Multiple sequence alignment - TraesCS2B01G553900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G553900 chr2B 100.000 2324 0 0 1 2324 749148995 749146672 0.000000e+00 4292.0
1 TraesCS2B01G553900 chr2B 95.786 617 21 5 1 614 554729815 554729201 0.000000e+00 990.0
2 TraesCS2B01G553900 chr2B 94.712 624 18 5 1 610 672037412 672038034 0.000000e+00 955.0
3 TraesCS2B01G553900 chr2B 81.757 740 61 33 985 1689 749139123 749138423 3.380000e-153 551.0
4 TraesCS2B01G553900 chr2B 84.543 427 44 9 1918 2323 749178359 749177934 1.000000e-108 403.0
5 TraesCS2B01G553900 chr2B 90.421 261 14 4 634 891 749139453 749139201 1.330000e-87 333.0
6 TraesCS2B01G553900 chr2B 81.218 394 39 21 985 1368 749181510 749181142 3.780000e-73 285.0
7 TraesCS2B01G553900 chr2B 95.833 144 3 3 767 908 749183302 749183160 1.800000e-56 230.0
8 TraesCS2B01G553900 chr2A 94.494 1471 66 11 804 2265 745097279 745095815 0.000000e+00 2254.0
9 TraesCS2B01G553900 chr2A 87.302 630 68 9 1704 2324 745110371 745109745 0.000000e+00 710.0
10 TraesCS2B01G553900 chr2A 83.376 782 79 31 611 1368 745112550 745111796 0.000000e+00 676.0
11 TraesCS2B01G553900 chr2A 79.443 754 67 37 985 1689 745092836 745092122 9.790000e-124 453.0
12 TraesCS2B01G553900 chr2A 89.247 279 19 8 1414 1689 745091346 745091076 2.860000e-89 339.0
13 TraesCS2B01G553900 chr2A 89.231 260 17 6 635 891 745093202 745092951 4.820000e-82 315.0
14 TraesCS2B01G553900 chr2A 98.958 96 1 0 1316 1411 745091479 745091384 3.070000e-39 172.0
15 TraesCS2B01G553900 chr2A 95.238 42 2 0 909 950 745112307 745112266 1.490000e-07 67.6
16 TraesCS2B01G553900 chr2D 91.935 1054 48 13 649 1689 614812197 614811168 0.000000e+00 1441.0
17 TraesCS2B01G553900 chr2D 82.368 777 48 30 967 1689 614804914 614804173 5.530000e-166 593.0
18 TraesCS2B01G553900 chr2D 80.204 783 85 38 612 1368 614819918 614819180 7.360000e-145 523.0
19 TraesCS2B01G553900 chr2D 90.291 206 11 3 687 891 614805147 614804950 6.370000e-66 261.0
20 TraesCS2B01G553900 chr2D 77.174 368 53 20 992 1347 614735175 614734827 3.940000e-43 185.0
21 TraesCS2B01G553900 chr2D 95.238 42 2 0 909 950 614819685 614819644 1.490000e-07 67.6
22 TraesCS2B01G553900 chr2D 97.059 34 1 0 875 908 614811941 614811908 8.970000e-05 58.4
23 TraesCS2B01G553900 chr2D 100.000 31 0 0 611 641 614812222 614812192 8.970000e-05 58.4
24 TraesCS2B01G553900 chr1B 94.888 626 17 5 1 612 450049968 450050592 0.000000e+00 965.0
25 TraesCS2B01G553900 chr7B 94.745 628 16 7 1 613 625711778 625711153 0.000000e+00 961.0
26 TraesCS2B01G553900 chr7B 93.120 625 26 10 1 610 709349761 709349139 0.000000e+00 900.0
27 TraesCS2B01G553900 chr4B 94.880 625 15 7 1 610 604543828 604543206 0.000000e+00 961.0
28 TraesCS2B01G553900 chr3B 94.551 624 20 4 1 610 98010967 98010344 0.000000e+00 952.0
29 TraesCS2B01G553900 chr3B 87.107 318 22 13 1 304 228652261 228651949 2.210000e-90 342.0
30 TraesCS2B01G553900 chr1D 89.776 626 39 19 1 610 355478548 355479164 0.000000e+00 778.0
31 TraesCS2B01G553900 chr1D 93.238 281 13 5 1 280 299879709 299879434 2.150000e-110 409.0
32 TraesCS2B01G553900 chr1D 87.582 306 17 14 1 292 438310206 438310504 3.700000e-88 335.0
33 TraesCS2B01G553900 chr5D 85.984 635 56 20 1 609 385123103 385122476 0.000000e+00 649.0
34 TraesCS2B01G553900 chr5D 90.253 277 15 10 1 269 65991967 65991695 3.670000e-93 351.0
35 TraesCS2B01G553900 chr5B 85.023 641 52 34 1 610 554681865 554681238 1.530000e-171 612.0
36 TraesCS2B01G553900 chr5B 85.451 488 37 16 1 474 692639749 692639282 5.810000e-131 477.0
37 TraesCS2B01G553900 chr7D 88.611 360 16 13 1 340 173594364 173594010 4.620000e-112 414.0
38 TraesCS2B01G553900 chr1A 100.000 30 0 0 1704 1733 364224321 364224350 3.230000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G553900 chr2B 749146672 749148995 2323 True 4292.000000 4292 100.000000 1 2324 1 chr2B.!!$R2 2323
1 TraesCS2B01G553900 chr2B 554729201 554729815 614 True 990.000000 990 95.786000 1 614 1 chr2B.!!$R1 613
2 TraesCS2B01G553900 chr2B 672037412 672038034 622 False 955.000000 955 94.712000 1 610 1 chr2B.!!$F1 609
3 TraesCS2B01G553900 chr2B 749138423 749139453 1030 True 442.000000 551 86.089000 634 1689 2 chr2B.!!$R3 1055
4 TraesCS2B01G553900 chr2B 749177934 749183302 5368 True 306.000000 403 87.198000 767 2323 3 chr2B.!!$R4 1556
5 TraesCS2B01G553900 chr2A 745091076 745097279 6203 True 706.600000 2254 90.274600 635 2265 5 chr2A.!!$R1 1630
6 TraesCS2B01G553900 chr2A 745109745 745112550 2805 True 484.533333 710 88.638667 611 2324 3 chr2A.!!$R2 1713
7 TraesCS2B01G553900 chr2D 614811168 614812222 1054 True 519.266667 1441 96.331333 611 1689 3 chr2D.!!$R3 1078
8 TraesCS2B01G553900 chr2D 614804173 614805147 974 True 427.000000 593 86.329500 687 1689 2 chr2D.!!$R2 1002
9 TraesCS2B01G553900 chr2D 614819180 614819918 738 True 295.300000 523 87.721000 612 1368 2 chr2D.!!$R4 756
10 TraesCS2B01G553900 chr1B 450049968 450050592 624 False 965.000000 965 94.888000 1 612 1 chr1B.!!$F1 611
11 TraesCS2B01G553900 chr7B 625711153 625711778 625 True 961.000000 961 94.745000 1 613 1 chr7B.!!$R1 612
12 TraesCS2B01G553900 chr7B 709349139 709349761 622 True 900.000000 900 93.120000 1 610 1 chr7B.!!$R2 609
13 TraesCS2B01G553900 chr4B 604543206 604543828 622 True 961.000000 961 94.880000 1 610 1 chr4B.!!$R1 609
14 TraesCS2B01G553900 chr3B 98010344 98010967 623 True 952.000000 952 94.551000 1 610 1 chr3B.!!$R1 609
15 TraesCS2B01G553900 chr1D 355478548 355479164 616 False 778.000000 778 89.776000 1 610 1 chr1D.!!$F1 609
16 TraesCS2B01G553900 chr5D 385122476 385123103 627 True 649.000000 649 85.984000 1 609 1 chr5D.!!$R2 608
17 TraesCS2B01G553900 chr5B 554681238 554681865 627 True 612.000000 612 85.023000 1 610 1 chr5B.!!$R1 609


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
840 4287 0.162294 GCGCCGTGTATAAATACCGC 59.838 55.0 0.0 5.97 34.77 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1700 8197 0.306228 CAACGCACGGACATGTTCAA 59.694 50.0 4.68 0.0 0.0 2.69 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
568 629 3.824001 TTTCAAATGGGGGTCAGATCA 57.176 42.857 0.00 0.00 0.00 2.92
581 642 5.185635 GGGGTCAGATCATGAATTTGTTTGA 59.814 40.000 0.00 0.00 40.43 2.69
840 4287 0.162294 GCGCCGTGTATAAATACCGC 59.838 55.000 0.00 5.97 34.77 5.68
867 4315 1.730501 CGATGCCAACATGACTCACT 58.269 50.000 0.00 0.00 36.35 3.41
868 4316 1.662629 CGATGCCAACATGACTCACTC 59.337 52.381 0.00 0.00 36.35 3.51
869 4317 2.676176 CGATGCCAACATGACTCACTCT 60.676 50.000 0.00 0.00 36.35 3.24
870 4318 3.429410 CGATGCCAACATGACTCACTCTA 60.429 47.826 0.00 0.00 36.35 2.43
871 4319 3.319137 TGCCAACATGACTCACTCTAC 57.681 47.619 0.00 0.00 0.00 2.59
872 4320 2.028112 TGCCAACATGACTCACTCTACC 60.028 50.000 0.00 0.00 0.00 3.18
873 4321 2.234908 GCCAACATGACTCACTCTACCT 59.765 50.000 0.00 0.00 0.00 3.08
874 4322 3.307059 GCCAACATGACTCACTCTACCTT 60.307 47.826 0.00 0.00 0.00 3.50
875 4323 4.248859 CCAACATGACTCACTCTACCTTG 58.751 47.826 0.00 0.00 0.00 3.61
876 4324 4.262635 CCAACATGACTCACTCTACCTTGT 60.263 45.833 0.00 0.00 0.00 3.16
877 4325 4.792521 ACATGACTCACTCTACCTTGTC 57.207 45.455 0.00 0.00 0.00 3.18
878 4326 3.191581 ACATGACTCACTCTACCTTGTCG 59.808 47.826 0.00 0.00 0.00 4.35
879 4327 1.540267 TGACTCACTCTACCTTGTCGC 59.460 52.381 0.00 0.00 0.00 5.19
890 4338 1.301244 CTTGTCGCCACTCACAGCT 60.301 57.895 0.00 0.00 0.00 4.24
959 4417 1.402325 GCCGAAAGCAATACCACCAAC 60.402 52.381 0.00 0.00 42.97 3.77
1035 6111 4.779475 CAGCTCCTGGACGTGTTT 57.221 55.556 0.00 0.00 0.00 2.83
1104 6180 2.727798 CGACAAGGGTACGTAAACACAG 59.272 50.000 0.00 0.00 0.00 3.66
1253 6345 4.468689 GGAGGCTTTCCGGACGGG 62.469 72.222 1.83 0.00 35.91 5.28
1299 6391 1.424638 ATCTCCCGGTTGTATCAGGG 58.575 55.000 0.00 0.00 42.73 4.45
1325 6417 1.285078 AGAGGGCCAGGTCAATTAACC 59.715 52.381 6.18 0.00 39.80 2.85
1411 7566 1.523154 GCCTCAAAATGGTGTGCGGA 61.523 55.000 0.00 0.00 0.00 5.54
1412 7567 0.523072 CCTCAAAATGGTGTGCGGAG 59.477 55.000 0.00 0.00 0.00 4.63
1493 7722 3.886505 GGGGTTTATGTGTGTTGTTCTCA 59.113 43.478 0.00 0.00 0.00 3.27
1540 7796 6.837992 TGCTTGTTAATTTCTACCGATCAAC 58.162 36.000 0.00 0.00 0.00 3.18
1578 7834 5.121768 TCCAAGCTTACTTTCTACGAAATGC 59.878 40.000 0.00 0.00 32.29 3.56
1689 8186 5.125356 TGTGGTGAGGCTATCATTTATGTG 58.875 41.667 0.00 0.00 40.92 3.21
1691 8188 6.000219 GTGGTGAGGCTATCATTTATGTGAT 59.000 40.000 0.00 0.00 40.92 3.06
1696 8193 7.389884 GTGAGGCTATCATTTATGTGATGACAT 59.610 37.037 2.61 2.61 42.15 3.06
1715 10482 4.732784 ACATTAATTGAACATGTCCGTGC 58.267 39.130 0.00 0.00 0.00 5.34
1723 10490 1.725625 CATGTCCGTGCGTTGCAAC 60.726 57.895 19.89 19.89 41.47 4.17
1741 10508 3.066203 GCAACGAGAGAAAAACCTCCAAA 59.934 43.478 0.00 0.00 33.76 3.28
1742 10509 4.789802 GCAACGAGAGAAAAACCTCCAAAG 60.790 45.833 0.00 0.00 33.76 2.77
1780 10548 9.793252 CTTCATTCATTAATTCAGAAACCGAAT 57.207 29.630 0.00 0.00 34.56 3.34
1814 10582 1.281867 GGTTGATGGTGGAGGTGATGA 59.718 52.381 0.00 0.00 0.00 2.92
1815 10583 2.290896 GGTTGATGGTGGAGGTGATGAA 60.291 50.000 0.00 0.00 0.00 2.57
1862 10630 8.138712 ACTATCTGACTCCAAAATACTCGATTC 58.861 37.037 0.00 0.00 0.00 2.52
1867 10635 6.590292 TGACTCCAAAATACTCGATTCAGAAC 59.410 38.462 0.00 0.00 0.00 3.01
1876 10644 8.417780 AATACTCGATTCAGAACATTCAGAAG 57.582 34.615 5.79 0.00 36.38 2.85
1877 10645 4.629200 ACTCGATTCAGAACATTCAGAAGC 59.371 41.667 5.27 5.27 36.38 3.86
1888 10656 7.500227 CAGAACATTCAGAAGCCCAAGATAATA 59.500 37.037 0.00 0.00 0.00 0.98
1915 10683 7.519927 TGAGATGATTGGTGATGGAAATGATA 58.480 34.615 0.00 0.00 0.00 2.15
1940 10709 6.998074 AGCAATGGATACTCATTTTTATCCGA 59.002 34.615 3.75 0.00 44.80 4.55
1953 10722 8.026607 TCATTTTTATCCGATTCCAAAACACTC 58.973 33.333 0.00 0.00 0.00 3.51
1954 10723 7.519032 TTTTTATCCGATTCCAAAACACTCT 57.481 32.000 0.00 0.00 0.00 3.24
2007 10778 5.331902 CGGTTATCAAAATCGTCAGCAATT 58.668 37.500 0.00 0.00 0.00 2.32
2023 10794 6.968904 GTCAGCAATTGTCGATTCAATATTGT 59.031 34.615 14.97 0.00 37.09 2.71
2046 10817 9.959749 TTGTGATTCCTTTTCTACAATAACAAC 57.040 29.630 0.00 0.00 28.53 3.32
2050 10821 9.490663 GATTCCTTTTCTACAATAACAACATCG 57.509 33.333 0.00 0.00 0.00 3.84
2085 10856 9.403583 GTTAAACCTCCCATATTCAGATTGTTA 57.596 33.333 0.00 0.00 0.00 2.41
2115 10886 0.949105 CCGTGCACCCACTCAAGTAC 60.949 60.000 12.15 0.00 39.86 2.73
2172 10955 8.807581 GAAAGTTTTCTAACACAAATGGTGAAG 58.192 33.333 0.00 0.00 40.73 3.02
2226 11009 7.696755 TCATGATTATTTCAACATGAAGGACG 58.303 34.615 0.00 0.00 43.56 4.79
2244 11027 6.516478 AGGACGAACGAACTTACTAAAAAC 57.484 37.500 0.14 0.00 0.00 2.43
2246 11029 6.199719 AGGACGAACGAACTTACTAAAAACAG 59.800 38.462 0.14 0.00 0.00 3.16
2250 11033 9.034544 ACGAACGAACTTACTAAAAACAGTTAT 57.965 29.630 0.14 0.00 29.43 1.89
2299 11089 2.769663 TCCATAAATAGCACTCACCGGT 59.230 45.455 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
599 660 1.000283 TGCTACACGGGGCAAAATTTG 60.000 47.619 0.57 0.57 35.40 2.32
867 4315 0.601558 GTGAGTGGCGACAAGGTAGA 59.398 55.000 0.00 0.00 46.06 2.59
868 4316 0.317160 TGTGAGTGGCGACAAGGTAG 59.683 55.000 0.00 0.00 46.06 3.18
869 4317 0.317160 CTGTGAGTGGCGACAAGGTA 59.683 55.000 0.00 0.00 46.06 3.08
870 4318 1.069765 CTGTGAGTGGCGACAAGGT 59.930 57.895 0.00 0.00 46.06 3.50
871 4319 2.320587 GCTGTGAGTGGCGACAAGG 61.321 63.158 0.00 0.00 46.06 3.61
872 4320 1.301244 AGCTGTGAGTGGCGACAAG 60.301 57.895 0.00 0.00 46.06 3.16
873 4321 1.595109 CAGCTGTGAGTGGCGACAA 60.595 57.895 5.25 0.00 46.06 3.18
874 4322 2.029518 CAGCTGTGAGTGGCGACA 59.970 61.111 5.25 0.00 38.70 4.35
875 4323 1.735920 CTCAGCTGTGAGTGGCGAC 60.736 63.158 14.67 0.00 44.72 5.19
876 4324 2.653115 CTCAGCTGTGAGTGGCGA 59.347 61.111 14.67 0.00 44.72 5.54
890 4338 2.026915 TGAGGCTATTGCTTTCAGCTCA 60.027 45.455 0.00 0.00 42.97 4.26
896 4344 3.696051 TGGTGAATGAGGCTATTGCTTTC 59.304 43.478 0.00 0.00 39.59 2.62
941 4391 1.883275 TGGTTGGTGGTATTGCTTTCG 59.117 47.619 0.00 0.00 0.00 3.46
952 4410 0.392193 CTGAGCTAGCTGGTTGGTGG 60.392 60.000 24.99 0.00 0.00 4.61
1104 6180 0.248539 GTCATAGGAGTGTCCGCGTC 60.249 60.000 4.92 0.00 42.75 5.19
1253 6345 1.550976 ACCTGATCTCGACAACTTCCC 59.449 52.381 0.00 0.00 0.00 3.97
1325 6417 2.289320 GCTGGCTCTACATACCATCCAG 60.289 54.545 0.00 0.00 41.73 3.86
1411 7566 7.826690 AGAACATTGTAACAAACTGAAACACT 58.173 30.769 0.00 0.00 0.00 3.55
1412 7567 9.730420 ATAGAACATTGTAACAAACTGAAACAC 57.270 29.630 0.00 0.00 0.00 3.32
1493 7722 6.441274 CAAGTTCATCAAGTTACAAGCACAT 58.559 36.000 0.00 0.00 0.00 3.21
1540 7796 4.907879 AGCTTGGAGAGAAAACAAACAG 57.092 40.909 0.00 0.00 0.00 3.16
1586 7848 5.076182 TGTCTTTCCTTTCACCATGCATTA 58.924 37.500 0.00 0.00 0.00 1.90
1696 8193 2.809119 ACGCACGGACATGTTCAATTAA 59.191 40.909 4.68 0.00 0.00 1.40
1700 8197 0.306228 CAACGCACGGACATGTTCAA 59.694 50.000 4.68 0.00 0.00 2.69
1701 8198 1.938125 CAACGCACGGACATGTTCA 59.062 52.632 4.68 0.00 0.00 3.18
1702 8199 1.440353 GCAACGCACGGACATGTTC 60.440 57.895 0.00 0.00 0.00 3.18
1723 10490 3.740115 TCCTTTGGAGGTTTTTCTCTCG 58.260 45.455 0.00 0.00 43.97 4.04
1725 10492 7.437713 AAAATTCCTTTGGAGGTTTTTCTCT 57.562 32.000 0.00 0.00 43.97 3.10
1780 10548 8.498575 TCCACCATCAACCATCTTAATGTTATA 58.501 33.333 0.00 0.00 0.00 0.98
1786 10554 4.230502 ACCTCCACCATCAACCATCTTAAT 59.769 41.667 0.00 0.00 0.00 1.40
1835 10603 7.406031 TCGAGTATTTTGGAGTCAGATAGTT 57.594 36.000 0.00 0.00 0.00 2.24
1837 10605 8.138074 TGAATCGAGTATTTTGGAGTCAGATAG 58.862 37.037 0.00 0.00 30.97 2.08
1853 10621 5.807520 GCTTCTGAATGTTCTGAATCGAGTA 59.192 40.000 13.20 0.00 41.94 2.59
1862 10630 3.415212 TCTTGGGCTTCTGAATGTTCTG 58.585 45.455 0.00 0.00 0.00 3.02
1867 10635 8.400184 TCAATATTATCTTGGGCTTCTGAATG 57.600 34.615 0.00 0.00 0.00 2.67
1876 10644 7.395489 ACCAATCATCTCAATATTATCTTGGGC 59.605 37.037 0.00 0.00 34.99 5.36
1877 10645 8.737175 CACCAATCATCTCAATATTATCTTGGG 58.263 37.037 0.00 0.00 34.99 4.12
1888 10656 6.837048 TCATTTCCATCACCAATCATCTCAAT 59.163 34.615 0.00 0.00 0.00 2.57
1915 10683 6.998074 TCGGATAAAAATGAGTATCCATTGCT 59.002 34.615 9.70 0.00 44.14 3.91
1940 10709 9.918630 CATTTTCTGAATAGAGTGTTTTGGAAT 57.081 29.630 0.00 0.00 33.70 3.01
1974 10745 9.940166 GACGATTTTGATAACCGGTATTTAAAT 57.060 29.630 8.00 10.67 0.00 1.40
1983 10754 2.675844 TGCTGACGATTTTGATAACCGG 59.324 45.455 0.00 0.00 0.00 5.28
1984 10755 4.335082 TTGCTGACGATTTTGATAACCG 57.665 40.909 0.00 0.00 0.00 4.44
1998 10769 6.968904 ACAATATTGAATCGACAATTGCTGAC 59.031 34.615 22.16 0.00 40.36 3.51
2007 10778 7.864108 AAGGAATCACAATATTGAATCGACA 57.136 32.000 22.16 0.00 0.00 4.35
2046 10817 7.822658 TGGGAGGTTTAACTTTTATTTCGATG 58.177 34.615 0.00 0.00 0.00 3.84
2085 10856 3.590857 TGCACGGTGTTTGCGCAT 61.591 55.556 12.75 0.00 43.34 4.73
2150 10933 7.480810 AGACTTCACCATTTGTGTTAGAAAAC 58.519 34.615 0.00 0.00 45.61 2.43
2152 10935 8.740123 TTAGACTTCACCATTTGTGTTAGAAA 57.260 30.769 0.00 0.00 45.61 2.52
2159 10942 8.099364 AGTACATTTAGACTTCACCATTTGTG 57.901 34.615 0.00 0.00 46.88 3.33
2195 10978 9.825109 TTCATGTTGAAATAATCATGATGCATT 57.175 25.926 9.46 9.23 43.57 3.56
2198 10981 8.139350 TCCTTCATGTTGAAATAATCATGATGC 58.861 33.333 9.46 0.00 43.57 3.91
2214 10997 3.107642 AGTTCGTTCGTCCTTCATGTT 57.892 42.857 0.00 0.00 0.00 2.71
2271 11054 7.441157 CGGTGAGTGCTATTTATGGAAGAAATA 59.559 37.037 0.00 0.00 0.00 1.40
2274 11057 5.116180 CGGTGAGTGCTATTTATGGAAGAA 58.884 41.667 0.00 0.00 0.00 2.52
2275 11058 4.442893 CCGGTGAGTGCTATTTATGGAAGA 60.443 45.833 0.00 0.00 0.00 2.87
2276 11059 3.809832 CCGGTGAGTGCTATTTATGGAAG 59.190 47.826 0.00 0.00 0.00 3.46
2277 11060 3.199071 ACCGGTGAGTGCTATTTATGGAA 59.801 43.478 6.12 0.00 0.00 3.53
2278 11061 2.769663 ACCGGTGAGTGCTATTTATGGA 59.230 45.455 6.12 0.00 0.00 3.41
2279 11062 2.872245 CACCGGTGAGTGCTATTTATGG 59.128 50.000 31.31 0.00 0.00 2.74
2280 11063 3.792401 TCACCGGTGAGTGCTATTTATG 58.208 45.455 33.23 2.55 37.68 1.90
2299 11089 4.202182 ACGTTTTCAGTTACCTAGCACTCA 60.202 41.667 0.00 0.00 0.00 3.41



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.