AutoCloner

Multiple sequence alignment - TraesCS2B01G551300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G551300	chr2B	100.000	4149	0	0	566	4714	747236911	747241059	0.000000e+00	7662.0
1	TraesCS2B01G551300	chr2B	100.000	312	0	0	1	312	747236346	747236657	1.140000e-160	577.0
2	TraesCS2B01G551300	chr2B	77.931	145	21	7	4197	4333	53517369	53517228	3.910000e-11	80.5
3	TraesCS2B01G551300	chr2D	95.708	3681	103	25	566	4220	612364626	612368277	0.000000e+00	5871.0
4	TraesCS2B01G551300	chr2D	86.624	314	18	10	1	294	612363975	612364284	4.550000e-85	326.0
5	TraesCS2B01G551300	chr2D	82.517	143	14	9	4197	4333	32519649	32519512	1.070000e-21	115.0
6	TraesCS2B01G551300	chr2D	85.246	61	8	1	4195	4255	573910436	573910495	1.420000e-05	62.1
7	TraesCS2B01G551300	chr2A	94.443	3365	111	26	581	3930	744491640	744494943	0.000000e+00	5108.0
8	TraesCS2B01G551300	chr2A	86.392	801	77	18	3929	4714	744495214	744495997	0.000000e+00	846.0
9	TraesCS2B01G551300	chr2A	91.429	210	14	3	1	210	744491153	744491358	7.720000e-73	285.0
10	TraesCS2B01G551300	chr2A	82.270	141	17	7	4197	4333	35581709	35581573	1.070000e-21	115.0
11	TraesCS2B01G551300	chr3B	87.146	1307	148	13	984	2283	584811391	584812684	0.000000e+00	1465.0
12	TraesCS2B01G551300	chr3B	87.242	823	83	13	2771	3591	584813278	584814080	0.000000e+00	918.0
13	TraesCS2B01G551300	chr3B	86.667	405	45	4	2280	2678	584812778	584813179	1.560000e-119	440.0
14	TraesCS2B01G551300	chr3A	86.993	1307	150	13	984	2283	587635765	587637058	0.000000e+00	1454.0
15	TraesCS2B01G551300	chr3A	83.956	991	105	31	2771	3734	587637634	587638597	0.000000e+00	900.0
16	TraesCS2B01G551300	chr3A	87.286	409	41	6	2280	2678	587637139	587637546	1.550000e-124	457.0
17	TraesCS2B01G551300	chr3D	86.907	1306	153	11	984	2283	445858186	445859479	0.000000e+00	1448.0
18	TraesCS2B01G551300	chr3D	83.832	1336	154	40	2280	3591	445859573	445860870	0.000000e+00	1214.0
19	TraesCS2B01G551300	chr1A	85.757	1004	139	4	1283	2284	497243267	497242266	0.000000e+00	1059.0
20	TraesCS2B01G551300	chr1A	78.976	1308	204	60	2278	3564	497242176	497240919	0.000000e+00	826.0
21	TraesCS2B01G551300	chr1A	86.022	186	20	3	1098	1283	497243524	497243345	1.340000e-45	195.0
22	TraesCS2B01G551300	chr1D	85.458	1004	142	4	1283	2284	401134707	401133706	0.000000e+00	1042.0
23	TraesCS2B01G551300	chr1D	78.801	1401	212	69	2278	3646	401133630	401132283	0.000000e+00	863.0
24	TraesCS2B01G551300	chr1D	86.022	186	20	3	1098	1283	401134973	401134794	1.340000e-45	195.0
25	TraesCS2B01G551300	chr1B	85.159	1004	145	4	1283	2284	538868158	538867157	0.000000e+00	1026.0
26	TraesCS2B01G551300	chr1B	78.704	1404	216	67	2278	3646	538867077	538865722	0.000000e+00	859.0
27	TraesCS2B01G551300	chr1B	86.022	186	20	3	1098	1283	538868408	538868229	1.340000e-45	195.0
28	TraesCS2B01G551300	chr5D	76.011	371	73	13	1366	1728	531291688	531292050	1.350000e-40	178.0
29	TraesCS2B01G551300	chr4D	88.333	60	7	0	4196	4255	9339933	9339992	6.540000e-09	73.1
30	TraesCS2B01G551300	chr4A	82.143	84	15	0	3049	3132	641291417	641291334	6.540000e-09	73.1
31	TraesCS2B01G551300	chr6B	97.059	34	1	0	106	139	479080497	479080464	1.830000e-04	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G551300	chr2B	747236346	747241059	4713	False	4119.500000	7662	100.000000	1	4714	2	chr2B.!!$F1	4713
1	TraesCS2B01G551300	chr2D	612363975	612368277	4302	False	3098.500000	5871	91.166000	1	4220	2	chr2D.!!$F2	4219
2	TraesCS2B01G551300	chr2A	744491153	744495997	4844	False	2079.666667	5108	90.754667	1	4714	3	chr2A.!!$F1	4713
3	TraesCS2B01G551300	chr3B	584811391	584814080	2689	False	941.000000	1465	87.018333	984	3591	3	chr3B.!!$F1	2607
4	TraesCS2B01G551300	chr3A	587635765	587638597	2832	False	937.000000	1454	86.078333	984	3734	3	chr3A.!!$F1	2750
5	TraesCS2B01G551300	chr3D	445858186	445860870	2684	False	1331.000000	1448	85.369500	984	3591	2	chr3D.!!$F1	2607
6	TraesCS2B01G551300	chr1A	497240919	497243524	2605	True	693.333333	1059	83.585000	1098	3564	3	chr1A.!!$R1	2466
7	TraesCS2B01G551300	chr1D	401132283	401134973	2690	True	700.000000	1042	83.427000	1098	3646	3	chr1D.!!$R1	2548
8	TraesCS2B01G551300	chr1B	538865722	538868408	2686	True	693.333333	1026	83.295000	1098	3646	3	chr1B.!!$R1	2548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
868	959	0.391927	CTGTCTCTCTCCGTCGTCCT	60.392	60.000	0.00	0.00	3.85	F
1524	1709	0.749454	GCATCGCCACCTCCTTCATT	60.749	55.000	0.00	0.00	2.57	F
1980	2165	2.039787	TACGGGCTGGTCATCCCA	59.960	61.111	10.12	42.75	4.37	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
2813	3228	0.179111	CGTCGTGCATGGTCTGGTAT	60.179	55.0	5.98	0.0	2.73	R
3119	3534	0.615331	GCAAGATGGTGAGGGAGACA	59.385	55.0	0.00	0.0	3.41	R
3877	4347	2.015736	ATCGTTGATGAGTGAGCCAC	57.984	50.0	0.00	34.1	5.01	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
168	171	5.725110	ACTTCAAATCCGATTTCGAGATG	57.275	39.130	15.19	10.02	43.02	2.90
214	235	5.825593	AATCCAGAGGTGAAGTAAGACAA	57.174	39.130	0.00	0.00	0.00	3.18
226	247	8.552034	GGTGAAGTAAGACAATATTCATGCTAC	58.448	37.037	0.00	0.00	32.93	3.58
234	255	7.400439	AGACAATATTCATGCTACATATGCCT	58.600	34.615	1.58	0.00	0.00	4.75
307	328	8.480643	AGGAATTATAGAGCAATTATACACGC	57.519	34.615	0.00	0.00	0.00	5.34
308	329	8.094548	AGGAATTATAGAGCAATTATACACGCA	58.905	33.333	0.00	0.00	0.00	5.24
309	330	8.883731	GGAATTATAGAGCAATTATACACGCAT	58.116	33.333	0.00	0.00	0.00	4.73
653	744	1.180029	GCTGATGTTGGTGCCAGAAT	58.820	50.000	0.00	0.00	0.00	2.40
663	754	4.524802	TGGTGCCAGAATTAGGATGAAT	57.475	40.909	0.70	0.00	0.00	2.57
666	757	5.827797	TGGTGCCAGAATTAGGATGAATTAC	59.172	40.000	0.70	0.00	0.00	1.89
669	760	5.991606	TGCCAGAATTAGGATGAATTACTCG	59.008	40.000	0.70	0.00	0.00	4.18
670	761	5.992217	GCCAGAATTAGGATGAATTACTCGT	59.008	40.000	0.70	0.00	0.00	4.18
671	762	6.483640	GCCAGAATTAGGATGAATTACTCGTT	59.516	38.462	0.70	0.00	0.00	3.85
767	858	3.782656	ACTAAGGTGACCGGTCAAAAT	57.217	42.857	37.75	26.40	41.85	1.82
806	897	2.434359	CAACTCCGAAGTCCCCGC	60.434	66.667	0.00	0.00	33.48	6.13
821	912	2.179517	CGCGAGGAAAGCTCGTCT	59.820	61.111	0.00	0.00	45.08	4.18
823	914	2.448705	GCGAGGAAAGCTCGTCTGC	61.449	63.158	0.00	0.00	45.08	4.26
825	916	0.667487	CGAGGAAAGCTCGTCTGCAA	60.667	55.000	0.00	0.00	39.25	4.08
826	917	0.793250	GAGGAAAGCTCGTCTGCAAC	59.207	55.000	0.00	0.00	34.31	4.17
827	918	0.394565	AGGAAAGCTCGTCTGCAACT	59.605	50.000	0.00	0.00	34.99	3.16
828	919	1.618837	AGGAAAGCTCGTCTGCAACTA	59.381	47.619	0.00	0.00	34.99	2.24
829	920	2.037251	AGGAAAGCTCGTCTGCAACTAA	59.963	45.455	0.00	0.00	34.99	2.24
830	921	2.413453	GGAAAGCTCGTCTGCAACTAAG	59.587	50.000	0.00	0.00	34.99	2.18
845	936	2.702748	ACTAAGGTGACCACTTTCCCT	58.297	47.619	3.63	0.00	32.66	4.20
868	959	0.391927	CTGTCTCTCTCCGTCGTCCT	60.392	60.000	0.00	0.00	0.00	3.85
871	962	1.078356	CTCTCTCCGTCGTCCTCCA	60.078	63.158	0.00	0.00	0.00	3.86
1083	1178	4.673298	AATGCGTCGACGGCCACA	62.673	61.111	36.13	25.88	40.23	4.17
1524	1709	0.749454	GCATCGCCACCTCCTTCATT	60.749	55.000	0.00	0.00	0.00	2.57
1980	2165	2.039787	TACGGGCTGGTCATCCCA	59.960	61.111	10.12	0.00	42.75	4.37
1986	2171	2.046023	CTGGTCATCCCAAGCGCA	60.046	61.111	11.47	0.00	44.65	6.09
2034	2219	2.126031	GAGGACTTCGTCACCGGC	60.126	66.667	0.00	0.00	33.68	6.13
2493	2876	4.299547	TCCGTGCTGTCGCTGCTT	62.300	61.111	0.00	0.00	36.97	3.91
2679	3071	2.161808	CGCCTTTGAGAACTACGAGAGA	59.838	50.000	0.00	0.00	0.00	3.10
2682	3074	4.728534	CCTTTGAGAACTACGAGAGACTG	58.271	47.826	0.00	0.00	0.00	3.51
2685	3077	2.994578	TGAGAACTACGAGAGACTGACG	59.005	50.000	0.00	0.00	0.00	4.35
2858	3273	2.281484	GTGCTGGCCGAGGACAAA	60.281	61.111	17.64	0.00	42.51	2.83
3147	3562	0.036010	CACCATCTTGCGGTTCCTCT	60.036	55.000	0.00	0.00	33.25	3.69
3336	3760	0.323629	CAACCCCACCATCACGTACT	59.676	55.000	0.00	0.00	0.00	2.73
3345	3769	1.275291	CCATCACGTACTTGGACAGGT	59.725	52.381	4.95	0.00	31.94	4.00
3422	3846	1.226974	CGAGCTGTACATCGTGGGG	60.227	63.158	10.10	0.00	34.30	4.96
3877	4347	3.063997	GTGAACGGTGAGATTATTGGCTG	59.936	47.826	0.00	0.00	0.00	4.85
3878	4348	3.270877	GAACGGTGAGATTATTGGCTGT	58.729	45.455	0.00	0.00	0.00	4.40
3879	4349	2.632377	ACGGTGAGATTATTGGCTGTG	58.368	47.619	0.00	0.00	0.00	3.66
3880	4350	1.942657	CGGTGAGATTATTGGCTGTGG	59.057	52.381	0.00	0.00	0.00	4.17
3881	4351	1.678101	GGTGAGATTATTGGCTGTGGC	59.322	52.381	0.00	0.00	37.82	5.01
3882	4352	2.648059	GTGAGATTATTGGCTGTGGCT	58.352	47.619	0.00	0.00	38.73	4.75
3883	4353	2.615912	GTGAGATTATTGGCTGTGGCTC	59.384	50.000	0.00	0.00	38.73	4.70
3894	4364	1.073964	CTGTGGCTCACTCATCAACG	58.926	55.000	6.83	0.00	35.11	4.10
3915	4385	4.163078	ACGATTTCCAGGTGATCAATCTCT	59.837	41.667	0.00	0.00	0.00	3.10
3965	4707	8.940952	GCTAGATGTAAGTTGACTGATTTTCTT	58.059	33.333	0.00	0.00	0.00	2.52
3981	4723	7.039882	TGATTTTCTTATTAGGGTCAGTCGAC	58.960	38.462	7.70	7.70	41.80	4.20
4019	4764	2.467826	GCTCCAAGATGCGTGCTCC	61.468	63.158	0.00	0.00	0.00	4.70
4025	4770	0.392193	AAGATGCGTGCTCCTCCTTG	60.392	55.000	0.00	0.00	0.00	3.61
4026	4771	1.078848	GATGCGTGCTCCTCCTTGT	60.079	57.895	0.00	0.00	0.00	3.16
4028	4773	0.250901	ATGCGTGCTCCTCCTTGTTT	60.251	50.000	0.00	0.00	0.00	2.83
4029	4774	0.884704	TGCGTGCTCCTCCTTGTTTC	60.885	55.000	0.00	0.00	0.00	2.78
4032	4777	1.801178	CGTGCTCCTCCTTGTTTCTTC	59.199	52.381	0.00	0.00	0.00	2.87
4039	4784	5.300539	GCTCCTCCTTGTTTCTTCTTTTCTT	59.699	40.000	0.00	0.00	0.00	2.52
4042	4787	8.134202	TCCTCCTTGTTTCTTCTTTTCTTTTT	57.866	30.769	0.00	0.00	0.00	1.94
4045	4790	9.855021	CTCCTTGTTTCTTCTTTTCTTTTTGTA	57.145	29.630	0.00	0.00	0.00	2.41
4076	4821	0.965439	TTTGGGCTGAAATGTTCCGG	59.035	50.000	0.00	0.00	0.00	5.14
4077	4822	0.178975	TTGGGCTGAAATGTTCCGGT	60.179	50.000	0.00	0.00	0.00	5.28
4111	4856	0.651031	GCTCGGTCGTTCCTTATTGC	59.349	55.000	0.00	0.00	0.00	3.56
4148	4893	6.663944	ACACGATTTCTTATAGGCTTGTTC	57.336	37.500	0.00	0.00	0.00	3.18
4226	4971	4.118168	AGTTTTGGGATGTTGGATGAGT	57.882	40.909	0.00	0.00	0.00	3.41
4283	5028	9.850628	GTGTGTCTAAGTTATATTAGTGTGTGA	57.149	33.333	0.00	0.00	34.87	3.58
4349	5096	7.417612	AGTGCAATTACAGTACAAAGTTCAAG	58.582	34.615	0.00	0.00	0.00	3.02
4350	5097	7.067008	AGTGCAATTACAGTACAAAGTTCAAGT	59.933	33.333	0.00	0.00	0.00	3.16
4351	5098	7.700656	GTGCAATTACAGTACAAAGTTCAAGTT	59.299	33.333	0.00	0.00	0.00	2.66
4525	5283	3.875838	TTTTTGGCGGAATTCCACG	57.124	47.368	24.09	12.07	35.14	4.94
4528	5286	0.808125	TTTGGCGGAATTCCACGATG	59.192	50.000	24.09	8.52	35.14	3.84
4595	5354	8.615211	CACATTGTGTGCAAATACTATCACTAT	58.385	33.333	8.69	0.00	41.89	2.12
4658	5417	7.667219	AGCAATAGCAATAGCAATACCACTAAT	59.333	33.333	0.00	0.00	45.49	1.73
4664	5423	7.013655	AGCAATAGCAATACCACTAATTCAAGG	59.986	37.037	0.00	0.00	45.49	3.61
4667	5426	9.474313	AATAGCAATACCACTAATTCAAGGAAA	57.526	29.630	0.00	0.00	0.00	3.13

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
45	48	9.656040	ATTTTTGTGTAGTTGTATCACGGTATA	57.344	29.630	0.00	0.00	35.20	1.47
641	732	4.314522	TTCATCCTAATTCTGGCACCAA	57.685	40.909	0.00	0.00	0.00	3.67
653	744	5.983720	GCTGCTAACGAGTAATTCATCCTAA	59.016	40.000	0.00	0.00	0.00	2.69
819	910	2.047061	AGTGGTCACCTTAGTTGCAGA	58.953	47.619	0.00	0.00	0.00	4.26
821	912	3.211045	GAAAGTGGTCACCTTAGTTGCA	58.789	45.455	0.00	0.00	0.00	4.08
823	914	3.146847	GGGAAAGTGGTCACCTTAGTTG	58.853	50.000	0.00	0.00	0.00	3.16
825	916	2.638363	GAGGGAAAGTGGTCACCTTAGT	59.362	50.000	0.00	0.00	0.00	2.24
826	917	2.353803	CGAGGGAAAGTGGTCACCTTAG	60.354	54.545	0.00	0.00	0.00	2.18
827	918	1.621814	CGAGGGAAAGTGGTCACCTTA	59.378	52.381	0.00	0.00	0.00	2.69
828	919	0.396811	CGAGGGAAAGTGGTCACCTT	59.603	55.000	0.00	0.00	0.00	3.50
829	920	0.763223	ACGAGGGAAAGTGGTCACCT	60.763	55.000	0.00	0.00	0.00	4.00
830	921	0.320508	GACGAGGGAAAGTGGTCACC	60.321	60.000	0.00	0.00	0.00	4.02
845	936	0.736672	CGACGGAGAGAGACAGACGA	60.737	60.000	0.00	0.00	0.00	4.20
868	959	4.842292	CGCAGCTAGCTGAATGGA	57.158	55.556	41.87	0.00	46.30	3.41
1083	1178	2.190841	CACCGGGTTGAACGCCTTT	61.191	57.895	6.32	0.00	0.00	3.11
1110	1205	0.545646	TGGTCATCATCATGGGCGAA	59.454	50.000	0.00	0.00	0.00	4.70
1455	1640	3.645286	GCGACAAACACCGCCTTA	58.355	55.556	0.00	0.00	45.06	2.69
1524	1709	2.112297	GACACCTGGTGCCGGAAA	59.888	61.111	26.20	0.00	36.98	3.13
2034	2219	2.042435	AAGAGCGGGAGGAGGAGG	60.042	66.667	0.00	0.00	0.00	4.30
2308	2691	2.666190	CACCGACACCAGCACCAG	60.666	66.667	0.00	0.00	0.00	4.00
2493	2876	2.283529	GGACGGGTTGGAGAGCTCA	61.284	63.158	17.77	0.00	0.00	4.26
2682	3074	1.956170	CTGTGTGCACTGACCCGTC	60.956	63.158	19.41	0.00	32.81	4.79
2685	3077	2.111878	AGCTGTGTGCACTGACCC	59.888	61.111	19.41	2.98	45.94	4.46
2813	3228	0.179111	CGTCGTGCATGGTCTGGTAT	60.179	55.000	5.98	0.00	0.00	2.73
2858	3273	1.729484	CACGATGAGCGACACGTGT	60.729	57.895	23.64	23.64	42.65	4.49
2963	3378	2.610859	ACCGAGCATGGGGAGGTT	60.611	61.111	0.00	0.00	38.89	3.50
3119	3534	0.615331	GCAAGATGGTGAGGGAGACA	59.385	55.000	0.00	0.00	0.00	3.41
3336	3760	3.948719	GGCCACCGACCTGTCCAA	61.949	66.667	0.00	0.00	0.00	3.53
3345	3769	4.680237	CTCGCTGTTGGCCACCGA	62.680	66.667	3.88	10.89	37.74	4.69
3877	4347	2.015736	ATCGTTGATGAGTGAGCCAC	57.984	50.000	0.00	0.00	34.10	5.01
3878	4348	2.768253	AATCGTTGATGAGTGAGCCA	57.232	45.000	0.00	0.00	0.00	4.75
3879	4349	2.352960	GGAAATCGTTGATGAGTGAGCC	59.647	50.000	0.00	0.00	0.00	4.70
3880	4350	3.002791	TGGAAATCGTTGATGAGTGAGC	58.997	45.455	0.00	0.00	0.00	4.26
3881	4351	3.620374	CCTGGAAATCGTTGATGAGTGAG	59.380	47.826	0.00	0.00	0.00	3.51
3882	4352	3.007940	ACCTGGAAATCGTTGATGAGTGA	59.992	43.478	0.00	0.00	0.00	3.41
3883	4353	3.125829	CACCTGGAAATCGTTGATGAGTG	59.874	47.826	0.00	0.00	0.00	3.51
3894	4364	5.678583	TCAGAGATTGATCACCTGGAAATC	58.321	41.667	0.00	3.41	33.49	2.17
3915	4385	7.829211	AGCTAAAGTGCTAATTTATCTGGTTCA	59.171	33.333	0.00	0.00	42.10	3.18
3992	4737	1.065701	GCATCTTGGAGCAGCAATCAG	59.934	52.381	0.00	0.00	0.00	2.90
3997	4742	2.036571	CACGCATCTTGGAGCAGCA	61.037	57.895	0.00	0.00	0.00	4.41
4019	4764	8.763049	ACAAAAAGAAAAGAAGAAACAAGGAG	57.237	30.769	0.00	0.00	0.00	3.69
4039	4784	6.266558	AGCCCAAAACATGACAGTATACAAAA	59.733	34.615	5.50	0.00	0.00	2.44
4042	4787	4.699735	CAGCCCAAAACATGACAGTATACA	59.300	41.667	5.50	0.00	0.00	2.29
4045	4790	4.032960	TCAGCCCAAAACATGACAGTAT	57.967	40.909	0.00	0.00	0.00	2.12
4076	4821	0.586802	GAGCCGAAACAGTGGTCAAC	59.413	55.000	0.00	0.00	0.00	3.18
4077	4822	0.878523	CGAGCCGAAACAGTGGTCAA	60.879	55.000	0.00	0.00	0.00	3.18
4111	4856	3.165498	GTGTAACGGGCTTCAGCG	58.835	61.111	0.00	0.00	43.26	5.18
4226	4971	7.422878	TGATACTTGCGTGTTTACATTTACA	57.577	32.000	0.00	0.00	0.00	2.41
4277	5022	6.923012	AGCATATAACAGCAATTTTCACACA	58.077	32.000	0.00	0.00	0.00	3.72
4278	5023	7.816945	AAGCATATAACAGCAATTTTCACAC	57.183	32.000	0.00	0.00	0.00	3.82
4321	5068	7.913297	TGAACTTTGTACTGTAATTGCACTTTC	59.087	33.333	0.00	0.00	0.00	2.62
4324	5071	6.935741	TGAACTTTGTACTGTAATTGCACT	57.064	33.333	0.00	0.00	0.00	4.40
4333	5080	9.968870	TTTAAAACAACTTGAACTTTGTACTGT	57.031	25.926	0.00	0.00	34.82	3.55
4475	5223	7.722949	TCCCAAGAAGAAATGAATTAGCATT	57.277	32.000	0.00	0.00	40.04	3.56
4477	5225	7.233348	AGTTTCCCAAGAAGAAATGAATTAGCA	59.767	33.333	0.00	0.00	35.77	3.49
4478	5226	7.606349	AGTTTCCCAAGAAGAAATGAATTAGC	58.394	34.615	0.00	0.00	35.77	3.09
4510	5268	0.035915	TCATCGTGGAATTCCGCCAA	60.036	50.000	28.13	18.65	43.41	4.52
4511	5269	0.180171	ATCATCGTGGAATTCCGCCA	59.820	50.000	28.13	19.06	43.41	5.69
4634	5393	9.831737	GAATTAGTGGTATTGCTATTGCTATTG	57.168	33.333	1.31	0.00	40.48	1.90

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.