Multiple sequence alignment - TraesCS2B01G551800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G551800 chr2B 100.000 2339 0 0 1 2339 747856235 747853897 0.000000e+00 4320.0
1 TraesCS2B01G551800 chr2B 86.102 626 60 10 841 1440 747786587 747785963 0.000000e+00 649.0
2 TraesCS2B01G551800 chr2B 86.379 602 64 11 851 1440 747821662 747821067 1.960000e-180 641.0
3 TraesCS2B01G551800 chr2B 84.277 159 12 9 1463 1619 747821079 747820932 2.420000e-30 143.0
4 TraesCS2B01G551800 chr2B 90.722 97 8 1 591 686 403101600 403101696 6.780000e-26 128.0
5 TraesCS2B01G551800 chr2B 93.103 87 6 0 600 686 690784823 690784737 6.780000e-26 128.0
6 TraesCS2B01G551800 chr2B 84.337 83 12 1 1998 2080 747818262 747818181 1.930000e-11 80.5
7 TraesCS2B01G551800 chr2A 88.584 911 64 18 747 1646 744635860 744634979 0.000000e+00 1070.0
8 TraesCS2B01G551800 chr2A 91.103 562 35 8 902 1450 742306488 742305929 0.000000e+00 747.0
9 TraesCS2B01G551800 chr2A 82.759 638 55 26 841 1449 744616384 744615773 3.450000e-143 518.0
10 TraesCS2B01G551800 chr2A 88.742 151 15 2 1470 1619 742305940 742305791 1.430000e-42 183.0
11 TraesCS2B01G551800 chr2A 82.222 180 29 3 2076 2254 744617032 744616855 4.030000e-33 152.0
12 TraesCS2B01G551800 chr2A 91.071 112 8 2 1531 1641 744624844 744624734 1.450000e-32 150.0
13 TraesCS2B01G551800 chr2D 92.461 703 33 4 747 1445 612983059 612982373 0.000000e+00 987.0
14 TraesCS2B01G551800 chr2D 91.519 566 33 7 890 1440 612697221 612696656 0.000000e+00 765.0
15 TraesCS2B01G551800 chr2D 91.956 547 35 3 902 1440 609639138 609639683 0.000000e+00 758.0
16 TraesCS2B01G551800 chr2D 90.637 502 46 1 939 1440 612760006 612759506 0.000000e+00 665.0
17 TraesCS2B01G551800 chr2D 83.968 630 58 16 851 1450 612935623 612935007 4.360000e-157 564.0
18 TraesCS2B01G551800 chr2D 83.360 631 62 14 841 1440 612455564 612454946 5.680000e-151 544.0
19 TraesCS2B01G551800 chr2D 86.468 436 50 6 1463 1890 612759518 612759084 9.790000e-129 470.0
20 TraesCS2B01G551800 chr2D 83.982 437 59 7 1910 2339 612758975 612758543 2.160000e-110 409.0
21 TraesCS2B01G551800 chr2D 83.333 444 57 10 1910 2339 612979767 612979327 6.060000e-106 394.0
22 TraesCS2B01G551800 chr2D 87.458 295 23 9 1463 1746 612696668 612696377 6.230000e-86 327.0
23 TraesCS2B01G551800 chr2D 87.549 257 20 7 1463 1719 612982386 612982142 1.060000e-73 287.0
24 TraesCS2B01G551800 chr2D 81.818 330 48 6 2010 2339 609637136 609637453 1.380000e-67 267.0
25 TraesCS2B01G551800 chr2D 86.592 179 19 3 1910 2084 612454324 612454147 2.370000e-45 193.0
26 TraesCS2B01G551800 chr2D 92.086 139 8 1 747 885 612697473 612697338 2.370000e-45 193.0
27 TraesCS2B01G551800 chr2D 83.258 221 25 5 1673 1890 612934782 612934571 2.370000e-45 193.0
28 TraesCS2B01G551800 chr2D 85.475 179 19 4 1507 1679 612454921 612454744 1.850000e-41 180.0
29 TraesCS2B01G551800 chr2D 84.118 170 27 0 1721 1890 612454602 612454433 5.170000e-37 165.0
30 TraesCS2B01G551800 chr2D 85.517 145 19 2 1470 1614 609639680 609639822 1.450000e-32 150.0
31 TraesCS2B01G551800 chr2D 89.524 105 7 1 841 941 612794597 612794493 1.890000e-26 130.0
32 TraesCS2B01G551800 chr2D 87.500 96 8 2 1907 1998 609636391 609636486 8.840000e-20 108.0
33 TraesCS2B01G551800 chr2D 100.000 28 0 0 2072 2099 609637032 609637059 4.000000e-03 52.8
34 TraesCS2B01G551800 chr3B 84.225 355 52 4 31 383 659717740 659717388 2.230000e-90 342.0
35 TraesCS2B01G551800 chr3B 83.871 341 48 7 46 383 659609035 659608699 3.750000e-83 318.0
36 TraesCS2B01G551800 chr3B 93.902 82 5 0 600 681 448233036 448233117 8.780000e-25 124.0
37 TraesCS2B01G551800 chr3B 90.909 88 8 0 598 685 611178530 611178443 4.080000e-23 119.0
38 TraesCS2B01G551800 chr5D 83.286 353 57 2 30 381 532757770 532757419 8.060000e-85 324.0
39 TraesCS2B01G551800 chr5D 81.921 354 61 3 30 381 371631514 371631162 1.760000e-76 296.0
40 TraesCS2B01G551800 chr7B 82.353 357 59 4 30 383 457782794 457783149 8.120000e-80 307.0
41 TraesCS2B01G551800 chr7B 84.536 291 42 3 31 319 181356292 181356581 3.800000e-73 285.0
42 TraesCS2B01G551800 chr7B 81.408 355 59 7 30 381 688139517 688139167 1.370000e-72 283.0
43 TraesCS2B01G551800 chr7B 93.902 82 5 0 600 681 604367365 604367284 8.780000e-25 124.0
44 TraesCS2B01G551800 chr3D 81.006 358 65 2 30 384 303792067 303792424 4.920000e-72 281.0
45 TraesCS2B01G551800 chr7D 80.899 356 55 5 30 381 108063324 108062978 3.830000e-68 268.0
46 TraesCS2B01G551800 chr6B 94.318 88 5 0 599 686 661335973 661336060 4.050000e-28 135.0
47 TraesCS2B01G551800 chr5B 94.253 87 5 0 599 685 37699958 37700044 1.460000e-27 134.0
48 TraesCS2B01G551800 chr1A 92.222 90 7 0 597 686 398058102 398058013 6.780000e-26 128.0
49 TraesCS2B01G551800 chr4D 91.111 90 8 0 597 686 215469208 215469119 3.160000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G551800 chr2B 747853897 747856235 2338 True 4320.000000 4320 100.000000 1 2339 1 chr2B.!!$R3 2338
1 TraesCS2B01G551800 chr2B 747785963 747786587 624 True 649.000000 649 86.102000 841 1440 1 chr2B.!!$R2 599
2 TraesCS2B01G551800 chr2B 747818181 747821662 3481 True 288.166667 641 84.997667 851 2080 3 chr2B.!!$R4 1229
3 TraesCS2B01G551800 chr2A 744634979 744635860 881 True 1070.000000 1070 88.584000 747 1646 1 chr2A.!!$R2 899
4 TraesCS2B01G551800 chr2A 742305791 742306488 697 True 465.000000 747 89.922500 902 1619 2 chr2A.!!$R3 717
5 TraesCS2B01G551800 chr2A 744615773 744617032 1259 True 335.000000 518 82.490500 841 2254 2 chr2A.!!$R4 1413
6 TraesCS2B01G551800 chr2D 612979327 612983059 3732 True 556.000000 987 87.781000 747 2339 3 chr2D.!!$R6 1592
7 TraesCS2B01G551800 chr2D 612758543 612760006 1463 True 514.666667 665 87.029000 939 2339 3 chr2D.!!$R4 1400
8 TraesCS2B01G551800 chr2D 612696377 612697473 1096 True 428.333333 765 90.354333 747 1746 3 chr2D.!!$R3 999
9 TraesCS2B01G551800 chr2D 612934571 612935623 1052 True 378.500000 564 83.613000 851 1890 2 chr2D.!!$R5 1039
10 TraesCS2B01G551800 chr2D 612454147 612455564 1417 True 270.500000 544 84.886250 841 2084 4 chr2D.!!$R2 1243
11 TraesCS2B01G551800 chr2D 609636391 609639822 3431 False 267.160000 758 89.358200 902 2339 5 chr2D.!!$F1 1437

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.103876 AGGAGGAGGAAGGGTTTGGT 60.104 55.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2145 7741 0.037326 CCTGCAGGTAGCTTTCGTCA 60.037 55.0 25.53 0.0 45.94 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.926561 TGATCTTCGCATCCTTGACG 58.073 50.000 0.00 0.00 0.00 4.35
24 25 0.888619 TCTTCGCATCCTTGACGTCT 59.111 50.000 17.92 0.00 0.00 4.18
25 26 2.089201 TCTTCGCATCCTTGACGTCTA 58.911 47.619 17.92 8.49 0.00 2.59
26 27 2.159421 TCTTCGCATCCTTGACGTCTAC 60.159 50.000 17.92 0.00 0.00 2.59
34 35 0.179171 CTTGACGTCTACGCCGACAT 60.179 55.000 17.92 0.00 44.43 3.06
37 38 0.933097 GACGTCTACGCCGACATCTA 59.067 55.000 8.70 0.00 44.43 1.98
38 39 0.654683 ACGTCTACGCCGACATCTAC 59.345 55.000 1.74 0.00 44.43 2.59
39 40 0.654160 CGTCTACGCCGACATCTACA 59.346 55.000 0.00 0.00 33.54 2.74
41 42 1.019673 TCTACGCCGACATCTACACC 58.980 55.000 0.00 0.00 0.00 4.16
49 50 2.351835 CCGACATCTACACCGATGGATC 60.352 54.545 5.85 0.00 43.92 3.36
65 66 2.758327 TCGGGACCGATGGTGAGG 60.758 66.667 9.76 0.00 44.01 3.86
66 67 2.758327 CGGGACCGATGGTGAGGA 60.758 66.667 4.40 0.00 42.83 3.71
69 70 1.447643 GGACCGATGGTGAGGATGG 59.552 63.158 0.00 0.00 35.25 3.51
71 72 2.044806 GACCGATGGTGAGGATGGGG 62.045 65.000 0.00 0.00 35.25 4.96
72 73 1.766059 CCGATGGTGAGGATGGGGA 60.766 63.158 0.00 0.00 0.00 4.81
76 77 2.408565 GATGGTGAGGATGGGGAGTAA 58.591 52.381 0.00 0.00 0.00 2.24
78 79 1.132500 GGTGAGGATGGGGAGTAAGG 58.868 60.000 0.00 0.00 0.00 2.69
80 81 0.722676 TGAGGATGGGGAGTAAGGGT 59.277 55.000 0.00 0.00 0.00 4.34
81 82 1.132500 GAGGATGGGGAGTAAGGGTG 58.868 60.000 0.00 0.00 0.00 4.61
82 83 0.327576 AGGATGGGGAGTAAGGGTGG 60.328 60.000 0.00 0.00 0.00 4.61
83 84 1.532238 GATGGGGAGTAAGGGTGGC 59.468 63.158 0.00 0.00 0.00 5.01
86 87 2.686106 GGGAGTAAGGGTGGCGGA 60.686 66.667 0.00 0.00 0.00 5.54
87 88 2.582978 GGAGTAAGGGTGGCGGAC 59.417 66.667 0.00 0.00 0.00 4.79
90 91 3.698820 GTAAGGGTGGCGGACGGT 61.699 66.667 0.00 0.00 0.00 4.83
91 92 2.037049 TAAGGGTGGCGGACGGTA 59.963 61.111 0.00 0.00 0.00 4.02
92 93 1.608918 TAAGGGTGGCGGACGGTAA 60.609 57.895 0.00 0.00 0.00 2.85
93 94 1.606885 TAAGGGTGGCGGACGGTAAG 61.607 60.000 0.00 0.00 0.00 2.34
95 96 4.462280 GGTGGCGGACGGTAAGGG 62.462 72.222 0.00 0.00 0.00 3.95
100 101 4.203076 CGGACGGTAAGGGCTCGG 62.203 72.222 0.00 0.00 0.00 4.63
102 103 4.525949 GACGGTAAGGGCTCGGGC 62.526 72.222 0.00 0.00 37.82 6.13
114 115 3.546714 CTCGGGCGTGGGAAAGGTT 62.547 63.158 0.00 0.00 0.00 3.50
116 117 2.989253 GGGCGTGGGAAAGGTTGG 60.989 66.667 0.00 0.00 0.00 3.77
117 118 2.114411 GGCGTGGGAAAGGTTGGA 59.886 61.111 0.00 0.00 0.00 3.53
118 119 1.971695 GGCGTGGGAAAGGTTGGAG 60.972 63.158 0.00 0.00 0.00 3.86
119 120 1.971695 GCGTGGGAAAGGTTGGAGG 60.972 63.158 0.00 0.00 0.00 4.30
120 121 1.303317 CGTGGGAAAGGTTGGAGGG 60.303 63.158 0.00 0.00 0.00 4.30
122 123 2.088096 TGGGAAAGGTTGGAGGGCA 61.088 57.895 0.00 0.00 0.00 5.36
123 124 1.304464 GGGAAAGGTTGGAGGGCAG 60.304 63.158 0.00 0.00 0.00 4.85
124 125 1.979155 GGAAAGGTTGGAGGGCAGC 60.979 63.158 0.00 0.00 0.00 5.25
125 126 2.282462 AAAGGTTGGAGGGCAGCG 60.282 61.111 0.00 0.00 0.00 5.18
126 127 3.133365 AAAGGTTGGAGGGCAGCGT 62.133 57.895 0.00 0.00 0.00 5.07
127 128 3.850098 AAGGTTGGAGGGCAGCGTG 62.850 63.158 0.00 0.00 0.00 5.34
128 129 4.329545 GGTTGGAGGGCAGCGTGA 62.330 66.667 0.00 0.00 0.00 4.35
130 131 4.020617 TTGGAGGGCAGCGTGAGG 62.021 66.667 0.00 0.00 0.00 3.86
134 135 4.704103 AGGGCAGCGTGAGGAGGA 62.704 66.667 0.00 0.00 0.00 3.71
135 136 4.154347 GGGCAGCGTGAGGAGGAG 62.154 72.222 0.00 0.00 0.00 3.69
136 137 4.154347 GGCAGCGTGAGGAGGAGG 62.154 72.222 0.00 0.00 0.00 4.30
139 140 1.515020 CAGCGTGAGGAGGAGGAAG 59.485 63.158 0.00 0.00 0.00 3.46
141 142 2.726351 GCGTGAGGAGGAGGAAGGG 61.726 68.421 0.00 0.00 0.00 3.95
143 144 0.905337 CGTGAGGAGGAGGAAGGGTT 60.905 60.000 0.00 0.00 0.00 4.11
144 145 1.363246 GTGAGGAGGAGGAAGGGTTT 58.637 55.000 0.00 0.00 0.00 3.27
145 146 1.003696 GTGAGGAGGAGGAAGGGTTTG 59.996 57.143 0.00 0.00 0.00 2.93
147 148 0.103876 AGGAGGAGGAAGGGTTTGGT 60.104 55.000 0.00 0.00 0.00 3.67
150 151 0.402861 AGGAGGAAGGGTTTGGTGGA 60.403 55.000 0.00 0.00 0.00 4.02
151 152 0.704664 GGAGGAAGGGTTTGGTGGAT 59.295 55.000 0.00 0.00 0.00 3.41
154 155 3.245479 GGAGGAAGGGTTTGGTGGATTAA 60.245 47.826 0.00 0.00 0.00 1.40
156 157 3.401342 AGGAAGGGTTTGGTGGATTAAGT 59.599 43.478 0.00 0.00 0.00 2.24
157 158 3.509967 GGAAGGGTTTGGTGGATTAAGTG 59.490 47.826 0.00 0.00 0.00 3.16
158 159 2.525368 AGGGTTTGGTGGATTAAGTGC 58.475 47.619 0.00 0.00 0.00 4.40
160 161 2.630580 GGGTTTGGTGGATTAAGTGCAA 59.369 45.455 0.00 0.00 0.00 4.08
162 163 4.262851 GGGTTTGGTGGATTAAGTGCAATT 60.263 41.667 4.23 4.23 0.00 2.32
163 164 5.304778 GGTTTGGTGGATTAAGTGCAATTT 58.695 37.500 4.05 0.00 0.00 1.82
164 165 5.179182 GGTTTGGTGGATTAAGTGCAATTTG 59.821 40.000 4.05 0.00 0.00 2.32
165 166 3.924144 TGGTGGATTAAGTGCAATTTGC 58.076 40.909 14.49 14.49 45.29 3.68
175 176 2.753369 GCAATTTGCAATGGGGTCG 58.247 52.632 16.35 0.00 44.26 4.79
176 177 0.740516 GCAATTTGCAATGGGGTCGG 60.741 55.000 16.35 0.00 44.26 4.79
179 180 0.607620 ATTTGCAATGGGGTCGGTTG 59.392 50.000 0.00 0.00 0.00 3.77
180 181 0.757188 TTTGCAATGGGGTCGGTTGT 60.757 50.000 0.00 0.00 0.00 3.32
181 182 1.175983 TTGCAATGGGGTCGGTTGTC 61.176 55.000 0.00 0.00 0.00 3.18
182 183 1.602323 GCAATGGGGTCGGTTGTCA 60.602 57.895 0.00 0.00 0.00 3.58
183 184 0.965363 GCAATGGGGTCGGTTGTCAT 60.965 55.000 0.00 0.00 0.00 3.06
184 185 0.810648 CAATGGGGTCGGTTGTCATG 59.189 55.000 0.00 0.00 0.00 3.07
185 186 0.404040 AATGGGGTCGGTTGTCATGT 59.596 50.000 0.00 0.00 0.00 3.21
187 188 0.322322 TGGGGTCGGTTGTCATGTAC 59.678 55.000 0.00 0.00 0.00 2.90
188 189 0.738412 GGGGTCGGTTGTCATGTACG 60.738 60.000 0.00 0.00 0.00 3.67
217 218 3.717294 GCACCCGGACACCTCCAT 61.717 66.667 0.73 0.00 36.12 3.41
219 220 1.696097 GCACCCGGACACCTCCATAT 61.696 60.000 0.73 0.00 36.12 1.78
220 221 0.393077 CACCCGGACACCTCCATATC 59.607 60.000 0.73 0.00 36.12 1.63
224 225 1.371558 GGACACCTCCATATCCGCC 59.628 63.158 0.00 0.00 36.42 6.13
227 228 2.146724 CACCTCCATATCCGCCCCA 61.147 63.158 0.00 0.00 0.00 4.96
231 232 1.846439 CCTCCATATCCGCCCCATATT 59.154 52.381 0.00 0.00 0.00 1.28
233 234 3.282021 CTCCATATCCGCCCCATATTTG 58.718 50.000 0.00 0.00 0.00 2.32
248 249 2.986534 ATTTGGGCTGGATATGAGGG 57.013 50.000 0.00 0.00 0.00 4.30
249 250 0.852842 TTTGGGCTGGATATGAGGGG 59.147 55.000 0.00 0.00 0.00 4.79
250 251 0.328450 TTGGGCTGGATATGAGGGGT 60.328 55.000 0.00 0.00 0.00 4.95
251 252 1.061905 TGGGCTGGATATGAGGGGTG 61.062 60.000 0.00 0.00 0.00 4.61
252 253 1.073897 GGCTGGATATGAGGGGTGC 59.926 63.158 0.00 0.00 0.00 5.01
253 254 1.073897 GCTGGATATGAGGGGTGCC 59.926 63.158 0.00 0.00 0.00 5.01
255 256 2.116983 CTGGATATGAGGGGTGCCGG 62.117 65.000 0.00 0.00 0.00 6.13
256 257 2.147387 GGATATGAGGGGTGCCGGT 61.147 63.158 1.90 0.00 0.00 5.28
257 258 1.371558 GATATGAGGGGTGCCGGTC 59.628 63.158 1.90 0.00 0.00 4.79
258 259 1.383943 ATATGAGGGGTGCCGGTCA 60.384 57.895 1.90 0.00 0.00 4.02
259 260 1.410850 ATATGAGGGGTGCCGGTCAG 61.411 60.000 1.90 0.00 0.00 3.51
272 273 2.361104 GTCAGCCCGGGCATTTGA 60.361 61.111 45.13 35.64 44.88 2.69
273 274 2.045045 TCAGCCCGGGCATTTGAG 60.045 61.111 45.13 26.22 44.88 3.02
274 275 3.142838 CAGCCCGGGCATTTGAGG 61.143 66.667 45.13 21.47 44.88 3.86
281 282 3.376546 GGCATTTGAGGCCCGTTT 58.623 55.556 0.00 0.00 45.87 3.60
282 283 2.573920 GGCATTTGAGGCCCGTTTA 58.426 52.632 0.00 0.00 45.87 2.01
285 286 1.135112 GCATTTGAGGCCCGTTTAAGG 60.135 52.381 0.00 0.00 0.00 2.69
286 287 2.442413 CATTTGAGGCCCGTTTAAGGA 58.558 47.619 0.00 0.00 0.00 3.36
288 289 1.061546 TTGAGGCCCGTTTAAGGAGT 58.938 50.000 0.00 0.00 0.00 3.85
289 290 0.611714 TGAGGCCCGTTTAAGGAGTC 59.388 55.000 0.00 0.00 0.00 3.36
290 291 0.107800 GAGGCCCGTTTAAGGAGTCC 60.108 60.000 0.00 0.00 0.00 3.85
294 295 0.893447 CCCGTTTAAGGAGTCCGTCT 59.107 55.000 0.00 0.00 0.00 4.18
295 296 1.403780 CCCGTTTAAGGAGTCCGTCTG 60.404 57.143 0.00 0.00 0.00 3.51
296 297 1.403780 CCGTTTAAGGAGTCCGTCTGG 60.404 57.143 0.00 0.00 0.00 3.86
298 299 1.622312 GTTTAAGGAGTCCGTCTGGGT 59.378 52.381 0.00 0.00 37.00 4.51
299 300 1.553706 TTAAGGAGTCCGTCTGGGTC 58.446 55.000 0.00 0.00 37.00 4.46
300 301 0.406750 TAAGGAGTCCGTCTGGGTCA 59.593 55.000 0.00 0.00 37.00 4.02
301 302 0.471211 AAGGAGTCCGTCTGGGTCAA 60.471 55.000 2.76 0.00 37.00 3.18
302 303 0.471211 AGGAGTCCGTCTGGGTCAAA 60.471 55.000 2.76 0.00 37.00 2.69
303 304 0.613777 GGAGTCCGTCTGGGTCAAAT 59.386 55.000 0.00 0.00 37.00 2.32
304 305 1.003233 GGAGTCCGTCTGGGTCAAATT 59.997 52.381 0.00 0.00 37.00 1.82
306 307 3.146847 GAGTCCGTCTGGGTCAAATTTT 58.853 45.455 0.00 0.00 37.00 1.82
308 309 2.882137 GTCCGTCTGGGTCAAATTTTCA 59.118 45.455 0.00 0.00 37.00 2.69
309 310 3.506067 GTCCGTCTGGGTCAAATTTTCAT 59.494 43.478 0.00 0.00 37.00 2.57
318 319 4.497473 GTCAAATTTTCATGACCGGTCA 57.503 40.909 37.79 37.79 44.59 4.02
319 320 4.865776 GTCAAATTTTCATGACCGGTCAA 58.134 39.130 39.04 23.89 43.58 3.18
320 321 5.469479 GTCAAATTTTCATGACCGGTCAAT 58.531 37.500 39.04 25.03 43.58 2.57
321 322 5.345741 GTCAAATTTTCATGACCGGTCAATG 59.654 40.000 39.04 32.04 43.58 2.82
322 323 5.242615 TCAAATTTTCATGACCGGTCAATGA 59.757 36.000 39.04 33.44 43.58 2.57
323 324 4.701956 ATTTTCATGACCGGTCAATGAC 57.298 40.909 39.04 11.84 43.58 3.06
333 334 0.526211 GGTCAATGACCGAAAAGCCC 59.474 55.000 17.46 0.00 43.14 5.19
335 336 1.154035 CAATGACCGAAAAGCCCGC 60.154 57.895 0.00 0.00 0.00 6.13
336 337 2.340328 AATGACCGAAAAGCCCGCC 61.340 57.895 0.00 0.00 0.00 6.13
350 351 4.944372 CGCCCGGCCGTATGAGAC 62.944 72.222 26.12 0.00 0.00 3.36
362 363 1.593006 GTATGAGACGGATTTGTGGCG 59.407 52.381 0.00 0.00 0.00 5.69
363 364 1.369091 ATGAGACGGATTTGTGGCGC 61.369 55.000 0.00 0.00 0.00 6.53
364 365 2.746277 AGACGGATTTGTGGCGCC 60.746 61.111 22.73 22.73 0.00 6.53
365 366 3.810896 GACGGATTTGTGGCGCCC 61.811 66.667 26.77 16.24 0.00 6.13
370 371 3.625082 GATTTGTGGCGCCCGGTTG 62.625 63.158 26.77 0.00 0.00 3.77
373 374 4.690719 TGTGGCGCCCGGTTGTAG 62.691 66.667 26.77 0.00 0.00 2.74
374 375 4.382320 GTGGCGCCCGGTTGTAGA 62.382 66.667 26.77 0.00 0.00 2.59
375 376 3.395702 TGGCGCCCGGTTGTAGAT 61.396 61.111 26.77 0.00 0.00 1.98
378 379 1.227556 GCGCCCGGTTGTAGATGAT 60.228 57.895 0.00 0.00 0.00 2.45
379 380 1.222115 GCGCCCGGTTGTAGATGATC 61.222 60.000 0.00 0.00 0.00 2.92
380 381 0.389391 CGCCCGGTTGTAGATGATCT 59.611 55.000 0.00 0.00 0.00 2.75
381 382 1.202533 CGCCCGGTTGTAGATGATCTT 60.203 52.381 0.00 0.00 0.00 2.40
382 383 2.035449 CGCCCGGTTGTAGATGATCTTA 59.965 50.000 0.00 0.00 0.00 2.10
383 384 3.654414 GCCCGGTTGTAGATGATCTTAG 58.346 50.000 0.00 0.00 0.00 2.18
384 385 3.654414 CCCGGTTGTAGATGATCTTAGC 58.346 50.000 0.00 0.00 0.00 3.09
385 386 3.555168 CCCGGTTGTAGATGATCTTAGCC 60.555 52.174 0.00 1.44 0.00 3.93
386 387 3.309388 CGGTTGTAGATGATCTTAGCCG 58.691 50.000 15.83 15.83 33.09 5.52
387 388 3.004419 CGGTTGTAGATGATCTTAGCCGA 59.996 47.826 21.26 0.00 37.94 5.54
389 390 4.299978 GTTGTAGATGATCTTAGCCGACC 58.700 47.826 0.00 0.00 0.00 4.79
390 391 3.833732 TGTAGATGATCTTAGCCGACCT 58.166 45.455 0.00 0.00 0.00 3.85
392 393 5.382616 TGTAGATGATCTTAGCCGACCTTA 58.617 41.667 0.00 0.00 0.00 2.69
395 396 4.835615 AGATGATCTTAGCCGACCTTATGT 59.164 41.667 0.00 0.00 0.00 2.29
396 397 4.322080 TGATCTTAGCCGACCTTATGTG 57.678 45.455 0.00 0.00 0.00 3.21
397 398 3.704566 TGATCTTAGCCGACCTTATGTGT 59.295 43.478 0.00 0.00 0.00 3.72
398 399 3.520290 TCTTAGCCGACCTTATGTGTG 57.480 47.619 0.00 0.00 0.00 3.82
399 400 2.829720 TCTTAGCCGACCTTATGTGTGT 59.170 45.455 0.00 0.00 0.00 3.72
400 401 3.259876 TCTTAGCCGACCTTATGTGTGTT 59.740 43.478 0.00 0.00 0.00 3.32
401 402 2.094762 AGCCGACCTTATGTGTGTTC 57.905 50.000 0.00 0.00 0.00 3.18
403 404 1.732259 GCCGACCTTATGTGTGTTCTG 59.268 52.381 0.00 0.00 0.00 3.02
405 406 2.993899 CCGACCTTATGTGTGTTCTGTC 59.006 50.000 0.00 0.00 0.00 3.51
407 408 4.082408 CCGACCTTATGTGTGTTCTGTCTA 60.082 45.833 0.00 0.00 0.00 2.59
408 409 5.096169 CGACCTTATGTGTGTTCTGTCTAG 58.904 45.833 0.00 0.00 0.00 2.43
409 410 4.822026 ACCTTATGTGTGTTCTGTCTAGC 58.178 43.478 0.00 0.00 0.00 3.42
410 411 4.528596 ACCTTATGTGTGTTCTGTCTAGCT 59.471 41.667 0.00 0.00 0.00 3.32
411 412 4.867047 CCTTATGTGTGTTCTGTCTAGCTG 59.133 45.833 0.00 0.00 0.00 4.24
412 413 2.820059 TGTGTGTTCTGTCTAGCTGG 57.180 50.000 0.00 0.00 0.00 4.85
414 415 1.618837 GTGTGTTCTGTCTAGCTGGGA 59.381 52.381 0.00 0.00 0.00 4.37
415 416 2.234908 GTGTGTTCTGTCTAGCTGGGAT 59.765 50.000 0.00 0.00 0.00 3.85
416 417 2.906389 TGTGTTCTGTCTAGCTGGGATT 59.094 45.455 0.00 0.00 0.00 3.01
417 418 3.265791 GTGTTCTGTCTAGCTGGGATTG 58.734 50.000 0.00 0.00 0.00 2.67
421 422 5.189736 TGTTCTGTCTAGCTGGGATTGTATT 59.810 40.000 0.00 0.00 0.00 1.89
422 423 5.282055 TCTGTCTAGCTGGGATTGTATTG 57.718 43.478 0.00 0.00 0.00 1.90
424 425 5.604231 TCTGTCTAGCTGGGATTGTATTGAT 59.396 40.000 0.00 0.00 0.00 2.57
425 426 5.614308 TGTCTAGCTGGGATTGTATTGATG 58.386 41.667 0.00 0.00 0.00 3.07
426 427 5.366477 TGTCTAGCTGGGATTGTATTGATGA 59.634 40.000 0.00 0.00 0.00 2.92
427 428 6.126796 TGTCTAGCTGGGATTGTATTGATGAA 60.127 38.462 0.00 0.00 0.00 2.57
428 429 6.939163 GTCTAGCTGGGATTGTATTGATGAAT 59.061 38.462 0.00 0.00 0.00 2.57
429 430 6.938596 TCTAGCTGGGATTGTATTGATGAATG 59.061 38.462 0.00 0.00 0.00 2.67
432 433 5.279306 GCTGGGATTGTATTGATGAATGCAT 60.279 40.000 0.00 0.00 34.57 3.96
434 435 5.011227 TGGGATTGTATTGATGAATGCATGG 59.989 40.000 0.00 0.00 34.57 3.66
435 436 5.011329 GGGATTGTATTGATGAATGCATGGT 59.989 40.000 0.00 0.00 34.57 3.55
437 438 4.310357 TGTATTGATGAATGCATGGTGC 57.690 40.909 0.00 0.00 45.29 5.01
446 447 2.738521 GCATGGTGCGACGTGACT 60.739 61.111 0.00 0.00 31.71 3.41
447 448 2.730672 GCATGGTGCGACGTGACTC 61.731 63.158 0.00 0.00 31.71 3.36
467 468 2.282180 GCGTGGGGCAGGAAGAAA 60.282 61.111 0.00 0.00 42.87 2.52
468 469 1.901464 GCGTGGGGCAGGAAGAAAA 60.901 57.895 0.00 0.00 42.87 2.29
469 470 1.866853 GCGTGGGGCAGGAAGAAAAG 61.867 60.000 0.00 0.00 42.87 2.27
471 472 1.271163 CGTGGGGCAGGAAGAAAAGTA 60.271 52.381 0.00 0.00 0.00 2.24
472 473 2.618045 CGTGGGGCAGGAAGAAAAGTAT 60.618 50.000 0.00 0.00 0.00 2.12
473 474 3.370103 CGTGGGGCAGGAAGAAAAGTATA 60.370 47.826 0.00 0.00 0.00 1.47
474 475 4.200092 GTGGGGCAGGAAGAAAAGTATAG 58.800 47.826 0.00 0.00 0.00 1.31
475 476 3.202151 TGGGGCAGGAAGAAAAGTATAGG 59.798 47.826 0.00 0.00 0.00 2.57
476 477 3.202373 GGGGCAGGAAGAAAAGTATAGGT 59.798 47.826 0.00 0.00 0.00 3.08
477 478 4.325109 GGGGCAGGAAGAAAAGTATAGGTT 60.325 45.833 0.00 0.00 0.00 3.50
478 479 4.882427 GGGCAGGAAGAAAAGTATAGGTTC 59.118 45.833 0.00 0.00 0.00 3.62
479 480 5.497474 GGCAGGAAGAAAAGTATAGGTTCA 58.503 41.667 0.00 0.00 0.00 3.18
480 481 6.122964 GGCAGGAAGAAAAGTATAGGTTCAT 58.877 40.000 0.00 0.00 0.00 2.57
481 482 7.280356 GGCAGGAAGAAAAGTATAGGTTCATA 58.720 38.462 0.00 0.00 0.00 2.15
482 483 7.442666 GGCAGGAAGAAAAGTATAGGTTCATAG 59.557 40.741 0.00 0.00 0.00 2.23
483 484 8.204836 GCAGGAAGAAAAGTATAGGTTCATAGA 58.795 37.037 0.00 0.00 0.00 1.98
494 495 7.958583 AGTATAGGTTCATAGATGGATGTTCCT 59.041 37.037 0.00 0.00 37.46 3.36
495 496 5.301835 AGGTTCATAGATGGATGTTCCTG 57.698 43.478 0.00 0.00 37.46 3.86
499 500 5.282055 TCATAGATGGATGTTCCTGTCAC 57.718 43.478 0.00 0.00 37.46 3.67
500 501 2.680312 AGATGGATGTTCCTGTCACG 57.320 50.000 0.00 0.00 37.46 4.35
501 502 1.902508 AGATGGATGTTCCTGTCACGT 59.097 47.619 0.00 0.00 37.46 4.49
502 503 3.096852 AGATGGATGTTCCTGTCACGTA 58.903 45.455 0.00 0.00 37.46 3.57
506 507 3.368013 TGGATGTTCCTGTCACGTATGAC 60.368 47.826 0.37 0.37 44.14 3.06
507 508 5.594053 TGGATGTTCCTGTCACGTATGACT 61.594 45.833 8.75 0.00 44.18 3.41
508 509 7.022574 TGGATGTTCCTGTCACGTATGACTT 62.023 44.000 8.75 0.00 44.18 3.01
509 510 8.418247 TGGATGTTCCTGTCACGTATGACTTT 62.418 42.308 8.75 0.00 44.18 2.66
510 511 9.784710 TGGATGTTCCTGTCACGTATGACTTTT 62.785 40.741 8.75 0.00 44.18 2.27
518 519 4.888917 TCACGTATGACTTTTGTGATGGA 58.111 39.130 0.00 0.00 34.85 3.41
520 521 4.000988 ACGTATGACTTTTGTGATGGACC 58.999 43.478 0.00 0.00 0.00 4.46
523 524 2.925724 TGACTTTTGTGATGGACCGTT 58.074 42.857 0.00 0.00 0.00 4.44
524 525 2.616376 TGACTTTTGTGATGGACCGTTG 59.384 45.455 0.00 0.00 0.00 4.10
526 527 3.020984 ACTTTTGTGATGGACCGTTGTT 58.979 40.909 0.00 0.00 0.00 2.83
527 528 3.445805 ACTTTTGTGATGGACCGTTGTTT 59.554 39.130 0.00 0.00 0.00 2.83
528 529 4.641094 ACTTTTGTGATGGACCGTTGTTTA 59.359 37.500 0.00 0.00 0.00 2.01
529 530 4.822036 TTTGTGATGGACCGTTGTTTAG 57.178 40.909 0.00 0.00 0.00 1.85
534 535 5.821470 TGTGATGGACCGTTGTTTAGTTTAA 59.179 36.000 0.00 0.00 0.00 1.52
537 538 7.863877 GTGATGGACCGTTGTTTAGTTTAATTT 59.136 33.333 0.00 0.00 0.00 1.82
539 540 9.333497 GATGGACCGTTGTTTAGTTTAATTTAC 57.667 33.333 0.00 0.00 0.00 2.01
540 541 8.449251 TGGACCGTTGTTTAGTTTAATTTACT 57.551 30.769 0.00 0.00 0.00 2.24
541 542 8.901793 TGGACCGTTGTTTAGTTTAATTTACTT 58.098 29.630 0.00 0.00 0.00 2.24
598 599 9.741647 ATTATAAACCTCGTAGTAGTTTAGTGC 57.258 33.333 0.00 0.00 38.58 4.40
599 600 5.718724 AAACCTCGTAGTAGTTTAGTGCT 57.281 39.130 0.00 0.00 33.61 4.40
601 602 5.809719 ACCTCGTAGTAGTTTAGTGCTAC 57.190 43.478 3.56 3.56 39.14 3.58
603 604 5.584251 ACCTCGTAGTAGTTTAGTGCTACTC 59.416 44.000 8.08 1.70 43.89 2.59
604 605 5.007528 CCTCGTAGTAGTTTAGTGCTACTCC 59.992 48.000 8.08 0.00 43.89 3.85
605 606 4.878397 TCGTAGTAGTTTAGTGCTACTCCC 59.122 45.833 8.08 1.60 43.89 4.30
606 607 4.880696 CGTAGTAGTTTAGTGCTACTCCCT 59.119 45.833 8.08 0.00 43.89 4.20
607 608 5.007528 CGTAGTAGTTTAGTGCTACTCCCTC 59.992 48.000 8.08 0.00 43.89 4.30
608 609 4.279982 AGTAGTTTAGTGCTACTCCCTCC 58.720 47.826 0.00 0.00 43.89 4.30
610 611 1.823610 GTTTAGTGCTACTCCCTCCGT 59.176 52.381 0.00 0.00 0.00 4.69
612 613 0.106819 TAGTGCTACTCCCTCCGTCC 60.107 60.000 0.00 0.00 0.00 4.79
613 614 2.043248 TGCTACTCCCTCCGTCCC 60.043 66.667 0.00 0.00 0.00 4.46
614 615 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
615 616 1.684734 GCTACTCCCTCCGTCCCAA 60.685 63.158 0.00 0.00 0.00 4.12
616 617 1.262640 GCTACTCCCTCCGTCCCAAA 61.263 60.000 0.00 0.00 0.00 3.28
617 618 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
620 621 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
621 622 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
622 623 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
623 624 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
624 625 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
625 626 3.418047 CCTCCGTCCCAAAATAAGTGTT 58.582 45.455 0.00 0.00 0.00 3.32
626 627 3.824443 CCTCCGTCCCAAAATAAGTGTTT 59.176 43.478 0.00 0.00 0.00 2.83
628 629 4.462133 TCCGTCCCAAAATAAGTGTTTCA 58.538 39.130 0.00 0.00 0.00 2.69
629 630 4.888239 TCCGTCCCAAAATAAGTGTTTCAA 59.112 37.500 0.00 0.00 0.00 2.69
630 631 4.979815 CCGTCCCAAAATAAGTGTTTCAAC 59.020 41.667 0.00 0.00 0.00 3.18
631 632 5.221165 CCGTCCCAAAATAAGTGTTTCAACT 60.221 40.000 0.00 0.00 0.00 3.16
632 633 6.270064 CGTCCCAAAATAAGTGTTTCAACTT 58.730 36.000 0.00 0.00 42.89 2.66
634 635 7.916450 CGTCCCAAAATAAGTGTTTCAACTTTA 59.084 33.333 0.00 0.00 40.77 1.85
635 636 9.758651 GTCCCAAAATAAGTGTTTCAACTTTAT 57.241 29.630 0.00 0.00 40.77 1.40
684 685 7.996644 ACTAACCTCAAGACACTTATTTTTGGA 59.003 33.333 0.00 0.00 0.00 3.53
685 686 6.635030 ACCTCAAGACACTTATTTTTGGAC 57.365 37.500 0.00 0.00 0.00 4.02
686 687 5.535030 ACCTCAAGACACTTATTTTTGGACC 59.465 40.000 0.00 0.00 0.00 4.46
687 688 5.770162 CCTCAAGACACTTATTTTTGGACCT 59.230 40.000 0.00 0.00 0.00 3.85
688 689 6.072452 CCTCAAGACACTTATTTTTGGACCTC 60.072 42.308 0.00 0.00 0.00 3.85
689 690 6.361433 TCAAGACACTTATTTTTGGACCTCA 58.639 36.000 0.00 0.00 0.00 3.86
690 691 6.831353 TCAAGACACTTATTTTTGGACCTCAA 59.169 34.615 0.00 0.00 0.00 3.02
691 692 7.340743 TCAAGACACTTATTTTTGGACCTCAAA 59.659 33.333 0.00 0.00 42.98 2.69
705 706 9.810545 TTTGGACCTCAAAACACTTATTTTTAG 57.189 29.630 0.00 0.00 41.87 1.85
706 707 8.754991 TGGACCTCAAAACACTTATTTTTAGA 57.245 30.769 0.00 0.00 28.34 2.10
707 708 8.626526 TGGACCTCAAAACACTTATTTTTAGAC 58.373 33.333 0.00 0.00 28.34 2.59
709 710 7.645402 ACCTCAAAACACTTATTTTTAGACGG 58.355 34.615 0.00 0.00 28.34 4.79
710 711 7.499895 ACCTCAAAACACTTATTTTTAGACGGA 59.500 33.333 0.00 0.00 28.34 4.69
711 712 8.015658 CCTCAAAACACTTATTTTTAGACGGAG 58.984 37.037 0.00 0.00 28.34 4.63
713 714 7.716123 TCAAAACACTTATTTTTAGACGGAGGA 59.284 33.333 0.00 0.00 29.17 3.71
714 715 8.347035 CAAAACACTTATTTTTAGACGGAGGAA 58.653 33.333 0.00 0.00 29.17 3.36
716 717 6.766429 ACACTTATTTTTAGACGGAGGAAGT 58.234 36.000 0.00 0.00 0.00 3.01
718 719 8.537858 ACACTTATTTTTAGACGGAGGAAGTAT 58.462 33.333 0.00 0.00 0.00 2.12
724 725 3.897657 AGACGGAGGAAGTATATCCCA 57.102 47.619 0.00 0.00 40.59 4.37
725 726 4.194678 AGACGGAGGAAGTATATCCCAA 57.805 45.455 0.00 0.00 40.59 4.12
726 727 4.553678 AGACGGAGGAAGTATATCCCAAA 58.446 43.478 0.00 0.00 40.59 3.28
727 728 4.589374 AGACGGAGGAAGTATATCCCAAAG 59.411 45.833 0.00 0.00 40.59 2.77
728 729 4.296056 ACGGAGGAAGTATATCCCAAAGT 58.704 43.478 0.00 0.00 40.59 2.66
729 730 5.461327 ACGGAGGAAGTATATCCCAAAGTA 58.539 41.667 0.00 0.00 40.59 2.24
730 731 5.303845 ACGGAGGAAGTATATCCCAAAGTAC 59.696 44.000 0.00 0.00 40.59 2.73
731 732 5.564259 CGGAGGAAGTATATCCCAAAGTACG 60.564 48.000 0.00 0.00 40.59 3.67
732 733 5.211174 AGGAAGTATATCCCAAAGTACGC 57.789 43.478 0.00 0.00 40.59 4.42
733 734 4.900054 AGGAAGTATATCCCAAAGTACGCT 59.100 41.667 0.00 0.00 40.59 5.07
734 735 5.365895 AGGAAGTATATCCCAAAGTACGCTT 59.634 40.000 0.00 0.00 40.59 4.68
735 736 6.053650 GGAAGTATATCCCAAAGTACGCTTT 58.946 40.000 0.00 0.00 45.04 3.51
1239 3105 2.467826 GGACTGCTGCATCGCCTTC 61.468 63.158 1.31 0.00 0.00 3.46
1351 3252 1.660607 CATGTTAGTGAGCGCGTCATT 59.339 47.619 8.43 9.73 37.56 2.57
1362 3263 0.723414 CGCGTCATTCATGCAAGACT 59.277 50.000 0.00 0.00 36.74 3.24
1366 3267 3.362831 GCGTCATTCATGCAAGACTTTTG 59.637 43.478 0.00 0.00 36.94 2.44
1446 3348 4.811024 GCTCCTTGCTTGCTTTTTACTTTT 59.189 37.500 0.00 0.00 38.95 2.27
1447 3349 5.294306 GCTCCTTGCTTGCTTTTTACTTTTT 59.706 36.000 0.00 0.00 38.95 1.94
1493 3397 5.801350 TTACTTGCTTATGTCTGTCATGC 57.199 39.130 0.00 0.00 37.91 4.06
1555 3459 9.939802 ATCGGTCAGTTAAGTCTTTATAGTTTT 57.060 29.630 0.00 0.00 0.00 2.43
1605 3513 7.495606 GTGGAATTTCTTGTTTCATCCTGTTTT 59.504 33.333 0.00 0.00 0.00 2.43
1606 3514 7.495279 TGGAATTTCTTGTTTCATCCTGTTTTG 59.505 33.333 0.00 0.00 0.00 2.44
1611 3519 6.098679 TCTTGTTTCATCCTGTTTTGTTGTG 58.901 36.000 0.00 0.00 0.00 3.33
1762 4601 3.243301 GCAATCGGCATCACAAGATTCAT 60.243 43.478 0.00 0.00 43.97 2.57
1785 4624 4.830600 TGATAGATTATACGTGCCCTGTCA 59.169 41.667 0.00 0.00 0.00 3.58
1791 4630 0.682292 TACGTGCCCTGTCATTGTCA 59.318 50.000 0.00 0.00 0.00 3.58
1797 4636 2.161855 GCCCTGTCATTGTCAACATGA 58.838 47.619 0.00 0.00 0.00 3.07
1825 4664 3.004315 GTGGCCAAAGAAAACTTCGATCA 59.996 43.478 7.24 0.00 34.02 2.92
1851 4690 0.821301 TGTTTGCACCATCCGCTCAA 60.821 50.000 0.00 0.00 0.00 3.02
1856 4695 2.016961 CACCATCCGCTCAATTCCG 58.983 57.895 0.00 0.00 0.00 4.30
1861 4700 2.483013 CCATCCGCTCAATTCCGACTTA 60.483 50.000 0.00 0.00 0.00 2.24
1879 4718 5.064198 CGACTTAACGGGAATTAAATGCAGA 59.936 40.000 0.00 0.00 0.00 4.26
1890 7313 2.015736 AAATGCAGACCTAGCTGACG 57.984 50.000 0.00 0.00 38.14 4.35
1891 7314 0.460987 AATGCAGACCTAGCTGACGC 60.461 55.000 0.00 0.00 38.14 5.19
1892 7315 2.580867 GCAGACCTAGCTGACGCG 60.581 66.667 3.53 3.53 42.32 6.01
2008 7602 2.202932 GGTGCGCTGATCACCGAT 60.203 61.111 14.50 0.00 43.75 4.18
2047 7641 1.339929 GTGAGCCAAATTTTGACCGGT 59.660 47.619 6.92 6.92 0.00 5.28
2052 7646 1.889829 CCAAATTTTGACCGGTGGCTA 59.110 47.619 14.63 0.00 0.00 3.93
2057 7651 2.054232 TTTGACCGGTGGCTAAACAA 57.946 45.000 14.63 4.92 0.00 2.83
2063 7657 0.887933 CGGTGGCTAAACAATTGGCT 59.112 50.000 10.83 0.00 42.22 4.75
2066 7660 2.352715 GGTGGCTAAACAATTGGCTCAC 60.353 50.000 10.83 12.18 42.22 3.51
2069 7663 2.164422 GGCTAAACAATTGGCTCACTCC 59.836 50.000 10.83 0.00 42.22 3.85
2085 7679 5.704515 GCTCACTCCATAACGTACTATAGGA 59.295 44.000 4.43 0.00 0.00 2.94
2101 7697 2.604174 GGACAAACGACTGCCACGG 61.604 63.158 0.00 0.00 34.93 4.94
2104 7700 4.555709 AAACGACTGCCACGGCCA 62.556 61.111 2.24 0.00 41.09 5.36
2119 7715 2.669569 CCAACACCAGCCACGAGG 60.670 66.667 0.00 0.00 38.23 4.63
2145 7741 4.626081 GCGGCATGCGGGGTCTAT 62.626 66.667 24.59 0.00 0.00 1.98
2148 7744 1.598130 GGCATGCGGGGTCTATGAC 60.598 63.158 12.44 0.00 0.00 3.06
2162 7758 2.758423 TCTATGACGAAAGCTACCTGCA 59.242 45.455 0.00 0.00 45.94 4.41
2165 7761 1.362406 GACGAAAGCTACCTGCAGGC 61.362 60.000 33.06 18.77 45.94 4.85
2210 7806 3.670377 GCCACCAACAAGGCCGTC 61.670 66.667 0.00 0.00 45.18 4.79
2215 7811 1.073199 CCAACAAGGCCGTCTTCCT 59.927 57.895 0.00 0.00 32.41 3.36
2221 7817 3.394836 GGCCGTCTTCCTCTGCCT 61.395 66.667 0.00 0.00 39.05 4.75
2222 7818 2.125350 GCCGTCTTCCTCTGCCTG 60.125 66.667 0.00 0.00 0.00 4.85
2251 7850 2.747460 GCTGCGCTTCCACCATGA 60.747 61.111 9.73 0.00 0.00 3.07
2316 7915 2.121948 TGTCAAGATGCCTGGAGCTAT 58.878 47.619 0.00 0.00 44.23 2.97
2321 7920 2.687297 AGATGCCTGGAGCTATCTTGA 58.313 47.619 0.00 0.00 44.23 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.220363 CGTCAAGGATGCGAAGATCATG 59.780 50.000 0.00 0.00 0.00 3.07
1 2 2.159043 ACGTCAAGGATGCGAAGATCAT 60.159 45.455 0.00 0.00 32.74 2.45
2 3 1.204704 ACGTCAAGGATGCGAAGATCA 59.795 47.619 0.00 0.00 32.74 2.92
3 4 1.855360 GACGTCAAGGATGCGAAGATC 59.145 52.381 11.55 0.00 32.74 2.75
5 6 0.888619 AGACGTCAAGGATGCGAAGA 59.111 50.000 19.50 0.00 32.74 2.87
6 7 2.186076 GTAGACGTCAAGGATGCGAAG 58.814 52.381 19.50 0.00 32.74 3.79
7 8 1.466866 CGTAGACGTCAAGGATGCGAA 60.467 52.381 19.50 0.00 32.74 4.70
8 9 0.098200 CGTAGACGTCAAGGATGCGA 59.902 55.000 19.50 0.00 32.74 5.10
9 10 1.472276 GCGTAGACGTCAAGGATGCG 61.472 60.000 19.50 12.76 42.22 4.73
10 11 1.146358 GGCGTAGACGTCAAGGATGC 61.146 60.000 19.50 15.37 44.43 3.91
11 12 2.959275 GGCGTAGACGTCAAGGATG 58.041 57.895 19.50 6.49 44.43 3.51
21 22 1.268437 GGTGTAGATGTCGGCGTAGAC 60.268 57.143 6.85 0.00 41.30 2.59
24 25 0.744057 TCGGTGTAGATGTCGGCGTA 60.744 55.000 6.85 0.00 0.00 4.42
25 26 1.381928 ATCGGTGTAGATGTCGGCGT 61.382 55.000 6.85 0.00 0.00 5.68
26 27 0.934901 CATCGGTGTAGATGTCGGCG 60.935 60.000 0.00 0.00 42.15 6.46
49 50 2.134287 ATCCTCACCATCGGTCCCG 61.134 63.158 0.00 0.00 41.35 5.14
50 51 1.447643 CATCCTCACCATCGGTCCC 59.552 63.158 0.00 0.00 31.02 4.46
53 54 2.072487 CCCCATCCTCACCATCGGT 61.072 63.158 0.00 0.00 35.62 4.69
54 55 1.762522 CTCCCCATCCTCACCATCGG 61.763 65.000 0.00 0.00 0.00 4.18
56 57 2.103153 TACTCCCCATCCTCACCATC 57.897 55.000 0.00 0.00 0.00 3.51
57 58 2.412591 CTTACTCCCCATCCTCACCAT 58.587 52.381 0.00 0.00 0.00 3.55
60 61 1.132500 CCCTTACTCCCCATCCTCAC 58.868 60.000 0.00 0.00 0.00 3.51
61 62 0.722676 ACCCTTACTCCCCATCCTCA 59.277 55.000 0.00 0.00 0.00 3.86
65 66 1.532238 GCCACCCTTACTCCCCATC 59.468 63.158 0.00 0.00 0.00 3.51
66 67 2.375345 CGCCACCCTTACTCCCCAT 61.375 63.158 0.00 0.00 0.00 4.00
69 70 2.686106 TCCGCCACCCTTACTCCC 60.686 66.667 0.00 0.00 0.00 4.30
71 72 2.183555 CGTCCGCCACCCTTACTC 59.816 66.667 0.00 0.00 0.00 2.59
72 73 2.786512 TACCGTCCGCCACCCTTACT 62.787 60.000 0.00 0.00 0.00 2.24
76 77 3.387947 CTTACCGTCCGCCACCCT 61.388 66.667 0.00 0.00 0.00 4.34
78 79 4.462280 CCCTTACCGTCCGCCACC 62.462 72.222 0.00 0.00 0.00 4.61
81 82 4.525949 GAGCCCTTACCGTCCGCC 62.526 72.222 0.00 0.00 0.00 6.13
82 83 4.867599 CGAGCCCTTACCGTCCGC 62.868 72.222 0.00 0.00 0.00 5.54
83 84 4.203076 CCGAGCCCTTACCGTCCG 62.203 72.222 0.00 0.00 0.00 4.79
96 97 3.546714 AACCTTTCCCACGCCCGAG 62.547 63.158 0.00 0.00 0.00 4.63
97 98 3.562232 AACCTTTCCCACGCCCGA 61.562 61.111 0.00 0.00 0.00 5.14
100 101 1.971695 CTCCAACCTTTCCCACGCC 60.972 63.158 0.00 0.00 0.00 5.68
102 103 1.303317 CCCTCCAACCTTTCCCACG 60.303 63.158 0.00 0.00 0.00 4.94
108 109 2.282462 CGCTGCCCTCCAACCTTT 60.282 61.111 0.00 0.00 0.00 3.11
109 110 3.570212 ACGCTGCCCTCCAACCTT 61.570 61.111 0.00 0.00 0.00 3.50
110 111 4.335647 CACGCTGCCCTCCAACCT 62.336 66.667 0.00 0.00 0.00 3.50
111 112 4.329545 TCACGCTGCCCTCCAACC 62.330 66.667 0.00 0.00 0.00 3.77
112 113 2.743928 CTCACGCTGCCCTCCAAC 60.744 66.667 0.00 0.00 0.00 3.77
116 117 4.154347 CCTCCTCACGCTGCCCTC 62.154 72.222 0.00 0.00 0.00 4.30
117 118 4.704103 TCCTCCTCACGCTGCCCT 62.704 66.667 0.00 0.00 0.00 5.19
118 119 4.154347 CTCCTCCTCACGCTGCCC 62.154 72.222 0.00 0.00 0.00 5.36
119 120 4.154347 CCTCCTCCTCACGCTGCC 62.154 72.222 0.00 0.00 0.00 4.85
120 121 2.570582 CTTCCTCCTCCTCACGCTGC 62.571 65.000 0.00 0.00 0.00 5.25
122 123 1.684049 CCTTCCTCCTCCTCACGCT 60.684 63.158 0.00 0.00 0.00 5.07
123 124 2.726351 CCCTTCCTCCTCCTCACGC 61.726 68.421 0.00 0.00 0.00 5.34
124 125 0.905337 AACCCTTCCTCCTCCTCACG 60.905 60.000 0.00 0.00 0.00 4.35
125 126 1.003696 CAAACCCTTCCTCCTCCTCAC 59.996 57.143 0.00 0.00 0.00 3.51
126 127 1.362224 CAAACCCTTCCTCCTCCTCA 58.638 55.000 0.00 0.00 0.00 3.86
127 128 0.621082 CCAAACCCTTCCTCCTCCTC 59.379 60.000 0.00 0.00 0.00 3.71
128 129 0.103876 ACCAAACCCTTCCTCCTCCT 60.104 55.000 0.00 0.00 0.00 3.69
130 131 0.038310 CCACCAAACCCTTCCTCCTC 59.962 60.000 0.00 0.00 0.00 3.71
131 132 0.402861 TCCACCAAACCCTTCCTCCT 60.403 55.000 0.00 0.00 0.00 3.69
134 135 3.401342 ACTTAATCCACCAAACCCTTCCT 59.599 43.478 0.00 0.00 0.00 3.36
135 136 3.509967 CACTTAATCCACCAAACCCTTCC 59.490 47.826 0.00 0.00 0.00 3.46
136 137 3.056821 GCACTTAATCCACCAAACCCTTC 60.057 47.826 0.00 0.00 0.00 3.46
139 140 2.243810 TGCACTTAATCCACCAAACCC 58.756 47.619 0.00 0.00 0.00 4.11
141 142 5.334028 GCAAATTGCACTTAATCCACCAAAC 60.334 40.000 13.73 0.00 44.26 2.93
143 144 4.314121 GCAAATTGCACTTAATCCACCAA 58.686 39.130 13.73 0.00 44.26 3.67
144 145 3.924144 GCAAATTGCACTTAATCCACCA 58.076 40.909 13.73 0.00 44.26 4.17
157 158 0.740516 CCGACCCCATTGCAAATTGC 60.741 55.000 11.58 11.58 45.29 3.56
158 159 0.607620 ACCGACCCCATTGCAAATTG 59.392 50.000 1.71 0.00 0.00 2.32
160 161 0.607620 CAACCGACCCCATTGCAAAT 59.392 50.000 1.71 0.00 0.00 2.32
162 163 1.152652 ACAACCGACCCCATTGCAA 60.153 52.632 0.00 0.00 0.00 4.08
163 164 1.602323 GACAACCGACCCCATTGCA 60.602 57.895 0.00 0.00 0.00 4.08
164 165 0.965363 ATGACAACCGACCCCATTGC 60.965 55.000 0.00 0.00 0.00 3.56
165 166 0.810648 CATGACAACCGACCCCATTG 59.189 55.000 0.00 0.00 0.00 2.82
169 170 0.738412 CGTACATGACAACCGACCCC 60.738 60.000 0.00 0.00 0.00 4.95
170 171 0.244450 TCGTACATGACAACCGACCC 59.756 55.000 0.00 0.00 0.00 4.46
171 172 1.336148 TGTCGTACATGACAACCGACC 60.336 52.381 17.49 7.07 45.40 4.79
172 173 2.054687 TGTCGTACATGACAACCGAC 57.945 50.000 0.00 9.67 45.40 4.79
206 207 1.371558 GGCGGATATGGAGGTGTCC 59.628 63.158 0.00 0.00 44.24 4.02
208 209 2.147387 GGGGCGGATATGGAGGTGT 61.147 63.158 0.00 0.00 0.00 4.16
227 228 3.270433 CCCCTCATATCCAGCCCAAATAT 59.730 47.826 0.00 0.00 0.00 1.28
231 232 0.328450 ACCCCTCATATCCAGCCCAA 60.328 55.000 0.00 0.00 0.00 4.12
233 234 1.763770 CACCCCTCATATCCAGCCC 59.236 63.158 0.00 0.00 0.00 5.19
237 238 2.146724 CCGGCACCCCTCATATCCA 61.147 63.158 0.00 0.00 0.00 3.41
239 240 1.371558 GACCGGCACCCCTCATATC 59.628 63.158 0.00 0.00 0.00 1.63
240 241 1.383943 TGACCGGCACCCCTCATAT 60.384 57.895 0.00 0.00 0.00 1.78
241 242 2.039787 TGACCGGCACCCCTCATA 59.960 61.111 0.00 0.00 0.00 2.15
255 256 2.361104 TCAAATGCCCGGGCTGAC 60.361 61.111 43.34 18.22 42.51 3.51
256 257 2.045045 CTCAAATGCCCGGGCTGA 60.045 61.111 43.34 35.20 42.51 4.26
257 258 3.142838 CCTCAAATGCCCGGGCTG 61.143 66.667 43.34 33.23 42.51 4.85
267 268 2.041216 ACTCCTTAAACGGGCCTCAAAT 59.959 45.455 0.84 0.00 0.00 2.32
269 270 1.002773 GACTCCTTAAACGGGCCTCAA 59.997 52.381 0.84 0.00 0.00 3.02
270 271 0.611714 GACTCCTTAAACGGGCCTCA 59.388 55.000 0.84 0.00 0.00 3.86
272 273 1.896122 CGGACTCCTTAAACGGGCCT 61.896 60.000 0.84 0.00 0.00 5.19
273 274 1.449070 CGGACTCCTTAAACGGGCC 60.449 63.158 0.00 0.00 0.00 5.80
274 275 0.738762 GACGGACTCCTTAAACGGGC 60.739 60.000 0.00 0.00 0.00 6.13
276 277 1.403780 CCAGACGGACTCCTTAAACGG 60.404 57.143 0.00 0.00 0.00 4.44
277 278 1.403780 CCCAGACGGACTCCTTAAACG 60.404 57.143 0.00 0.00 0.00 3.60
278 279 1.622312 ACCCAGACGGACTCCTTAAAC 59.378 52.381 0.00 0.00 34.64 2.01
279 280 1.897802 GACCCAGACGGACTCCTTAAA 59.102 52.381 0.00 0.00 34.64 1.52
280 281 1.203087 TGACCCAGACGGACTCCTTAA 60.203 52.381 0.00 0.00 34.64 1.85
281 282 0.406750 TGACCCAGACGGACTCCTTA 59.593 55.000 0.00 0.00 34.64 2.69
282 283 0.471211 TTGACCCAGACGGACTCCTT 60.471 55.000 0.00 0.00 34.64 3.36
285 286 2.474410 AATTTGACCCAGACGGACTC 57.526 50.000 0.00 0.00 34.64 3.36
286 287 2.951229 AAATTTGACCCAGACGGACT 57.049 45.000 0.00 0.00 34.64 3.85
288 289 3.216187 TGAAAATTTGACCCAGACGGA 57.784 42.857 0.00 0.00 34.64 4.69
289 290 3.505680 TCATGAAAATTTGACCCAGACGG 59.494 43.478 0.00 0.00 37.81 4.79
290 291 4.475944 GTCATGAAAATTTGACCCAGACG 58.524 43.478 0.00 0.00 36.98 4.18
298 299 5.242615 TCATTGACCGGTCATGAAAATTTGA 59.757 36.000 36.52 22.90 39.64 2.69
299 300 5.345741 GTCATTGACCGGTCATGAAAATTTG 59.654 40.000 36.52 21.33 39.64 2.32
300 301 5.469479 GTCATTGACCGGTCATGAAAATTT 58.531 37.500 36.52 12.07 39.64 1.82
301 302 4.082245 GGTCATTGACCGGTCATGAAAATT 60.082 41.667 36.52 13.40 43.14 1.82
302 303 3.443681 GGTCATTGACCGGTCATGAAAAT 59.556 43.478 36.52 23.72 43.14 1.82
303 304 2.817258 GGTCATTGACCGGTCATGAAAA 59.183 45.455 36.52 22.49 43.14 2.29
304 305 2.432444 GGTCATTGACCGGTCATGAAA 58.568 47.619 36.52 22.89 43.14 2.69
306 307 3.853104 GGTCATTGACCGGTCATGA 57.147 52.632 36.52 32.43 43.14 3.07
315 316 0.168128 CGGGCTTTTCGGTCATTGAC 59.832 55.000 8.34 8.34 0.00 3.18
316 317 1.582610 GCGGGCTTTTCGGTCATTGA 61.583 55.000 0.00 0.00 0.00 2.57
317 318 1.154035 GCGGGCTTTTCGGTCATTG 60.154 57.895 0.00 0.00 0.00 2.82
318 319 2.340328 GGCGGGCTTTTCGGTCATT 61.340 57.895 0.00 0.00 0.00 2.57
319 320 2.750237 GGCGGGCTTTTCGGTCAT 60.750 61.111 0.00 0.00 0.00 3.06
333 334 4.944372 GTCTCATACGGCCGGGCG 62.944 72.222 44.20 44.20 0.00 6.13
342 343 1.593006 CGCCACAAATCCGTCTCATAC 59.407 52.381 0.00 0.00 0.00 2.39
343 344 1.934589 CGCCACAAATCCGTCTCATA 58.065 50.000 0.00 0.00 0.00 2.15
344 345 1.369091 GCGCCACAAATCCGTCTCAT 61.369 55.000 0.00 0.00 0.00 2.90
346 347 2.750888 GGCGCCACAAATCCGTCTC 61.751 63.158 24.80 0.00 0.00 3.36
347 348 2.746277 GGCGCCACAAATCCGTCT 60.746 61.111 24.80 0.00 0.00 4.18
348 349 3.810896 GGGCGCCACAAATCCGTC 61.811 66.667 30.85 1.84 0.00 4.79
352 353 3.370231 AACCGGGCGCCACAAATC 61.370 61.111 30.85 8.61 0.00 2.17
353 354 3.679738 CAACCGGGCGCCACAAAT 61.680 61.111 30.85 7.00 0.00 2.32
354 355 3.769369 TACAACCGGGCGCCACAAA 62.769 57.895 30.85 3.07 0.00 2.83
355 356 4.251771 TACAACCGGGCGCCACAA 62.252 61.111 30.85 2.44 0.00 3.33
356 357 4.690719 CTACAACCGGGCGCCACA 62.691 66.667 30.85 3.14 0.00 4.17
358 359 3.395702 ATCTACAACCGGGCGCCA 61.396 61.111 30.85 3.80 0.00 5.69
360 361 1.222115 GATCATCTACAACCGGGCGC 61.222 60.000 6.32 0.00 0.00 6.53
361 362 0.389391 AGATCATCTACAACCGGGCG 59.611 55.000 6.32 0.00 0.00 6.13
362 363 2.622064 AAGATCATCTACAACCGGGC 57.378 50.000 6.32 0.00 0.00 6.13
363 364 3.555168 GGCTAAGATCATCTACAACCGGG 60.555 52.174 6.32 0.00 0.00 5.73
364 365 3.654414 GGCTAAGATCATCTACAACCGG 58.346 50.000 0.00 0.00 0.00 5.28
365 366 3.004419 TCGGCTAAGATCATCTACAACCG 59.996 47.826 10.59 10.59 38.27 4.44
366 367 4.299978 GTCGGCTAAGATCATCTACAACC 58.700 47.826 0.00 0.00 0.00 3.77
367 368 4.038162 AGGTCGGCTAAGATCATCTACAAC 59.962 45.833 0.00 0.00 0.00 3.32
368 369 4.215908 AGGTCGGCTAAGATCATCTACAA 58.784 43.478 0.00 0.00 0.00 2.41
370 371 4.857509 AAGGTCGGCTAAGATCATCTAC 57.142 45.455 0.00 0.00 0.00 2.59
371 372 6.010850 ACATAAGGTCGGCTAAGATCATCTA 58.989 40.000 0.00 0.00 0.00 1.98
373 374 4.926238 CACATAAGGTCGGCTAAGATCATC 59.074 45.833 0.00 0.00 0.00 2.92
374 375 4.345257 ACACATAAGGTCGGCTAAGATCAT 59.655 41.667 0.00 0.00 0.00 2.45
375 376 3.704566 ACACATAAGGTCGGCTAAGATCA 59.295 43.478 0.00 0.00 0.00 2.92
378 379 2.829720 ACACACATAAGGTCGGCTAAGA 59.170 45.455 0.00 0.00 0.00 2.10
379 380 3.247006 ACACACATAAGGTCGGCTAAG 57.753 47.619 0.00 0.00 0.00 2.18
380 381 3.259876 AGAACACACATAAGGTCGGCTAA 59.740 43.478 0.00 0.00 0.00 3.09
381 382 2.829720 AGAACACACATAAGGTCGGCTA 59.170 45.455 0.00 0.00 0.00 3.93
382 383 1.623811 AGAACACACATAAGGTCGGCT 59.376 47.619 0.00 0.00 0.00 5.52
383 384 1.732259 CAGAACACACATAAGGTCGGC 59.268 52.381 0.00 0.00 0.00 5.54
384 385 2.993899 GACAGAACACACATAAGGTCGG 59.006 50.000 0.00 0.00 0.00 4.79
385 386 3.914312 AGACAGAACACACATAAGGTCG 58.086 45.455 0.00 0.00 0.00 4.79
386 387 4.865365 GCTAGACAGAACACACATAAGGTC 59.135 45.833 0.00 0.00 0.00 3.85
387 388 4.528596 AGCTAGACAGAACACACATAAGGT 59.471 41.667 0.00 0.00 0.00 3.50
389 390 4.867047 CCAGCTAGACAGAACACACATAAG 59.133 45.833 0.00 0.00 0.00 1.73
390 391 4.322725 CCCAGCTAGACAGAACACACATAA 60.323 45.833 0.00 0.00 0.00 1.90
392 393 2.027745 CCCAGCTAGACAGAACACACAT 60.028 50.000 0.00 0.00 0.00 3.21
395 396 2.009681 TCCCAGCTAGACAGAACACA 57.990 50.000 0.00 0.00 0.00 3.72
396 397 3.265791 CAATCCCAGCTAGACAGAACAC 58.734 50.000 0.00 0.00 0.00 3.32
397 398 2.906389 ACAATCCCAGCTAGACAGAACA 59.094 45.455 0.00 0.00 0.00 3.18
398 399 3.618690 ACAATCCCAGCTAGACAGAAC 57.381 47.619 0.00 0.00 0.00 3.01
399 400 5.425217 TCAATACAATCCCAGCTAGACAGAA 59.575 40.000 0.00 0.00 0.00 3.02
400 401 4.962362 TCAATACAATCCCAGCTAGACAGA 59.038 41.667 0.00 0.00 0.00 3.41
401 402 5.282055 TCAATACAATCCCAGCTAGACAG 57.718 43.478 0.00 0.00 0.00 3.51
403 404 5.858381 TCATCAATACAATCCCAGCTAGAC 58.142 41.667 0.00 0.00 0.00 2.59
405 406 6.349115 GCATTCATCAATACAATCCCAGCTAG 60.349 42.308 0.00 0.00 0.00 3.42
407 408 4.280174 GCATTCATCAATACAATCCCAGCT 59.720 41.667 0.00 0.00 0.00 4.24
408 409 4.038282 TGCATTCATCAATACAATCCCAGC 59.962 41.667 0.00 0.00 0.00 4.85
409 410 5.777850 TGCATTCATCAATACAATCCCAG 57.222 39.130 0.00 0.00 0.00 4.45
410 411 5.011227 CCATGCATTCATCAATACAATCCCA 59.989 40.000 0.00 0.00 0.00 4.37
411 412 5.011329 ACCATGCATTCATCAATACAATCCC 59.989 40.000 0.00 0.00 0.00 3.85
412 413 5.924254 CACCATGCATTCATCAATACAATCC 59.076 40.000 0.00 0.00 0.00 3.01
414 415 5.294356 GCACCATGCATTCATCAATACAAT 58.706 37.500 0.00 0.00 44.26 2.71
415 416 4.684877 GCACCATGCATTCATCAATACAA 58.315 39.130 0.00 0.00 44.26 2.41
416 417 3.243134 CGCACCATGCATTCATCAATACA 60.243 43.478 0.00 0.00 45.36 2.29
417 418 3.003585 TCGCACCATGCATTCATCAATAC 59.996 43.478 0.00 0.00 45.36 1.89
421 422 0.734309 GTCGCACCATGCATTCATCA 59.266 50.000 0.00 0.00 45.36 3.07
422 423 0.316442 CGTCGCACCATGCATTCATC 60.316 55.000 0.00 0.00 45.36 2.92
424 425 1.670730 ACGTCGCACCATGCATTCA 60.671 52.632 0.00 0.00 45.36 2.57
425 426 1.226101 CACGTCGCACCATGCATTC 60.226 57.895 0.00 0.00 45.36 2.67
426 427 1.670730 TCACGTCGCACCATGCATT 60.671 52.632 0.00 0.00 45.36 3.56
427 428 2.047370 TCACGTCGCACCATGCAT 60.047 55.556 0.00 0.00 45.36 3.96
428 429 3.041351 GTCACGTCGCACCATGCA 61.041 61.111 1.20 0.00 45.36 3.96
429 430 2.730672 GAGTCACGTCGCACCATGC 61.731 63.158 0.00 0.00 40.69 4.06
450 451 1.866853 CTTTTCTTCCTGCCCCACGC 61.867 60.000 0.00 0.00 38.31 5.34
451 452 0.537371 ACTTTTCTTCCTGCCCCACG 60.537 55.000 0.00 0.00 0.00 4.94
452 453 2.579410 TACTTTTCTTCCTGCCCCAC 57.421 50.000 0.00 0.00 0.00 4.61
453 454 3.202151 CCTATACTTTTCTTCCTGCCCCA 59.798 47.826 0.00 0.00 0.00 4.96
454 455 3.202373 ACCTATACTTTTCTTCCTGCCCC 59.798 47.826 0.00 0.00 0.00 5.80
455 456 4.505324 ACCTATACTTTTCTTCCTGCCC 57.495 45.455 0.00 0.00 0.00 5.36
456 457 5.497474 TGAACCTATACTTTTCTTCCTGCC 58.503 41.667 0.00 0.00 0.00 4.85
457 458 8.204836 TCTATGAACCTATACTTTTCTTCCTGC 58.795 37.037 0.00 0.00 0.00 4.85
467 468 8.598041 GGAACATCCATCTATGAACCTATACTT 58.402 37.037 0.00 0.00 36.28 2.24
468 469 7.958583 AGGAACATCCATCTATGAACCTATACT 59.041 37.037 0.00 0.00 39.61 2.12
469 470 8.037758 CAGGAACATCCATCTATGAACCTATAC 58.962 40.741 0.00 0.00 39.61 1.47
471 472 6.560304 ACAGGAACATCCATCTATGAACCTAT 59.440 38.462 0.00 0.00 39.61 2.57
472 473 5.905331 ACAGGAACATCCATCTATGAACCTA 59.095 40.000 0.00 0.00 39.61 3.08
473 474 4.723789 ACAGGAACATCCATCTATGAACCT 59.276 41.667 0.00 0.00 39.61 3.50
474 475 5.041191 ACAGGAACATCCATCTATGAACC 57.959 43.478 0.00 0.00 39.61 3.62
475 476 5.525378 GTGACAGGAACATCCATCTATGAAC 59.475 44.000 0.00 0.00 39.61 3.18
476 477 5.674525 GTGACAGGAACATCCATCTATGAA 58.325 41.667 0.00 0.00 39.61 2.57
477 478 4.202151 CGTGACAGGAACATCCATCTATGA 60.202 45.833 0.00 0.00 39.61 2.15
478 479 4.053983 CGTGACAGGAACATCCATCTATG 58.946 47.826 0.00 0.00 39.61 2.23
479 480 3.706594 ACGTGACAGGAACATCCATCTAT 59.293 43.478 1.39 0.00 39.61 1.98
480 481 3.096852 ACGTGACAGGAACATCCATCTA 58.903 45.455 1.39 0.00 39.61 1.98
481 482 1.902508 ACGTGACAGGAACATCCATCT 59.097 47.619 1.39 0.00 39.61 2.90
482 483 2.386661 ACGTGACAGGAACATCCATC 57.613 50.000 1.39 0.00 39.61 3.51
483 484 3.450817 TCATACGTGACAGGAACATCCAT 59.549 43.478 0.00 0.00 39.61 3.41
484 485 2.829120 TCATACGTGACAGGAACATCCA 59.171 45.455 0.00 0.00 39.61 3.41
485 486 3.520290 TCATACGTGACAGGAACATCC 57.480 47.619 0.00 0.00 36.58 3.51
499 500 3.062099 CGGTCCATCACAAAAGTCATACG 59.938 47.826 0.00 0.00 0.00 3.06
500 501 4.000988 ACGGTCCATCACAAAAGTCATAC 58.999 43.478 0.00 0.00 0.00 2.39
501 502 4.280436 ACGGTCCATCACAAAAGTCATA 57.720 40.909 0.00 0.00 0.00 2.15
502 503 3.140325 ACGGTCCATCACAAAAGTCAT 57.860 42.857 0.00 0.00 0.00 3.06
506 507 3.708563 AACAACGGTCCATCACAAAAG 57.291 42.857 0.00 0.00 0.00 2.27
507 508 4.641094 ACTAAACAACGGTCCATCACAAAA 59.359 37.500 0.00 0.00 0.00 2.44
508 509 4.200874 ACTAAACAACGGTCCATCACAAA 58.799 39.130 0.00 0.00 0.00 2.83
509 510 3.811083 ACTAAACAACGGTCCATCACAA 58.189 40.909 0.00 0.00 0.00 3.33
510 511 3.478857 ACTAAACAACGGTCCATCACA 57.521 42.857 0.00 0.00 0.00 3.58
511 512 4.823790 AAACTAAACAACGGTCCATCAC 57.176 40.909 0.00 0.00 0.00 3.06
512 513 7.513371 AATTAAACTAAACAACGGTCCATCA 57.487 32.000 0.00 0.00 0.00 3.07
513 514 9.333497 GTAAATTAAACTAAACAACGGTCCATC 57.667 33.333 0.00 0.00 0.00 3.51
514 515 9.070179 AGTAAATTAAACTAAACAACGGTCCAT 57.930 29.630 0.00 0.00 0.00 3.41
516 517 9.734620 AAAGTAAATTAAACTAAACAACGGTCC 57.265 29.630 0.00 0.00 0.00 4.46
572 573 9.741647 GCACTAAACTACTACGAGGTTTATAAT 57.258 33.333 0.00 0.00 35.70 1.28
573 574 8.960591 AGCACTAAACTACTACGAGGTTTATAA 58.039 33.333 0.00 0.00 35.70 0.98
574 575 8.511604 AGCACTAAACTACTACGAGGTTTATA 57.488 34.615 0.00 0.00 35.70 0.98
575 576 7.401955 AGCACTAAACTACTACGAGGTTTAT 57.598 36.000 0.00 0.00 35.70 1.40
576 577 6.824305 AGCACTAAACTACTACGAGGTTTA 57.176 37.500 0.00 0.00 35.29 2.01
577 578 5.718724 AGCACTAAACTACTACGAGGTTT 57.281 39.130 0.00 0.00 37.08 3.27
578 579 5.942826 AGTAGCACTAAACTACTACGAGGTT 59.057 40.000 1.71 0.00 46.57 3.50
579 580 5.495640 AGTAGCACTAAACTACTACGAGGT 58.504 41.667 1.71 0.00 46.57 3.85
588 589 3.285484 CGGAGGGAGTAGCACTAAACTA 58.715 50.000 0.00 0.00 0.00 2.24
590 591 1.823610 ACGGAGGGAGTAGCACTAAAC 59.176 52.381 0.00 0.00 0.00 2.01
592 593 1.684248 GGACGGAGGGAGTAGCACTAA 60.684 57.143 0.00 0.00 0.00 2.24
593 594 0.106819 GGACGGAGGGAGTAGCACTA 60.107 60.000 0.00 0.00 0.00 2.74
594 595 1.380112 GGACGGAGGGAGTAGCACT 60.380 63.158 0.00 0.00 0.00 4.40
595 596 2.424733 GGGACGGAGGGAGTAGCAC 61.425 68.421 0.00 0.00 0.00 4.40
598 599 1.272807 TTTTGGGACGGAGGGAGTAG 58.727 55.000 0.00 0.00 0.00 2.57
599 600 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
601 602 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
602 603 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
603 604 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
604 605 3.067684 ACACTTATTTTGGGACGGAGG 57.932 47.619 0.00 0.00 0.00 4.30
605 606 4.517453 TGAAACACTTATTTTGGGACGGAG 59.483 41.667 0.00 0.00 0.00 4.63
606 607 4.462133 TGAAACACTTATTTTGGGACGGA 58.538 39.130 0.00 0.00 0.00 4.69
607 608 4.839668 TGAAACACTTATTTTGGGACGG 57.160 40.909 0.00 0.00 0.00 4.79
608 609 5.827666 AGTTGAAACACTTATTTTGGGACG 58.172 37.500 0.00 0.00 0.00 4.79
657 658 9.280174 CCAAAAATAAGTGTCTTGAGGTTAGTA 57.720 33.333 0.00 0.00 0.00 1.82
659 660 8.290325 GTCCAAAAATAAGTGTCTTGAGGTTAG 58.710 37.037 0.00 0.00 0.00 2.34
660 661 7.229907 GGTCCAAAAATAAGTGTCTTGAGGTTA 59.770 37.037 0.00 0.00 0.00 2.85
661 662 6.040504 GGTCCAAAAATAAGTGTCTTGAGGTT 59.959 38.462 0.00 0.00 0.00 3.50
664 665 6.486657 TGAGGTCCAAAAATAAGTGTCTTGAG 59.513 38.462 0.00 0.00 0.00 3.02
665 666 6.361433 TGAGGTCCAAAAATAAGTGTCTTGA 58.639 36.000 0.00 0.00 0.00 3.02
667 668 7.654022 TTTGAGGTCCAAAAATAAGTGTCTT 57.346 32.000 0.00 0.00 41.43 3.01
679 680 9.810545 CTAAAAATAAGTGTTTTGAGGTCCAAA 57.189 29.630 0.00 0.00 42.56 3.28
680 681 9.191479 TCTAAAAATAAGTGTTTTGAGGTCCAA 57.809 29.630 0.00 0.00 32.59 3.53
681 682 8.626526 GTCTAAAAATAAGTGTTTTGAGGTCCA 58.373 33.333 0.00 0.00 32.59 4.02
682 683 7.801783 CGTCTAAAAATAAGTGTTTTGAGGTCC 59.198 37.037 0.00 0.00 32.59 4.46
684 685 7.499895 TCCGTCTAAAAATAAGTGTTTTGAGGT 59.500 33.333 0.00 0.00 32.59 3.85
685 686 7.867752 TCCGTCTAAAAATAAGTGTTTTGAGG 58.132 34.615 0.00 0.00 32.59 3.86
686 687 8.015658 CCTCCGTCTAAAAATAAGTGTTTTGAG 58.984 37.037 0.00 0.00 32.87 3.02
687 688 7.716123 TCCTCCGTCTAAAAATAAGTGTTTTGA 59.284 33.333 0.00 0.00 32.02 2.69
688 689 7.867752 TCCTCCGTCTAAAAATAAGTGTTTTG 58.132 34.615 0.00 0.00 32.02 2.44
689 690 8.454570 TTCCTCCGTCTAAAAATAAGTGTTTT 57.545 30.769 0.00 0.00 32.94 2.43
690 691 7.718314 ACTTCCTCCGTCTAAAAATAAGTGTTT 59.282 33.333 0.00 0.00 0.00 2.83
691 692 7.222161 ACTTCCTCCGTCTAAAAATAAGTGTT 58.778 34.615 0.00 0.00 0.00 3.32
692 693 6.766429 ACTTCCTCCGTCTAAAAATAAGTGT 58.234 36.000 0.00 0.00 0.00 3.55
693 694 8.943909 ATACTTCCTCCGTCTAAAAATAAGTG 57.056 34.615 0.00 0.00 0.00 3.16
698 699 7.291651 TGGGATATACTTCCTCCGTCTAAAAAT 59.708 37.037 0.00 0.00 35.97 1.82
700 701 6.138263 TGGGATATACTTCCTCCGTCTAAAA 58.862 40.000 0.00 0.00 35.97 1.52
702 703 5.329191 TGGGATATACTTCCTCCGTCTAA 57.671 43.478 0.00 0.00 35.97 2.10
703 704 5.329191 TTGGGATATACTTCCTCCGTCTA 57.671 43.478 0.00 0.00 35.97 2.59
704 705 3.897657 TGGGATATACTTCCTCCGTCT 57.102 47.619 0.00 0.00 35.97 4.18
705 706 4.344390 ACTTTGGGATATACTTCCTCCGTC 59.656 45.833 0.00 0.00 35.97 4.79
706 707 4.296056 ACTTTGGGATATACTTCCTCCGT 58.704 43.478 0.00 0.00 35.97 4.69
707 708 4.957684 ACTTTGGGATATACTTCCTCCG 57.042 45.455 0.00 0.00 35.97 4.63
709 710 5.010820 AGCGTACTTTGGGATATACTTCCTC 59.989 44.000 0.00 0.00 35.97 3.71
710 711 4.900054 AGCGTACTTTGGGATATACTTCCT 59.100 41.667 0.00 0.00 35.97 3.36
711 712 5.211174 AGCGTACTTTGGGATATACTTCC 57.789 43.478 0.00 0.00 34.83 3.46
735 736 9.261180 GGATAACGATCTATTCTTTGATCAACA 57.739 33.333 7.89 0.00 39.06 3.33
736 737 8.713271 GGGATAACGATCTATTCTTTGATCAAC 58.287 37.037 7.89 0.00 39.06 3.18
737 738 7.878127 GGGGATAACGATCTATTCTTTGATCAA 59.122 37.037 3.38 3.38 39.06 2.57
738 739 7.235606 AGGGGATAACGATCTATTCTTTGATCA 59.764 37.037 0.00 0.00 39.06 2.92
739 740 7.547370 CAGGGGATAACGATCTATTCTTTGATC 59.453 40.741 0.00 0.00 36.62 2.92
740 741 7.390027 CAGGGGATAACGATCTATTCTTTGAT 58.610 38.462 0.00 0.00 32.15 2.57
741 742 6.741521 GCAGGGGATAACGATCTATTCTTTGA 60.742 42.308 0.00 0.00 32.15 2.69
743 744 5.552178 GCAGGGGATAACGATCTATTCTTT 58.448 41.667 0.00 0.00 32.15 2.52
745 746 3.193691 CGCAGGGGATAACGATCTATTCT 59.806 47.826 0.00 0.00 32.15 2.40
848 849 2.145397 AGCTGGACTCCATTAGACGA 57.855 50.000 0.00 0.00 30.82 4.20
1351 3252 2.948979 ACGAACCAAAAGTCTTGCATGA 59.051 40.909 0.00 0.00 0.00 3.07
1362 3263 4.580995 ACACACATATCCAACGAACCAAAA 59.419 37.500 0.00 0.00 0.00 2.44
1366 3267 4.454504 AGAAACACACATATCCAACGAACC 59.545 41.667 0.00 0.00 0.00 3.62
1447 3349 5.956068 AAAGCAAGTGCCTTTTTGAAAAA 57.044 30.435 2.83 2.83 43.38 1.94
1448 3350 5.956068 AAAAGCAAGTGCCTTTTTGAAAA 57.044 30.435 0.00 0.00 43.38 2.29
1449 3351 5.956068 AAAAAGCAAGTGCCTTTTTGAAA 57.044 30.435 17.55 0.00 40.57 2.69
1468 3370 7.083858 GCATGACAGACATAAGCAAGTAAAAA 58.916 34.615 0.00 0.00 37.46 1.94
1469 3371 6.611381 GCATGACAGACATAAGCAAGTAAAA 58.389 36.000 0.00 0.00 37.46 1.52
1470 3372 5.163864 CGCATGACAGACATAAGCAAGTAAA 60.164 40.000 0.00 0.00 37.46 2.01
1471 3373 4.329801 CGCATGACAGACATAAGCAAGTAA 59.670 41.667 0.00 0.00 37.46 2.24
1472 3374 3.865164 CGCATGACAGACATAAGCAAGTA 59.135 43.478 0.00 0.00 37.46 2.24
1473 3375 2.674852 CGCATGACAGACATAAGCAAGT 59.325 45.455 0.00 0.00 37.46 3.16
1474 3376 2.931969 TCGCATGACAGACATAAGCAAG 59.068 45.455 0.00 0.00 37.46 4.01
1481 3385 1.001293 ACACACTCGCATGACAGACAT 59.999 47.619 0.00 0.00 40.17 3.06
1493 3397 4.750098 ACATAGGAAAACAGAACACACTCG 59.250 41.667 0.00 0.00 0.00 4.18
1555 3459 6.951198 ACCCACATTTATTTCTGATTGGTACA 59.049 34.615 0.00 0.00 0.00 2.90
1605 3513 5.301551 GGGATGCATGGAATAATACACAACA 59.698 40.000 2.46 0.00 0.00 3.33
1606 3514 5.301551 TGGGATGCATGGAATAATACACAAC 59.698 40.000 2.46 0.00 0.00 3.32
1611 3519 6.815089 TGTTTTGGGATGCATGGAATAATAC 58.185 36.000 2.46 0.00 0.00 1.89
1752 4575 9.144747 GCACGTATAATCTATCATGAATCTTGT 57.855 33.333 0.00 0.00 0.00 3.16
1762 4601 4.830600 TGACAGGGCACGTATAATCTATCA 59.169 41.667 0.00 0.00 0.00 2.15
1785 4624 3.127548 GCCACTCGATTCATGTTGACAAT 59.872 43.478 0.00 0.00 0.00 2.71
1791 4630 2.198827 TTGGCCACTCGATTCATGTT 57.801 45.000 3.88 0.00 0.00 2.71
1797 4636 3.222603 AGTTTTCTTTGGCCACTCGATT 58.777 40.909 3.88 0.00 0.00 3.34
1856 4695 6.255950 GTCTGCATTTAATTCCCGTTAAGTC 58.744 40.000 0.00 0.00 0.00 3.01
1861 4700 3.697166 AGGTCTGCATTTAATTCCCGTT 58.303 40.909 0.00 0.00 0.00 4.44
1998 7592 1.328279 ATGTAGGCGATCGGTGATCA 58.672 50.000 18.30 0.00 38.84 2.92
2001 7595 0.104120 CCAATGTAGGCGATCGGTGA 59.896 55.000 18.30 0.00 0.00 4.02
2006 7600 1.488527 GACGACCAATGTAGGCGATC 58.511 55.000 0.00 0.00 34.07 3.69
2008 7602 1.514087 GGACGACCAATGTAGGCGA 59.486 57.895 0.00 0.00 35.97 5.54
2047 7641 2.819608 GAGTGAGCCAATTGTTTAGCCA 59.180 45.455 4.43 0.00 0.00 4.75
2052 7646 4.082787 CGTTATGGAGTGAGCCAATTGTTT 60.083 41.667 4.43 0.00 42.16 2.83
2057 7651 3.451178 AGTACGTTATGGAGTGAGCCAAT 59.549 43.478 0.00 0.00 42.16 3.16
2063 7657 6.594744 TGTCCTATAGTACGTTATGGAGTGA 58.405 40.000 0.00 0.00 0.00 3.41
2066 7660 6.854892 CGTTTGTCCTATAGTACGTTATGGAG 59.145 42.308 0.00 0.00 0.00 3.86
2069 7663 7.375280 CAGTCGTTTGTCCTATAGTACGTTATG 59.625 40.741 0.00 0.00 0.00 1.90
2085 7679 3.276846 GCCGTGGCAGTCGTTTGT 61.277 61.111 5.89 0.00 41.49 2.83
2101 7697 3.357079 CTCGTGGCTGGTGTTGGC 61.357 66.667 0.00 0.00 0.00 4.52
2104 7700 2.426023 GACCTCGTGGCTGGTGTT 59.574 61.111 2.76 0.00 36.59 3.32
2131 7727 1.956170 CGTCATAGACCCCGCATGC 60.956 63.158 7.91 7.91 0.00 4.06
2133 7729 0.828022 TTTCGTCATAGACCCCGCAT 59.172 50.000 0.00 0.00 0.00 4.73
2137 7733 2.223994 GGTAGCTTTCGTCATAGACCCC 60.224 54.545 0.00 0.00 0.00 4.95
2144 7740 1.406069 CCTGCAGGTAGCTTTCGTCAT 60.406 52.381 25.53 0.00 45.94 3.06
2145 7741 0.037326 CCTGCAGGTAGCTTTCGTCA 60.037 55.000 25.53 0.00 45.94 4.35
2148 7744 2.109126 GGCCTGCAGGTAGCTTTCG 61.109 63.158 32.81 5.52 45.94 3.46
2202 7798 2.665603 GCAGAGGAAGACGGCCTT 59.334 61.111 0.00 0.00 35.44 4.35
2210 7806 3.123620 GCGTGCAGGCAGAGGAAG 61.124 66.667 25.57 0.00 0.00 3.46
2247 7846 2.126463 ACCGTCGTCGCTGTCATG 60.126 61.111 0.00 0.00 35.54 3.07
2249 7848 2.726850 CTTCACCGTCGTCGCTGTCA 62.727 60.000 0.00 0.00 35.54 3.58
2251 7850 2.050351 CTTCACCGTCGTCGCTGT 60.050 61.111 0.00 0.00 35.54 4.40
2316 7915 1.006571 GCCGTCCAACTCGTCAAGA 60.007 57.895 0.00 0.00 0.00 3.02
2321 7920 4.029472 ATAGGCCGTCCAACTCGT 57.971 55.556 0.00 0.00 33.74 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.