATGCTCCA | 59.174 | 45.455 | 0.00 | 0.00 | 36.20 | 3.86 |
32 | 33 | 3.512033 | ACGAAAGAGAGTACATGCTCC | 57.488 | 47.619 | 0.00 | 0.00 | 36.20 | 4.70 |
33 | 34 | 5.847670 | AAAACGAAAGAGAGTACATGCTC | 57.152 | 39.130 | 0.00 | 0.00 | 35.82 | 4.26 |
34 | 35 | 7.724305 | TTTAAAACGAAAGAGAGTACATGCT | 57.276 | 32.000 | 0.00 | 0.00 | 0.00 | 3.79 |
35 | 36 | 8.950403 | ATTTTAAAACGAAAGAGAGTACATGC | 57.050 | 30.769 | 1.97 | 0.00 | 0.00 | 4.06 |
46 | 47 | 9.820229 | TGAGCACACTATATTTTAAAACGAAAG | 57.180 | 29.630 | 1.97 | 1.87 | 0.00 | 2.62 |
47 | 48 | 9.601971 | GTGAGCACACTATATTTTAAAACGAAA | 57.398 | 29.630 | 7.06 | 0.00 | 42.99 | 3.46 |
48 | 49 | 7.953173 | CGTGAGCACACTATATTTTAAAACGAA | 59.047 | 33.333 | 12.54 | 0.00 | 43.99 | 3.85 |
49 | 50 | 7.449827 | CGTGAGCACACTATATTTTAAAACGA | 58.550 | 34.615 | 12.54 | 0.00 | 43.99 | 3.85 |
50 | 51 | 7.630689 | CGTGAGCACACTATATTTTAAAACG | 57.369 | 36.000 | 12.54 | 0.00 | 43.99 | 3.60 |
69 | 70 | 6.473397 | AAGTTGAATCTTAGAAAGCGTGAG | 57.527 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
70 | 71 | 6.861065 | AAAGTTGAATCTTAGAAAGCGTGA | 57.139 | 33.333 | 0.00 | 0.00 | 0.00 | 4.35 |
71 | 72 | 7.266335 | CGTAAAAGTTGAATCTTAGAAAGCGTG | 59.734 | 37.037 | 0.00 | 0.00 | 0.00 | 5.34 |
72 | 73 | 7.170320 | TCGTAAAAGTTGAATCTTAGAAAGCGT | 59.830 | 33.333 | 0.00 | 0.00 | 0.00 | 5.07 |
73 | 74 | 7.507304 | TCGTAAAAGTTGAATCTTAGAAAGCG | 58.493 | 34.615 | 0.00 | 0.00 | 0.00 | 4.68 |
95 | 96 | 9.559958 | GTTGATCTTGTTGATTGAATTTATCGT | 57.440 | 29.630 | 0.00 | 0.00 | 35.14 | 3.73 |
96 | 97 | 9.778993 | AGTTGATCTTGTTGATTGAATTTATCG | 57.221 | 29.630 | 0.00 | 0.00 | 35.14 | 2.92 |
98 | 99 | 9.362539 | GCAGTTGATCTTGTTGATTGAATTTAT | 57.637 | 29.630 | 0.00 | 0.00 | 35.14 | 1.40 |
99 | 100 | 7.538334 | CGCAGTTGATCTTGTTGATTGAATTTA | 59.462 | 33.333 | 0.00 | 0.00 | 35.14 | 1.40 |
100 | 101 | 6.364165 | CGCAGTTGATCTTGTTGATTGAATTT | 59.636 | 34.615 | 0.00 | 0.00 | 35.14 | 1.82 |
101 | 102 | 5.860182 | CGCAGTTGATCTTGTTGATTGAATT | 59.140 | 36.000 | 0.00 | 0.00 | 35.14 | 2.17 |
102 | 103 | 5.396484 | CGCAGTTGATCTTGTTGATTGAAT | 58.604 | 37.500 | 0.00 | 0.00 | 35.14 | 2.57 |
103 | 104 | 4.320421 | CCGCAGTTGATCTTGTTGATTGAA | 60.320 | 41.667 | 0.00 | 0.00 | 35.14 | 2.69 |
104 | 105 | 3.189080 | CCGCAGTTGATCTTGTTGATTGA | 59.811 | 43.478 | 0.00 | 0.00 | 35.14 | 2.57 |
105 | 106 | 3.495193 | CCGCAGTTGATCTTGTTGATTG | 58.505 | 45.455 | 0.00 | 0.00 | 35.14 | 2.67 |
106 | 107 | 2.095059 | GCCGCAGTTGATCTTGTTGATT | 60.095 | 45.455 | 0.00 | 0.00 | 35.14 | 2.57 |
107 | 108 | 1.470098 | GCCGCAGTTGATCTTGTTGAT | 59.530 | 47.619 | 0.00 | 0.00 | 38.27 | 2.57 |
108 | 109 | 0.874390 | GCCGCAGTTGATCTTGTTGA | 59.126 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
109 | 110 | 0.592637 | TGCCGCAGTTGATCTTGTTG | 59.407 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
110 | 111 | 0.877071 | CTGCCGCAGTTGATCTTGTT | 59.123 | 50.000 | 12.54 | 0.00 | 0.00 | 2.83 |
111 | 112 | 0.035317 | TCTGCCGCAGTTGATCTTGT | 59.965 | 50.000 | 19.77 | 0.00 | 32.61 | 3.16 |
112 | 113 | 1.129998 | CTTCTGCCGCAGTTGATCTTG | 59.870 | 52.381 | 19.77 | 0.00 | 32.61 | 3.02 |
113 | 114 | 1.002430 | TCTTCTGCCGCAGTTGATCTT | 59.998 | 47.619 | 19.77 | 0.00 | 32.61 | 2.40 |
114 | 115 | 0.610174 | TCTTCTGCCGCAGTTGATCT | 59.390 | 50.000 | 19.77 | 0.00 | 32.61 | 2.75 |
115 | 116 | 1.442769 | TTCTTCTGCCGCAGTTGATC | 58.557 | 50.000 | 19.77 | 0.00 | 32.61 | 2.92 |
116 | 117 | 1.896220 | TTTCTTCTGCCGCAGTTGAT | 58.104 | 45.000 | 19.77 | 0.00 | 32.61 | 2.57 |
117 | 118 | 1.674359 | TTTTCTTCTGCCGCAGTTGA | 58.326 | 45.000 | 19.77 | 15.24 | 32.61 | 3.18 |
118 | 119 | 2.490328 | TTTTTCTTCTGCCGCAGTTG | 57.510 | 45.000 | 19.77 | 13.34 | 32.61 | 3.16 |
164 | 165 | 8.903820 | GCAAAAGTTATACCAGTGAATTCCTAT | 58.096 | 33.333 | 2.27 | 0.00 | 0.00 | 2.57 |
165 | 166 | 8.107095 | AGCAAAAGTTATACCAGTGAATTCCTA | 58.893 | 33.333 | 2.27 | 0.00 | 0.00 | 2.94 |
166 | 167 | 6.948309 | AGCAAAAGTTATACCAGTGAATTCCT | 59.052 | 34.615 | 2.27 | 0.00 | 0.00 | 3.36 |
167 | 168 | 7.121315 | AGAGCAAAAGTTATACCAGTGAATTCC | 59.879 | 37.037 | 2.27 | 0.00 | 0.00 | 3.01 |
168 | 169 | 8.045176 | AGAGCAAAAGTTATACCAGTGAATTC | 57.955 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
169 | 170 | 7.148407 | CGAGAGCAAAAGTTATACCAGTGAATT | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
170 | 171 | 6.313905 | CGAGAGCAAAAGTTATACCAGTGAAT | 59.686 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
171 | 172 | 5.637810 | CGAGAGCAAAAGTTATACCAGTGAA | 59.362 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
172 | 173 | 5.168569 | CGAGAGCAAAAGTTATACCAGTGA | 58.831 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
173 | 174 | 5.456192 | CGAGAGCAAAAGTTATACCAGTG | 57.544 | 43.478 | 0.00 | 0.00 | 0.00 | 3.66 |
197 | 198 | 0.239347 | AACCAACGAGACCGACTACG | 59.761 | 55.000 | 0.00 | 0.00 | 39.50 | 3.51 |
198 | 199 | 3.559238 | TTAACCAACGAGACCGACTAC | 57.441 | 47.619 | 0.00 | 0.00 | 39.50 | 2.73 |
199 | 200 | 4.789012 | ATTTAACCAACGAGACCGACTA | 57.211 | 40.909 | 0.00 | 0.00 | 39.50 | 2.59 |
200 | 201 | 3.672767 | ATTTAACCAACGAGACCGACT | 57.327 | 42.857 | 0.00 | 0.00 | 39.50 | 4.18 |
201 | 202 | 4.737353 | AAATTTAACCAACGAGACCGAC | 57.263 | 40.909 | 0.00 | 0.00 | 39.50 | 4.79 |
202 | 203 | 6.164876 | TCATAAATTTAACCAACGAGACCGA | 58.835 | 36.000 | 1.21 | 0.00 | 39.50 | 4.69 |
203 | 204 | 6.411630 | TCATAAATTTAACCAACGAGACCG | 57.588 | 37.500 | 1.21 | 0.00 | 42.50 | 4.79 |
204 | 205 | 7.981142 | TGATCATAAATTTAACCAACGAGACC | 58.019 | 34.615 | 1.21 | 0.00 | 0.00 | 3.85 |
205 | 206 | 9.834628 | TTTGATCATAAATTTAACCAACGAGAC | 57.165 | 29.630 | 1.21 | 0.00 | 0.00 | 3.36 |
207 | 208 | 9.840427 | ACTTTGATCATAAATTTAACCAACGAG | 57.160 | 29.630 | 1.21 | 3.35 | 0.00 | 4.18 |
217 | 218 | 9.199982 | CTGTGCTTCAACTTTGATCATAAATTT | 57.800 | 29.630 | 0.00 | 0.00 | 37.00 | 1.82 |
218 | 219 | 7.816031 | CCTGTGCTTCAACTTTGATCATAAATT | 59.184 | 33.333 | 0.00 | 0.00 | 37.00 | 1.82 |
219 | 220 | 7.177216 | TCCTGTGCTTCAACTTTGATCATAAAT | 59.823 | 33.333 | 0.00 | 0.00 | 37.00 | 1.40 |
220 | 221 | 6.489700 | TCCTGTGCTTCAACTTTGATCATAAA | 59.510 | 34.615 | 0.00 | 0.00 | 37.00 | 1.40 |
221 | 222 | 6.003326 | TCCTGTGCTTCAACTTTGATCATAA | 58.997 | 36.000 | 0.00 | 0.00 | 37.00 | 1.90 |
222 | 223 | 5.559770 | TCCTGTGCTTCAACTTTGATCATA | 58.440 | 37.500 | 0.00 | 0.00 | 37.00 | 2.15 |
223 | 224 | 4.401022 | TCCTGTGCTTCAACTTTGATCAT | 58.599 | 39.130 | 0.00 | 0.00 | 37.00 | 2.45 |
224 | 225 | 3.819368 | TCCTGTGCTTCAACTTTGATCA | 58.181 | 40.909 | 0.00 | 0.00 | 37.00 | 2.92 |
225 | 226 | 4.836125 | TTCCTGTGCTTCAACTTTGATC | 57.164 | 40.909 | 0.00 | 0.00 | 37.00 | 2.92 |
226 | 227 | 6.240894 | TCTATTCCTGTGCTTCAACTTTGAT | 58.759 | 36.000 | 0.00 | 0.00 | 37.00 | 2.57 |
227 | 228 | 5.620206 | TCTATTCCTGTGCTTCAACTTTGA | 58.380 | 37.500 | 0.00 | 0.00 | 34.92 | 2.69 |
228 | 229 | 5.106396 | CCTCTATTCCTGTGCTTCAACTTTG | 60.106 | 44.000 | 0.00 | 0.00 | 0.00 | 2.77 |
229 | 230 | 5.006386 | CCTCTATTCCTGTGCTTCAACTTT | 58.994 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
230 | 231 | 4.287067 | TCCTCTATTCCTGTGCTTCAACTT | 59.713 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
231 | 232 | 3.840666 | TCCTCTATTCCTGTGCTTCAACT | 59.159 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
232 | 233 | 4.207891 | TCCTCTATTCCTGTGCTTCAAC | 57.792 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
233 | 234 | 4.836825 | CTTCCTCTATTCCTGTGCTTCAA | 58.163 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
234 | 235 | 3.369892 | GCTTCCTCTATTCCTGTGCTTCA | 60.370 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
235 | 236 | 3.202097 | GCTTCCTCTATTCCTGTGCTTC | 58.798 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
236 | 237 | 2.573462 | TGCTTCCTCTATTCCTGTGCTT | 59.427 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
237 | 238 | 2.191400 | TGCTTCCTCTATTCCTGTGCT | 58.809 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
238 | 239 | 2.698855 | TGCTTCCTCTATTCCTGTGC | 57.301 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
239 | 240 | 7.675062 | AGTATAATGCTTCCTCTATTCCTGTG | 58.325 | 38.462 | 0.00 | 0.00 | 0.00 | 3.66 |
240 | 241 | 7.038658 | GGAGTATAATGCTTCCTCTATTCCTGT | 60.039 | 40.741 | 0.00 | 0.00 | 0.00 | 4.00 |
241 | 242 | 7.327214 | GGAGTATAATGCTTCCTCTATTCCTG | 58.673 | 42.308 | 0.00 | 0.00 | 0.00 | 3.86 |
242 | 243 | 6.442244 | GGGAGTATAATGCTTCCTCTATTCCT | 59.558 | 42.308 | 0.00 | 0.00 | 0.00 | 3.36 |
243 | 244 | 6.442244 | AGGGAGTATAATGCTTCCTCTATTCC | 59.558 | 42.308 | 0.00 | 0.00 | 37.39 | 3.01 |
244 | 245 | 7.489239 | AGGGAGTATAATGCTTCCTCTATTC | 57.511 | 40.000 | 0.00 | 0.00 | 37.39 | 1.75 |
250 | 251 | 2.900546 | CGGAGGGAGTATAATGCTTCCT | 59.099 | 50.000 | 18.18 | 5.00 | 44.40 | 3.36 |
251 | 252 | 2.633481 | ACGGAGGGAGTATAATGCTTCC | 59.367 | 50.000 | 12.02 | 12.02 | 34.01 | 3.46 |
252 | 253 | 4.338379 | AACGGAGGGAGTATAATGCTTC | 57.662 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
253 | 254 | 4.772886 | AAACGGAGGGAGTATAATGCTT | 57.227 | 40.909 | 0.00 | 0.00 | 0.00 | 3.91 |
254 | 255 | 4.772886 | AAAACGGAGGGAGTATAATGCT | 57.227 | 40.909 | 0.00 | 0.00 | 0.00 | 3.79 |
255 | 256 | 7.506328 | AATAAAAACGGAGGGAGTATAATGC | 57.494 | 36.000 | 0.00 | 0.00 | 0.00 | 3.56 |
261 | 262 | 9.112725 | GCTAATTAAATAAAAACGGAGGGAGTA | 57.887 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
262 | 263 | 7.201670 | CGCTAATTAAATAAAAACGGAGGGAGT | 60.202 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
263 | 264 | 7.130269 | CGCTAATTAAATAAAAACGGAGGGAG | 58.870 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
264 | 265 | 6.598850 | ACGCTAATTAAATAAAAACGGAGGGA | 59.401 | 34.615 | 0.00 | 0.00 | 0.00 | 4.20 |
265 | 266 | 6.788243 | ACGCTAATTAAATAAAAACGGAGGG | 58.212 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
266 | 267 | 9.940166 | AATACGCTAATTAAATAAAAACGGAGG | 57.060 | 29.630 | 0.00 | 0.00 | 0.00 | 4.30 |
277 | 278 | 9.116067 | TGACCAAAGCTAATACGCTAATTAAAT | 57.884 | 29.630 | 0.00 | 0.00 | 39.86 | 1.40 |
278 | 279 | 8.495361 | TGACCAAAGCTAATACGCTAATTAAA | 57.505 | 30.769 | 0.00 | 0.00 | 39.86 | 1.52 |
279 | 280 | 8.495361 | TTGACCAAAGCTAATACGCTAATTAA | 57.505 | 30.769 | 0.00 | 0.00 | 39.86 | 1.40 |
280 | 281 | 8.495361 | TTTGACCAAAGCTAATACGCTAATTA | 57.505 | 30.769 | 0.00 | 0.00 | 39.86 | 1.40 |
281 | 282 | 6.995511 | TTGACCAAAGCTAATACGCTAATT | 57.004 | 33.333 | 0.00 | 0.00 | 39.86 | 1.40 |
282 | 283 | 6.995511 | TTTGACCAAAGCTAATACGCTAAT | 57.004 | 33.333 | 0.00 | 0.00 | 39.86 | 1.73 |
283 | 284 | 6.417191 | CTTTGACCAAAGCTAATACGCTAA | 57.583 | 37.500 | 9.25 | 0.00 | 40.94 | 3.09 |
285 | 286 | 4.946784 | CTTTGACCAAAGCTAATACGCT | 57.053 | 40.909 | 9.25 | 0.00 | 40.94 | 5.07 |
349 | 350 | 8.634444 | GGTATTGGTTTGTTATTGTATATGCCA | 58.366 | 33.333 | 0.00 | 0.00 | 0.00 | 4.92 |
350 | 351 | 8.634444 | TGGTATTGGTTTGTTATTGTATATGCC | 58.366 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
362 | 363 | 9.874205 | CAATGAATCTAATGGTATTGGTTTGTT | 57.126 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
363 | 364 | 9.034800 | ACAATGAATCTAATGGTATTGGTTTGT | 57.965 | 29.630 | 0.00 | 0.00 | 31.64 | 2.83 |
364 | 365 | 9.874205 | AACAATGAATCTAATGGTATTGGTTTG | 57.126 | 29.630 | 0.00 | 0.00 | 31.64 | 2.93 |
365 | 366 | 9.874205 | CAACAATGAATCTAATGGTATTGGTTT | 57.126 | 29.630 | 0.00 | 0.00 | 31.64 | 3.27 |
366 | 367 | 9.253832 | TCAACAATGAATCTAATGGTATTGGTT | 57.746 | 29.630 | 0.00 | 0.00 | 30.99 | 3.67 |
367 | 368 | 8.821686 | TCAACAATGAATCTAATGGTATTGGT | 57.178 | 30.769 | 0.00 | 0.00 | 30.99 | 3.67 |
445 | 446 | 9.856162 | ACTTCCTAAAGTTTGACCAAGTTTATA | 57.144 | 29.630 | 0.00 | 0.00 | 43.28 | 0.98 |
446 | 447 | 8.762481 | ACTTCCTAAAGTTTGACCAAGTTTAT | 57.238 | 30.769 | 0.00 | 0.00 | 43.28 | 1.40 |
461 | 462 | 6.331369 | TGGCTGAAATCAAACTTCCTAAAG | 57.669 | 37.500 | 0.00 | 0.00 | 38.54 | 1.85 |
462 | 463 | 6.323739 | AGTTGGCTGAAATCAAACTTCCTAAA | 59.676 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
463 | 464 | 5.833131 | AGTTGGCTGAAATCAAACTTCCTAA | 59.167 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
464 | 465 | 5.385198 | AGTTGGCTGAAATCAAACTTCCTA | 58.615 | 37.500 | 0.00 | 0.00 | 0.00 | 2.94 |
465 | 466 | 4.218312 | AGTTGGCTGAAATCAAACTTCCT | 58.782 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
466 | 467 | 4.279420 | AGAGTTGGCTGAAATCAAACTTCC | 59.721 | 41.667 | 1.69 | 0.00 | 30.70 | 3.46 |
467 | 468 | 5.444663 | AGAGTTGGCTGAAATCAAACTTC | 57.555 | 39.130 | 1.69 | 0.00 | 30.70 | 3.01 |
468 | 469 | 6.959639 | TTAGAGTTGGCTGAAATCAAACTT | 57.040 | 33.333 | 1.69 | 0.00 | 30.70 | 2.66 |
469 | 470 | 8.680903 | CATATTAGAGTTGGCTGAAATCAAACT | 58.319 | 33.333 | 0.00 | 0.00 | 30.70 | 2.66 |
470 | 471 | 7.433425 | GCATATTAGAGTTGGCTGAAATCAAAC | 59.567 | 37.037 | 0.00 | 0.00 | 30.70 | 2.93 |
471 | 472 | 7.483307 | GCATATTAGAGTTGGCTGAAATCAAA | 58.517 | 34.615 | 0.00 | 0.00 | 30.70 | 2.69 |
472 | 473 | 6.238456 | CGCATATTAGAGTTGGCTGAAATCAA | 60.238 | 38.462 | 0.00 | 0.00 | 30.70 | 2.57 |
473 | 474 | 5.237127 | CGCATATTAGAGTTGGCTGAAATCA | 59.763 | 40.000 | 0.00 | 0.00 | 30.70 | 2.57 |
474 | 475 | 5.334414 | CCGCATATTAGAGTTGGCTGAAATC | 60.334 | 44.000 | 0.00 | 0.00 | 0.00 | 2.17 |
475 | 476 | 4.516698 | CCGCATATTAGAGTTGGCTGAAAT | 59.483 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
476 | 477 | 3.876914 | CCGCATATTAGAGTTGGCTGAAA | 59.123 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
477 | 478 | 3.133901 | TCCGCATATTAGAGTTGGCTGAA | 59.866 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
478 | 479 | 2.698274 | TCCGCATATTAGAGTTGGCTGA | 59.302 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
479 | 480 | 3.062763 | CTCCGCATATTAGAGTTGGCTG | 58.937 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
480 | 481 | 2.700897 | ACTCCGCATATTAGAGTTGGCT | 59.299 | 45.455 | 0.00 | 0.00 | 37.60 | 4.75 |
481 | 482 | 3.113260 | ACTCCGCATATTAGAGTTGGC | 57.887 | 47.619 | 0.00 | 0.00 | 37.60 | 4.52 |
482 | 483 | 8.827177 | TTATTTACTCCGCATATTAGAGTTGG | 57.173 | 34.615 | 4.78 | 0.00 | 41.09 | 3.77 |
486 | 487 | 9.793245 | CGTTTTTATTTACTCCGCATATTAGAG | 57.207 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
487 | 488 | 8.767085 | CCGTTTTTATTTACTCCGCATATTAGA | 58.233 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
488 | 489 | 8.767085 | TCCGTTTTTATTTACTCCGCATATTAG | 58.233 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
489 | 490 | 8.659925 | TCCGTTTTTATTTACTCCGCATATTA | 57.340 | 30.769 | 0.00 | 0.00 | 0.00 | 0.98 |
490 | 491 | 7.255001 | CCTCCGTTTTTATTTACTCCGCATATT | 60.255 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
491 | 492 | 6.204108 | CCTCCGTTTTTATTTACTCCGCATAT | 59.796 | 38.462 | 0.00 | 0.00 | 0.00 | 1.78 |
492 | 493 | 5.524646 | CCTCCGTTTTTATTTACTCCGCATA | 59.475 | 40.000 | 0.00 | 0.00 | 0.00 | 3.14 |
493 | 494 | 4.334481 | CCTCCGTTTTTATTTACTCCGCAT | 59.666 | 41.667 | 0.00 | 0.00 | 0.00 | 4.73 |
494 | 495 | 3.685756 | CCTCCGTTTTTATTTACTCCGCA | 59.314 | 43.478 | 0.00 | 0.00 | 0.00 | 5.69 |
495 | 496 | 3.064408 | CCCTCCGTTTTTATTTACTCCGC | 59.936 | 47.826 | 0.00 | 0.00 | 0.00 | 5.54 |
496 | 497 | 4.506758 | TCCCTCCGTTTTTATTTACTCCG | 58.493 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
497 | 498 | 5.494724 | ACTCCCTCCGTTTTTATTTACTCC | 58.505 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
498 | 499 | 5.583854 | GGACTCCCTCCGTTTTTATTTACTC | 59.416 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
499 | 500 | 5.013391 | TGGACTCCCTCCGTTTTTATTTACT | 59.987 | 40.000 | 0.00 | 0.00 | 43.03 | 2.24 |
500 | 501 | 5.247862 | TGGACTCCCTCCGTTTTTATTTAC | 58.752 | 41.667 | 0.00 | 0.00 | 43.03 | 2.01 |
501 | 502 | 5.502089 | TGGACTCCCTCCGTTTTTATTTA | 57.498 | 39.130 | 0.00 | 0.00 | 43.03 | 1.40 |
502 | 503 | 4.376225 | TGGACTCCCTCCGTTTTTATTT | 57.624 | 40.909 | 0.00 | 0.00 | 43.03 | 1.40 |
503 | 504 | 4.227527 | AGATGGACTCCCTCCGTTTTTATT | 59.772 | 41.667 | 0.00 | 0.00 | 43.03 | 1.40 |
504 | 505 | 3.780850 | AGATGGACTCCCTCCGTTTTTAT | 59.219 | 43.478 | 0.00 | 0.00 | 43.03 | 1.40 |
505 | 506 | 3.055385 | CAGATGGACTCCCTCCGTTTTTA | 60.055 | 47.826 | 0.00 | 0.00 | 43.03 | 1.52 |
506 | 507 | 1.985895 | AGATGGACTCCCTCCGTTTTT | 59.014 | 47.619 | 0.00 | 0.00 | 43.03 | 1.94 |
507 | 508 | 1.279271 | CAGATGGACTCCCTCCGTTTT | 59.721 | 52.381 | 0.00 | 0.00 | 43.03 | 2.43 |
508 | 509 | 0.905357 | CAGATGGACTCCCTCCGTTT | 59.095 | 55.000 | 0.00 | 0.00 | 43.03 | 3.60 |
509 | 510 | 0.041238 | TCAGATGGACTCCCTCCGTT | 59.959 | 55.000 | 0.00 | 0.00 | 43.03 | 4.44 |
510 | 511 | 0.041238 | TTCAGATGGACTCCCTCCGT | 59.959 | 55.000 | 0.00 | 0.00 | 43.03 | 4.69 |
511 | 512 | 0.461961 | GTTCAGATGGACTCCCTCCG | 59.538 | 60.000 | 0.00 | 0.00 | 43.03 | 4.63 |
512 | 513 | 0.461961 | CGTTCAGATGGACTCCCTCC | 59.538 | 60.000 | 0.00 | 0.00 | 39.97 | 4.30 |
513 | 514 | 0.461961 | CCGTTCAGATGGACTCCCTC | 59.538 | 60.000 | 0.00 | 0.00 | 33.44 | 4.30 |
514 | 515 | 0.978146 | CCCGTTCAGATGGACTCCCT | 60.978 | 60.000 | 0.00 | 0.00 | 33.44 | 4.20 |
515 | 516 | 1.522569 | CCCGTTCAGATGGACTCCC | 59.477 | 63.158 | 0.00 | 0.00 | 33.44 | 4.30 |
516 | 517 | 1.153349 | GCCCGTTCAGATGGACTCC | 60.153 | 63.158 | 0.00 | 0.00 | 33.44 | 3.85 |
517 | 518 | 0.179097 | GAGCCCGTTCAGATGGACTC | 60.179 | 60.000 | 0.00 | 0.00 | 34.81 | 3.36 |
518 | 519 | 0.904865 | TGAGCCCGTTCAGATGGACT | 60.905 | 55.000 | 0.00 | 0.00 | 33.44 | 3.85 |
519 | 520 | 0.741221 | GTGAGCCCGTTCAGATGGAC | 60.741 | 60.000 | 0.00 | 0.00 | 33.44 | 4.02 |
623 | 624 | 0.599204 | TCAACACTCCCGACGAAAGC | 60.599 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
660 | 684 | 3.809832 | CACCGGGAAATAGAATAGCTGTG | 59.190 | 47.826 | 6.32 | 0.00 | 0.00 | 3.66 |
677 | 701 | 9.284594 | CATTGTTTTATCATTTAACTACACCGG | 57.715 | 33.333 | 0.00 | 0.00 | 0.00 | 5.28 |
717 | 741 | 2.288666 | TCTTGGTCAGACAGTTTGTGC | 58.711 | 47.619 | 2.17 | 0.00 | 0.00 | 4.57 |
722 | 746 | 5.794894 | ACGAATAATCTTGGTCAGACAGTT | 58.205 | 37.500 | 2.17 | 0.00 | 32.83 | 3.16 |
749 | 778 | 6.321690 | ACACCGAGAAATAGAATAGCTGTACT | 59.678 | 38.462 | 0.00 | 0.00 | 0.00 | 2.73 |
750 | 779 | 6.505272 | ACACCGAGAAATAGAATAGCTGTAC | 58.495 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
751 | 780 | 6.710597 | ACACCGAGAAATAGAATAGCTGTA | 57.289 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
767 | 796 | 8.697846 | TTGTCTTATCATTTAACTACACCGAG | 57.302 | 34.615 | 0.00 | 0.00 | 0.00 | 4.63 |
868 | 900 | 2.825836 | GCATTCCAGGCGACCAGG | 60.826 | 66.667 | 1.65 | 1.65 | 0.00 | 4.45 |
885 | 917 | 2.398252 | ATGGATGCCAGCTATGATCG | 57.602 | 50.000 | 0.00 | 0.00 | 36.75 | 3.69 |
922 | 954 | 7.461749 | TGGAGGAGTAAGATTGATTCAAACTT | 58.538 | 34.615 | 21.08 | 21.08 | 39.24 | 2.66 |
929 | 961 | 7.092264 | TGGAGAATTGGAGGAGTAAGATTGATT | 60.092 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
965 | 997 | 2.576648 | AGGAAATGAACAGGGGTACTCC | 59.423 | 50.000 | 2.47 | 2.47 | 0.00 | 3.85 |
966 | 998 | 4.019231 | AGAAGGAAATGAACAGGGGTACTC | 60.019 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
967 | 999 | 3.916989 | AGAAGGAAATGAACAGGGGTACT | 59.083 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
968 | 1000 | 4.302559 | AGAAGGAAATGAACAGGGGTAC | 57.697 | 45.455 | 0.00 | 0.00 | 0.00 | 3.34 |
969 | 1001 | 4.564821 | CGAAGAAGGAAATGAACAGGGGTA | 60.565 | 45.833 | 0.00 | 0.00 | 0.00 | 3.69 |
970 | 1002 | 3.767711 | GAAGAAGGAAATGAACAGGGGT | 58.232 | 45.455 | 0.00 | 0.00 | 0.00 | 4.95 |
971 | 1003 | 2.749621 | CGAAGAAGGAAATGAACAGGGG | 59.250 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
992 | 1024 | 1.134551 | GGAGGAGAGTCATTGTGAGCC | 60.135 | 57.143 | 0.00 | 0.00 | 0.00 | 4.70 |
998 | 1030 | 4.440880 | GAAGACATGGAGGAGAGTCATTG | 58.559 | 47.826 | 0.00 | 0.00 | 33.56 | 2.82 |
1218 | 1262 | 2.568090 | GCAGACCAAACCGGCATG | 59.432 | 61.111 | 0.00 | 0.00 | 39.03 | 4.06 |
1349 | 1393 | 0.968405 | GGTTGTGACATTGGCATGGT | 59.032 | 50.000 | 0.00 | 0.00 | 34.27 | 3.55 |
1350 | 1394 | 0.967662 | TGGTTGTGACATTGGCATGG | 59.032 | 50.000 | 0.00 | 0.00 | 34.27 | 3.66 |
1351 | 1395 | 2.406130 | GTTGGTTGTGACATTGGCATG | 58.594 | 47.619 | 0.00 | 0.00 | 36.34 | 4.06 |
1352 | 1396 | 1.000385 | CGTTGGTTGTGACATTGGCAT | 60.000 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
1353 | 1397 | 0.383590 | CGTTGGTTGTGACATTGGCA | 59.616 | 50.000 | 0.00 | 0.00 | 0.00 | 4.92 |
1354 | 1398 | 0.665835 | TCGTTGGTTGTGACATTGGC | 59.334 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
1698 | 1742 | 5.689961 | AGTGTTTATGAACGTGAAATTTGGC | 59.310 | 36.000 | 0.00 | 0.00 | 38.65 | 4.52 |
1710 | 1754 | 6.650807 | TGGACTCATTCTCAGTGTTTATGAAC | 59.349 | 38.462 | 0.00 | 0.00 | 36.29 | 3.18 |
1908 | 1952 | 5.523188 | GCAGAGTGGATCTACATTTTCTCTG | 59.477 | 44.000 | 12.16 | 14.08 | 45.63 | 3.35 |
1919 | 1963 | 0.463204 | GCAGCTGCAGAGTGGATCTA | 59.537 | 55.000 | 33.36 | 0.00 | 41.59 | 1.98 |
2057 | 2101 | 0.759959 | TTGCACGGGGTAGAACTTCA | 59.240 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2058 | 2102 | 1.439679 | CTTGCACGGGGTAGAACTTC | 58.560 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2124 | 2171 | 1.811266 | CCGTTGGCAGTCATCTCCG | 60.811 | 63.158 | 0.00 | 0.00 | 0.00 | 4.63 |
2208 | 2255 | 7.435488 | TGTTGTTTTACATTGTACAATTTCCCG | 59.565 | 33.333 | 18.50 | 9.54 | 33.57 | 5.14 |
2265 | 2312 | 1.069906 | GCAAGGCGGATATAAAGCGTG | 60.070 | 52.381 | 0.00 | 0.00 | 0.00 | 5.34 |
2315 | 2362 | 5.045286 | AGGTTGATTCCACTCTGCTTCTTAT | 60.045 | 40.000 | 0.00 | 0.00 | 0.00 | 1.73 |
2367 | 2414 | 1.673665 | CACCAGGACAAGAGCAGCC | 60.674 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
3104 | 3172 | 4.524802 | AAGGCTGAATAATCACCATCCA | 57.475 | 40.909 | 0.00 | 0.00 | 32.44 | 3.41 |
3499 | 3573 | 3.245519 | GTCCAGAACGAGTTTGAGTCAAC | 59.754 | 47.826 | 4.68 | 1.30 | 0.00 | 3.18 |
3565 | 3652 | 2.158549 | AGGCAAGAAAGCAGGAAGACTT | 60.159 | 45.455 | 0.00 | 0.00 | 35.83 | 3.01 |
3682 | 3770 | 5.695816 | CCAGGAATGCGAAAAGAAATGAAAA | 59.304 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3683 | 3771 | 5.229423 | CCAGGAATGCGAAAAGAAATGAAA | 58.771 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
3684 | 3772 | 4.321899 | CCCAGGAATGCGAAAAGAAATGAA | 60.322 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
3685 | 3773 | 3.193267 | CCCAGGAATGCGAAAAGAAATGA | 59.807 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
3686 | 3774 | 3.514645 | CCCAGGAATGCGAAAAGAAATG | 58.485 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
3687 | 3775 | 2.497273 | CCCCAGGAATGCGAAAAGAAAT | 59.503 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
3688 | 3776 | 1.892474 | CCCCAGGAATGCGAAAAGAAA | 59.108 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
3715 | 3804 | 6.258068 | GCCTTGTAGGAGTACATACAACATTC | 59.742 | 42.308 | 11.91 | 0.00 | 44.49 | 2.67 |
3799 | 3910 | 1.156736 | GCCGTTCAGTGTAATGTGCT | 58.843 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3862 | 3973 | 5.442391 | TGAGCTTTAGTGGGTAGTTTGTTT | 58.558 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
3878 | 3989 | 5.900123 | ACCACTACTGGATACTATGAGCTTT | 59.100 | 40.000 | 0.00 | 0.00 | 40.55 | 3.51 |
3930 | 4042 | 2.695666 | TCTCCTACATGTAAGAGGCAGC | 59.304 | 50.000 | 24.72 | 0.00 | 0.00 | 5.25 |
3962 | 4074 | 7.092354 | TGGGTTAGGGTTCAGTTATAATGCTAA | 60.092 | 37.037 | 0.00 | 0.00 | 0.00 | 3.09 |
4048 | 4161 | 4.627467 | GTGCGATTTTCTCTGATGTACACT | 59.373 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
4113 | 4226 | 1.276421 | CAACAGACGAATCCCCAGACT | 59.724 | 52.381 | 0.00 | 0.00 | 0.00 | 3.24 |
4313 | 4426 | 1.907255 | GGAGTAGTTGGGTGTTAGCCT | 59.093 | 52.381 | 0.00 | 0.00 | 36.53 | 4.58 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.