Multiple sequence alignment - TraesCS2B01G551100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G551100 chr2B 100.000 3932 0 0 1 3932 747176944 747180875 0.000000e+00 7262.0
1 TraesCS2B01G551100 chr2B 87.736 106 11 2 1692 1796 728343411 728343307 5.340000e-24 122.0
2 TraesCS2B01G551100 chr2B 88.298 94 9 2 1699 1791 74002831 74002923 1.150000e-20 111.0
3 TraesCS2B01G551100 chr2D 92.572 2154 125 21 1811 3932 612341967 612344117 0.000000e+00 3059.0
4 TraesCS2B01G551100 chr2D 88.404 871 73 16 694 1563 612340906 612341749 0.000000e+00 1024.0
5 TraesCS2B01G551100 chr2D 94.839 155 7 1 1549 1702 612341799 612341953 1.410000e-59 241.0
6 TraesCS2B01G551100 chr2A 93.407 1547 62 18 2416 3932 744447536 744449072 0.000000e+00 2255.0
7 TraesCS2B01G551100 chr2A 88.337 463 41 4 1228 1681 744446526 744446984 9.610000e-151 544.0
8 TraesCS2B01G551100 chr2A 87.955 440 44 5 311 748 744445376 744445808 9.750000e-141 510.0
9 TraesCS2B01G551100 chr2A 92.105 342 25 1 817 1158 744445828 744446167 7.640000e-132 481.0
10 TraesCS2B01G551100 chr2A 88.785 214 19 5 1995 2207 744447104 744447313 1.400000e-64 257.0
11 TraesCS2B01G551100 chr2A 94.937 79 4 0 1157 1235 744446226 744446304 1.480000e-24 124.0
12 TraesCS2B01G551100 chr7D 82.933 375 38 9 3319 3689 618084466 618084818 8.200000e-82 315.0
13 TraesCS2B01G551100 chr7D 89.412 85 5 2 3328 3412 618084013 618084093 1.930000e-18 104.0
14 TraesCS2B01G551100 chr7A 80.769 312 26 18 3312 3619 711814181 711814462 3.080000e-51 213.0
15 TraesCS2B01G551100 chr7A 89.655 87 5 2 3328 3414 711813797 711813879 1.490000e-19 108.0
16 TraesCS2B01G551100 chr5B 91.597 119 10 0 3814 3932 382332611 382332729 8.740000e-37 165.0
17 TraesCS2B01G551100 chr5D 92.632 95 7 0 1700 1794 530605394 530605300 1.910000e-28 137.0
18 TraesCS2B01G551100 chr6D 89.796 98 8 1 1701 1798 282138130 282138035 1.480000e-24 124.0
19 TraesCS2B01G551100 chr7B 89.474 95 8 2 1701 1794 533775323 533775230 6.900000e-23 119.0
20 TraesCS2B01G551100 chr3D 88.000 100 12 0 1698 1797 2379923 2379824 6.900000e-23 119.0
21 TraesCS2B01G551100 chr3D 93.478 46 2 1 3887 3932 446065105 446065061 2.540000e-07 67.6
22 TraesCS2B01G551100 chr1B 89.362 94 10 0 1701 1794 302512176 302512083 6.900000e-23 119.0
23 TraesCS2B01G551100 chr1B 88.776 98 9 2 1701 1798 524394771 524394676 6.900000e-23 119.0
24 TraesCS2B01G551100 chr1B 87.755 98 10 2 1698 1794 554988791 554988887 3.210000e-21 113.0
25 TraesCS2B01G551100 chr3A 73.764 263 53 12 3568 3828 587878704 587878456 5.410000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G551100 chr2B 747176944 747180875 3931 False 7262.000000 7262 100.000000 1 3932 1 chr2B.!!$F2 3931
1 TraesCS2B01G551100 chr2D 612340906 612344117 3211 False 1441.333333 3059 91.938333 694 3932 3 chr2D.!!$F1 3238
2 TraesCS2B01G551100 chr2A 744445376 744449072 3696 False 695.166667 2255 90.921000 311 3932 6 chr2A.!!$F1 3621
3 TraesCS2B01G551100 chr7D 618084013 618084818 805 False 209.500000 315 86.172500 3319 3689 2 chr7D.!!$F1 370

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
231 232 0.034756 TGCGCTGGTTTTCTGCTAGA 59.965 50.000 9.73 0.00 38.06 2.43 F
542 545 0.253044 GTGGAGAGCTATTGCCCACA 59.747 55.000 16.80 1.49 43.68 4.17 F
722 725 1.272490 TGCTTGTAGGGAAGACAGACG 59.728 52.381 0.00 0.00 0.00 4.18 F
1622 1987 2.642171 TGACTGTCCCCTACATTCCT 57.358 50.000 5.17 0.00 37.05 3.36 F
1970 2335 1.120530 ACTGGTGTCGTCCTTCAAGT 58.879 50.000 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 2149 0.112801 ATCGGGCTACTACTCCCTCC 59.887 60.000 0.00 0.0 40.41 4.30 R
1786 2151 0.851469 TCATCGGGCTACTACTCCCT 59.149 55.000 0.00 0.0 40.41 4.20 R
1787 2152 0.960286 GTCATCGGGCTACTACTCCC 59.040 60.000 0.00 0.0 39.17 4.30 R
2727 3206 1.550072 TCGTCCACTGATCTGATTGCA 59.450 47.619 6.60 0.0 0.00 4.08 R
3651 4609 0.723981 GCTGCAAGATCTTCGTCCAC 59.276 55.000 4.57 0.0 34.07 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.821616 ATCTGTCTGTTAGGAATCAGGATT 57.178 37.500 0.00 0.00 33.13 3.01
24 25 6.627087 TCTGTCTGTTAGGAATCAGGATTT 57.373 37.500 0.00 0.00 33.13 2.17
25 26 7.020827 TCTGTCTGTTAGGAATCAGGATTTT 57.979 36.000 0.00 0.00 33.13 1.82
26 27 6.881065 TCTGTCTGTTAGGAATCAGGATTTTG 59.119 38.462 0.00 0.00 33.13 2.44
27 28 5.415701 TGTCTGTTAGGAATCAGGATTTTGC 59.584 40.000 0.00 0.00 33.13 3.68
28 29 5.649831 GTCTGTTAGGAATCAGGATTTTGCT 59.350 40.000 0.00 0.00 33.13 3.91
29 30 5.882557 TCTGTTAGGAATCAGGATTTTGCTC 59.117 40.000 0.00 0.00 33.13 4.26
30 31 4.635765 TGTTAGGAATCAGGATTTTGCTCG 59.364 41.667 0.00 0.00 0.00 5.03
31 32 3.634397 AGGAATCAGGATTTTGCTCGA 57.366 42.857 0.00 0.00 0.00 4.04
32 33 4.162040 AGGAATCAGGATTTTGCTCGAT 57.838 40.909 0.00 0.00 0.00 3.59
33 34 4.530875 AGGAATCAGGATTTTGCTCGATT 58.469 39.130 0.00 0.00 0.00 3.34
34 35 4.952335 AGGAATCAGGATTTTGCTCGATTT 59.048 37.500 0.00 0.00 0.00 2.17
35 36 5.039333 GGAATCAGGATTTTGCTCGATTTG 58.961 41.667 0.00 0.00 0.00 2.32
36 37 4.644103 ATCAGGATTTTGCTCGATTTGG 57.356 40.909 0.00 0.00 0.00 3.28
37 38 2.164219 TCAGGATTTTGCTCGATTTGGC 59.836 45.455 0.00 0.00 0.00 4.52
38 39 1.478105 AGGATTTTGCTCGATTTGGCC 59.522 47.619 0.00 0.00 0.00 5.36
39 40 1.548986 GATTTTGCTCGATTTGGCCG 58.451 50.000 0.00 0.00 0.00 6.13
40 41 0.173255 ATTTTGCTCGATTTGGCCGG 59.827 50.000 0.00 0.00 0.00 6.13
41 42 2.485188 TTTTGCTCGATTTGGCCGGC 62.485 55.000 21.18 21.18 0.00 6.13
42 43 3.918253 TTGCTCGATTTGGCCGGCT 62.918 57.895 28.56 5.85 0.00 5.52
43 44 2.203015 GCTCGATTTGGCCGGCTA 60.203 61.111 28.56 19.98 0.00 3.93
44 45 1.817941 GCTCGATTTGGCCGGCTAA 60.818 57.895 28.56 25.60 0.00 3.09
45 46 2.014594 CTCGATTTGGCCGGCTAAC 58.985 57.895 26.32 13.87 0.00 2.34
46 47 1.762222 CTCGATTTGGCCGGCTAACG 61.762 60.000 26.32 24.80 43.80 3.18
47 48 2.104253 CGATTTGGCCGGCTAACGT 61.104 57.895 26.32 16.85 42.24 3.99
48 49 1.427819 GATTTGGCCGGCTAACGTG 59.572 57.895 26.32 0.00 42.24 4.49
49 50 1.302993 ATTTGGCCGGCTAACGTGT 60.303 52.632 26.32 8.85 42.24 4.49
50 51 1.582610 ATTTGGCCGGCTAACGTGTG 61.583 55.000 26.32 0.00 42.24 3.82
53 54 3.047877 GCCGGCTAACGTGTGCTT 61.048 61.111 22.15 0.00 42.24 3.91
54 55 1.738830 GCCGGCTAACGTGTGCTTA 60.739 57.895 22.15 0.00 42.24 3.09
55 56 1.963190 GCCGGCTAACGTGTGCTTAC 61.963 60.000 22.15 0.00 42.24 2.34
56 57 0.668096 CCGGCTAACGTGTGCTTACA 60.668 55.000 11.85 0.00 42.24 2.41
57 58 1.355971 CGGCTAACGTGTGCTTACAT 58.644 50.000 11.85 0.00 37.93 2.29
58 59 1.730064 CGGCTAACGTGTGCTTACATT 59.270 47.619 11.85 0.00 37.93 2.71
59 60 2.924926 CGGCTAACGTGTGCTTACATTA 59.075 45.455 11.85 0.00 37.93 1.90
60 61 3.000078 CGGCTAACGTGTGCTTACATTAG 60.000 47.826 11.85 3.48 37.93 1.73
61 62 3.930848 GGCTAACGTGTGCTTACATTAGT 59.069 43.478 11.85 0.00 0.00 2.24
62 63 4.390909 GGCTAACGTGTGCTTACATTAGTT 59.609 41.667 11.85 0.00 0.00 2.24
63 64 5.313623 GCTAACGTGTGCTTACATTAGTTG 58.686 41.667 5.88 0.00 0.00 3.16
64 65 5.119588 GCTAACGTGTGCTTACATTAGTTGA 59.880 40.000 5.88 0.00 0.00 3.18
65 66 6.183360 GCTAACGTGTGCTTACATTAGTTGAT 60.183 38.462 5.88 0.00 0.00 2.57
66 67 6.554334 AACGTGTGCTTACATTAGTTGATT 57.446 33.333 0.00 0.00 0.00 2.57
67 68 7.661127 AACGTGTGCTTACATTAGTTGATTA 57.339 32.000 0.00 0.00 0.00 1.75
68 69 7.843490 ACGTGTGCTTACATTAGTTGATTAT 57.157 32.000 0.00 0.00 0.00 1.28
69 70 8.263940 ACGTGTGCTTACATTAGTTGATTATT 57.736 30.769 0.00 0.00 0.00 1.40
70 71 9.373603 ACGTGTGCTTACATTAGTTGATTATTA 57.626 29.630 0.00 0.00 0.00 0.98
71 72 9.849607 CGTGTGCTTACATTAGTTGATTATTAG 57.150 33.333 0.00 0.00 0.00 1.73
80 81 9.314321 ACATTAGTTGATTATTAGTGTCTTCGG 57.686 33.333 0.00 0.00 0.00 4.30
81 82 9.314321 CATTAGTTGATTATTAGTGTCTTCGGT 57.686 33.333 0.00 0.00 0.00 4.69
82 83 9.886132 ATTAGTTGATTATTAGTGTCTTCGGTT 57.114 29.630 0.00 0.00 0.00 4.44
83 84 9.715121 TTAGTTGATTATTAGTGTCTTCGGTTT 57.285 29.630 0.00 0.00 0.00 3.27
85 86 9.886132 AGTTGATTATTAGTGTCTTCGGTTTAT 57.114 29.630 0.00 0.00 0.00 1.40
89 90 9.434559 GATTATTAGTGTCTTCGGTTTATTTGC 57.565 33.333 0.00 0.00 0.00 3.68
90 91 5.616488 TTAGTGTCTTCGGTTTATTTGCC 57.384 39.130 0.00 0.00 0.00 4.52
91 92 3.751518 AGTGTCTTCGGTTTATTTGCCT 58.248 40.909 0.00 0.00 0.00 4.75
92 93 4.142038 AGTGTCTTCGGTTTATTTGCCTT 58.858 39.130 0.00 0.00 0.00 4.35
93 94 4.215613 AGTGTCTTCGGTTTATTTGCCTTC 59.784 41.667 0.00 0.00 0.00 3.46
94 95 3.187637 TGTCTTCGGTTTATTTGCCTTCG 59.812 43.478 0.00 0.00 0.00 3.79
95 96 3.187842 GTCTTCGGTTTATTTGCCTTCGT 59.812 43.478 0.00 0.00 0.00 3.85
96 97 3.187637 TCTTCGGTTTATTTGCCTTCGTG 59.812 43.478 0.00 0.00 0.00 4.35
97 98 2.768698 TCGGTTTATTTGCCTTCGTGA 58.231 42.857 0.00 0.00 0.00 4.35
98 99 3.340034 TCGGTTTATTTGCCTTCGTGAT 58.660 40.909 0.00 0.00 0.00 3.06
99 100 3.126171 TCGGTTTATTTGCCTTCGTGATG 59.874 43.478 0.00 0.00 0.00 3.07
100 101 3.119990 CGGTTTATTTGCCTTCGTGATGT 60.120 43.478 0.00 0.00 0.00 3.06
101 102 4.165779 GGTTTATTTGCCTTCGTGATGTG 58.834 43.478 0.00 0.00 0.00 3.21
102 103 4.320935 GGTTTATTTGCCTTCGTGATGTGT 60.321 41.667 0.00 0.00 0.00 3.72
103 104 2.995466 ATTTGCCTTCGTGATGTGTG 57.005 45.000 0.00 0.00 0.00 3.82
104 105 1.960417 TTTGCCTTCGTGATGTGTGA 58.040 45.000 0.00 0.00 0.00 3.58
105 106 2.183478 TTGCCTTCGTGATGTGTGAT 57.817 45.000 0.00 0.00 0.00 3.06
106 107 2.183478 TGCCTTCGTGATGTGTGATT 57.817 45.000 0.00 0.00 0.00 2.57
107 108 2.076100 TGCCTTCGTGATGTGTGATTC 58.924 47.619 0.00 0.00 0.00 2.52
108 109 2.076100 GCCTTCGTGATGTGTGATTCA 58.924 47.619 0.00 0.00 0.00 2.57
109 110 2.159653 GCCTTCGTGATGTGTGATTCAC 60.160 50.000 9.93 9.93 46.31 3.18
110 111 3.329386 CCTTCGTGATGTGTGATTCACT 58.671 45.455 17.26 0.00 46.27 3.41
111 112 3.369147 CCTTCGTGATGTGTGATTCACTC 59.631 47.826 17.26 14.06 46.27 3.51
112 113 3.942130 TCGTGATGTGTGATTCACTCT 57.058 42.857 17.26 4.82 46.27 3.24
113 114 4.257267 TCGTGATGTGTGATTCACTCTT 57.743 40.909 17.26 11.74 46.27 2.85
114 115 5.385509 TCGTGATGTGTGATTCACTCTTA 57.614 39.130 17.26 0.48 46.27 2.10
115 116 5.778862 TCGTGATGTGTGATTCACTCTTAA 58.221 37.500 17.26 3.47 46.27 1.85
116 117 5.633601 TCGTGATGTGTGATTCACTCTTAAC 59.366 40.000 17.26 13.18 46.27 2.01
117 118 5.635280 CGTGATGTGTGATTCACTCTTAACT 59.365 40.000 17.26 0.00 46.27 2.24
118 119 6.806739 CGTGATGTGTGATTCACTCTTAACTA 59.193 38.462 17.26 0.00 46.27 2.24
119 120 7.008719 CGTGATGTGTGATTCACTCTTAACTAG 59.991 40.741 17.26 0.00 46.27 2.57
120 121 7.815068 GTGATGTGTGATTCACTCTTAACTAGT 59.185 37.037 17.26 0.00 46.27 2.57
121 122 8.029522 TGATGTGTGATTCACTCTTAACTAGTC 58.970 37.037 17.26 7.67 46.27 2.59
122 123 7.526142 TGTGTGATTCACTCTTAACTAGTCT 57.474 36.000 17.26 0.00 46.27 3.24
123 124 7.371159 TGTGTGATTCACTCTTAACTAGTCTG 58.629 38.462 17.26 0.00 46.27 3.51
124 125 7.014326 TGTGTGATTCACTCTTAACTAGTCTGT 59.986 37.037 17.26 0.00 46.27 3.41
125 126 7.327275 GTGTGATTCACTCTTAACTAGTCTGTG 59.673 40.741 17.26 1.93 43.13 3.66
126 127 6.309251 GTGATTCACTCTTAACTAGTCTGTGC 59.691 42.308 9.59 0.00 0.00 4.57
127 128 6.209589 TGATTCACTCTTAACTAGTCTGTGCT 59.790 38.462 0.00 0.00 0.00 4.40
128 129 5.630661 TCACTCTTAACTAGTCTGTGCTC 57.369 43.478 0.00 0.00 0.00 4.26
129 130 5.317808 TCACTCTTAACTAGTCTGTGCTCT 58.682 41.667 0.00 0.00 0.00 4.09
130 131 5.182190 TCACTCTTAACTAGTCTGTGCTCTG 59.818 44.000 0.00 0.00 0.00 3.35
131 132 5.182190 CACTCTTAACTAGTCTGTGCTCTGA 59.818 44.000 0.00 0.00 0.00 3.27
132 133 5.949354 ACTCTTAACTAGTCTGTGCTCTGAT 59.051 40.000 0.00 0.00 0.00 2.90
133 134 6.094881 ACTCTTAACTAGTCTGTGCTCTGATC 59.905 42.308 0.00 0.00 0.00 2.92
134 135 6.184068 TCTTAACTAGTCTGTGCTCTGATCT 58.816 40.000 0.00 2.05 0.00 2.75
135 136 4.981806 AACTAGTCTGTGCTCTGATCTC 57.018 45.455 0.00 0.00 0.00 2.75
136 137 3.961849 ACTAGTCTGTGCTCTGATCTCA 58.038 45.455 0.00 0.00 0.00 3.27
137 138 4.535781 ACTAGTCTGTGCTCTGATCTCAT 58.464 43.478 0.00 0.00 0.00 2.90
138 139 4.955450 ACTAGTCTGTGCTCTGATCTCATT 59.045 41.667 0.00 0.00 0.00 2.57
139 140 4.389890 AGTCTGTGCTCTGATCTCATTC 57.610 45.455 0.00 0.00 0.00 2.67
140 141 3.768215 AGTCTGTGCTCTGATCTCATTCA 59.232 43.478 0.00 0.00 0.00 2.57
141 142 3.864583 GTCTGTGCTCTGATCTCATTCAC 59.135 47.826 0.00 0.00 0.00 3.18
142 143 3.512724 TCTGTGCTCTGATCTCATTCACA 59.487 43.478 0.00 1.76 32.53 3.58
143 144 4.161754 TCTGTGCTCTGATCTCATTCACAT 59.838 41.667 0.00 0.00 32.82 3.21
144 145 4.189231 TGTGCTCTGATCTCATTCACATG 58.811 43.478 0.00 0.00 30.30 3.21
145 146 4.190001 GTGCTCTGATCTCATTCACATGT 58.810 43.478 0.00 0.00 0.00 3.21
146 147 5.105228 TGTGCTCTGATCTCATTCACATGTA 60.105 40.000 0.00 0.00 30.30 2.29
147 148 5.990386 GTGCTCTGATCTCATTCACATGTAT 59.010 40.000 0.00 0.00 0.00 2.29
148 149 5.989777 TGCTCTGATCTCATTCACATGTATG 59.010 40.000 0.00 0.00 0.00 2.39
149 150 5.990386 GCTCTGATCTCATTCACATGTATGT 59.010 40.000 0.00 0.00 42.84 2.29
150 151 6.145858 GCTCTGATCTCATTCACATGTATGTC 59.854 42.308 0.00 0.00 39.39 3.06
151 152 6.519382 TCTGATCTCATTCACATGTATGTCC 58.481 40.000 0.00 0.00 39.39 4.02
152 153 6.098695 TCTGATCTCATTCACATGTATGTCCA 59.901 38.462 0.00 0.00 39.39 4.02
153 154 6.652053 TGATCTCATTCACATGTATGTCCAA 58.348 36.000 0.00 0.00 39.39 3.53
154 155 7.284820 TGATCTCATTCACATGTATGTCCAAT 58.715 34.615 0.00 0.00 39.39 3.16
155 156 7.776500 TGATCTCATTCACATGTATGTCCAATT 59.224 33.333 0.00 0.00 39.39 2.32
156 157 7.558161 TCTCATTCACATGTATGTCCAATTC 57.442 36.000 0.00 0.00 39.39 2.17
157 158 7.111466 TCTCATTCACATGTATGTCCAATTCA 58.889 34.615 0.00 0.00 39.39 2.57
158 159 7.281549 TCTCATTCACATGTATGTCCAATTCAG 59.718 37.037 0.00 0.00 39.39 3.02
159 160 6.885918 TCATTCACATGTATGTCCAATTCAGT 59.114 34.615 0.00 0.00 39.39 3.41
160 161 7.394077 TCATTCACATGTATGTCCAATTCAGTT 59.606 33.333 0.00 0.00 39.39 3.16
161 162 7.523293 TTCACATGTATGTCCAATTCAGTTT 57.477 32.000 0.00 0.00 39.39 2.66
162 163 7.144722 TCACATGTATGTCCAATTCAGTTTC 57.855 36.000 0.00 0.00 39.39 2.78
163 164 6.714356 TCACATGTATGTCCAATTCAGTTTCA 59.286 34.615 0.00 0.00 39.39 2.69
164 165 7.025365 CACATGTATGTCCAATTCAGTTTCAG 58.975 38.462 0.00 0.00 39.39 3.02
165 166 6.942005 ACATGTATGTCCAATTCAGTTTCAGA 59.058 34.615 0.00 0.00 35.87 3.27
166 167 7.613022 ACATGTATGTCCAATTCAGTTTCAGAT 59.387 33.333 0.00 0.00 35.87 2.90
167 168 8.464404 CATGTATGTCCAATTCAGTTTCAGATT 58.536 33.333 0.00 0.00 0.00 2.40
168 169 9.685276 ATGTATGTCCAATTCAGTTTCAGATTA 57.315 29.630 0.00 0.00 0.00 1.75
169 170 9.685276 TGTATGTCCAATTCAGTTTCAGATTAT 57.315 29.630 0.00 0.00 0.00 1.28
172 173 9.911788 ATGTCCAATTCAGTTTCAGATTATACT 57.088 29.630 0.00 0.00 0.00 2.12
199 200 9.890629 ACTAGTATGTTTTGATCACATGTATGT 57.109 29.630 0.00 0.00 42.84 2.29
210 211 2.469826 ACATGTATGTGCCGTATCACG 58.530 47.619 0.00 0.00 40.03 4.35
211 212 1.192312 CATGTATGTGCCGTATCACGC 59.808 52.381 0.00 0.00 40.91 5.34
212 213 0.458260 TGTATGTGCCGTATCACGCT 59.542 50.000 0.00 0.00 40.91 5.07
213 214 0.852777 GTATGTGCCGTATCACGCTG 59.147 55.000 0.00 0.00 40.91 5.18
214 215 0.874175 TATGTGCCGTATCACGCTGC 60.874 55.000 0.00 0.00 40.91 5.25
215 216 3.913573 GTGCCGTATCACGCTGCG 61.914 66.667 21.91 21.91 40.91 5.18
218 219 3.620428 CCGTATCACGCTGCGCTG 61.620 66.667 23.51 18.54 40.91 5.18
219 220 3.620428 CGTATCACGCTGCGCTGG 61.620 66.667 23.51 12.22 33.65 4.85
220 221 2.509336 GTATCACGCTGCGCTGGT 60.509 61.111 23.51 17.33 0.00 4.00
221 222 2.100631 GTATCACGCTGCGCTGGTT 61.101 57.895 23.51 9.55 0.00 3.67
222 223 1.375396 TATCACGCTGCGCTGGTTT 60.375 52.632 23.51 10.31 0.00 3.27
223 224 0.953471 TATCACGCTGCGCTGGTTTT 60.953 50.000 23.51 0.00 0.00 2.43
224 225 2.187599 ATCACGCTGCGCTGGTTTTC 62.188 55.000 23.51 0.00 0.00 2.29
225 226 2.591715 ACGCTGCGCTGGTTTTCT 60.592 55.556 23.51 0.00 0.00 2.52
226 227 2.127118 CGCTGCGCTGGTTTTCTG 60.127 61.111 16.47 0.00 0.00 3.02
227 228 2.429739 GCTGCGCTGGTTTTCTGC 60.430 61.111 16.47 0.00 37.03 4.26
228 229 2.912624 GCTGCGCTGGTTTTCTGCT 61.913 57.895 16.47 0.00 38.06 4.24
229 230 1.577328 GCTGCGCTGGTTTTCTGCTA 61.577 55.000 16.47 0.00 38.06 3.49
230 231 0.445436 CTGCGCTGGTTTTCTGCTAG 59.555 55.000 9.73 0.00 38.06 3.42
231 232 0.034756 TGCGCTGGTTTTCTGCTAGA 59.965 50.000 9.73 0.00 38.06 2.43
232 233 0.723981 GCGCTGGTTTTCTGCTAGAG 59.276 55.000 0.00 0.00 38.06 2.43
233 234 1.363744 CGCTGGTTTTCTGCTAGAGG 58.636 55.000 0.00 0.00 38.06 3.69
234 235 1.090728 GCTGGTTTTCTGCTAGAGGC 58.909 55.000 0.00 0.00 42.22 4.70
243 244 2.280457 GCTAGAGGCATGGACGGC 60.280 66.667 0.00 0.00 41.35 5.68
253 254 3.739922 TGGACGGCCAATGAGGAT 58.260 55.556 8.12 0.00 42.49 3.24
254 255 1.526887 TGGACGGCCAATGAGGATC 59.473 57.895 8.12 0.00 42.49 3.36
255 256 1.271127 TGGACGGCCAATGAGGATCA 61.271 55.000 8.12 0.00 45.66 2.92
273 274 9.152327 TGAGGATCATAGTTCATTCATCTAACT 57.848 33.333 0.00 0.00 42.56 2.24
274 275 9.421806 GAGGATCATAGTTCATTCATCTAACTG 57.578 37.037 0.00 0.00 33.21 3.16
275 276 8.932610 AGGATCATAGTTCATTCATCTAACTGT 58.067 33.333 0.00 0.00 35.23 3.55
276 277 9.553064 GGATCATAGTTCATTCATCTAACTGTT 57.447 33.333 0.00 0.00 35.23 3.16
279 280 9.166173 TCATAGTTCATTCATCTAACTGTTTGG 57.834 33.333 0.00 0.00 35.23 3.28
280 281 8.950210 CATAGTTCATTCATCTAACTGTTTGGT 58.050 33.333 0.00 0.00 35.23 3.67
281 282 7.823745 AGTTCATTCATCTAACTGTTTGGTT 57.176 32.000 0.00 0.00 32.38 3.67
282 283 7.651808 AGTTCATTCATCTAACTGTTTGGTTG 58.348 34.615 0.00 0.00 32.38 3.77
283 284 6.573664 TCATTCATCTAACTGTTTGGTTGG 57.426 37.500 0.00 0.00 0.00 3.77
284 285 5.476599 TCATTCATCTAACTGTTTGGTTGGG 59.523 40.000 0.00 0.00 0.00 4.12
285 286 3.761897 TCATCTAACTGTTTGGTTGGGG 58.238 45.455 0.00 0.00 0.00 4.96
286 287 3.396276 TCATCTAACTGTTTGGTTGGGGA 59.604 43.478 0.00 0.00 0.00 4.81
287 288 4.044065 TCATCTAACTGTTTGGTTGGGGAT 59.956 41.667 0.00 0.00 0.00 3.85
288 289 4.028993 TCTAACTGTTTGGTTGGGGATC 57.971 45.455 0.00 0.00 0.00 3.36
289 290 3.655777 TCTAACTGTTTGGTTGGGGATCT 59.344 43.478 0.00 0.00 0.00 2.75
290 291 2.292828 ACTGTTTGGTTGGGGATCTG 57.707 50.000 0.00 0.00 0.00 2.90
291 292 1.499007 ACTGTTTGGTTGGGGATCTGT 59.501 47.619 0.00 0.00 0.00 3.41
292 293 2.091333 ACTGTTTGGTTGGGGATCTGTT 60.091 45.455 0.00 0.00 0.00 3.16
293 294 2.965147 CTGTTTGGTTGGGGATCTGTTT 59.035 45.455 0.00 0.00 0.00 2.83
294 295 3.379452 TGTTTGGTTGGGGATCTGTTTT 58.621 40.909 0.00 0.00 0.00 2.43
295 296 3.133721 TGTTTGGTTGGGGATCTGTTTTG 59.866 43.478 0.00 0.00 0.00 2.44
296 297 2.765689 TGGTTGGGGATCTGTTTTGT 57.234 45.000 0.00 0.00 0.00 2.83
297 298 2.315176 TGGTTGGGGATCTGTTTTGTG 58.685 47.619 0.00 0.00 0.00 3.33
298 299 1.000843 GGTTGGGGATCTGTTTTGTGC 59.999 52.381 0.00 0.00 0.00 4.57
299 300 1.963515 GTTGGGGATCTGTTTTGTGCT 59.036 47.619 0.00 0.00 0.00 4.40
300 301 3.153919 GTTGGGGATCTGTTTTGTGCTA 58.846 45.455 0.00 0.00 0.00 3.49
301 302 3.071874 TGGGGATCTGTTTTGTGCTAG 57.928 47.619 0.00 0.00 0.00 3.42
302 303 2.642311 TGGGGATCTGTTTTGTGCTAGA 59.358 45.455 0.00 0.00 0.00 2.43
303 304 3.073798 TGGGGATCTGTTTTGTGCTAGAA 59.926 43.478 0.00 0.00 0.00 2.10
304 305 3.691609 GGGGATCTGTTTTGTGCTAGAAG 59.308 47.826 0.00 0.00 0.00 2.85
305 306 3.127721 GGGATCTGTTTTGTGCTAGAAGC 59.872 47.826 0.00 0.00 42.82 3.86
368 369 1.061905 TGGGTGGGATATCTGCTGGG 61.062 60.000 2.05 0.00 0.00 4.45
370 371 1.366319 GGTGGGATATCTGCTGGGAT 58.634 55.000 2.05 0.00 0.00 3.85
374 375 1.558756 GGGATATCTGCTGGGATCTGG 59.441 57.143 2.05 0.00 0.00 3.86
393 394 3.149196 TGGAATCTTCTGGTTGAACAGC 58.851 45.455 0.00 0.00 38.36 4.40
396 397 2.154854 TCTTCTGGTTGAACAGCGAG 57.845 50.000 0.00 0.00 38.36 5.03
400 401 0.532862 CTGGTTGAACAGCGAGTGGT 60.533 55.000 0.00 0.00 0.00 4.16
419 420 3.070748 GGTTTTGGGCGCAAAATAATGT 58.929 40.909 34.94 0.00 36.58 2.71
420 421 4.246458 GGTTTTGGGCGCAAAATAATGTA 58.754 39.130 34.94 15.76 36.58 2.29
431 432 5.650543 GCAAAATAATGTAGAGTGGTTGGG 58.349 41.667 0.00 0.00 0.00 4.12
436 437 2.631160 TGTAGAGTGGTTGGGTGTTG 57.369 50.000 0.00 0.00 0.00 3.33
449 450 1.400142 GGGTGTTGCCTTTTTGTTTGC 59.600 47.619 0.00 0.00 37.43 3.68
452 453 2.079925 TGTTGCCTTTTTGTTTGCCAC 58.920 42.857 0.00 0.00 0.00 5.01
469 470 2.552373 GCCACACAAAAGCCTAGTAGGT 60.552 50.000 17.69 1.97 37.80 3.08
470 471 3.751518 CCACACAAAAGCCTAGTAGGTT 58.248 45.455 17.69 9.04 37.80 3.50
477 480 8.599792 ACACAAAAGCCTAGTAGGTTAATAAGA 58.400 33.333 17.69 0.00 37.80 2.10
505 508 4.286808 AGCTGAAAACCTTTTGCCCATAAT 59.713 37.500 0.00 0.00 0.00 1.28
506 509 5.003160 GCTGAAAACCTTTTGCCCATAATT 58.997 37.500 0.00 0.00 0.00 1.40
507 510 5.473162 GCTGAAAACCTTTTGCCCATAATTT 59.527 36.000 0.00 0.00 0.00 1.82
508 511 6.348458 GCTGAAAACCTTTTGCCCATAATTTC 60.348 38.462 0.00 0.00 0.00 2.17
509 512 6.836242 TGAAAACCTTTTGCCCATAATTTCT 58.164 32.000 0.00 0.00 0.00 2.52
510 513 6.934083 TGAAAACCTTTTGCCCATAATTTCTC 59.066 34.615 0.00 0.00 0.00 2.87
513 516 7.790782 AACCTTTTGCCCATAATTTCTCTAA 57.209 32.000 0.00 0.00 0.00 2.10
516 519 9.487442 ACCTTTTGCCCATAATTTCTCTAATAA 57.513 29.630 0.00 0.00 0.00 1.40
518 521 9.971922 CTTTTGCCCATAATTTCTCTAATAAGG 57.028 33.333 0.00 0.00 0.00 2.69
519 522 9.487442 TTTTGCCCATAATTTCTCTAATAAGGT 57.513 29.630 0.00 0.00 0.00 3.50
520 523 9.487442 TTTGCCCATAATTTCTCTAATAAGGTT 57.513 29.630 0.00 0.00 0.00 3.50
522 525 9.793259 TGCCCATAATTTCTCTAATAAGGTTAG 57.207 33.333 0.00 0.00 0.00 2.34
523 526 9.232473 GCCCATAATTTCTCTAATAAGGTTAGG 57.768 37.037 0.00 0.00 0.00 2.69
538 541 2.485657 GGTTAGGTGGAGAGCTATTGCC 60.486 54.545 0.00 0.00 40.80 4.52
542 545 0.253044 GTGGAGAGCTATTGCCCACA 59.747 55.000 16.80 1.49 43.68 4.17
569 572 4.389687 GCACCAATTTCCACAAAGCATAAG 59.610 41.667 0.00 0.00 0.00 1.73
571 574 4.837860 ACCAATTTCCACAAAGCATAAGGA 59.162 37.500 0.00 0.00 0.00 3.36
572 575 5.306678 ACCAATTTCCACAAAGCATAAGGAA 59.693 36.000 0.00 0.00 33.34 3.36
575 578 7.064966 CCAATTTCCACAAAGCATAAGGAAATC 59.935 37.037 15.60 0.00 33.34 2.17
614 617 3.682696 TCTAGCTAGTCACGGTCAGAAA 58.317 45.455 20.10 0.00 0.00 2.52
617 620 2.490115 AGCTAGTCACGGTCAGAAAGAG 59.510 50.000 0.00 0.00 0.00 2.85
622 625 2.801111 GTCACGGTCAGAAAGAGGAAAC 59.199 50.000 0.00 0.00 0.00 2.78
626 629 4.275936 CACGGTCAGAAAGAGGAAACAAAT 59.724 41.667 0.00 0.00 0.00 2.32
671 674 9.256477 CAATTCGTTTCTAGTTATATGCAGGTA 57.744 33.333 0.00 0.00 0.00 3.08
682 685 8.263854 AGTTATATGCAGGTAACCTTCTGTAT 57.736 34.615 16.20 0.00 39.15 2.29
722 725 1.272490 TGCTTGTAGGGAAGACAGACG 59.728 52.381 0.00 0.00 0.00 4.18
794 797 6.776744 TCTCTCATGGAATAGCATAAGCAAT 58.223 36.000 0.00 0.00 45.49 3.56
795 798 6.653740 TCTCTCATGGAATAGCATAAGCAATG 59.346 38.462 0.00 0.00 45.49 2.82
796 799 6.536447 TCTCATGGAATAGCATAAGCAATGA 58.464 36.000 3.43 0.00 45.49 2.57
797 800 6.429078 TCTCATGGAATAGCATAAGCAATGAC 59.571 38.462 3.43 0.00 45.49 3.06
800 803 6.772360 TGGAATAGCATAAGCAATGACAAA 57.228 33.333 3.43 0.00 45.49 2.83
814 817 5.049954 GCAATGACAAATGTTTGCAACTCAT 60.050 36.000 14.80 4.47 39.96 2.90
819 822 6.696583 TGACAAATGTTTGCAACTCATGTAAG 59.303 34.615 14.43 8.97 41.79 2.34
823 826 3.573538 TGTTTGCAACTCATGTAAGGCAT 59.426 39.130 0.00 0.00 34.97 4.40
909 912 3.005578 TGCAGCTCTCAGATAGCACTATG 59.994 47.826 10.27 1.26 42.62 2.23
991 994 5.336690 GCTCATCCTTTATTTTTGCTGACCA 60.337 40.000 0.00 0.00 0.00 4.02
1011 1014 3.005554 CAACAGAATCATGAGCGGAACT 58.994 45.455 0.09 0.00 0.00 3.01
1141 1144 5.711506 TGATGTTCACTTGCCATTCATAAGT 59.288 36.000 0.00 0.00 35.18 2.24
1148 1151 6.371548 TCACTTGCCATTCATAAGTTACAGTC 59.628 38.462 0.00 0.00 32.69 3.51
1230 1293 3.325425 TGAACATTCGGTCCTAGGACAAA 59.675 43.478 36.73 29.67 46.20 2.83
1235 1298 5.878669 ACATTCGGTCCTAGGACAAATTTAC 59.121 40.000 36.73 19.96 46.20 2.01
1237 1300 3.511146 TCGGTCCTAGGACAAATTTACGT 59.489 43.478 36.73 0.00 46.20 3.57
1278 1569 3.009033 TCTCCAACTGTAACCTGATTGGG 59.991 47.826 0.00 0.00 40.25 4.12
1279 1570 2.714250 TCCAACTGTAACCTGATTGGGT 59.286 45.455 0.00 0.00 40.25 4.51
1280 1571 2.819608 CCAACTGTAACCTGATTGGGTG 59.180 50.000 0.00 0.00 39.85 4.61
1320 1611 8.352201 TGTTATTTCCATGTCTTGTTCTTCTTG 58.648 33.333 0.00 0.00 0.00 3.02
1326 1617 7.223584 TCCATGTCTTGTTCTTCTTGTCATTA 58.776 34.615 0.00 0.00 0.00 1.90
1423 1714 4.027674 TGCCTTGGAAACTGCAGTATTA 57.972 40.909 22.01 4.28 0.00 0.98
1426 1717 4.095036 GCCTTGGAAACTGCAGTATTACTC 59.905 45.833 22.01 11.43 0.00 2.59
1476 1776 3.875510 AAAGCAGTGCTCTGGGCCC 62.876 63.158 20.03 17.59 38.25 5.80
1478 1778 4.357279 GCAGTGCTCTGGGCCCTT 62.357 66.667 25.70 0.00 41.57 3.95
1545 1909 7.678947 AAAGTTTGATGGTCTACTGATTCAG 57.321 36.000 12.17 12.17 37.52 3.02
1547 1911 7.482169 AGTTTGATGGTCTACTGATTCAGTA 57.518 36.000 22.03 22.03 43.46 2.74
1587 1951 5.014202 GGCCAGGAGAATACTTTGGTTTTA 58.986 41.667 0.00 0.00 35.24 1.52
1622 1987 2.642171 TGACTGTCCCCTACATTCCT 57.358 50.000 5.17 0.00 37.05 3.36
1712 2077 4.932200 CACTTGACAAATACTCCCTCTGTC 59.068 45.833 0.00 0.00 37.50 3.51
1713 2078 4.020128 ACTTGACAAATACTCCCTCTGTCC 60.020 45.833 0.00 0.00 36.42 4.02
1715 2080 2.838202 GACAAATACTCCCTCTGTCCCA 59.162 50.000 0.00 0.00 32.10 4.37
1716 2081 3.456277 GACAAATACTCCCTCTGTCCCAT 59.544 47.826 0.00 0.00 32.10 4.00
1729 2094 7.739444 TCCCTCTGTCCCATAATATAAGATGTT 59.261 37.037 0.00 0.00 0.00 2.71
1730 2095 9.046846 CCCTCTGTCCCATAATATAAGATGTTA 57.953 37.037 0.00 0.00 0.00 2.41
1760 2125 7.886629 ACCAATGAACTCATATATTGCTTGT 57.113 32.000 0.00 0.00 35.10 3.16
1761 2126 8.978874 ACCAATGAACTCATATATTGCTTGTA 57.021 30.769 0.00 0.00 35.10 2.41
1762 2127 9.407380 ACCAATGAACTCATATATTGCTTGTAA 57.593 29.630 0.00 0.00 35.10 2.41
1789 2154 7.516450 ACTTCTTATATTATGGGATGGAGGG 57.484 40.000 0.00 0.00 0.00 4.30
1791 2156 7.404396 ACTTCTTATATTATGGGATGGAGGGAG 59.596 40.741 0.00 0.00 0.00 4.30
1792 2157 6.826727 TCTTATATTATGGGATGGAGGGAGT 58.173 40.000 0.00 0.00 0.00 3.85
1793 2158 7.961940 TCTTATATTATGGGATGGAGGGAGTA 58.038 38.462 0.00 0.00 0.00 2.59
1794 2159 8.068110 TCTTATATTATGGGATGGAGGGAGTAG 58.932 40.741 0.00 0.00 0.00 2.57
1795 2160 4.510303 ATTATGGGATGGAGGGAGTAGT 57.490 45.455 0.00 0.00 0.00 2.73
1796 2161 5.633473 ATTATGGGATGGAGGGAGTAGTA 57.367 43.478 0.00 0.00 0.00 1.82
1797 2162 3.551635 ATGGGATGGAGGGAGTAGTAG 57.448 52.381 0.00 0.00 0.00 2.57
1798 2163 1.133136 TGGGATGGAGGGAGTAGTAGC 60.133 57.143 0.00 0.00 0.00 3.58
1799 2164 1.634960 GGATGGAGGGAGTAGTAGCC 58.365 60.000 0.00 0.00 0.00 3.93
1800 2165 1.634960 GATGGAGGGAGTAGTAGCCC 58.365 60.000 0.00 0.00 45.04 5.19
1839 2204 7.044181 TCAGTCTATCTCTTGTAAATTGCAGG 58.956 38.462 0.00 0.00 0.00 4.85
1842 2207 4.708726 ATCTCTTGTAAATTGCAGGCAC 57.291 40.909 0.00 0.00 0.00 5.01
1857 2222 1.217942 AGGCACTTTCTGTTTTCCCCT 59.782 47.619 0.00 0.00 27.25 4.79
1860 2225 3.639561 GGCACTTTCTGTTTTCCCCTTAA 59.360 43.478 0.00 0.00 0.00 1.85
1926 2291 4.474651 TCCCCTACATTCAATCATGTCAGT 59.525 41.667 0.00 0.00 38.40 3.41
1959 2324 2.803492 GCTCGGATTCCATACTGGTGTC 60.803 54.545 3.09 0.00 39.03 3.67
1970 2335 1.120530 ACTGGTGTCGTCCTTCAAGT 58.879 50.000 0.00 0.00 0.00 3.16
1973 2338 1.208535 TGGTGTCGTCCTTCAAGTTGT 59.791 47.619 2.11 0.00 0.00 3.32
1979 2344 3.059800 GTCGTCCTTCAAGTTGTAACTGC 60.060 47.826 2.11 0.00 39.66 4.40
2042 2407 6.913132 CAGCATATCTCTTGAAAATTGCAGAG 59.087 38.462 0.00 0.00 0.00 3.35
2048 2413 8.749026 ATCTCTTGAAAATTGCAGAGACATAT 57.251 30.769 5.62 0.00 35.60 1.78
2052 2417 9.414295 TCTTGAAAATTGCAGAGACATATTTTG 57.586 29.630 7.53 0.00 30.85 2.44
2093 2462 3.181454 ACTTTATATCTTGACAGGGGGCG 60.181 47.826 0.00 0.00 0.00 6.13
2229 2598 7.591421 TGATCATCATTCATGCTACCAATTT 57.409 32.000 0.00 0.00 31.70 1.82
2231 2600 9.304335 TGATCATCATTCATGCTACCAATTTAT 57.696 29.630 0.00 0.00 31.70 1.40
2254 2623 7.943079 ATGTGGTTGATCATCTTTATGTTCA 57.057 32.000 0.00 0.00 39.14 3.18
2255 2624 7.144722 TGTGGTTGATCATCTTTATGTTCAC 57.855 36.000 0.00 0.00 40.09 3.18
2259 2628 7.119699 TGGTTGATCATCTTTATGTTCACTGAC 59.880 37.037 0.00 0.00 40.09 3.51
2261 2630 6.398095 TGATCATCTTTATGTTCACTGACGT 58.602 36.000 0.00 0.00 37.06 4.34
2271 2640 5.666969 TGTTCACTGACGTTAATTTGGAG 57.333 39.130 0.00 0.00 0.00 3.86
2281 2650 4.399934 ACGTTAATTTGGAGTGTGTTGGTT 59.600 37.500 0.00 0.00 0.00 3.67
2299 2668 6.824196 TGTTGGTTACACAGTAAATCAGTGAA 59.176 34.615 0.00 0.00 37.08 3.18
2358 2735 8.451748 GGTGTCCTCTGTTAAATGTAAGAAATC 58.548 37.037 0.00 0.00 0.00 2.17
2387 2764 4.488126 TGCATGAAAAGTAACAGCAGAC 57.512 40.909 0.00 0.00 0.00 3.51
2388 2765 3.058983 TGCATGAAAAGTAACAGCAGACG 60.059 43.478 0.00 0.00 0.00 4.18
2395 2772 6.314400 TGAAAAGTAACAGCAGACGTAAAACT 59.686 34.615 0.00 0.00 0.00 2.66
2406 2783 6.314400 AGCAGACGTAAAACTAGAAAAACACA 59.686 34.615 0.00 0.00 0.00 3.72
2432 2910 6.500751 TCCCTTTTGGAGTACTATCAGTTTCT 59.499 38.462 0.00 0.00 44.07 2.52
2478 2956 7.811236 CACTATGACTTCATTTGCTGACATTTT 59.189 33.333 0.00 0.00 37.76 1.82
2592 3071 3.959495 ACAATGCTGTCAAGGGGATAT 57.041 42.857 0.00 0.00 0.00 1.63
2727 3206 0.179045 GAGTCAGTGCTGGTGTTGGT 60.179 55.000 0.00 0.00 0.00 3.67
2787 3266 3.222354 GACCAAGACCGTCGCCACT 62.222 63.158 0.00 0.00 0.00 4.00
2805 3284 3.423154 GCCACCGGAAGAACAGCG 61.423 66.667 9.46 0.00 0.00 5.18
2868 3347 1.043816 CGGGAGCTATGATGGTGTCT 58.956 55.000 0.00 0.00 0.00 3.41
2934 3413 1.398390 CACGGCAGGCAGAATTAAGTC 59.602 52.381 0.00 0.00 0.00 3.01
3020 3499 4.165372 ACCAGGGTTGAACTTAAAGAGTCA 59.835 41.667 0.00 0.00 37.72 3.41
3171 3650 1.545582 TGATCGTGCAGTCATGTCTCA 59.454 47.619 0.00 0.00 0.00 3.27
3202 3681 8.689251 TTCTGATACTCTTGTTTATTCGAGTG 57.311 34.615 0.00 0.00 37.32 3.51
3350 3841 9.726438 GGCTGAGTACTAAATTTATATGGATGT 57.274 33.333 0.00 0.00 0.00 3.06
3415 3910 6.958192 TCTACAACAGAACTTATTAGGGAGGT 59.042 38.462 0.00 0.00 0.00 3.85
3430 4385 7.679732 TTAGGGAGGTAGAAATTATTCGGAA 57.320 36.000 0.00 0.00 40.63 4.30
3443 4398 6.827586 ATTATTCGGAACCTAAGCAAAACA 57.172 33.333 0.00 0.00 0.00 2.83
3488 4443 4.686091 TCTTCTGTAAATGCTCTTCACACG 59.314 41.667 0.00 0.00 0.00 4.49
3648 4606 4.334118 TCGTCGGGGTCGTCCTCA 62.334 66.667 0.00 0.00 37.69 3.86
3651 4609 1.783031 CGTCGGGGTCGTCCTCATAG 61.783 65.000 0.00 0.00 37.69 2.23
3708 4666 4.353437 GGCACGAACCGGACGTCT 62.353 66.667 22.97 0.00 42.07 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.821616 AATCCTGATTCCTAACAGACAGAT 57.178 37.500 0.00 0.00 36.38 2.90
1 2 6.627087 AAATCCTGATTCCTAACAGACAGA 57.373 37.500 0.00 0.00 36.38 3.41
2 3 6.404074 GCAAAATCCTGATTCCTAACAGACAG 60.404 42.308 0.00 0.00 36.38 3.51
3 4 5.415701 GCAAAATCCTGATTCCTAACAGACA 59.584 40.000 0.00 0.00 36.38 3.41
4 5 5.649831 AGCAAAATCCTGATTCCTAACAGAC 59.350 40.000 0.00 0.00 36.38 3.51
5 6 5.819991 AGCAAAATCCTGATTCCTAACAGA 58.180 37.500 0.00 0.00 36.38 3.41
8 9 4.876107 TCGAGCAAAATCCTGATTCCTAAC 59.124 41.667 0.00 0.00 0.00 2.34
9 10 5.097742 TCGAGCAAAATCCTGATTCCTAA 57.902 39.130 0.00 0.00 0.00 2.69
10 11 4.753516 TCGAGCAAAATCCTGATTCCTA 57.246 40.909 0.00 0.00 0.00 2.94
11 12 3.634397 TCGAGCAAAATCCTGATTCCT 57.366 42.857 0.00 0.00 0.00 3.36
12 13 4.907879 AATCGAGCAAAATCCTGATTCC 57.092 40.909 0.00 0.00 0.00 3.01
13 14 5.039333 CCAAATCGAGCAAAATCCTGATTC 58.961 41.667 0.00 0.00 0.00 2.52
14 15 4.678840 GCCAAATCGAGCAAAATCCTGATT 60.679 41.667 0.00 0.00 0.00 2.57
15 16 3.181483 GCCAAATCGAGCAAAATCCTGAT 60.181 43.478 0.00 0.00 0.00 2.90
16 17 2.164219 GCCAAATCGAGCAAAATCCTGA 59.836 45.455 0.00 0.00 0.00 3.86
17 18 2.533266 GCCAAATCGAGCAAAATCCTG 58.467 47.619 0.00 0.00 0.00 3.86
18 19 1.478105 GGCCAAATCGAGCAAAATCCT 59.522 47.619 0.00 0.00 0.00 3.24
19 20 1.798813 CGGCCAAATCGAGCAAAATCC 60.799 52.381 2.24 0.00 0.00 3.01
20 21 1.548986 CGGCCAAATCGAGCAAAATC 58.451 50.000 2.24 0.00 0.00 2.17
21 22 0.173255 CCGGCCAAATCGAGCAAAAT 59.827 50.000 2.24 0.00 0.00 1.82
22 23 1.583986 CCGGCCAAATCGAGCAAAA 59.416 52.632 2.24 0.00 0.00 2.44
23 24 2.988688 GCCGGCCAAATCGAGCAAA 61.989 57.895 18.11 0.00 0.00 3.68
24 25 2.529454 TAGCCGGCCAAATCGAGCAA 62.529 55.000 26.15 0.00 0.00 3.91
25 26 2.529454 TTAGCCGGCCAAATCGAGCA 62.529 55.000 26.15 0.00 0.00 4.26
26 27 1.817941 TTAGCCGGCCAAATCGAGC 60.818 57.895 26.15 0.00 0.00 5.03
27 28 1.762222 CGTTAGCCGGCCAAATCGAG 61.762 60.000 26.15 7.53 0.00 4.04
28 29 1.812093 CGTTAGCCGGCCAAATCGA 60.812 57.895 26.15 0.00 0.00 3.59
29 30 2.104253 ACGTTAGCCGGCCAAATCG 61.104 57.895 26.15 22.85 42.24 3.34
30 31 1.303091 ACACGTTAGCCGGCCAAATC 61.303 55.000 26.15 11.46 42.24 2.17
31 32 1.302993 ACACGTTAGCCGGCCAAAT 60.303 52.632 26.15 7.06 42.24 2.32
32 33 2.111460 ACACGTTAGCCGGCCAAA 59.889 55.556 26.15 15.96 42.24 3.28
33 34 2.666862 CACACGTTAGCCGGCCAA 60.667 61.111 26.15 14.66 42.24 4.52
36 37 1.738830 TAAGCACACGTTAGCCGGC 60.739 57.895 21.89 21.89 42.24 6.13
37 38 0.668096 TGTAAGCACACGTTAGCCGG 60.668 55.000 0.00 0.00 42.24 6.13
38 39 1.355971 ATGTAAGCACACGTTAGCCG 58.644 50.000 5.43 0.00 37.54 5.52
39 40 3.930848 ACTAATGTAAGCACACGTTAGCC 59.069 43.478 20.91 0.00 45.69 3.93
40 41 5.119588 TCAACTAATGTAAGCACACGTTAGC 59.880 40.000 20.91 0.83 45.69 3.09
41 42 6.699895 TCAACTAATGTAAGCACACGTTAG 57.300 37.500 20.01 20.01 46.54 2.34
42 43 7.661127 AATCAACTAATGTAAGCACACGTTA 57.339 32.000 0.00 0.00 37.54 3.18
43 44 6.554334 AATCAACTAATGTAAGCACACGTT 57.446 33.333 0.00 0.00 37.54 3.99
44 45 7.843490 ATAATCAACTAATGTAAGCACACGT 57.157 32.000 0.00 0.00 37.54 4.49
45 46 9.849607 CTAATAATCAACTAATGTAAGCACACG 57.150 33.333 0.00 0.00 37.54 4.49
54 55 9.314321 CCGAAGACACTAATAATCAACTAATGT 57.686 33.333 0.00 0.00 0.00 2.71
55 56 9.314321 ACCGAAGACACTAATAATCAACTAATG 57.686 33.333 0.00 0.00 0.00 1.90
56 57 9.886132 AACCGAAGACACTAATAATCAACTAAT 57.114 29.630 0.00 0.00 0.00 1.73
57 58 9.715121 AAACCGAAGACACTAATAATCAACTAA 57.285 29.630 0.00 0.00 0.00 2.24
59 60 9.886132 ATAAACCGAAGACACTAATAATCAACT 57.114 29.630 0.00 0.00 0.00 3.16
63 64 9.434559 GCAAATAAACCGAAGACACTAATAATC 57.565 33.333 0.00 0.00 0.00 1.75
64 65 8.403236 GGCAAATAAACCGAAGACACTAATAAT 58.597 33.333 0.00 0.00 0.00 1.28
65 66 7.608761 AGGCAAATAAACCGAAGACACTAATAA 59.391 33.333 0.00 0.00 0.00 1.40
66 67 7.107542 AGGCAAATAAACCGAAGACACTAATA 58.892 34.615 0.00 0.00 0.00 0.98
67 68 5.944007 AGGCAAATAAACCGAAGACACTAAT 59.056 36.000 0.00 0.00 0.00 1.73
68 69 5.310451 AGGCAAATAAACCGAAGACACTAA 58.690 37.500 0.00 0.00 0.00 2.24
69 70 4.901868 AGGCAAATAAACCGAAGACACTA 58.098 39.130 0.00 0.00 0.00 2.74
70 71 3.751518 AGGCAAATAAACCGAAGACACT 58.248 40.909 0.00 0.00 0.00 3.55
71 72 4.473199 GAAGGCAAATAAACCGAAGACAC 58.527 43.478 0.00 0.00 0.00 3.67
72 73 3.187637 CGAAGGCAAATAAACCGAAGACA 59.812 43.478 0.00 0.00 0.00 3.41
73 74 3.187842 ACGAAGGCAAATAAACCGAAGAC 59.812 43.478 0.00 0.00 0.00 3.01
74 75 3.187637 CACGAAGGCAAATAAACCGAAGA 59.812 43.478 0.00 0.00 0.00 2.87
75 76 3.187637 TCACGAAGGCAAATAAACCGAAG 59.812 43.478 0.00 0.00 0.00 3.79
76 77 3.139850 TCACGAAGGCAAATAAACCGAA 58.860 40.909 0.00 0.00 0.00 4.30
77 78 2.768698 TCACGAAGGCAAATAAACCGA 58.231 42.857 0.00 0.00 0.00 4.69
78 79 3.119990 ACATCACGAAGGCAAATAAACCG 60.120 43.478 0.00 0.00 0.00 4.44
79 80 4.165779 CACATCACGAAGGCAAATAAACC 58.834 43.478 0.00 0.00 0.00 3.27
80 81 4.616802 CACACATCACGAAGGCAAATAAAC 59.383 41.667 0.00 0.00 0.00 2.01
81 82 4.517075 TCACACATCACGAAGGCAAATAAA 59.483 37.500 0.00 0.00 0.00 1.40
82 83 4.068599 TCACACATCACGAAGGCAAATAA 58.931 39.130 0.00 0.00 0.00 1.40
83 84 3.669536 TCACACATCACGAAGGCAAATA 58.330 40.909 0.00 0.00 0.00 1.40
84 85 2.503331 TCACACATCACGAAGGCAAAT 58.497 42.857 0.00 0.00 0.00 2.32
85 86 1.960417 TCACACATCACGAAGGCAAA 58.040 45.000 0.00 0.00 0.00 3.68
86 87 2.183478 ATCACACATCACGAAGGCAA 57.817 45.000 0.00 0.00 0.00 4.52
87 88 2.076100 GAATCACACATCACGAAGGCA 58.924 47.619 0.00 0.00 0.00 4.75
88 89 2.076100 TGAATCACACATCACGAAGGC 58.924 47.619 0.00 0.00 0.00 4.35
100 101 7.371159 CACAGACTAGTTAAGAGTGAATCACA 58.629 38.462 16.38 0.00 36.74 3.58
101 102 6.309251 GCACAGACTAGTTAAGAGTGAATCAC 59.691 42.308 5.02 5.02 31.98 3.06
102 103 6.209589 AGCACAGACTAGTTAAGAGTGAATCA 59.790 38.462 14.27 0.00 31.98 2.57
103 104 6.626302 AGCACAGACTAGTTAAGAGTGAATC 58.374 40.000 14.27 2.43 31.98 2.52
104 105 6.435904 AGAGCACAGACTAGTTAAGAGTGAAT 59.564 38.462 14.27 5.65 31.98 2.57
105 106 5.770663 AGAGCACAGACTAGTTAAGAGTGAA 59.229 40.000 14.27 0.00 31.98 3.18
106 107 5.182190 CAGAGCACAGACTAGTTAAGAGTGA 59.818 44.000 14.27 0.00 31.98 3.41
107 108 5.182190 TCAGAGCACAGACTAGTTAAGAGTG 59.818 44.000 0.00 3.54 32.81 3.51
108 109 5.317808 TCAGAGCACAGACTAGTTAAGAGT 58.682 41.667 0.00 0.00 0.00 3.24
109 110 5.888691 TCAGAGCACAGACTAGTTAAGAG 57.111 43.478 0.00 0.00 0.00 2.85
110 111 6.184068 AGATCAGAGCACAGACTAGTTAAGA 58.816 40.000 0.00 0.00 0.00 2.10
111 112 6.094742 TGAGATCAGAGCACAGACTAGTTAAG 59.905 42.308 0.00 0.00 0.00 1.85
112 113 5.946377 TGAGATCAGAGCACAGACTAGTTAA 59.054 40.000 0.00 0.00 0.00 2.01
113 114 5.501156 TGAGATCAGAGCACAGACTAGTTA 58.499 41.667 0.00 0.00 0.00 2.24
114 115 4.339748 TGAGATCAGAGCACAGACTAGTT 58.660 43.478 0.00 0.00 0.00 2.24
115 116 3.961849 TGAGATCAGAGCACAGACTAGT 58.038 45.455 0.00 0.00 0.00 2.57
116 117 5.067544 TGAATGAGATCAGAGCACAGACTAG 59.932 44.000 0.00 0.00 0.00 2.57
117 118 4.952335 TGAATGAGATCAGAGCACAGACTA 59.048 41.667 0.00 0.00 0.00 2.59
118 119 3.768215 TGAATGAGATCAGAGCACAGACT 59.232 43.478 0.00 0.00 0.00 3.24
119 120 3.864583 GTGAATGAGATCAGAGCACAGAC 59.135 47.826 0.00 0.00 0.00 3.51
120 121 3.512724 TGTGAATGAGATCAGAGCACAGA 59.487 43.478 9.66 0.00 33.40 3.41
121 122 3.858247 TGTGAATGAGATCAGAGCACAG 58.142 45.455 9.66 0.00 33.40 3.66
122 123 3.967332 TGTGAATGAGATCAGAGCACA 57.033 42.857 9.66 9.66 34.81 4.57
123 124 4.190001 ACATGTGAATGAGATCAGAGCAC 58.810 43.478 0.00 0.00 0.00 4.40
124 125 4.482952 ACATGTGAATGAGATCAGAGCA 57.517 40.909 0.00 0.00 0.00 4.26
125 126 5.990386 ACATACATGTGAATGAGATCAGAGC 59.010 40.000 14.22 0.00 40.03 4.09
126 127 6.645827 GGACATACATGTGAATGAGATCAGAG 59.354 42.308 14.22 0.00 41.95 3.35
127 128 6.098695 TGGACATACATGTGAATGAGATCAGA 59.901 38.462 14.22 0.00 41.95 3.27
128 129 6.285990 TGGACATACATGTGAATGAGATCAG 58.714 40.000 14.22 0.00 41.95 2.90
129 130 6.237887 TGGACATACATGTGAATGAGATCA 57.762 37.500 14.22 5.26 41.95 2.92
130 131 7.741027 ATTGGACATACATGTGAATGAGATC 57.259 36.000 14.22 3.23 41.95 2.75
131 132 7.776500 TGAATTGGACATACATGTGAATGAGAT 59.224 33.333 14.22 0.00 41.95 2.75
132 133 7.111466 TGAATTGGACATACATGTGAATGAGA 58.889 34.615 14.22 0.00 41.95 3.27
133 134 7.066645 ACTGAATTGGACATACATGTGAATGAG 59.933 37.037 14.22 2.92 41.95 2.90
134 135 6.885918 ACTGAATTGGACATACATGTGAATGA 59.114 34.615 14.22 0.00 41.95 2.57
135 136 7.092137 ACTGAATTGGACATACATGTGAATG 57.908 36.000 9.11 7.86 41.95 2.67
136 137 7.707624 AACTGAATTGGACATACATGTGAAT 57.292 32.000 9.11 0.00 41.95 2.57
137 138 7.230309 TGAAACTGAATTGGACATACATGTGAA 59.770 33.333 9.11 0.00 41.95 3.18
138 139 6.714356 TGAAACTGAATTGGACATACATGTGA 59.286 34.615 9.11 0.00 41.95 3.58
139 140 6.912082 TGAAACTGAATTGGACATACATGTG 58.088 36.000 9.11 0.00 41.95 3.21
140 141 6.942005 TCTGAAACTGAATTGGACATACATGT 59.058 34.615 2.69 2.69 45.16 3.21
141 142 7.381766 TCTGAAACTGAATTGGACATACATG 57.618 36.000 0.00 0.00 0.00 3.21
142 143 8.585471 AATCTGAAACTGAATTGGACATACAT 57.415 30.769 0.00 0.00 0.00 2.29
143 144 9.685276 ATAATCTGAAACTGAATTGGACATACA 57.315 29.630 0.00 0.00 0.00 2.29
146 147 9.911788 AGTATAATCTGAAACTGAATTGGACAT 57.088 29.630 0.00 0.00 0.00 3.06
173 174 9.890629 ACATACATGTGATCAAAACATACTAGT 57.109 29.630 9.11 0.00 40.03 2.57
189 190 2.218530 CGTGATACGGCACATACATGTG 59.781 50.000 16.34 16.34 45.78 3.21
190 191 2.469826 CGTGATACGGCACATACATGT 58.530 47.619 2.69 2.69 38.71 3.21
191 192 1.192312 GCGTGATACGGCACATACATG 59.808 52.381 3.41 0.00 42.82 3.21
192 193 1.068588 AGCGTGATACGGCACATACAT 59.931 47.619 3.41 0.00 42.82 2.29
193 194 0.458260 AGCGTGATACGGCACATACA 59.542 50.000 3.41 0.00 42.82 2.29
194 195 0.852777 CAGCGTGATACGGCACATAC 59.147 55.000 3.41 0.00 42.82 2.39
195 196 0.874175 GCAGCGTGATACGGCACATA 60.874 55.000 3.41 0.00 42.82 2.29
196 197 2.173669 GCAGCGTGATACGGCACAT 61.174 57.895 3.41 0.00 42.82 3.21
197 198 2.813474 GCAGCGTGATACGGCACA 60.813 61.111 3.41 0.00 42.82 4.57
198 199 3.913573 CGCAGCGTGATACGGCAC 61.914 66.667 6.65 0.00 42.82 5.01
211 212 0.445436 CTAGCAGAAAACCAGCGCAG 59.555 55.000 11.47 0.00 31.96 5.18
212 213 0.034756 TCTAGCAGAAAACCAGCGCA 59.965 50.000 11.47 0.00 31.96 6.09
213 214 0.723981 CTCTAGCAGAAAACCAGCGC 59.276 55.000 0.00 0.00 31.96 5.92
214 215 1.363744 CCTCTAGCAGAAAACCAGCG 58.636 55.000 0.00 0.00 31.96 5.18
215 216 1.090728 GCCTCTAGCAGAAAACCAGC 58.909 55.000 0.00 0.00 42.97 4.85
226 227 2.280457 GCCGTCCATGCCTCTAGC 60.280 66.667 0.00 0.00 44.14 3.42
227 228 2.423446 GGCCGTCCATGCCTCTAG 59.577 66.667 0.00 0.00 45.70 2.43
233 234 2.484062 CCTCATTGGCCGTCCATGC 61.484 63.158 0.00 0.00 43.05 4.06
234 235 0.179009 ATCCTCATTGGCCGTCCATG 60.179 55.000 0.00 0.00 43.05 3.66
235 236 0.109342 GATCCTCATTGGCCGTCCAT 59.891 55.000 0.00 0.00 43.05 3.41
236 237 1.271127 TGATCCTCATTGGCCGTCCA 61.271 55.000 0.00 0.00 41.55 4.02
237 238 0.109342 ATGATCCTCATTGGCCGTCC 59.891 55.000 0.00 0.00 32.13 4.79
238 239 2.037772 ACTATGATCCTCATTGGCCGTC 59.962 50.000 0.00 0.00 38.26 4.79
239 240 2.050144 ACTATGATCCTCATTGGCCGT 58.950 47.619 0.00 0.00 38.26 5.68
240 241 2.847327 ACTATGATCCTCATTGGCCG 57.153 50.000 0.00 0.00 38.26 6.13
241 242 4.090761 TGAACTATGATCCTCATTGGCC 57.909 45.455 0.00 0.00 38.26 5.36
242 243 5.766670 TGAATGAACTATGATCCTCATTGGC 59.233 40.000 1.12 0.00 38.35 4.52
243 244 7.883833 AGATGAATGAACTATGATCCTCATTGG 59.116 37.037 1.12 0.00 38.35 3.16
244 245 8.850007 AGATGAATGAACTATGATCCTCATTG 57.150 34.615 1.12 0.00 38.35 2.82
246 247 9.941325 GTTAGATGAATGAACTATGATCCTCAT 57.059 33.333 0.00 0.00 40.72 2.90
247 248 9.152327 AGTTAGATGAATGAACTATGATCCTCA 57.848 33.333 0.00 0.00 31.69 3.86
248 249 9.421806 CAGTTAGATGAATGAACTATGATCCTC 57.578 37.037 0.00 0.00 32.22 3.71
249 250 8.932610 ACAGTTAGATGAATGAACTATGATCCT 58.067 33.333 0.00 0.00 32.22 3.24
250 251 9.553064 AACAGTTAGATGAATGAACTATGATCC 57.447 33.333 0.00 0.00 32.22 3.36
253 254 9.166173 CCAAACAGTTAGATGAATGAACTATGA 57.834 33.333 0.00 0.00 32.22 2.15
254 255 8.950210 ACCAAACAGTTAGATGAATGAACTATG 58.050 33.333 0.00 0.00 32.22 2.23
255 256 9.520515 AACCAAACAGTTAGATGAATGAACTAT 57.479 29.630 0.00 0.00 32.22 2.12
256 257 8.783093 CAACCAAACAGTTAGATGAATGAACTA 58.217 33.333 0.00 0.00 32.22 2.24
257 258 7.255590 CCAACCAAACAGTTAGATGAATGAACT 60.256 37.037 0.00 0.00 33.71 3.01
258 259 6.863126 CCAACCAAACAGTTAGATGAATGAAC 59.137 38.462 0.00 0.00 0.00 3.18
259 260 6.015519 CCCAACCAAACAGTTAGATGAATGAA 60.016 38.462 0.00 0.00 0.00 2.57
260 261 5.476599 CCCAACCAAACAGTTAGATGAATGA 59.523 40.000 0.00 0.00 0.00 2.57
261 262 5.336690 CCCCAACCAAACAGTTAGATGAATG 60.337 44.000 0.00 0.00 0.00 2.67
262 263 4.772100 CCCCAACCAAACAGTTAGATGAAT 59.228 41.667 0.00 0.00 0.00 2.57
263 264 4.141135 TCCCCAACCAAACAGTTAGATGAA 60.141 41.667 0.00 0.00 0.00 2.57
264 265 3.396276 TCCCCAACCAAACAGTTAGATGA 59.604 43.478 0.00 0.00 0.00 2.92
265 266 3.761897 TCCCCAACCAAACAGTTAGATG 58.238 45.455 0.00 0.00 0.00 2.90
266 267 4.292306 AGATCCCCAACCAAACAGTTAGAT 59.708 41.667 0.00 0.00 0.00 1.98
267 268 3.655777 AGATCCCCAACCAAACAGTTAGA 59.344 43.478 0.00 0.00 0.00 2.10
268 269 3.758554 CAGATCCCCAACCAAACAGTTAG 59.241 47.826 0.00 0.00 0.00 2.34
269 270 3.139397 ACAGATCCCCAACCAAACAGTTA 59.861 43.478 0.00 0.00 0.00 2.24
270 271 2.091333 ACAGATCCCCAACCAAACAGTT 60.091 45.455 0.00 0.00 0.00 3.16
271 272 1.499007 ACAGATCCCCAACCAAACAGT 59.501 47.619 0.00 0.00 0.00 3.55
272 273 2.292828 ACAGATCCCCAACCAAACAG 57.707 50.000 0.00 0.00 0.00 3.16
273 274 2.765689 AACAGATCCCCAACCAAACA 57.234 45.000 0.00 0.00 0.00 2.83
274 275 3.133901 ACAAAACAGATCCCCAACCAAAC 59.866 43.478 0.00 0.00 0.00 2.93
275 276 3.133721 CACAAAACAGATCCCCAACCAAA 59.866 43.478 0.00 0.00 0.00 3.28
276 277 2.697751 CACAAAACAGATCCCCAACCAA 59.302 45.455 0.00 0.00 0.00 3.67
277 278 2.315176 CACAAAACAGATCCCCAACCA 58.685 47.619 0.00 0.00 0.00 3.67
278 279 1.000843 GCACAAAACAGATCCCCAACC 59.999 52.381 0.00 0.00 0.00 3.77
279 280 1.963515 AGCACAAAACAGATCCCCAAC 59.036 47.619 0.00 0.00 0.00 3.77
280 281 2.380064 AGCACAAAACAGATCCCCAA 57.620 45.000 0.00 0.00 0.00 4.12
281 282 2.642311 TCTAGCACAAAACAGATCCCCA 59.358 45.455 0.00 0.00 0.00 4.96
282 283 3.350219 TCTAGCACAAAACAGATCCCC 57.650 47.619 0.00 0.00 0.00 4.81
283 284 3.127721 GCTTCTAGCACAAAACAGATCCC 59.872 47.826 0.00 0.00 41.89 3.85
284 285 4.348198 GCTTCTAGCACAAAACAGATCC 57.652 45.455 0.00 0.00 41.89 3.36
297 298 1.086696 TTGCCGTTCATGCTTCTAGC 58.913 50.000 0.00 0.00 42.82 3.42
298 299 3.374988 TGATTTGCCGTTCATGCTTCTAG 59.625 43.478 0.00 0.00 0.00 2.43
299 300 3.342719 TGATTTGCCGTTCATGCTTCTA 58.657 40.909 0.00 0.00 0.00 2.10
300 301 2.161855 TGATTTGCCGTTCATGCTTCT 58.838 42.857 0.00 0.00 0.00 2.85
301 302 2.634982 TGATTTGCCGTTCATGCTTC 57.365 45.000 0.00 0.00 0.00 3.86
302 303 2.492881 TCATGATTTGCCGTTCATGCTT 59.507 40.909 12.53 0.00 45.67 3.91
303 304 2.093890 TCATGATTTGCCGTTCATGCT 58.906 42.857 12.53 0.00 45.67 3.79
304 305 2.565210 TCATGATTTGCCGTTCATGC 57.435 45.000 12.53 0.00 45.67 4.06
305 306 4.295857 TGATCATGATTTGCCGTTCATG 57.704 40.909 10.14 11.57 46.83 3.07
306 307 5.766670 ACTATGATCATGATTTGCCGTTCAT 59.233 36.000 18.72 9.27 32.87 2.57
307 308 5.125356 ACTATGATCATGATTTGCCGTTCA 58.875 37.500 18.72 1.52 0.00 3.18
308 309 5.679734 ACTATGATCATGATTTGCCGTTC 57.320 39.130 18.72 0.00 0.00 3.95
309 310 5.589855 TGAACTATGATCATGATTTGCCGTT 59.410 36.000 18.72 9.77 0.00 4.44
343 344 3.096092 GCAGATATCCCACCCAAAACAA 58.904 45.455 0.00 0.00 0.00 2.83
368 369 5.248640 TGTTCAACCAGAAGATTCCAGATC 58.751 41.667 0.00 0.00 36.78 2.75
370 371 4.645535 CTGTTCAACCAGAAGATTCCAGA 58.354 43.478 0.00 0.00 36.78 3.86
374 375 3.067106 TCGCTGTTCAACCAGAAGATTC 58.933 45.455 0.00 0.00 36.78 2.52
393 394 2.343163 TTTGCGCCCAAAACCACTCG 62.343 55.000 4.18 0.00 37.97 4.18
396 397 4.522971 TTTTGCGCCCAAAACCAC 57.477 50.000 4.18 0.00 43.84 4.16
419 420 0.109723 GGCAACACCCAACCACTCTA 59.890 55.000 0.00 0.00 0.00 2.43
420 421 1.152756 GGCAACACCCAACCACTCT 60.153 57.895 0.00 0.00 0.00 3.24
431 432 2.079925 TGGCAAACAAAAAGGCAACAC 58.920 42.857 0.00 0.00 41.41 3.32
436 437 1.731720 TGTGTGGCAAACAAAAAGGC 58.268 45.000 8.35 0.00 41.57 4.35
449 450 3.418684 ACCTACTAGGCTTTTGTGTGG 57.581 47.619 1.55 0.45 39.63 4.17
452 453 9.444600 TTCTTATTAACCTACTAGGCTTTTGTG 57.555 33.333 1.55 0.00 39.63 3.33
477 480 4.442893 GGGCAAAAGGTTTTCAGCTACTTT 60.443 41.667 0.00 0.00 33.19 2.66
505 508 7.147707 GCTCTCCACCTAACCTTATTAGAGAAA 60.148 40.741 0.00 0.00 31.68 2.52
506 509 6.324254 GCTCTCCACCTAACCTTATTAGAGAA 59.676 42.308 0.00 0.00 31.68 2.87
507 510 5.834204 GCTCTCCACCTAACCTTATTAGAGA 59.166 44.000 0.00 0.00 31.68 3.10
508 511 5.836358 AGCTCTCCACCTAACCTTATTAGAG 59.164 44.000 0.00 0.00 0.00 2.43
509 512 5.778542 AGCTCTCCACCTAACCTTATTAGA 58.221 41.667 0.00 0.00 0.00 2.10
510 513 7.784470 ATAGCTCTCCACCTAACCTTATTAG 57.216 40.000 0.00 0.00 0.00 1.73
513 516 5.221742 GCAATAGCTCTCCACCTAACCTTAT 60.222 44.000 0.00 0.00 37.91 1.73
516 519 2.436173 GCAATAGCTCTCCACCTAACCT 59.564 50.000 0.00 0.00 37.91 3.50
518 521 2.485657 GGGCAATAGCTCTCCACCTAAC 60.486 54.545 0.00 0.00 38.57 2.34
519 522 1.768870 GGGCAATAGCTCTCCACCTAA 59.231 52.381 0.00 0.00 38.57 2.69
520 523 1.343985 TGGGCAATAGCTCTCCACCTA 60.344 52.381 0.00 0.00 43.51 3.08
522 525 0.464554 GTGGGCAATAGCTCTCCACC 60.465 60.000 10.76 2.23 43.51 4.61
523 526 0.253044 TGTGGGCAATAGCTCTCCAC 59.747 55.000 13.50 13.50 45.35 4.02
524 527 0.543277 CTGTGGGCAATAGCTCTCCA 59.457 55.000 0.00 0.00 43.51 3.86
525 528 0.817229 GCTGTGGGCAATAGCTCTCC 60.817 60.000 2.97 0.00 43.51 3.71
526 529 2.700329 GCTGTGGGCAATAGCTCTC 58.300 57.895 2.97 0.00 43.51 3.20
527 530 4.972875 GCTGTGGGCAATAGCTCT 57.027 55.556 2.97 0.00 43.51 4.09
538 541 0.037975 GGAAATTGGTGCTGCTGTGG 60.038 55.000 0.00 0.00 0.00 4.17
542 545 1.412079 TTGTGGAAATTGGTGCTGCT 58.588 45.000 0.00 0.00 0.00 4.24
549 552 5.404466 TCCTTATGCTTTGTGGAAATTGG 57.596 39.130 0.00 0.00 0.00 3.16
599 602 3.150458 TCCTCTTTCTGACCGTGACTA 57.850 47.619 0.00 0.00 0.00 2.59
622 625 9.935682 ATTGCATCGTACAGTATTTTCTATTTG 57.064 29.630 0.00 0.00 0.00 2.32
626 629 7.837505 CGAATTGCATCGTACAGTATTTTCTA 58.162 34.615 1.50 0.00 38.01 2.10
650 653 7.208080 AGGTTACCTGCATATAACTAGAAACG 58.792 38.462 1.74 0.00 32.82 3.60
658 661 8.904099 AATACAGAAGGTTACCTGCATATAAC 57.096 34.615 12.63 10.41 29.53 1.89
671 674 7.657023 AGGAACGATACTAATACAGAAGGTT 57.343 36.000 0.00 0.00 0.00 3.50
682 685 8.803235 ACAAGCATGATATAGGAACGATACTAA 58.197 33.333 0.00 0.00 0.00 2.24
699 702 3.055819 GTCTGTCTTCCCTACAAGCATGA 60.056 47.826 0.00 0.00 0.00 3.07
740 743 7.829211 TCTTAGGGAAATTAGGACATTCTGTTG 59.171 37.037 0.00 0.00 0.00 3.33
753 756 7.448420 CATGAGAGATGCTCTTAGGGAAATTA 58.552 38.462 0.00 0.00 41.35 1.40
756 759 4.102210 CCATGAGAGATGCTCTTAGGGAAA 59.898 45.833 12.77 0.00 46.33 3.13
759 762 3.237746 TCCATGAGAGATGCTCTTAGGG 58.762 50.000 12.09 12.09 45.31 3.53
778 781 7.205297 ACATTTGTCATTGCTTATGCTATTCC 58.795 34.615 1.96 0.00 40.48 3.01
797 800 8.690509 ATGCCTTACATGAGTTGCAAACATTTG 61.691 37.037 14.89 10.60 43.74 2.32
800 803 4.221262 ATGCCTTACATGAGTTGCAAACAT 59.779 37.500 0.00 7.65 43.74 2.71
881 884 0.033228 ATCTGAGAGCTGCATACGCC 59.967 55.000 1.02 0.00 37.32 5.68
909 912 3.320626 TCAATGCGCAGATCATAGTAGC 58.679 45.455 18.32 0.00 0.00 3.58
978 981 5.534207 TGATTCTGTTGGTCAGCAAAAAT 57.466 34.783 0.00 0.00 43.32 1.82
991 994 3.005554 CAGTTCCGCTCATGATTCTGTT 58.994 45.455 0.00 0.00 0.00 3.16
1011 1014 0.759812 TGACTTCCACCGTGTACCCA 60.760 55.000 0.00 0.00 0.00 4.51
1124 1127 6.149308 TGACTGTAACTTATGAATGGCAAGTG 59.851 38.462 0.00 0.00 32.96 3.16
1159 1222 4.803253 GCTCAGCAGGTCATGACATCATAT 60.803 45.833 26.47 5.07 34.26 1.78
1242 1533 7.528996 ACAGTTGGAGATTGAAAATGATCAA 57.471 32.000 0.00 0.00 43.03 2.57
1278 1569 8.973378 TGGAAATAACACGAAATTTTGAATCAC 58.027 29.630 12.54 0.00 0.00 3.06
1279 1570 9.703892 ATGGAAATAACACGAAATTTTGAATCA 57.296 25.926 12.54 0.00 0.00 2.57
1280 1571 9.956797 CATGGAAATAACACGAAATTTTGAATC 57.043 29.630 12.54 0.43 0.00 2.52
1423 1714 5.048713 GCTGCCAATAAAACTTACACTGAGT 60.049 40.000 0.00 0.00 0.00 3.41
1426 1717 5.119931 TGCTGCCAATAAAACTTACACTG 57.880 39.130 0.00 0.00 0.00 3.66
1523 1823 6.365970 ACTGAATCAGTAGACCATCAAACT 57.634 37.500 15.09 0.00 43.46 2.66
1587 1951 3.991773 ACAGTCAATATTAACACACGCGT 59.008 39.130 5.58 5.58 0.00 6.01
1644 2009 7.566879 AGGACTTCACCAGTATAGAATCTGATT 59.433 37.037 1.81 1.81 35.01 2.57
1645 2010 7.072562 AGGACTTCACCAGTATAGAATCTGAT 58.927 38.462 0.00 0.00 35.01 2.90
1735 2100 8.297470 ACAAGCAATATATGAGTTCATTGGTT 57.703 30.769 0.00 5.61 45.12 3.67
1736 2101 7.886629 ACAAGCAATATATGAGTTCATTGGT 57.113 32.000 0.00 0.00 39.93 3.67
1765 2130 7.263901 TCCCTCCATCCCATAATATAAGAAGT 58.736 38.462 0.00 0.00 0.00 3.01
1766 2131 7.404396 ACTCCCTCCATCCCATAATATAAGAAG 59.596 40.741 0.00 0.00 0.00 2.85
1768 2133 6.826727 ACTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
1769 2134 7.846823 ACTACTCCCTCCATCCCATAATATAAG 59.153 40.741 0.00 0.00 0.00 1.73
1770 2135 7.729350 ACTACTCCCTCCATCCCATAATATAA 58.271 38.462 0.00 0.00 0.00 0.98
1771 2136 7.312162 ACTACTCCCTCCATCCCATAATATA 57.688 40.000 0.00 0.00 0.00 0.86
1773 2138 5.633473 ACTACTCCCTCCATCCCATAATA 57.367 43.478 0.00 0.00 0.00 0.98
1775 2140 4.756372 GCTACTACTCCCTCCATCCCATAA 60.756 50.000 0.00 0.00 0.00 1.90
1776 2141 3.245658 GCTACTACTCCCTCCATCCCATA 60.246 52.174 0.00 0.00 0.00 2.74
1777 2142 2.493687 GCTACTACTCCCTCCATCCCAT 60.494 54.545 0.00 0.00 0.00 4.00
1778 2143 1.133136 GCTACTACTCCCTCCATCCCA 60.133 57.143 0.00 0.00 0.00 4.37
1779 2144 1.634960 GCTACTACTCCCTCCATCCC 58.365 60.000 0.00 0.00 0.00 3.85
1780 2145 1.634960 GGCTACTACTCCCTCCATCC 58.365 60.000 0.00 0.00 0.00 3.51
1782 2147 0.178958 CGGGCTACTACTCCCTCCAT 60.179 60.000 0.00 0.00 40.41 3.41
1783 2148 1.229359 CGGGCTACTACTCCCTCCA 59.771 63.158 0.00 0.00 40.41 3.86
1784 2149 0.112801 ATCGGGCTACTACTCCCTCC 59.887 60.000 0.00 0.00 40.41 4.30
1785 2150 1.202903 TCATCGGGCTACTACTCCCTC 60.203 57.143 0.00 0.00 40.41 4.30
1786 2151 0.851469 TCATCGGGCTACTACTCCCT 59.149 55.000 0.00 0.00 40.41 4.20
1787 2152 0.960286 GTCATCGGGCTACTACTCCC 59.040 60.000 0.00 0.00 39.17 4.30
1789 2154 2.299521 ACAGTCATCGGGCTACTACTC 58.700 52.381 0.00 0.00 0.00 2.59
1791 2156 3.521947 AAACAGTCATCGGGCTACTAC 57.478 47.619 0.00 0.00 0.00 2.73
1792 2157 4.546829 AAAAACAGTCATCGGGCTACTA 57.453 40.909 0.00 0.00 0.00 1.82
1793 2158 3.418684 AAAAACAGTCATCGGGCTACT 57.581 42.857 0.00 0.00 0.00 2.57
1822 2187 3.754965 AGTGCCTGCAATTTACAAGAGA 58.245 40.909 0.00 0.00 0.00 3.10
1839 2204 4.929819 TTAAGGGGAAAACAGAAAGTGC 57.070 40.909 0.00 0.00 0.00 4.40
1842 2207 6.648879 TGTCATTAAGGGGAAAACAGAAAG 57.351 37.500 0.00 0.00 0.00 2.62
1880 2245 7.386025 GGGATTAGGGTACGAATATTTGTGTAC 59.614 40.741 17.22 15.22 37.14 2.90
1882 2247 6.293698 GGGATTAGGGTACGAATATTTGTGT 58.706 40.000 17.22 6.42 0.00 3.72
1894 2259 5.899631 TTGAATGTAGGGGATTAGGGTAC 57.100 43.478 0.00 0.00 0.00 3.34
1896 2261 4.981647 TGATTGAATGTAGGGGATTAGGGT 59.018 41.667 0.00 0.00 0.00 4.34
1902 2267 5.133322 ACTGACATGATTGAATGTAGGGGAT 59.867 40.000 0.00 0.00 40.87 3.85
1926 2291 5.492895 TGGAATCCGAGCAAAACTATGTAA 58.507 37.500 0.00 0.00 0.00 2.41
1959 2324 3.131396 AGCAGTTACAACTTGAAGGACG 58.869 45.455 0.00 0.00 37.08 4.79
2093 2462 1.097547 CCGGCTGATCCACAATGGTC 61.098 60.000 0.00 0.00 39.03 4.02
2229 2598 8.892723 GTGAACATAAAGATGATCAACCACATA 58.107 33.333 0.00 0.00 43.92 2.29
2231 2600 6.942005 AGTGAACATAAAGATGATCAACCACA 59.058 34.615 0.00 0.00 43.92 4.17
2254 2623 4.448210 ACACACTCCAAATTAACGTCAGT 58.552 39.130 0.00 0.00 0.00 3.41
2255 2624 5.204833 CAACACACTCCAAATTAACGTCAG 58.795 41.667 0.00 0.00 0.00 3.51
2259 2628 4.561735 ACCAACACACTCCAAATTAACG 57.438 40.909 0.00 0.00 0.00 3.18
2332 2701 7.739498 TTTCTTACATTTAACAGAGGACACC 57.261 36.000 0.00 0.00 0.00 4.16
2333 2702 8.999431 TGATTTCTTACATTTAACAGAGGACAC 58.001 33.333 0.00 0.00 0.00 3.67
2358 2735 6.258230 TGTTACTTTTCATGCAAGGAGATG 57.742 37.500 0.00 0.00 0.00 2.90
2367 2744 3.058914 ACGTCTGCTGTTACTTTTCATGC 60.059 43.478 0.00 0.00 0.00 4.06
2387 2764 7.198306 AGGGATGTGTTTTTCTAGTTTTACG 57.802 36.000 0.00 0.00 0.00 3.18
2388 2765 9.811995 AAAAGGGATGTGTTTTTCTAGTTTTAC 57.188 29.630 0.00 0.00 0.00 2.01
2443 2921 7.802251 GCAAATGAAGTCATAGTGATATTCAGC 59.198 37.037 12.75 9.04 37.91 4.26
2454 2932 8.752766 AAAAATGTCAGCAAATGAAGTCATAG 57.247 30.769 0.00 0.00 40.43 2.23
2478 2956 6.201226 TGTTCAAGTTGCAGTACAATGAAA 57.799 33.333 9.84 0.00 38.40 2.69
2481 2959 4.275689 TCCTGTTCAAGTTGCAGTACAATG 59.724 41.667 0.00 0.00 41.27 2.82
2482 2960 4.275936 GTCCTGTTCAAGTTGCAGTACAAT 59.724 41.667 0.00 0.00 41.27 2.71
2484 2962 3.118408 AGTCCTGTTCAAGTTGCAGTACA 60.118 43.478 0.00 0.00 0.00 2.90
2485 2963 3.467803 AGTCCTGTTCAAGTTGCAGTAC 58.532 45.455 0.00 0.00 0.00 2.73
2489 2968 2.171659 TGGTAGTCCTGTTCAAGTTGCA 59.828 45.455 0.00 0.00 34.23 4.08
2592 3071 3.118775 ACAATGCGTCCTTGCTCAGTATA 60.119 43.478 0.00 0.00 35.36 1.47
2727 3206 1.550072 TCGTCCACTGATCTGATTGCA 59.450 47.619 6.60 0.00 0.00 4.08
2787 3266 2.281484 GCTGTTCTTCCGGTGGCA 60.281 61.111 0.00 0.00 0.00 4.92
2805 3284 3.374058 CGATGGTGTTCATAACCTTGACC 59.626 47.826 0.00 0.00 38.60 4.02
2934 3413 2.067766 TCGAACGGGGTGTTTATTTCG 58.932 47.619 0.00 0.00 42.09 3.46
3065 3544 6.737254 TTTTTCTAGCTACCACAATACTGC 57.263 37.500 0.00 0.00 0.00 4.40
3130 3609 2.880890 ACCTTGACTGAATTCTGCACAC 59.119 45.455 11.86 3.22 0.00 3.82
3202 3681 5.455525 GCGTCAACACTAAAATGGATAATGC 59.544 40.000 0.00 0.00 0.00 3.56
3350 3841 8.684386 TTTTGTTGGTGAAGAGTGAATACATA 57.316 30.769 0.00 0.00 0.00 2.29
3351 3842 7.581213 TTTTGTTGGTGAAGAGTGAATACAT 57.419 32.000 0.00 0.00 0.00 2.29
3415 3910 8.795842 TTTGCTTAGGTTCCGAATAATTTCTA 57.204 30.769 0.00 0.00 0.00 2.10
3426 4381 4.475944 CAAGATGTTTTGCTTAGGTTCCG 58.524 43.478 0.00 0.00 0.00 4.30
3443 4398 7.726033 AGAATTCTACTATATCCGGCAAGAT 57.274 36.000 6.06 0.00 0.00 2.40
3488 4443 7.486802 TGTTTAGTTGCTTCTACTTTGTACC 57.513 36.000 0.00 0.00 0.00 3.34
3540 4497 3.955771 TGCTCTGTGTTTTTCGTTACC 57.044 42.857 0.00 0.00 0.00 2.85
3547 4504 2.288030 GCTGCTGATGCTCTGTGTTTTT 60.288 45.455 0.00 0.00 40.48 1.94
3552 4509 1.983196 GCTGCTGCTGATGCTCTGTG 61.983 60.000 10.92 0.00 40.48 3.66
3637 4595 0.745468 GTCCACTATGAGGACGACCC 59.255 60.000 0.00 0.00 45.35 4.46
3648 4606 3.739519 GCTGCAAGATCTTCGTCCACTAT 60.740 47.826 4.57 0.00 34.07 2.12
3651 4609 0.723981 GCTGCAAGATCTTCGTCCAC 59.276 55.000 4.57 0.00 34.07 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.