Multiple sequence alignment - TraesCS2B01G549300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G549300 chr2B 100.000 3383 0 0 1 3383 745677748 745681130 0.000000e+00 6248.0
1 TraesCS2B01G549300 chr2B 95.000 240 7 1 2937 3171 745680565 745680804 4.120000e-99 372.0
2 TraesCS2B01G549300 chr2B 95.000 240 7 1 2818 3057 745680684 745680918 4.120000e-99 372.0
3 TraesCS2B01G549300 chr2B 90.083 121 7 1 3056 3171 745680565 745680685 5.850000e-33 152.0
4 TraesCS2B01G549300 chr2B 90.083 121 7 1 2818 2938 745680803 745680918 5.850000e-33 152.0
5 TraesCS2B01G549300 chr2B 87.654 81 8 2 2 81 69982562 69982641 3.590000e-15 93.5
6 TraesCS2B01G549300 chr2A 94.925 1202 61 0 975 2176 743072287 743073488 0.000000e+00 1882.0
7 TraesCS2B01G549300 chr2A 98.462 975 14 1 1 975 743071247 743072220 0.000000e+00 1716.0
8 TraesCS2B01G549300 chr2A 93.060 879 38 8 2066 2938 743073318 743074179 0.000000e+00 1264.0
9 TraesCS2B01G549300 chr2A 90.598 351 10 4 3056 3383 743074054 743074404 8.610000e-121 444.0
10 TraesCS2B01G549300 chr2A 92.857 126 4 2 2937 3057 743074054 743074179 9.650000e-41 178.0
11 TraesCS2B01G549300 chr3D 93.617 94 4 1 273 364 291759505 291759412 4.550000e-29 139.0
12 TraesCS2B01G549300 chr3B 93.617 94 4 1 273 364 384887506 384887413 4.550000e-29 139.0
13 TraesCS2B01G549300 chr3A 89.362 94 7 2 273 364 384312965 384312873 7.670000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G549300 chr2B 745677748 745681130 3382 False 1459.2 6248 94.0332 1 3383 5 chr2B.!!$F2 3382
1 TraesCS2B01G549300 chr2A 743071247 743074404 3157 False 1096.8 1882 93.9804 1 3383 5 chr2A.!!$F1 3382


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 269 1.323412 GGTGTTGTTGCATGGGTGTA 58.677 50.0 0.0 0.0 0.00 2.90 F
1498 1566 0.036732 TCCTTTAGGTGCTGCTGTGG 59.963 55.0 0.0 0.0 36.34 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1644 1712 0.035458 CACTCCCGCAAACCTTCTCT 59.965 55.0 0.0 0.0 0.0 3.10 R
2765 2833 0.178981 ACCAGGACATGCTTGCTGTT 60.179 50.0 0.0 0.0 0.0 3.16 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
204 205 5.288015 TGGTGAAAATTAGTTGTGCATGTG 58.712 37.500 0.00 0.00 0.00 3.21
268 269 1.323412 GGTGTTGTTGCATGGGTGTA 58.677 50.000 0.00 0.00 0.00 2.90
275 276 2.440247 GCATGGGTGTAGGGGTGC 60.440 66.667 0.00 0.00 0.00 5.01
560 561 6.986817 ACTAGCCTGCATAATGTTACAGTTAG 59.013 38.462 0.00 0.00 0.00 2.34
639 640 2.690326 CCGTCCTGGGATTTAAGCG 58.310 57.895 0.00 0.00 0.00 4.68
677 678 8.178313 TGAACTCAACTCTGTAGAATGAGTAA 57.822 34.615 20.94 14.07 44.76 2.24
681 682 7.040617 ACTCAACTCTGTAGAATGAGTAACGAA 60.041 37.037 19.98 0.00 44.25 3.85
941 942 3.096092 GAGTCAGGAGTGGAGTGATTCT 58.904 50.000 0.00 0.00 0.00 2.40
946 947 1.470632 GGAGTGGAGTGATTCTGAGCG 60.471 57.143 0.00 0.00 0.00 5.03
964 965 2.356278 GCCACTGAATCTGGGCCA 59.644 61.111 5.85 5.85 40.55 5.36
997 1065 2.830370 CCCCCATTTCAGCCTCGC 60.830 66.667 0.00 0.00 0.00 5.03
1004 1072 2.094597 CCATTTCAGCCTCGCAAATGAA 60.095 45.455 9.68 0.00 39.06 2.57
1009 1077 3.872696 TCAGCCTCGCAAATGAAGATTA 58.127 40.909 0.00 0.00 0.00 1.75
1059 1127 5.188434 TCCCTACTTTCATCTGATGCAAAG 58.812 41.667 24.69 24.69 35.48 2.77
1060 1128 4.946157 CCCTACTTTCATCTGATGCAAAGT 59.054 41.667 29.30 29.30 40.39 2.66
1062 1130 5.413833 CCTACTTTCATCTGATGCAAAGTGT 59.586 40.000 31.36 19.28 39.10 3.55
1088 1156 1.129326 CCGTGTTTGTCTCGTCACTC 58.871 55.000 0.00 0.00 0.00 3.51
1218 1286 9.926158 TCATGTAAATTTTTCTTGCATGTATGT 57.074 25.926 11.61 0.00 43.37 2.29
1248 1316 4.843728 TGTTTAGTTGGCATTCTAGGGAG 58.156 43.478 0.00 0.00 0.00 4.30
1360 1428 2.290071 CCTAAAAGCAAGGACGGAAGGA 60.290 50.000 0.00 0.00 36.08 3.36
1386 1454 7.296098 AGATCAATCCTTATCTTGCCAAGATT 58.704 34.615 23.95 9.45 45.75 2.40
1403 1471 6.127366 GCCAAGATTATCAAGATGAACCCAAA 60.127 38.462 0.00 0.00 0.00 3.28
1472 1540 2.185004 ACTGTGGAAAACCATCGGAG 57.815 50.000 0.00 0.00 0.00 4.63
1498 1566 0.036732 TCCTTTAGGTGCTGCTGTGG 59.963 55.000 0.00 0.00 36.34 4.17
1529 1597 8.243961 TCTAACCTGAGGATCTCTTATTCTTG 57.756 38.462 4.99 0.00 34.92 3.02
1569 1637 3.266772 TCAATATCCTGCCAAAGTCACCT 59.733 43.478 0.00 0.00 0.00 4.00
1581 1649 1.807814 AGTCACCTGGCTATAAGGGG 58.192 55.000 0.00 0.00 39.82 4.79
1636 1704 8.147058 GGATAGCAATAAGAGATCTTGTGAAGA 58.853 37.037 5.34 0.00 42.69 2.87
1644 1712 6.672266 AGAGATCTTGTGAAGAAGTTGGTA 57.328 37.500 0.00 0.00 41.63 3.25
1648 1716 6.495181 AGATCTTGTGAAGAAGTTGGTAGAGA 59.505 38.462 0.00 0.00 41.63 3.10
1713 1781 1.214175 TGGCTTGAGAAGTTGGGTGAA 59.786 47.619 0.00 0.00 0.00 3.18
1732 1800 2.736670 ACCTCAGCCACCAATATTCC 57.263 50.000 0.00 0.00 0.00 3.01
1743 1811 8.489489 CAGCCACCAATATTCCTGATACTATAT 58.511 37.037 0.00 0.00 0.00 0.86
1791 1859 4.396790 GCCCGTTTCTATTACCATGTTTCA 59.603 41.667 0.00 0.00 0.00 2.69
1792 1860 5.106078 GCCCGTTTCTATTACCATGTTTCAA 60.106 40.000 0.00 0.00 0.00 2.69
1809 1877 2.995283 TCAATGGATCAGTTCTGCAGG 58.005 47.619 15.13 0.00 0.00 4.85
1815 1883 2.419851 GGATCAGTTCTGCAGGAAGGAG 60.420 54.545 15.13 0.00 34.23 3.69
1836 1904 1.001181 CCAAGGGGCAAGTTCAACATG 59.999 52.381 0.00 0.00 0.00 3.21
1859 1927 9.691362 CATGATTATGAATGATTCTGATTTGCA 57.309 29.630 6.73 0.00 36.36 4.08
1864 1932 7.582667 ATGAATGATTCTGATTTGCATGAGA 57.417 32.000 6.73 0.00 0.00 3.27
1893 1961 6.331572 TGAGAGAGATAGGTGACCTTAGAGAT 59.668 42.308 10.53 0.00 34.61 2.75
1926 1994 4.265904 TGCCGAACTGAATGAGTTTCTA 57.734 40.909 0.00 0.00 45.48 2.10
1968 2036 0.251033 ATGGAACTCAAGCAGCTGCA 60.251 50.000 38.24 18.87 45.16 4.41
1969 2037 0.887836 TGGAACTCAAGCAGCTGCAG 60.888 55.000 38.24 28.51 45.16 4.41
2053 2121 2.674380 CAGGCCAGCAGGGTCAAC 60.674 66.667 5.01 0.00 46.80 3.18
2083 2151 2.674380 CAGGCCAGCAGGGTCAAC 60.674 66.667 5.01 0.00 46.80 3.18
2142 2210 3.177884 ACAGGCCAGCAGGGTCAA 61.178 61.111 5.01 0.00 46.80 3.18
2146 2214 2.985847 GCCAGCAGGGTCAACCAC 60.986 66.667 0.00 0.00 43.89 4.16
2176 2244 2.985847 GCCAGCAGGGTCAACCAC 60.986 66.667 0.00 0.00 43.89 4.16
2177 2245 2.282462 CCAGCAGGGTCAACCACC 60.282 66.667 0.89 0.00 45.97 4.61
2184 2252 2.985847 GGTCAACCACCAGCAGCC 60.986 66.667 0.00 0.00 45.98 4.85
2185 2253 2.203337 GTCAACCACCAGCAGCCA 60.203 61.111 0.00 0.00 0.00 4.75
2186 2254 2.203337 TCAACCACCAGCAGCCAC 60.203 61.111 0.00 0.00 0.00 5.01
2187 2255 2.519063 CAACCACCAGCAGCCACA 60.519 61.111 0.00 0.00 0.00 4.17
2188 2256 2.203394 AACCACCAGCAGCCACAG 60.203 61.111 0.00 0.00 0.00 3.66
2189 2257 3.797507 AACCACCAGCAGCCACAGG 62.798 63.158 0.00 0.00 0.00 4.00
2200 2268 4.729918 CCACAGGCCAGCAGGGTC 62.730 72.222 5.01 0.00 43.70 4.46
2201 2269 3.957586 CACAGGCCAGCAGGGTCA 61.958 66.667 5.01 0.00 46.80 4.02
2202 2270 3.177884 ACAGGCCAGCAGGGTCAA 61.178 61.111 5.01 0.00 46.80 3.18
2203 2271 2.360852 CAGGCCAGCAGGGTCAAG 60.361 66.667 5.01 0.00 46.80 3.02
2204 2272 4.357279 AGGCCAGCAGGGTCAAGC 62.357 66.667 5.01 0.00 46.80 4.01
2205 2273 4.666253 GGCCAGCAGGGTCAAGCA 62.666 66.667 0.00 0.00 42.53 3.91
2206 2274 3.368571 GCCAGCAGGGTCAAGCAC 61.369 66.667 0.00 0.00 39.65 4.40
2207 2275 2.674380 CCAGCAGGGTCAAGCACC 60.674 66.667 0.00 0.00 45.97 5.01
2214 2282 2.985847 GGTCAAGCACCACCAGCC 60.986 66.667 0.00 0.00 45.98 4.85
2215 2283 2.203337 GTCAAGCACCACCAGCCA 60.203 61.111 0.00 0.00 0.00 4.75
2216 2284 2.203337 TCAAGCACCACCAGCCAC 60.203 61.111 0.00 0.00 0.00 5.01
2217 2285 2.519063 CAAGCACCACCAGCCACA 60.519 61.111 0.00 0.00 0.00 4.17
2218 2286 2.203394 AAGCACCACCAGCCACAG 60.203 61.111 0.00 0.00 0.00 3.66
2219 2287 3.797507 AAGCACCACCAGCCACAGG 62.798 63.158 0.00 0.00 0.00 4.00
2230 2298 4.729918 CCACAGGCCAGCAGGGTC 62.730 72.222 5.01 0.00 43.70 4.46
2231 2299 3.957586 CACAGGCCAGCAGGGTCA 61.958 66.667 5.01 0.00 46.80 4.02
2232 2300 3.177884 ACAGGCCAGCAGGGTCAA 61.178 61.111 5.01 0.00 46.80 3.18
2233 2301 2.360852 CAGGCCAGCAGGGTCAAG 60.361 66.667 5.01 0.00 46.80 3.02
2234 2302 4.357279 AGGCCAGCAGGGTCAAGC 62.357 66.667 5.01 0.00 46.80 4.01
2235 2303 4.666253 GGCCAGCAGGGTCAAGCA 62.666 66.667 0.00 0.00 42.53 3.91
2236 2304 3.368571 GCCAGCAGGGTCAAGCAC 61.369 66.667 0.00 0.00 39.65 4.40
2237 2305 2.674380 CCAGCAGGGTCAAGCACC 60.674 66.667 0.00 0.00 45.97 5.01
2244 2312 4.251246 GGTCAAGCACCACAACCA 57.749 55.556 0.00 0.00 45.98 3.67
2271 2339 0.108585 GAGGTGGCCAGAGTCAAACA 59.891 55.000 5.11 0.00 0.00 2.83
2276 2344 2.030805 GTGGCCAGAGTCAAACATTCAC 60.031 50.000 5.11 0.00 0.00 3.18
2349 2417 0.482446 TCCCACAAGGACAGGCATTT 59.518 50.000 0.00 0.00 40.93 2.32
2365 2433 2.489722 GCATTTCAAACTCAGGACCCTC 59.510 50.000 0.00 0.00 0.00 4.30
2380 2448 0.322277 CCCTCATGCACTGCTTCAGT 60.322 55.000 1.98 0.00 46.51 3.41
2401 2469 1.456287 GCCAGACTCAAAGGTGGGT 59.544 57.895 0.00 0.00 42.96 4.51
2454 2522 1.079612 GCATGGCTGCCAGAAAACC 60.080 57.895 27.20 7.31 42.88 3.27
2497 2565 3.309682 TCAAAGATCGATGTTGAATCGCC 59.690 43.478 8.76 0.00 40.95 5.54
2499 2567 1.067060 AGATCGATGTTGAATCGCCGA 59.933 47.619 0.54 0.00 40.95 5.54
2500 2568 1.453524 GATCGATGTTGAATCGCCGAG 59.546 52.381 0.54 0.00 40.95 4.63
2616 2684 1.604278 GAGTGCTTGTTTGGTGAGACC 59.396 52.381 0.00 0.00 39.22 3.85
2652 2720 6.698766 GGAAATTTGCAATAGACCAGCATAAG 59.301 38.462 0.00 0.00 38.19 1.73
2673 2741 9.726232 CATAAGTATGATGTTCAACAAGAATGG 57.274 33.333 0.00 0.00 35.77 3.16
2680 2748 6.430925 TGATGTTCAACAAGAATGGGACTTAG 59.569 38.462 0.00 0.00 38.76 2.18
2681 2749 5.935945 TGTTCAACAAGAATGGGACTTAGA 58.064 37.500 0.00 0.00 38.76 2.10
2704 2772 5.941555 AGAACCAATCAACTAGTCCTAGG 57.058 43.478 0.82 0.82 37.49 3.02
2706 2774 6.023603 AGAACCAATCAACTAGTCCTAGGAA 58.976 40.000 14.65 0.00 37.49 3.36
2710 2778 5.529060 CCAATCAACTAGTCCTAGGAAATGC 59.471 44.000 14.65 0.20 37.49 3.56
2714 2782 7.055667 TCAACTAGTCCTAGGAAATGCTATG 57.944 40.000 14.65 7.15 37.49 2.23
2761 2829 3.953766 CATCAGTTGCTGCAAGATGATC 58.046 45.455 27.39 12.72 38.62 2.92
2762 2830 2.362736 TCAGTTGCTGCAAGATGATCC 58.637 47.619 16.53 1.88 34.07 3.36
2763 2831 2.026542 TCAGTTGCTGCAAGATGATCCT 60.027 45.455 16.53 4.42 34.07 3.24
2764 2832 2.753452 CAGTTGCTGCAAGATGATCCTT 59.247 45.455 16.53 0.00 34.07 3.36
2765 2833 3.943381 CAGTTGCTGCAAGATGATCCTTA 59.057 43.478 16.53 0.00 34.07 2.69
2766 2834 4.397103 CAGTTGCTGCAAGATGATCCTTAA 59.603 41.667 16.53 0.00 34.07 1.85
2767 2835 4.397417 AGTTGCTGCAAGATGATCCTTAAC 59.603 41.667 16.53 0.00 34.07 2.01
2788 2856 0.321919 GCAAGCATGTCCTGGTGAGA 60.322 55.000 0.00 0.00 35.27 3.27
2789 2857 1.883638 GCAAGCATGTCCTGGTGAGAA 60.884 52.381 0.00 0.00 35.27 2.87
2790 2858 2.082231 CAAGCATGTCCTGGTGAGAAG 58.918 52.381 0.00 0.00 35.27 2.85
2830 2898 4.158764 TGAACAATCCTGGTGAAACGTTTT 59.841 37.500 15.89 0.00 38.12 2.43
2863 2931 2.898472 ATCTGGTCCCTTCCCCGGAG 62.898 65.000 0.73 0.00 39.44 4.63
2880 2948 3.722147 CGGAGGAACTAATCTGGTGATG 58.278 50.000 0.00 0.00 41.55 3.07
2881 2949 3.133003 CGGAGGAACTAATCTGGTGATGT 59.867 47.826 0.00 0.00 41.55 3.06
2882 2950 4.383118 CGGAGGAACTAATCTGGTGATGTT 60.383 45.833 0.00 0.00 41.55 2.71
2883 2951 5.119694 GGAGGAACTAATCTGGTGATGTTC 58.880 45.833 0.00 0.00 41.55 3.18
2884 2952 5.104735 GGAGGAACTAATCTGGTGATGTTCT 60.105 44.000 0.00 0.00 41.55 3.01
2885 2953 5.983540 AGGAACTAATCTGGTGATGTTCTC 58.016 41.667 0.00 0.00 36.58 2.87
2886 2954 5.723887 AGGAACTAATCTGGTGATGTTCTCT 59.276 40.000 0.00 0.00 36.58 3.10
2887 2955 6.897966 AGGAACTAATCTGGTGATGTTCTCTA 59.102 38.462 0.00 0.00 36.58 2.43
2888 2956 7.566879 AGGAACTAATCTGGTGATGTTCTCTAT 59.433 37.037 0.00 0.00 36.58 1.98
2889 2957 7.870445 GGAACTAATCTGGTGATGTTCTCTATC 59.130 40.741 0.00 0.00 36.58 2.08
2890 2958 7.296628 ACTAATCTGGTGATGTTCTCTATCC 57.703 40.000 0.00 0.00 32.44 2.59
2891 2959 6.841229 ACTAATCTGGTGATGTTCTCTATCCA 59.159 38.462 0.00 0.00 32.44 3.41
2892 2960 5.804944 ATCTGGTGATGTTCTCTATCCAG 57.195 43.478 0.00 0.00 38.28 3.86
2893 2961 4.614475 TCTGGTGATGTTCTCTATCCAGT 58.386 43.478 0.00 0.00 38.19 4.00
2894 2962 4.403752 TCTGGTGATGTTCTCTATCCAGTG 59.596 45.833 0.00 0.00 38.19 3.66
2895 2963 4.352893 TGGTGATGTTCTCTATCCAGTGA 58.647 43.478 0.00 0.00 0.00 3.41
2896 2964 4.964897 TGGTGATGTTCTCTATCCAGTGAT 59.035 41.667 0.00 0.00 34.87 3.06
2897 2965 5.163374 TGGTGATGTTCTCTATCCAGTGATG 60.163 44.000 0.00 0.00 32.18 3.07
2898 2966 5.163364 GGTGATGTTCTCTATCCAGTGATGT 60.163 44.000 0.00 0.00 32.18 3.06
2899 2967 6.040955 GGTGATGTTCTCTATCCAGTGATGTA 59.959 42.308 0.00 0.00 32.18 2.29
2900 2968 7.417911 GGTGATGTTCTCTATCCAGTGATGTAA 60.418 40.741 0.00 0.00 32.18 2.41
2901 2969 8.147058 GTGATGTTCTCTATCCAGTGATGTAAT 58.853 37.037 0.00 0.00 32.18 1.89
2902 2970 8.146412 TGATGTTCTCTATCCAGTGATGTAATG 58.854 37.037 0.00 0.00 32.18 1.90
2903 2971 6.820335 TGTTCTCTATCCAGTGATGTAATGG 58.180 40.000 0.00 0.00 45.82 3.16
2904 2972 6.384015 TGTTCTCTATCCAGTGATGTAATGGT 59.616 38.462 0.00 0.00 44.75 3.55
2905 2973 6.410942 TCTCTATCCAGTGATGTAATGGTG 57.589 41.667 0.00 0.00 44.75 4.17
2906 2974 4.960938 TCTATCCAGTGATGTAATGGTGC 58.039 43.478 0.00 0.00 44.75 5.01
2907 2975 3.939740 ATCCAGTGATGTAATGGTGCT 57.060 42.857 0.00 0.00 44.75 4.40
2908 2976 5.838521 TCTATCCAGTGATGTAATGGTGCTA 59.161 40.000 0.00 0.00 44.75 3.49
2909 2977 4.406648 TCCAGTGATGTAATGGTGCTAG 57.593 45.455 0.00 0.00 44.75 3.42
2910 2978 4.030216 TCCAGTGATGTAATGGTGCTAGA 58.970 43.478 0.00 0.00 44.75 2.43
2911 2979 4.469586 TCCAGTGATGTAATGGTGCTAGAA 59.530 41.667 0.00 0.00 44.75 2.10
2912 2980 4.572389 CCAGTGATGTAATGGTGCTAGAAC 59.428 45.833 0.00 0.00 39.66 3.01
2913 2981 5.423015 CAGTGATGTAATGGTGCTAGAACT 58.577 41.667 0.00 0.00 0.00 3.01
2914 2982 6.406961 CCAGTGATGTAATGGTGCTAGAACTA 60.407 42.308 0.00 0.00 39.66 2.24
2915 2983 7.212976 CAGTGATGTAATGGTGCTAGAACTAT 58.787 38.462 0.00 0.00 0.00 2.12
2916 2984 7.383572 CAGTGATGTAATGGTGCTAGAACTATC 59.616 40.741 0.00 0.00 0.00 2.08
2917 2985 7.069950 AGTGATGTAATGGTGCTAGAACTATCA 59.930 37.037 0.00 0.00 0.00 2.15
2918 2986 7.875041 GTGATGTAATGGTGCTAGAACTATCAT 59.125 37.037 0.00 0.90 0.00 2.45
2919 2987 8.432013 TGATGTAATGGTGCTAGAACTATCATT 58.568 33.333 0.00 4.83 0.00 2.57
2920 2988 9.277783 GATGTAATGGTGCTAGAACTATCATTT 57.722 33.333 0.00 0.00 0.00 2.32
2921 2989 8.437360 TGTAATGGTGCTAGAACTATCATTTG 57.563 34.615 0.00 0.00 0.00 2.32
2922 2990 6.382869 AATGGTGCTAGAACTATCATTTGC 57.617 37.500 0.00 0.00 0.00 3.68
2923 2991 4.842574 TGGTGCTAGAACTATCATTTGCA 58.157 39.130 0.00 0.00 0.00 4.08
2924 2992 4.635765 TGGTGCTAGAACTATCATTTGCAC 59.364 41.667 0.00 0.00 45.78 4.57
2925 2993 4.878397 GGTGCTAGAACTATCATTTGCACT 59.122 41.667 13.17 0.00 45.78 4.40
2926 2994 5.355350 GGTGCTAGAACTATCATTTGCACTT 59.645 40.000 13.17 0.00 45.78 3.16
2927 2995 6.127897 GGTGCTAGAACTATCATTTGCACTTT 60.128 38.462 13.17 0.00 45.78 2.66
2928 2996 6.744537 GTGCTAGAACTATCATTTGCACTTTG 59.255 38.462 0.00 0.00 43.95 2.77
2929 2997 6.430925 TGCTAGAACTATCATTTGCACTTTGT 59.569 34.615 0.00 0.00 0.00 2.83
2930 2998 7.040478 TGCTAGAACTATCATTTGCACTTTGTT 60.040 33.333 0.00 0.00 0.00 2.83
2931 2999 7.272084 GCTAGAACTATCATTTGCACTTTGTTG 59.728 37.037 0.00 0.00 0.00 3.33
2932 3000 7.275888 AGAACTATCATTTGCACTTTGTTGA 57.724 32.000 0.00 0.00 0.00 3.18
2933 3001 7.365741 AGAACTATCATTTGCACTTTGTTGAG 58.634 34.615 0.00 0.00 0.00 3.02
2934 3002 5.464168 ACTATCATTTGCACTTTGTTGAGC 58.536 37.500 0.00 0.00 0.00 4.26
2935 3003 3.797451 TCATTTGCACTTTGTTGAGCA 57.203 38.095 0.00 0.00 34.79 4.26
2936 3004 4.325028 TCATTTGCACTTTGTTGAGCAT 57.675 36.364 0.00 0.00 36.80 3.79
2937 3005 4.052608 TCATTTGCACTTTGTTGAGCATG 58.947 39.130 0.00 0.00 36.80 4.06
2938 3006 2.512485 TTGCACTTTGTTGAGCATGG 57.488 45.000 0.00 0.00 36.80 3.66
2939 3007 1.401761 TGCACTTTGTTGAGCATGGT 58.598 45.000 0.00 0.00 31.05 3.55
2940 3008 1.067364 TGCACTTTGTTGAGCATGGTG 59.933 47.619 0.00 0.00 34.99 4.17
2941 3009 1.337703 GCACTTTGTTGAGCATGGTGA 59.662 47.619 0.00 0.00 34.31 4.02
2942 3010 2.223782 GCACTTTGTTGAGCATGGTGAA 60.224 45.455 0.00 0.00 34.31 3.18
2943 3011 3.737663 GCACTTTGTTGAGCATGGTGAAA 60.738 43.478 0.00 0.00 34.31 2.69
2944 3012 3.798337 CACTTTGTTGAGCATGGTGAAAC 59.202 43.478 0.00 7.61 34.31 2.78
2945 3013 3.446873 ACTTTGTTGAGCATGGTGAAACA 59.553 39.130 15.30 15.30 39.98 2.83
2946 3014 4.099881 ACTTTGTTGAGCATGGTGAAACAT 59.900 37.500 18.38 6.32 39.98 2.71
2947 3015 4.669206 TTGTTGAGCATGGTGAAACATT 57.331 36.364 18.38 0.00 39.98 2.71
2948 3016 4.669206 TGTTGAGCATGGTGAAACATTT 57.331 36.364 15.30 0.00 39.98 2.32
2949 3017 5.021033 TGTTGAGCATGGTGAAACATTTT 57.979 34.783 15.30 0.00 39.98 1.82
2950 3018 5.049167 TGTTGAGCATGGTGAAACATTTTC 58.951 37.500 15.30 0.00 39.98 2.29
2951 3019 4.255833 TGAGCATGGTGAAACATTTTCC 57.744 40.909 0.00 0.00 39.98 3.13
2952 3020 3.896888 TGAGCATGGTGAAACATTTTCCT 59.103 39.130 0.00 0.00 39.98 3.36
2953 3021 4.344679 TGAGCATGGTGAAACATTTTCCTT 59.655 37.500 0.00 0.00 39.98 3.36
2954 3022 5.163322 TGAGCATGGTGAAACATTTTCCTTT 60.163 36.000 0.00 0.00 39.98 3.11
2955 3023 5.683681 AGCATGGTGAAACATTTTCCTTTT 58.316 33.333 0.00 0.00 39.98 2.27
2956 3024 5.759763 AGCATGGTGAAACATTTTCCTTTTC 59.240 36.000 0.00 0.00 39.98 2.29
2957 3025 5.049474 GCATGGTGAAACATTTTCCTTTTCC 60.049 40.000 0.00 0.00 39.98 3.13
2958 3026 5.948742 TGGTGAAACATTTTCCTTTTCCT 57.051 34.783 0.00 0.00 39.98 3.36
2959 3027 5.912892 TGGTGAAACATTTTCCTTTTCCTC 58.087 37.500 0.00 0.00 39.98 3.71
2960 3028 5.660864 TGGTGAAACATTTTCCTTTTCCTCT 59.339 36.000 0.00 0.00 39.98 3.69
2961 3029 6.156083 TGGTGAAACATTTTCCTTTTCCTCTT 59.844 34.615 0.00 0.00 39.98 2.85
2962 3030 6.479990 GGTGAAACATTTTCCTTTTCCTCTTG 59.520 38.462 0.00 0.00 39.98 3.02
2963 3031 7.264947 GTGAAACATTTTCCTTTTCCTCTTGA 58.735 34.615 0.00 0.00 36.32 3.02
2964 3032 7.928167 GTGAAACATTTTCCTTTTCCTCTTGAT 59.072 33.333 0.00 0.00 36.32 2.57
2965 3033 8.143835 TGAAACATTTTCCTTTTCCTCTTGATC 58.856 33.333 0.00 0.00 0.00 2.92
2966 3034 7.846101 AACATTTTCCTTTTCCTCTTGATCT 57.154 32.000 0.00 0.00 0.00 2.75
2967 3035 7.224522 ACATTTTCCTTTTCCTCTTGATCTG 57.775 36.000 0.00 0.00 0.00 2.90
2968 3036 6.210185 ACATTTTCCTTTTCCTCTTGATCTGG 59.790 38.462 0.00 0.00 0.00 3.86
2969 3037 5.324832 TTTCCTTTTCCTCTTGATCTGGT 57.675 39.130 0.00 0.00 0.00 4.00
2970 3038 4.559862 TCCTTTTCCTCTTGATCTGGTC 57.440 45.455 0.00 0.00 0.00 4.02
2971 3039 3.264450 TCCTTTTCCTCTTGATCTGGTCC 59.736 47.826 0.00 0.00 0.00 4.46
2972 3040 3.615155 CTTTTCCTCTTGATCTGGTCCC 58.385 50.000 0.00 0.00 0.00 4.46
2973 3041 2.649742 TTCCTCTTGATCTGGTCCCT 57.350 50.000 0.00 0.00 0.00 4.20
2974 3042 2.649742 TCCTCTTGATCTGGTCCCTT 57.350 50.000 0.00 0.00 0.00 3.95
2975 3043 2.472029 TCCTCTTGATCTGGTCCCTTC 58.528 52.381 0.00 0.00 0.00 3.46
2976 3044 1.488393 CCTCTTGATCTGGTCCCTTCC 59.512 57.143 0.00 0.00 0.00 3.46
2977 3045 1.488393 CTCTTGATCTGGTCCCTTCCC 59.512 57.143 0.00 0.00 0.00 3.97
2978 3046 0.548510 CTTGATCTGGTCCCTTCCCC 59.451 60.000 0.00 0.00 0.00 4.81
3057 3125 2.512485 TTGCACTTTGTTGAGCATGG 57.488 45.000 0.00 0.00 36.80 3.66
3058 3126 1.401761 TGCACTTTGTTGAGCATGGT 58.598 45.000 0.00 0.00 31.05 3.55
3059 3127 1.067364 TGCACTTTGTTGAGCATGGTG 59.933 47.619 0.00 0.00 34.99 4.17
3060 3128 1.337703 GCACTTTGTTGAGCATGGTGA 59.662 47.619 0.00 0.00 34.31 4.02
3061 3129 2.223782 GCACTTTGTTGAGCATGGTGAA 60.224 45.455 0.00 0.00 34.31 3.18
3062 3130 3.737663 GCACTTTGTTGAGCATGGTGAAA 60.738 43.478 0.00 0.00 34.31 2.69
3063 3131 3.798337 CACTTTGTTGAGCATGGTGAAAC 59.202 43.478 0.00 7.61 34.31 2.78
3064 3132 3.446873 ACTTTGTTGAGCATGGTGAAACA 59.553 39.130 15.30 15.30 39.98 2.83
3065 3133 4.099881 ACTTTGTTGAGCATGGTGAAACAT 59.900 37.500 18.38 6.32 39.98 2.71
3066 3134 4.669206 TTGTTGAGCATGGTGAAACATT 57.331 36.364 18.38 0.00 39.98 2.71
3067 3135 4.669206 TGTTGAGCATGGTGAAACATTT 57.331 36.364 15.30 0.00 39.98 2.32
3068 3136 5.021033 TGTTGAGCATGGTGAAACATTTT 57.979 34.783 15.30 0.00 39.98 1.82
3069 3137 5.049167 TGTTGAGCATGGTGAAACATTTTC 58.951 37.500 15.30 0.00 39.98 2.29
3070 3138 4.255833 TGAGCATGGTGAAACATTTTCC 57.744 40.909 0.00 0.00 39.98 3.13
3071 3139 3.896888 TGAGCATGGTGAAACATTTTCCT 59.103 39.130 0.00 0.00 39.98 3.36
3072 3140 4.344679 TGAGCATGGTGAAACATTTTCCTT 59.655 37.500 0.00 0.00 39.98 3.36
3073 3141 5.163322 TGAGCATGGTGAAACATTTTCCTTT 60.163 36.000 0.00 0.00 39.98 3.11
3074 3142 5.683681 AGCATGGTGAAACATTTTCCTTTT 58.316 33.333 0.00 0.00 39.98 2.27
3075 3143 5.759763 AGCATGGTGAAACATTTTCCTTTTC 59.240 36.000 0.00 0.00 39.98 2.29
3076 3144 5.049474 GCATGGTGAAACATTTTCCTTTTCC 60.049 40.000 0.00 0.00 39.98 3.13
3077 3145 5.948742 TGGTGAAACATTTTCCTTTTCCT 57.051 34.783 0.00 0.00 39.98 3.36
3078 3146 5.912892 TGGTGAAACATTTTCCTTTTCCTC 58.087 37.500 0.00 0.00 39.98 3.71
3079 3147 5.660864 TGGTGAAACATTTTCCTTTTCCTCT 59.339 36.000 0.00 0.00 39.98 3.69
3080 3148 6.156083 TGGTGAAACATTTTCCTTTTCCTCTT 59.844 34.615 0.00 0.00 39.98 2.85
3081 3149 6.479990 GGTGAAACATTTTCCTTTTCCTCTTG 59.520 38.462 0.00 0.00 39.98 3.02
3082 3150 7.264947 GTGAAACATTTTCCTTTTCCTCTTGA 58.735 34.615 0.00 0.00 36.32 3.02
3083 3151 7.928167 GTGAAACATTTTCCTTTTCCTCTTGAT 59.072 33.333 0.00 0.00 36.32 2.57
3084 3152 8.143835 TGAAACATTTTCCTTTTCCTCTTGATC 58.856 33.333 0.00 0.00 0.00 2.92
3085 3153 7.846101 AACATTTTCCTTTTCCTCTTGATCT 57.154 32.000 0.00 0.00 0.00 2.75
3086 3154 7.224522 ACATTTTCCTTTTCCTCTTGATCTG 57.775 36.000 0.00 0.00 0.00 2.90
3087 3155 6.210185 ACATTTTCCTTTTCCTCTTGATCTGG 59.790 38.462 0.00 0.00 0.00 3.86
3088 3156 5.324832 TTTCCTTTTCCTCTTGATCTGGT 57.675 39.130 0.00 0.00 0.00 4.00
3089 3157 4.559862 TCCTTTTCCTCTTGATCTGGTC 57.440 45.455 0.00 0.00 0.00 4.02
3090 3158 3.264450 TCCTTTTCCTCTTGATCTGGTCC 59.736 47.826 0.00 0.00 0.00 4.46
3091 3159 3.615155 CTTTTCCTCTTGATCTGGTCCC 58.385 50.000 0.00 0.00 0.00 4.46
3092 3160 2.649742 TTCCTCTTGATCTGGTCCCT 57.350 50.000 0.00 0.00 0.00 4.20
3093 3161 2.649742 TCCTCTTGATCTGGTCCCTT 57.350 50.000 0.00 0.00 0.00 3.95
3094 3162 2.472029 TCCTCTTGATCTGGTCCCTTC 58.528 52.381 0.00 0.00 0.00 3.46
3095 3163 1.488393 CCTCTTGATCTGGTCCCTTCC 59.512 57.143 0.00 0.00 0.00 3.46
3096 3164 1.488393 CTCTTGATCTGGTCCCTTCCC 59.512 57.143 0.00 0.00 0.00 3.97
3097 3165 0.548510 CTTGATCTGGTCCCTTCCCC 59.451 60.000 0.00 0.00 0.00 4.81
3098 3166 1.271840 TTGATCTGGTCCCTTCCCCG 61.272 60.000 0.00 0.00 0.00 5.73
3099 3167 2.366972 ATCTGGTCCCTTCCCCGG 60.367 66.667 0.00 0.00 0.00 5.73
3100 3168 2.891307 GATCTGGTCCCTTCCCCGGA 62.891 65.000 0.73 0.00 40.33 5.14
3101 3169 2.898472 ATCTGGTCCCTTCCCCGGAG 62.898 65.000 0.73 0.00 39.44 4.63
3118 3186 4.882671 CGGAGGAACTAATTTGGTCATG 57.117 45.455 7.25 0.00 41.55 3.07
3119 3187 4.261801 CGGAGGAACTAATTTGGTCATGT 58.738 43.478 7.25 0.00 41.55 3.21
3120 3188 4.700213 CGGAGGAACTAATTTGGTCATGTT 59.300 41.667 7.25 0.00 41.55 2.71
3121 3189 5.163754 CGGAGGAACTAATTTGGTCATGTTC 60.164 44.000 7.25 0.00 41.55 3.18
3122 3190 5.946377 GGAGGAACTAATTTGGTCATGTTCT 59.054 40.000 7.25 0.00 41.55 3.01
3123 3191 6.094186 GGAGGAACTAATTTGGTCATGTTCTC 59.906 42.308 7.25 3.97 41.55 2.87
3124 3192 6.784031 AGGAACTAATTTGGTCATGTTCTCT 58.216 36.000 7.25 0.00 36.02 3.10
3125 3193 7.918076 AGGAACTAATTTGGTCATGTTCTCTA 58.082 34.615 7.25 0.00 36.02 2.43
3126 3194 8.552296 AGGAACTAATTTGGTCATGTTCTCTAT 58.448 33.333 7.25 0.00 36.02 1.98
3127 3195 8.831550 GGAACTAATTTGGTCATGTTCTCTATC 58.168 37.037 7.25 0.00 35.52 2.08
3128 3196 8.738645 AACTAATTTGGTCATGTTCTCTATCC 57.261 34.615 0.00 0.00 0.00 2.59
3129 3197 7.861629 ACTAATTTGGTCATGTTCTCTATCCA 58.138 34.615 0.00 0.00 0.00 3.41
3130 3198 7.989741 ACTAATTTGGTCATGTTCTCTATCCAG 59.010 37.037 0.00 0.00 0.00 3.86
3131 3199 5.762179 TTTGGTCATGTTCTCTATCCAGT 57.238 39.130 0.00 0.00 0.00 4.00
3132 3200 4.743057 TGGTCATGTTCTCTATCCAGTG 57.257 45.455 0.00 0.00 0.00 3.66
3133 3201 4.352893 TGGTCATGTTCTCTATCCAGTGA 58.647 43.478 0.00 0.00 0.00 3.41
3134 3202 4.964897 TGGTCATGTTCTCTATCCAGTGAT 59.035 41.667 0.00 0.00 34.87 3.06
3135 3203 5.163374 TGGTCATGTTCTCTATCCAGTGATG 60.163 44.000 0.00 0.00 32.18 3.07
3136 3204 5.163364 GGTCATGTTCTCTATCCAGTGATGT 60.163 44.000 0.00 0.00 32.18 3.06
3137 3205 6.040955 GGTCATGTTCTCTATCCAGTGATGTA 59.959 42.308 0.00 0.00 32.18 2.29
3138 3206 7.417911 GGTCATGTTCTCTATCCAGTGATGTAA 60.418 40.741 0.00 0.00 32.18 2.41
3139 3207 8.147058 GTCATGTTCTCTATCCAGTGATGTAAT 58.853 37.037 0.00 0.00 32.18 1.89
3140 3208 8.146412 TCATGTTCTCTATCCAGTGATGTAATG 58.854 37.037 0.00 0.00 32.18 1.90
3141 3209 6.820335 TGTTCTCTATCCAGTGATGTAATGG 58.180 40.000 0.00 0.00 45.82 3.16
3142 3210 6.384015 TGTTCTCTATCCAGTGATGTAATGGT 59.616 38.462 0.00 0.00 44.75 3.55
3143 3211 6.410942 TCTCTATCCAGTGATGTAATGGTG 57.589 41.667 0.00 0.00 44.75 4.17
3144 3212 4.960938 TCTATCCAGTGATGTAATGGTGC 58.039 43.478 0.00 0.00 44.75 5.01
3145 3213 3.939740 ATCCAGTGATGTAATGGTGCT 57.060 42.857 0.00 0.00 44.75 4.40
3146 3214 5.838521 TCTATCCAGTGATGTAATGGTGCTA 59.161 40.000 0.00 0.00 44.75 3.49
3147 3215 4.406648 TCCAGTGATGTAATGGTGCTAG 57.593 45.455 0.00 0.00 44.75 3.42
3148 3216 4.030216 TCCAGTGATGTAATGGTGCTAGA 58.970 43.478 0.00 0.00 44.75 2.43
3149 3217 4.122776 CCAGTGATGTAATGGTGCTAGAC 58.877 47.826 0.00 0.00 39.66 2.59
3150 3218 4.383010 CCAGTGATGTAATGGTGCTAGACA 60.383 45.833 0.00 0.00 39.66 3.41
3151 3219 5.363101 CAGTGATGTAATGGTGCTAGACAT 58.637 41.667 0.00 0.00 33.52 3.06
3152 3220 5.819379 CAGTGATGTAATGGTGCTAGACATT 59.181 40.000 11.01 11.01 40.21 2.71
3153 3221 6.317140 CAGTGATGTAATGGTGCTAGACATTT 59.683 38.462 11.36 0.00 38.24 2.32
3154 3222 6.317140 AGTGATGTAATGGTGCTAGACATTTG 59.683 38.462 11.36 0.00 38.24 2.32
3155 3223 4.963276 TGTAATGGTGCTAGACATTTGC 57.037 40.909 11.36 7.37 38.24 3.68
3156 3224 4.331108 TGTAATGGTGCTAGACATTTGCA 58.669 39.130 11.36 9.13 38.24 4.08
3162 3230 3.287312 TGCTAGACATTTGCACTTTGC 57.713 42.857 0.00 0.00 45.29 3.68
3163 3231 2.030007 TGCTAGACATTTGCACTTTGCC 60.030 45.455 0.00 0.00 44.23 4.52
3164 3232 2.855180 CTAGACATTTGCACTTTGCCG 58.145 47.619 0.00 0.00 44.23 5.69
3165 3233 1.317613 AGACATTTGCACTTTGCCGA 58.682 45.000 0.00 0.00 44.23 5.54
3166 3234 1.267806 AGACATTTGCACTTTGCCGAG 59.732 47.619 0.00 0.00 44.23 4.63
3167 3235 0.318955 ACATTTGCACTTTGCCGAGC 60.319 50.000 0.00 0.00 44.23 5.03
3168 3236 0.318869 CATTTGCACTTTGCCGAGCA 60.319 50.000 0.00 0.00 44.23 4.26
3169 3237 0.604578 ATTTGCACTTTGCCGAGCAT 59.395 45.000 0.00 0.00 44.23 3.79
3170 3238 0.318869 TTTGCACTTTGCCGAGCATG 60.319 50.000 0.00 0.00 44.23 4.06
3343 3424 2.973694 AAATGATCCCATGCACTTGC 57.026 45.000 0.00 0.00 42.50 4.01
3365 3446 6.457355 TGCTGAGCAATACAAATGTTTTGAT 58.543 32.000 17.27 12.52 38.63 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
204 205 1.181098 ATCACACTGGCAGGGCAAAC 61.181 55.000 18.59 0.00 0.00 2.93
268 269 2.042639 GCAATGGATGGCACCCCT 60.043 61.111 0.00 0.00 0.00 4.79
275 276 4.524316 TGAACTTTGAAGCAATGGATGG 57.476 40.909 0.00 0.00 0.00 3.51
314 315 8.132362 AGCTCGAATATTAGAGTGACTAAGTTG 58.868 37.037 21.92 0.00 43.16 3.16
581 582 5.843673 TTGCCAAGAAAGTTCATTACACA 57.156 34.783 0.00 0.00 0.00 3.72
639 640 6.881602 AGAGTTGAGTTCATTTCTACCCAATC 59.118 38.462 0.00 0.00 0.00 2.67
677 678 2.930826 AGAACCAGTGTGGATTTCGT 57.069 45.000 0.00 0.00 40.96 3.85
681 682 2.597455 CCCAAAGAACCAGTGTGGATT 58.403 47.619 0.00 0.00 40.96 3.01
895 896 2.328099 GCTCCTGGACGCAACAAGG 61.328 63.158 11.62 0.00 0.00 3.61
941 942 1.078918 CAGATTCAGTGGCCGCTCA 60.079 57.895 18.11 0.00 0.00 4.26
964 965 3.656869 GGGGGAGGACCTCACTATT 57.343 57.895 23.17 0.00 40.60 1.73
995 1063 5.499652 GCAAACTGCATAATCTTCATTTGCG 60.500 40.000 0.00 0.00 44.26 4.85
1009 1077 6.687333 TATCCTCCGGAAAGCAAACTGCAT 62.687 45.833 5.23 0.00 39.90 3.96
1033 1101 3.557595 GCATCAGATGAAAGTAGGGAACG 59.442 47.826 15.12 0.00 0.00 3.95
1041 1109 5.068636 AGACACTTTGCATCAGATGAAAGT 58.931 37.500 22.49 22.49 39.20 2.66
1042 1110 5.624344 AGACACTTTGCATCAGATGAAAG 57.376 39.130 15.12 19.43 35.48 2.62
1059 1127 2.870411 AGACAAACACGGCTTAAGACAC 59.130 45.455 9.49 0.00 0.00 3.67
1060 1128 3.128349 GAGACAAACACGGCTTAAGACA 58.872 45.455 9.49 0.00 0.00 3.41
1062 1130 2.223876 ACGAGACAAACACGGCTTAAGA 60.224 45.455 6.67 0.00 36.94 2.10
1111 1179 6.418101 ACATTGCATTACTCACTGGATAAGT 58.582 36.000 0.00 0.00 40.93 2.24
1113 1181 8.046708 ACTTACATTGCATTACTCACTGGATAA 58.953 33.333 0.00 0.00 0.00 1.75
1122 1190 8.915654 CCAAGAAAAACTTACATTGCATTACTC 58.084 33.333 0.00 0.00 37.03 2.59
1248 1316 2.168521 TCCAAGATCCTTCATGTCGACC 59.831 50.000 14.12 0.00 0.00 4.79
1360 1428 6.666678 TCTTGGCAAGATAAGGATTGATCTT 58.333 36.000 25.38 0.00 41.96 2.40
1386 1454 7.552050 AACCATTTTTGGGTTCATCTTGATA 57.448 32.000 0.00 0.00 45.26 2.15
1440 1508 3.637911 TCCACAGTAATAACCGCCAAT 57.362 42.857 0.00 0.00 0.00 3.16
1498 1566 5.570320 AGAGATCCTCAGGTTAGATAGCTC 58.430 45.833 0.00 0.00 32.06 4.09
1528 1596 3.879998 TGAGCAAGACAAACTTACCACA 58.120 40.909 0.00 0.00 37.03 4.17
1529 1597 4.893424 TTGAGCAAGACAAACTTACCAC 57.107 40.909 0.00 0.00 37.03 4.16
1569 1637 2.771943 CAGAGTCAACCCCTTATAGCCA 59.228 50.000 0.00 0.00 0.00 4.75
1575 1643 1.771854 TGTTGCAGAGTCAACCCCTTA 59.228 47.619 4.46 0.00 44.15 2.69
1636 1704 3.139077 CGCAAACCTTCTCTACCAACTT 58.861 45.455 0.00 0.00 0.00 2.66
1644 1712 0.035458 CACTCCCGCAAACCTTCTCT 59.965 55.000 0.00 0.00 0.00 3.10
1648 1716 1.528309 CACCACTCCCGCAAACCTT 60.528 57.895 0.00 0.00 0.00 3.50
1713 1781 2.092212 CAGGAATATTGGTGGCTGAGGT 60.092 50.000 0.00 0.00 0.00 3.85
1732 1800 8.282455 AGGAACACGGTATGATATAGTATCAG 57.718 38.462 5.94 0.00 0.00 2.90
1743 1811 4.201657 TCGATCTTAGGAACACGGTATGA 58.798 43.478 0.00 0.00 0.00 2.15
1791 1859 3.618351 CTTCCTGCAGAACTGATCCATT 58.382 45.455 17.39 0.00 0.00 3.16
1792 1860 2.092538 CCTTCCTGCAGAACTGATCCAT 60.093 50.000 17.39 0.00 0.00 3.41
1836 1904 9.908152 TCATGCAAATCAGAATCATTCATAATC 57.092 29.630 0.00 0.00 0.00 1.75
1859 1927 4.768448 CACCTATCTCTCTCAGCATCTCAT 59.232 45.833 0.00 0.00 0.00 2.90
1864 1932 3.117169 AGGTCACCTATCTCTCTCAGCAT 60.117 47.826 0.00 0.00 28.47 3.79
1872 1940 6.102615 ACAGATCTCTAAGGTCACCTATCTCT 59.897 42.308 0.00 0.00 31.13 3.10
1893 1961 2.875933 CAGTTCGGCAAGGTTTAACAGA 59.124 45.455 0.00 0.00 0.00 3.41
1968 2036 2.489073 CCCGCCCTTTGGATATTTAGCT 60.489 50.000 0.00 0.00 0.00 3.32
1969 2037 1.886542 CCCGCCCTTTGGATATTTAGC 59.113 52.381 0.00 0.00 0.00 3.09
2136 2204 2.985847 GCTGCTGGTGGTTGACCC 60.986 66.667 0.00 0.00 45.45 4.46
2137 2205 2.985847 GGCTGCTGGTGGTTGACC 60.986 66.667 0.00 0.00 46.37 4.02
2142 2210 4.275508 CCTGTGGCTGCTGGTGGT 62.276 66.667 0.00 0.00 0.00 4.16
2183 2251 4.729918 GACCCTGCTGGCCTGTGG 62.730 72.222 11.69 13.03 37.83 4.17
2184 2252 3.496309 TTGACCCTGCTGGCCTGTG 62.496 63.158 11.69 4.81 37.83 3.66
2185 2253 3.177884 TTGACCCTGCTGGCCTGT 61.178 61.111 11.69 0.00 37.83 4.00
2186 2254 2.360852 CTTGACCCTGCTGGCCTG 60.361 66.667 3.32 4.26 37.83 4.85
2187 2255 4.357279 GCTTGACCCTGCTGGCCT 62.357 66.667 3.32 0.00 37.83 5.19
2188 2256 4.666253 TGCTTGACCCTGCTGGCC 62.666 66.667 3.63 0.00 37.83 5.36
2189 2257 3.368571 GTGCTTGACCCTGCTGGC 61.369 66.667 3.63 0.00 37.83 4.85
2190 2258 2.674380 GGTGCTTGACCCTGCTGG 60.674 66.667 1.89 1.89 39.10 4.85
2191 2259 2.113774 TGGTGCTTGACCCTGCTG 59.886 61.111 0.00 0.00 45.45 4.41
2192 2260 2.113986 GTGGTGCTTGACCCTGCT 59.886 61.111 0.00 0.00 45.45 4.24
2193 2261 2.985847 GGTGGTGCTTGACCCTGC 60.986 66.667 0.00 0.00 45.45 4.85
2194 2262 1.601759 CTGGTGGTGCTTGACCCTG 60.602 63.158 0.00 0.00 45.45 4.45
2195 2263 2.839098 CTGGTGGTGCTTGACCCT 59.161 61.111 0.00 0.00 45.45 4.34
2196 2264 2.985847 GCTGGTGGTGCTTGACCC 60.986 66.667 0.00 0.00 45.45 4.46
2197 2265 2.985847 GGCTGGTGGTGCTTGACC 60.986 66.667 0.00 0.00 46.37 4.02
2198 2266 2.203337 TGGCTGGTGGTGCTTGAC 60.203 61.111 0.00 0.00 0.00 3.18
2199 2267 2.203337 GTGGCTGGTGGTGCTTGA 60.203 61.111 0.00 0.00 0.00 3.02
2200 2268 2.519063 TGTGGCTGGTGGTGCTTG 60.519 61.111 0.00 0.00 0.00 4.01
2201 2269 2.203394 CTGTGGCTGGTGGTGCTT 60.203 61.111 0.00 0.00 0.00 3.91
2202 2270 4.275508 CCTGTGGCTGGTGGTGCT 62.276 66.667 0.00 0.00 0.00 4.40
2213 2281 4.729918 GACCCTGCTGGCCTGTGG 62.730 72.222 11.69 13.03 37.83 4.17
2214 2282 3.496309 TTGACCCTGCTGGCCTGTG 62.496 63.158 11.69 4.81 37.83 3.66
2215 2283 3.177884 TTGACCCTGCTGGCCTGT 61.178 61.111 11.69 0.00 37.83 4.00
2216 2284 2.360852 CTTGACCCTGCTGGCCTG 60.361 66.667 3.32 4.26 37.83 4.85
2217 2285 4.357279 GCTTGACCCTGCTGGCCT 62.357 66.667 3.32 0.00 37.83 5.19
2218 2286 4.666253 TGCTTGACCCTGCTGGCC 62.666 66.667 3.63 0.00 37.83 5.36
2219 2287 3.368571 GTGCTTGACCCTGCTGGC 61.369 66.667 3.63 0.00 37.83 4.85
2220 2288 2.674380 GGTGCTTGACCCTGCTGG 60.674 66.667 1.89 1.89 39.10 4.85
2221 2289 2.113774 TGGTGCTTGACCCTGCTG 59.886 61.111 0.00 0.00 45.45 4.41
2222 2290 2.113986 GTGGTGCTTGACCCTGCT 59.886 61.111 0.00 0.00 45.45 4.24
2223 2291 1.827789 TTGTGGTGCTTGACCCTGC 60.828 57.895 0.00 0.00 45.45 4.85
2224 2292 1.455383 GGTTGTGGTGCTTGACCCTG 61.455 60.000 0.00 0.00 45.45 4.45
2225 2293 1.152756 GGTTGTGGTGCTTGACCCT 60.153 57.895 0.00 0.00 45.45 4.34
2226 2294 1.454847 TGGTTGTGGTGCTTGACCC 60.455 57.895 0.00 0.00 45.45 4.46
2227 2295 2.032981 CTGGTTGTGGTGCTTGACC 58.967 57.895 0.00 0.00 46.37 4.02
2228 2296 1.103398 AGCTGGTTGTGGTGCTTGAC 61.103 55.000 0.00 0.00 30.96 3.18
2229 2297 1.102809 CAGCTGGTTGTGGTGCTTGA 61.103 55.000 5.57 0.00 33.03 3.02
2230 2298 1.361271 CAGCTGGTTGTGGTGCTTG 59.639 57.895 5.57 0.00 33.03 4.01
2231 2299 3.846180 CAGCTGGTTGTGGTGCTT 58.154 55.556 5.57 0.00 33.03 3.91
2234 2302 2.610694 CGAGCAGCTGGTTGTGGTG 61.611 63.158 21.18 2.60 36.18 4.17
2235 2303 2.281070 CGAGCAGCTGGTTGTGGT 60.281 61.111 21.18 0.00 0.00 4.16
2236 2304 2.031012 TCGAGCAGCTGGTTGTGG 59.969 61.111 27.96 14.83 0.00 4.17
2237 2305 2.031516 CCTCGAGCAGCTGGTTGTG 61.032 63.158 27.96 25.16 0.00 3.33
2238 2306 2.345244 CCTCGAGCAGCTGGTTGT 59.655 61.111 27.96 0.00 0.00 3.32
2239 2307 2.031516 CACCTCGAGCAGCTGGTTG 61.032 63.158 24.53 24.53 0.00 3.77
2240 2308 2.345244 CACCTCGAGCAGCTGGTT 59.655 61.111 21.18 0.00 0.00 3.67
2241 2309 3.699894 CCACCTCGAGCAGCTGGT 61.700 66.667 20.31 20.31 0.00 4.00
2271 2339 4.702131 GGTGGAGCATTACTTGAAGTGAAT 59.298 41.667 8.33 1.64 0.00 2.57
2276 2344 3.411446 TGTGGTGGAGCATTACTTGAAG 58.589 45.455 0.00 0.00 0.00 3.02
2349 2417 1.003580 GCATGAGGGTCCTGAGTTTGA 59.996 52.381 0.00 0.00 0.00 2.69
2365 2433 0.731417 GCCTACTGAAGCAGTGCATG 59.269 55.000 19.20 6.51 45.01 4.06
2380 2448 0.984230 CCACCTTTGAGTCTGGCCTA 59.016 55.000 3.32 0.00 0.00 3.93
2448 2516 4.009370 AGAGAAGCCTACACAGGTTTTC 57.991 45.455 0.00 0.00 44.68 2.29
2454 2522 5.240891 TGAATGAAAGAGAAGCCTACACAG 58.759 41.667 0.00 0.00 0.00 3.66
2497 2565 7.573916 AATAGACGATCTGAATAATTGCTCG 57.426 36.000 0.00 0.00 0.00 5.03
2499 2567 8.768955 GTGAAATAGACGATCTGAATAATTGCT 58.231 33.333 0.00 0.00 0.00 3.91
2500 2568 7.737744 CGTGAAATAGACGATCTGAATAATTGC 59.262 37.037 0.00 0.00 39.21 3.56
2616 2684 2.299582 TGCAAATTTCCATGTGTCCCTG 59.700 45.455 0.00 0.00 0.00 4.45
2652 2720 6.375455 AGTCCCATTCTTGTTGAACATCATAC 59.625 38.462 0.00 0.00 37.52 2.39
2673 2741 7.387643 ACTAGTTGATTGGTTCTTCTAAGTCC 58.612 38.462 0.00 0.00 0.00 3.85
2680 2748 6.154706 TCCTAGGACTAGTTGATTGGTTCTTC 59.845 42.308 7.62 0.00 0.00 2.87
2681 2749 6.023603 TCCTAGGACTAGTTGATTGGTTCTT 58.976 40.000 7.62 0.00 0.00 2.52
2710 2778 1.134007 TGTCATCAGGGGCTTGCATAG 60.134 52.381 0.00 0.00 0.00 2.23
2714 2782 0.322816 TCTTGTCATCAGGGGCTTGC 60.323 55.000 0.00 0.00 0.00 4.01
2758 2826 3.065925 GGACATGCTTGCTGTTAAGGATC 59.934 47.826 0.00 0.00 36.72 3.36
2759 2827 3.019564 GGACATGCTTGCTGTTAAGGAT 58.980 45.455 0.00 0.00 38.98 3.24
2761 2829 2.163010 CAGGACATGCTTGCTGTTAAGG 59.837 50.000 0.00 0.00 0.00 2.69
2762 2830 2.163010 CCAGGACATGCTTGCTGTTAAG 59.837 50.000 0.00 0.00 0.00 1.85
2763 2831 2.161855 CCAGGACATGCTTGCTGTTAA 58.838 47.619 0.00 0.00 0.00 2.01
2764 2832 1.073763 ACCAGGACATGCTTGCTGTTA 59.926 47.619 0.00 0.00 0.00 2.41
2765 2833 0.178981 ACCAGGACATGCTTGCTGTT 60.179 50.000 0.00 0.00 0.00 3.16
2766 2834 0.892358 CACCAGGACATGCTTGCTGT 60.892 55.000 0.00 0.00 0.00 4.40
2767 2835 0.607217 TCACCAGGACATGCTTGCTG 60.607 55.000 0.00 0.00 0.00 4.41
2837 2905 2.472029 GGAAGGGACCAGATCAAGAGA 58.528 52.381 0.00 0.00 0.00 3.10
2840 2908 0.548510 GGGGAAGGGACCAGATCAAG 59.451 60.000 0.00 0.00 0.00 3.02
2863 2931 5.983540 AGAGAACATCACCAGATTAGTTCC 58.016 41.667 0.00 0.00 37.65 3.62
2864 2932 7.870445 GGATAGAGAACATCACCAGATTAGTTC 59.130 40.741 0.00 0.00 37.40 3.01
2865 2933 7.345653 TGGATAGAGAACATCACCAGATTAGTT 59.654 37.037 0.00 0.00 30.20 2.24
2866 2934 6.841229 TGGATAGAGAACATCACCAGATTAGT 59.159 38.462 0.00 0.00 30.20 2.24
2867 2935 7.015098 ACTGGATAGAGAACATCACCAGATTAG 59.985 40.741 15.59 0.00 42.90 1.73
2868 2936 6.841229 ACTGGATAGAGAACATCACCAGATTA 59.159 38.462 15.59 0.00 42.90 1.75
2869 2937 5.664908 ACTGGATAGAGAACATCACCAGATT 59.335 40.000 15.59 0.00 42.90 2.40
2870 2938 5.070180 CACTGGATAGAGAACATCACCAGAT 59.930 44.000 15.59 0.00 42.90 2.90
2871 2939 4.403752 CACTGGATAGAGAACATCACCAGA 59.596 45.833 15.59 0.00 42.90 3.86
2872 2940 4.403752 TCACTGGATAGAGAACATCACCAG 59.596 45.833 0.00 0.00 44.32 4.00
2873 2941 4.352893 TCACTGGATAGAGAACATCACCA 58.647 43.478 0.00 0.00 0.00 4.17
2874 2942 5.163364 ACATCACTGGATAGAGAACATCACC 60.163 44.000 0.00 0.00 30.87 4.02
2875 2943 5.911752 ACATCACTGGATAGAGAACATCAC 58.088 41.667 0.00 0.00 30.87 3.06
2876 2944 7.660030 TTACATCACTGGATAGAGAACATCA 57.340 36.000 0.00 0.00 30.87 3.07
2877 2945 7.601886 CCATTACATCACTGGATAGAGAACATC 59.398 40.741 0.00 0.00 31.38 3.06
2878 2946 7.071698 ACCATTACATCACTGGATAGAGAACAT 59.928 37.037 0.00 0.00 34.08 2.71
2879 2947 6.384015 ACCATTACATCACTGGATAGAGAACA 59.616 38.462 0.00 0.00 34.08 3.18
2880 2948 6.703607 CACCATTACATCACTGGATAGAGAAC 59.296 42.308 0.00 0.00 34.08 3.01
2881 2949 6.686378 GCACCATTACATCACTGGATAGAGAA 60.686 42.308 0.00 0.00 34.08 2.87
2882 2950 5.221521 GCACCATTACATCACTGGATAGAGA 60.222 44.000 0.00 0.00 34.08 3.10
2883 2951 4.993584 GCACCATTACATCACTGGATAGAG 59.006 45.833 0.00 0.00 34.08 2.43
2884 2952 4.655649 AGCACCATTACATCACTGGATAGA 59.344 41.667 0.00 0.00 34.08 1.98
2885 2953 4.965814 AGCACCATTACATCACTGGATAG 58.034 43.478 0.00 0.00 34.08 2.08
2886 2954 5.838521 TCTAGCACCATTACATCACTGGATA 59.161 40.000 0.00 0.00 34.08 2.59
2887 2955 3.939740 AGCACCATTACATCACTGGAT 57.060 42.857 0.00 0.00 34.08 3.41
2888 2956 4.030216 TCTAGCACCATTACATCACTGGA 58.970 43.478 0.00 0.00 34.08 3.86
2889 2957 4.406648 TCTAGCACCATTACATCACTGG 57.593 45.455 0.00 0.00 36.09 4.00
2890 2958 5.423015 AGTTCTAGCACCATTACATCACTG 58.577 41.667 0.00 0.00 0.00 3.66
2891 2959 5.683876 AGTTCTAGCACCATTACATCACT 57.316 39.130 0.00 0.00 0.00 3.41
2892 2960 7.210174 TGATAGTTCTAGCACCATTACATCAC 58.790 38.462 0.00 0.00 0.00 3.06
2893 2961 7.360113 TGATAGTTCTAGCACCATTACATCA 57.640 36.000 0.00 0.00 0.00 3.07
2894 2962 8.839310 AATGATAGTTCTAGCACCATTACATC 57.161 34.615 0.00 0.00 0.00 3.06
2895 2963 9.060347 CAAATGATAGTTCTAGCACCATTACAT 57.940 33.333 0.00 0.00 0.00 2.29
2896 2964 7.012327 GCAAATGATAGTTCTAGCACCATTACA 59.988 37.037 0.00 0.00 0.00 2.41
2897 2965 7.012327 TGCAAATGATAGTTCTAGCACCATTAC 59.988 37.037 0.00 0.00 0.00 1.89
2898 2966 7.012327 GTGCAAATGATAGTTCTAGCACCATTA 59.988 37.037 0.00 0.00 43.72 1.90
2899 2967 5.887598 TGCAAATGATAGTTCTAGCACCATT 59.112 36.000 0.00 0.00 0.00 3.16
2900 2968 5.297776 GTGCAAATGATAGTTCTAGCACCAT 59.702 40.000 0.00 0.00 43.72 3.55
2901 2969 4.635765 GTGCAAATGATAGTTCTAGCACCA 59.364 41.667 0.00 0.00 43.72 4.17
2902 2970 5.162000 GTGCAAATGATAGTTCTAGCACC 57.838 43.478 0.00 0.00 43.72 5.01
2904 2972 6.430925 ACAAAGTGCAAATGATAGTTCTAGCA 59.569 34.615 0.35 0.35 0.00 3.49
2905 2973 6.846350 ACAAAGTGCAAATGATAGTTCTAGC 58.154 36.000 0.00 0.00 0.00 3.42
2906 2974 8.506437 TCAACAAAGTGCAAATGATAGTTCTAG 58.494 33.333 0.00 0.00 0.00 2.43
2907 2975 8.389779 TCAACAAAGTGCAAATGATAGTTCTA 57.610 30.769 0.00 0.00 0.00 2.10
2908 2976 7.275888 TCAACAAAGTGCAAATGATAGTTCT 57.724 32.000 0.00 0.00 0.00 3.01
2909 2977 6.088616 GCTCAACAAAGTGCAAATGATAGTTC 59.911 38.462 0.00 0.00 0.00 3.01
2910 2978 5.922544 GCTCAACAAAGTGCAAATGATAGTT 59.077 36.000 0.00 0.00 0.00 2.24
2911 2979 5.009911 TGCTCAACAAAGTGCAAATGATAGT 59.990 36.000 0.00 0.00 35.35 2.12
2912 2980 5.463286 TGCTCAACAAAGTGCAAATGATAG 58.537 37.500 0.00 0.00 35.35 2.08
2913 2981 5.450592 TGCTCAACAAAGTGCAAATGATA 57.549 34.783 0.00 0.00 35.35 2.15
2914 2982 4.325028 TGCTCAACAAAGTGCAAATGAT 57.675 36.364 0.00 0.00 35.35 2.45
2915 2983 3.797451 TGCTCAACAAAGTGCAAATGA 57.203 38.095 0.00 0.00 35.35 2.57
2916 2984 3.185594 CCATGCTCAACAAAGTGCAAATG 59.814 43.478 0.00 0.00 40.80 2.32
2917 2985 3.181463 ACCATGCTCAACAAAGTGCAAAT 60.181 39.130 0.00 0.00 40.80 2.32
2918 2986 2.168106 ACCATGCTCAACAAAGTGCAAA 59.832 40.909 0.00 0.00 40.80 3.68
2919 2987 1.755959 ACCATGCTCAACAAAGTGCAA 59.244 42.857 0.00 0.00 40.80 4.08
2920 2988 1.067364 CACCATGCTCAACAAAGTGCA 59.933 47.619 0.00 0.00 41.54 4.57
2921 2989 1.337703 TCACCATGCTCAACAAAGTGC 59.662 47.619 0.00 0.00 36.05 4.40
2922 2990 3.713858 TTCACCATGCTCAACAAAGTG 57.286 42.857 0.00 0.00 36.94 3.16
2923 2991 3.446873 TGTTTCACCATGCTCAACAAAGT 59.553 39.130 0.00 0.00 0.00 2.66
2924 2992 4.044336 TGTTTCACCATGCTCAACAAAG 57.956 40.909 0.00 0.00 0.00 2.77
2925 2993 4.669206 ATGTTTCACCATGCTCAACAAA 57.331 36.364 0.00 0.00 31.39 2.83
2926 2994 4.669206 AATGTTTCACCATGCTCAACAA 57.331 36.364 0.00 0.00 31.39 2.83
2927 2995 4.669206 AAATGTTTCACCATGCTCAACA 57.331 36.364 0.00 0.00 0.00 3.33
2928 2996 4.448732 GGAAAATGTTTCACCATGCTCAAC 59.551 41.667 3.35 0.00 0.00 3.18
2929 2997 4.344679 AGGAAAATGTTTCACCATGCTCAA 59.655 37.500 3.35 0.00 0.00 3.02
2930 2998 3.896888 AGGAAAATGTTTCACCATGCTCA 59.103 39.130 3.35 0.00 0.00 4.26
2931 2999 4.525912 AGGAAAATGTTTCACCATGCTC 57.474 40.909 3.35 0.00 0.00 4.26
2932 3000 4.961438 AAGGAAAATGTTTCACCATGCT 57.039 36.364 3.35 0.00 0.00 3.79
2933 3001 5.049474 GGAAAAGGAAAATGTTTCACCATGC 60.049 40.000 3.35 0.00 33.76 4.06
2934 3002 6.290605 AGGAAAAGGAAAATGTTTCACCATG 58.709 36.000 3.35 0.00 33.76 3.66
2935 3003 6.327365 AGAGGAAAAGGAAAATGTTTCACCAT 59.673 34.615 3.35 0.00 33.76 3.55
2936 3004 5.660864 AGAGGAAAAGGAAAATGTTTCACCA 59.339 36.000 3.35 0.00 33.76 4.17
2937 3005 6.161855 AGAGGAAAAGGAAAATGTTTCACC 57.838 37.500 3.35 0.00 33.76 4.02
2938 3006 7.264947 TCAAGAGGAAAAGGAAAATGTTTCAC 58.735 34.615 3.35 0.00 33.76 3.18
2939 3007 7.416964 TCAAGAGGAAAAGGAAAATGTTTCA 57.583 32.000 3.35 0.00 33.76 2.69
2940 3008 8.363390 AGATCAAGAGGAAAAGGAAAATGTTTC 58.637 33.333 0.00 0.00 0.00 2.78
2941 3009 8.146412 CAGATCAAGAGGAAAAGGAAAATGTTT 58.854 33.333 0.00 0.00 0.00 2.83
2942 3010 7.256083 CCAGATCAAGAGGAAAAGGAAAATGTT 60.256 37.037 0.00 0.00 0.00 2.71
2943 3011 6.210185 CCAGATCAAGAGGAAAAGGAAAATGT 59.790 38.462 0.00 0.00 0.00 2.71
2944 3012 6.210185 ACCAGATCAAGAGGAAAAGGAAAATG 59.790 38.462 0.00 0.00 0.00 2.32
2945 3013 6.318112 ACCAGATCAAGAGGAAAAGGAAAAT 58.682 36.000 0.00 0.00 0.00 1.82
2946 3014 5.705400 ACCAGATCAAGAGGAAAAGGAAAA 58.295 37.500 0.00 0.00 0.00 2.29
2947 3015 5.316987 GACCAGATCAAGAGGAAAAGGAAA 58.683 41.667 0.00 0.00 0.00 3.13
2948 3016 4.263506 GGACCAGATCAAGAGGAAAAGGAA 60.264 45.833 0.00 0.00 0.00 3.36
2949 3017 3.264450 GGACCAGATCAAGAGGAAAAGGA 59.736 47.826 0.00 0.00 0.00 3.36
2950 3018 3.615155 GGACCAGATCAAGAGGAAAAGG 58.385 50.000 0.00 0.00 0.00 3.11
2951 3019 3.265479 AGGGACCAGATCAAGAGGAAAAG 59.735 47.826 0.00 0.00 0.00 2.27
2952 3020 3.260205 AGGGACCAGATCAAGAGGAAAA 58.740 45.455 0.00 0.00 0.00 2.29
2953 3021 2.921221 AGGGACCAGATCAAGAGGAAA 58.079 47.619 0.00 0.00 0.00 3.13
2954 3022 2.649742 AGGGACCAGATCAAGAGGAA 57.350 50.000 0.00 0.00 0.00 3.36
2955 3023 2.472029 GAAGGGACCAGATCAAGAGGA 58.528 52.381 0.00 0.00 0.00 3.71
2956 3024 1.488393 GGAAGGGACCAGATCAAGAGG 59.512 57.143 0.00 0.00 0.00 3.69
2957 3025 1.488393 GGGAAGGGACCAGATCAAGAG 59.512 57.143 0.00 0.00 0.00 2.85
2958 3026 1.584724 GGGAAGGGACCAGATCAAGA 58.415 55.000 0.00 0.00 0.00 3.02
2959 3027 0.548510 GGGGAAGGGACCAGATCAAG 59.451 60.000 0.00 0.00 0.00 3.02
2960 3028 1.271840 CGGGGAAGGGACCAGATCAA 61.272 60.000 0.00 0.00 0.00 2.57
2961 3029 1.689233 CGGGGAAGGGACCAGATCA 60.689 63.158 0.00 0.00 0.00 2.92
2962 3030 2.444256 CCGGGGAAGGGACCAGATC 61.444 68.421 0.00 0.00 0.00 2.75
2963 3031 2.366972 CCGGGGAAGGGACCAGAT 60.367 66.667 0.00 0.00 0.00 2.90
2964 3032 3.607299 TCCGGGGAAGGGACCAGA 61.607 66.667 0.00 0.00 0.00 3.86
2965 3033 3.083997 CTCCGGGGAAGGGACCAG 61.084 72.222 0.00 0.00 0.00 4.00
2966 3034 4.733725 CCTCCGGGGAAGGGACCA 62.734 72.222 0.37 0.00 37.23 4.02
2967 3035 4.410033 TCCTCCGGGGAAGGGACC 62.410 72.222 0.37 0.00 41.91 4.46
2974 3042 1.562475 CCAAATTAGTTCCTCCGGGGA 59.438 52.381 0.37 4.95 43.41 4.81
2975 3043 1.283905 ACCAAATTAGTTCCTCCGGGG 59.716 52.381 0.00 0.00 0.00 5.73
2976 3044 2.026636 TCACCAAATTAGTTCCTCCGGG 60.027 50.000 0.00 0.00 0.00 5.73
2977 3045 3.343941 TCACCAAATTAGTTCCTCCGG 57.656 47.619 0.00 0.00 0.00 5.14
2978 3046 4.261801 ACATCACCAAATTAGTTCCTCCG 58.738 43.478 0.00 0.00 0.00 4.63
2984 3052 8.328758 TGGATAGAGAACATCACCAAATTAGTT 58.671 33.333 0.00 0.00 0.00 2.24
3057 3125 7.264947 TCAAGAGGAAAAGGAAAATGTTTCAC 58.735 34.615 3.35 0.00 33.76 3.18
3058 3126 7.416964 TCAAGAGGAAAAGGAAAATGTTTCA 57.583 32.000 3.35 0.00 33.76 2.69
3059 3127 8.363390 AGATCAAGAGGAAAAGGAAAATGTTTC 58.637 33.333 0.00 0.00 0.00 2.78
3060 3128 8.146412 CAGATCAAGAGGAAAAGGAAAATGTTT 58.854 33.333 0.00 0.00 0.00 2.83
3061 3129 7.256083 CCAGATCAAGAGGAAAAGGAAAATGTT 60.256 37.037 0.00 0.00 0.00 2.71
3062 3130 6.210185 CCAGATCAAGAGGAAAAGGAAAATGT 59.790 38.462 0.00 0.00 0.00 2.71
3063 3131 6.210185 ACCAGATCAAGAGGAAAAGGAAAATG 59.790 38.462 0.00 0.00 0.00 2.32
3064 3132 6.318112 ACCAGATCAAGAGGAAAAGGAAAAT 58.682 36.000 0.00 0.00 0.00 1.82
3065 3133 5.705400 ACCAGATCAAGAGGAAAAGGAAAA 58.295 37.500 0.00 0.00 0.00 2.29
3066 3134 5.316987 GACCAGATCAAGAGGAAAAGGAAA 58.683 41.667 0.00 0.00 0.00 3.13
3067 3135 4.263506 GGACCAGATCAAGAGGAAAAGGAA 60.264 45.833 0.00 0.00 0.00 3.36
3068 3136 3.264450 GGACCAGATCAAGAGGAAAAGGA 59.736 47.826 0.00 0.00 0.00 3.36
3069 3137 3.615155 GGACCAGATCAAGAGGAAAAGG 58.385 50.000 0.00 0.00 0.00 3.11
3070 3138 3.265479 AGGGACCAGATCAAGAGGAAAAG 59.735 47.826 0.00 0.00 0.00 2.27
3071 3139 3.260205 AGGGACCAGATCAAGAGGAAAA 58.740 45.455 0.00 0.00 0.00 2.29
3072 3140 2.921221 AGGGACCAGATCAAGAGGAAA 58.079 47.619 0.00 0.00 0.00 3.13
3073 3141 2.649742 AGGGACCAGATCAAGAGGAA 57.350 50.000 0.00 0.00 0.00 3.36
3074 3142 2.472029 GAAGGGACCAGATCAAGAGGA 58.528 52.381 0.00 0.00 0.00 3.71
3075 3143 1.488393 GGAAGGGACCAGATCAAGAGG 59.512 57.143 0.00 0.00 0.00 3.69
3076 3144 1.488393 GGGAAGGGACCAGATCAAGAG 59.512 57.143 0.00 0.00 0.00 2.85
3077 3145 1.584724 GGGAAGGGACCAGATCAAGA 58.415 55.000 0.00 0.00 0.00 3.02
3078 3146 0.548510 GGGGAAGGGACCAGATCAAG 59.451 60.000 0.00 0.00 0.00 3.02
3079 3147 1.271840 CGGGGAAGGGACCAGATCAA 61.272 60.000 0.00 0.00 0.00 2.57
3080 3148 1.689233 CGGGGAAGGGACCAGATCA 60.689 63.158 0.00 0.00 0.00 2.92
3081 3149 2.444256 CCGGGGAAGGGACCAGATC 61.444 68.421 0.00 0.00 0.00 2.75
3082 3150 2.366972 CCGGGGAAGGGACCAGAT 60.367 66.667 0.00 0.00 0.00 2.90
3083 3151 3.607299 TCCGGGGAAGGGACCAGA 61.607 66.667 0.00 0.00 0.00 3.86
3084 3152 3.083997 CTCCGGGGAAGGGACCAG 61.084 72.222 0.00 0.00 0.00 4.00
3085 3153 4.733725 CCTCCGGGGAAGGGACCA 62.734 72.222 0.37 0.00 37.23 4.02
3086 3154 4.410033 TCCTCCGGGGAAGGGACC 62.410 72.222 0.37 0.00 41.91 4.46
3093 3161 1.562475 CCAAATTAGTTCCTCCGGGGA 59.438 52.381 0.37 4.95 43.41 4.81
3094 3162 1.283905 ACCAAATTAGTTCCTCCGGGG 59.716 52.381 0.00 0.00 0.00 5.73
3095 3163 2.026636 TGACCAAATTAGTTCCTCCGGG 60.027 50.000 0.00 0.00 0.00 5.73
3096 3164 3.343941 TGACCAAATTAGTTCCTCCGG 57.656 47.619 0.00 0.00 0.00 5.14
3097 3165 4.261801 ACATGACCAAATTAGTTCCTCCG 58.738 43.478 0.00 0.00 0.00 4.63
3098 3166 5.946377 AGAACATGACCAAATTAGTTCCTCC 59.054 40.000 0.00 0.00 36.84 4.30
3099 3167 6.881602 AGAGAACATGACCAAATTAGTTCCTC 59.118 38.462 0.00 0.00 36.84 3.71
3100 3168 6.784031 AGAGAACATGACCAAATTAGTTCCT 58.216 36.000 0.00 0.00 36.84 3.36
3101 3169 8.738645 ATAGAGAACATGACCAAATTAGTTCC 57.261 34.615 0.00 0.00 36.84 3.62
3102 3170 8.831550 GGATAGAGAACATGACCAAATTAGTTC 58.168 37.037 0.00 0.00 36.52 3.01
3103 3171 8.328758 TGGATAGAGAACATGACCAAATTAGTT 58.671 33.333 0.00 0.00 0.00 2.24
3104 3172 7.861629 TGGATAGAGAACATGACCAAATTAGT 58.138 34.615 0.00 0.00 0.00 2.24
3105 3173 7.989741 ACTGGATAGAGAACATGACCAAATTAG 59.010 37.037 0.00 0.00 0.00 1.73
3106 3174 7.770433 CACTGGATAGAGAACATGACCAAATTA 59.230 37.037 0.00 0.00 0.00 1.40
3107 3175 6.600822 CACTGGATAGAGAACATGACCAAATT 59.399 38.462 0.00 0.00 0.00 1.82
3108 3176 6.070021 TCACTGGATAGAGAACATGACCAAAT 60.070 38.462 0.00 0.00 0.00 2.32
3109 3177 5.248248 TCACTGGATAGAGAACATGACCAAA 59.752 40.000 0.00 0.00 0.00 3.28
3110 3178 4.777366 TCACTGGATAGAGAACATGACCAA 59.223 41.667 0.00 0.00 0.00 3.67
3111 3179 4.352893 TCACTGGATAGAGAACATGACCA 58.647 43.478 0.00 0.00 0.00 4.02
3112 3180 5.163364 ACATCACTGGATAGAGAACATGACC 60.163 44.000 0.00 0.00 30.87 4.02
3113 3181 5.911752 ACATCACTGGATAGAGAACATGAC 58.088 41.667 0.00 0.00 30.87 3.06
3114 3182 7.660030 TTACATCACTGGATAGAGAACATGA 57.340 36.000 0.00 0.00 30.87 3.07
3115 3183 7.387122 CCATTACATCACTGGATAGAGAACATG 59.613 40.741 0.00 0.00 31.38 3.21
3116 3184 7.071698 ACCATTACATCACTGGATAGAGAACAT 59.928 37.037 0.00 0.00 34.08 2.71
3117 3185 6.384015 ACCATTACATCACTGGATAGAGAACA 59.616 38.462 0.00 0.00 34.08 3.18
3118 3186 6.703607 CACCATTACATCACTGGATAGAGAAC 59.296 42.308 0.00 0.00 34.08 3.01
3119 3187 6.686378 GCACCATTACATCACTGGATAGAGAA 60.686 42.308 0.00 0.00 34.08 2.87
3120 3188 5.221521 GCACCATTACATCACTGGATAGAGA 60.222 44.000 0.00 0.00 34.08 3.10
3121 3189 4.993584 GCACCATTACATCACTGGATAGAG 59.006 45.833 0.00 0.00 34.08 2.43
3122 3190 4.655649 AGCACCATTACATCACTGGATAGA 59.344 41.667 0.00 0.00 34.08 1.98
3123 3191 4.965814 AGCACCATTACATCACTGGATAG 58.034 43.478 0.00 0.00 34.08 2.08
3124 3192 5.838521 TCTAGCACCATTACATCACTGGATA 59.161 40.000 0.00 0.00 34.08 2.59
3125 3193 3.939740 AGCACCATTACATCACTGGAT 57.060 42.857 0.00 0.00 34.08 3.41
3126 3194 4.030216 TCTAGCACCATTACATCACTGGA 58.970 43.478 0.00 0.00 34.08 3.86
3127 3195 4.122776 GTCTAGCACCATTACATCACTGG 58.877 47.826 0.00 0.00 36.09 4.00
3128 3196 4.758688 TGTCTAGCACCATTACATCACTG 58.241 43.478 0.00 0.00 0.00 3.66
3129 3197 5.620738 ATGTCTAGCACCATTACATCACT 57.379 39.130 0.00 0.00 0.00 3.41
3130 3198 6.489675 CAAATGTCTAGCACCATTACATCAC 58.510 40.000 0.00 0.00 31.30 3.06
3131 3199 5.066375 GCAAATGTCTAGCACCATTACATCA 59.934 40.000 0.00 0.00 31.30 3.07
3132 3200 5.066375 TGCAAATGTCTAGCACCATTACATC 59.934 40.000 0.00 0.00 32.55 3.06
3133 3201 4.949238 TGCAAATGTCTAGCACCATTACAT 59.051 37.500 0.00 0.00 32.55 2.29
3134 3202 4.331108 TGCAAATGTCTAGCACCATTACA 58.669 39.130 0.00 0.00 32.55 2.41
3135 3203 4.963276 TGCAAATGTCTAGCACCATTAC 57.037 40.909 0.00 1.55 32.55 1.89
3142 3210 3.287312 GCAAAGTGCAAATGTCTAGCA 57.713 42.857 0.00 0.00 44.26 3.49
3154 3222 1.016627 TATCATGCTCGGCAAAGTGC 58.983 50.000 2.68 0.00 43.62 4.40
3155 3223 3.763097 TTTATCATGCTCGGCAAAGTG 57.237 42.857 2.68 0.00 43.62 3.16
3156 3224 3.696051 ACATTTATCATGCTCGGCAAAGT 59.304 39.130 2.68 0.00 43.62 2.66
3157 3225 4.297299 ACATTTATCATGCTCGGCAAAG 57.703 40.909 2.68 0.12 43.62 2.77
3158 3226 4.717233 AACATTTATCATGCTCGGCAAA 57.283 36.364 2.68 0.00 43.62 3.68
3159 3227 4.717233 AAACATTTATCATGCTCGGCAA 57.283 36.364 2.68 0.00 43.62 4.52
3160 3228 4.717233 AAAACATTTATCATGCTCGGCA 57.283 36.364 1.01 1.01 44.86 5.69
3343 3424 7.878477 ACATCAAAACATTTGTATTGCTCAG 57.122 32.000 3.06 0.00 0.00 3.35



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.