AutoCloner

Multiple sequence alignment - TraesCS2B01G549100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G549100	chr2B	100.000	2548	0	0	1	2548	745136612	745139159	0.000000e+00	4706.0
1	TraesCS2B01G549100	chr2B	94.261	1934	90	14	569	2496	546410286	546412204	0.000000e+00	2937.0
2	TraesCS2B01G549100	chr2D	95.401	1935	81	8	567	2496	64508696	64510627	0.000000e+00	3073.0
3	TraesCS2B01G549100	chr2D	94.376	569	30	2	1	568	155382146	155381579	0.000000e+00	872.0
4	TraesCS2B01G549100	chr3B	94.794	1940	92	5	560	2496	53523434	53525367	0.000000e+00	3014.0
5	TraesCS2B01G549100	chr3B	94.255	1932	106	5	569	2496	687040066	687041996	0.000000e+00	2948.0
6	TraesCS2B01G549100	chr3B	93.612	1941	112	7	559	2496	804661022	804662953	0.000000e+00	2887.0
7	TraesCS2B01G549100	chr3B	96.296	54	2	0	2495	2548	826997540	826997487	3.490000e-14	89.8
8	TraesCS2B01G549100	chr3B	96.296	54	2	0	2495	2548	827543152	827543099	3.490000e-14	89.8
9	TraesCS2B01G549100	chr5B	94.878	1933	88	9	569	2496	26059378	26057452	0.000000e+00	3011.0
10	TraesCS2B01G549100	chrUn	94.490	1942	99	8	560	2496	60558703	60560641	0.000000e+00	2987.0
11	TraesCS2B01G549100	chr1B	94.048	1932	109	5	569	2496	542264940	542266869	0.000000e+00	2926.0
12	TraesCS2B01G549100	chr4B	93.837	1931	114	5	569	2496	645967796	645965868	0.000000e+00	2902.0
13	TraesCS2B01G549100	chr4B	96.364	55	2	0	2494	2548	129770069	129770015	9.710000e-15	91.6
14	TraesCS2B01G549100	chr5D	94.366	568	32	0	1	568	338211350	338210783	0.000000e+00	872.0
15	TraesCS2B01G549100	chr5D	94.190	568	29	4	1	566	230114539	230113974	0.000000e+00	863.0
16	TraesCS2B01G549100	chr5D	94.025	569	32	2	1	568	269078016	269077449	0.000000e+00	861.0
17	TraesCS2B01G549100	chr3D	94.200	569	31	2	1	568	360490045	360489478	0.000000e+00	867.0
18	TraesCS2B01G549100	chr7D	94.025	569	32	2	1	568	411292082	411292649	0.000000e+00	861.0
19	TraesCS2B01G549100	chr7D	94.025	569	31	3	1	568	410398280	410398846	0.000000e+00	859.0
20	TraesCS2B01G549100	chr6D	94.025	569	32	2	1	568	161035764	161035197	0.000000e+00	861.0
21	TraesCS2B01G549100	chr1D	94.025	569	30	3	1	568	120978895	120979460	0.000000e+00	859.0
22	TraesCS2B01G549100	chr7B	98.148	54	1	0	2495	2548	516488850	516488903	7.500000e-16	95.3
23	TraesCS2B01G549100	chr6B	98.148	54	1	0	2495	2548	1766430	1766377	7.500000e-16	95.3
24	TraesCS2B01G549100	chr6B	98.039	51	1	0	2497	2547	713092684	713092734	3.490000e-14	89.8
25	TraesCS2B01G549100	chr4A	98.148	54	1	0	2495	2548	738547451	738547504	7.500000e-16	95.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G549100	chr2B	745136612	745139159	2547	False	4706	4706	100.000	1	2548	1	chr2B.!!$F2	2547
1	TraesCS2B01G549100	chr2B	546410286	546412204	1918	False	2937	2937	94.261	569	2496	1	chr2B.!!$F1	1927
2	TraesCS2B01G549100	chr2D	64508696	64510627	1931	False	3073	3073	95.401	567	2496	1	chr2D.!!$F1	1929
3	TraesCS2B01G549100	chr2D	155381579	155382146	567	True	872	872	94.376	1	568	1	chr2D.!!$R1	567
4	TraesCS2B01G549100	chr3B	53523434	53525367	1933	False	3014	3014	94.794	560	2496	1	chr3B.!!$F1	1936
5	TraesCS2B01G549100	chr3B	687040066	687041996	1930	False	2948	2948	94.255	569	2496	1	chr3B.!!$F2	1927
6	TraesCS2B01G549100	chr3B	804661022	804662953	1931	False	2887	2887	93.612	559	2496	1	chr3B.!!$F3	1937
7	TraesCS2B01G549100	chr5B	26057452	26059378	1926	True	3011	3011	94.878	569	2496	1	chr5B.!!$R1	1927
8	TraesCS2B01G549100	chrUn	60558703	60560641	1938	False	2987	2987	94.490	560	2496	1	chrUn.!!$F1	1936
9	TraesCS2B01G549100	chr1B	542264940	542266869	1929	False	2926	2926	94.048	569	2496	1	chr1B.!!$F1	1927
10	TraesCS2B01G549100	chr4B	645965868	645967796	1928	True	2902	2902	93.837	569	2496	1	chr4B.!!$R2	1927
11	TraesCS2B01G549100	chr5D	338210783	338211350	567	True	872	872	94.366	1	568	1	chr5D.!!$R3	567
12	TraesCS2B01G549100	chr5D	230113974	230114539	565	True	863	863	94.190	1	566	1	chr5D.!!$R1	565
13	TraesCS2B01G549100	chr5D	269077449	269078016	567	True	861	861	94.025	1	568	1	chr5D.!!$R2	567
14	TraesCS2B01G549100	chr3D	360489478	360490045	567	True	867	867	94.200	1	568	1	chr3D.!!$R1	567
15	TraesCS2B01G549100	chr7D	411292082	411292649	567	False	861	861	94.025	1	568	1	chr7D.!!$F2	567
16	TraesCS2B01G549100	chr7D	410398280	410398846	566	False	859	859	94.025	1	568	1	chr7D.!!$F1	567
17	TraesCS2B01G549100	chr6D	161035197	161035764	567	True	861	861	94.025	1	568	1	chr6D.!!$R1	567
18	TraesCS2B01G549100	chr1D	120978895	120979460	565	False	859	859	94.025	1	568	1	chr1D.!!$F1	567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
267	268	0.030908	GACCATCGTCGGAAGGCTAG	59.969	60.0	0.0	0.0	34.33	3.42	F
1072	1077	0.179097	GGAGATGCCTGTCTTCGTCC	60.179	60.0	0.0	0.0	0.00	4.79	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1386	1393	0.529833	GCTAGCTCTCTGTCAGTGCA	59.470	55.0	7.7	0.0	43.07	4.57	R
2517	2544	0.103572	GGCCTTACGAACCGATGCTA	59.896	55.0	0.0	0.0	0.00	3.49	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
44	45	1.069823	GAGGATGCAGGTGATCGACAT	59.930	52.381	0.00	0.00	0.00	3.06
80	81	2.356432	CCAGAGACATGGAAATGGAGCA	60.356	50.000	0.00	0.00	43.57	4.26
198	199	1.987855	CGGAGGCAGGGTAGGACAA	60.988	63.158	0.00	0.00	0.00	3.18
202	203	0.325296	AGGCAGGGTAGGACAATCGA	60.325	55.000	0.00	0.00	0.00	3.59
265	266	1.258445	AAGACCATCGTCGGAAGGCT	61.258	55.000	0.00	0.00	44.28	4.58
266	267	0.395311	AGACCATCGTCGGAAGGCTA	60.395	55.000	0.00	0.00	44.28	3.93
267	268	0.030908	GACCATCGTCGGAAGGCTAG	59.969	60.000	0.00	0.00	34.33	3.42
426	427	2.335316	TGTAACTTTGCCTCAACGGT	57.665	45.000	0.00	0.00	34.25	4.83
580	581	9.344772	ACGCAATAAGTAATGGGTTAATTATCA	57.655	29.630	2.59	0.00	39.07	2.15
685	686	3.261981	ACTCGTTCTGTGAACTTTGGT	57.738	42.857	8.51	0.77	0.00	3.67
693	694	0.586802	GTGAACTTTGGTGTCTCCGC	59.413	55.000	0.00	0.00	39.52	5.54
758	759	2.030805	GCAGAGGCGCCCTATTTTATTG	60.031	50.000	26.15	9.36	31.76	1.90
764	765	3.211045	GCGCCCTATTTTATTGAGACCA	58.789	45.455	0.00	0.00	0.00	4.02
858	861	4.760047	GACAGCGGCGGTGACCAT	62.760	66.667	41.06	22.06	34.87	3.55
1013	1016	0.674895	AGCTCCATGTCTTCCGCAAC	60.675	55.000	0.00	0.00	0.00	4.17
1019	1022	1.201429	ATGTCTTCCGCAACCTCCCT	61.201	55.000	0.00	0.00	0.00	4.20
1025	1028	2.429930	CGCAACCTCCCTCACCAA	59.570	61.111	0.00	0.00	0.00	3.67
1039	1042	0.603707	CACCAACTCACGGATGCAGT	60.604	55.000	0.00	0.00	0.00	4.40
1043	1046	2.046988	CTCACGGATGCAGTGCCA	60.047	61.111	13.72	0.69	39.31	4.92
1072	1077	0.179097	GGAGATGCCTGTCTTCGTCC	60.179	60.000	0.00	0.00	0.00	4.79
1119	1124	0.765510	GGAGGGTTTCTCACACACCT	59.234	55.000	0.00	0.00	44.19	4.00
1137	1142	1.553248	CCTAGGAACCACAATCGTCCA	59.447	52.381	1.05	0.00	0.00	4.02
1219	1226	4.095036	GGGATCTTTGAGAAATCGGTTGAC	59.905	45.833	0.00	0.00	0.00	3.18
1493	1500	5.938438	TTTGCAAATACTTTTGGGCATTC	57.062	34.783	8.05	0.00	42.09	2.67
1503	1510	3.637911	TTTGGGCATTCGTAGGTATGT	57.362	42.857	4.32	0.00	0.00	2.29
1508	1515	5.686753	TGGGCATTCGTAGGTATGTTAATT	58.313	37.500	4.32	0.00	0.00	1.40
1838	1852	7.436970	ACCGTGATTTAAATCAAAGACCAAAAC	59.563	33.333	28.02	13.25	46.13	2.43
1857	1871	2.893424	ACCTCATGGAAAATGTGCCTT	58.107	42.857	0.00	0.00	37.04	4.35
2106	2121	9.809096	AATGTATACATAGTGAGACTGTGAAAG	57.191	33.333	18.56	0.00	39.34	2.62
2141	2161	3.194005	AGTGAGACCGTGAATGTTTGT	57.806	42.857	0.00	0.00	0.00	2.83
2322	2349	8.969121	TGCATGTTAGTTCATGACTTATTTTG	57.031	30.769	10.28	0.00	45.41	2.44
2349	2376	4.870021	ATAAAATGGAGGGCTTCTCACT	57.130	40.909	9.20	0.00	44.19	3.41
2426	2453	9.131791	GGTTTAGGGAAGAAATTATATGCTTGA	57.868	33.333	0.00	0.00	0.00	3.02
2496	2523	5.186198	AGATAAGATGCAACACAAGTACCC	58.814	41.667	0.00	0.00	0.00	3.69
2497	2524	2.949177	AGATGCAACACAAGTACCCA	57.051	45.000	0.00	0.00	0.00	4.51
2498	2525	2.504367	AGATGCAACACAAGTACCCAC	58.496	47.619	0.00	0.00	0.00	4.61
2499	2526	2.106511	AGATGCAACACAAGTACCCACT	59.893	45.455	0.00	0.00	36.19	4.00
2500	2527	3.326588	AGATGCAACACAAGTACCCACTA	59.673	43.478	0.00	0.00	33.48	2.74
2501	2528	3.120321	TGCAACACAAGTACCCACTAG	57.880	47.619	0.00	0.00	33.48	2.57
2502	2529	2.436542	TGCAACACAAGTACCCACTAGT	59.563	45.455	0.00	0.00	33.48	2.57
2503	2530	2.806244	GCAACACAAGTACCCACTAGTG	59.194	50.000	16.34	16.34	33.48	2.74
2504	2531	2.806244	CAACACAAGTACCCACTAGTGC	59.194	50.000	17.86	3.70	33.48	4.40
2505	2532	2.043992	ACACAAGTACCCACTAGTGCA	58.956	47.619	17.86	1.67	33.48	4.57
2506	2533	2.037251	ACACAAGTACCCACTAGTGCAG	59.963	50.000	17.86	12.88	33.48	4.41
2507	2534	2.299013	CACAAGTACCCACTAGTGCAGA	59.701	50.000	17.86	1.04	33.48	4.26
2508	2535	2.969950	ACAAGTACCCACTAGTGCAGAA	59.030	45.455	17.86	0.00	33.48	3.02
2509	2536	3.244112	ACAAGTACCCACTAGTGCAGAAC	60.244	47.826	17.86	11.64	33.48	3.01
2510	2537	1.900486	AGTACCCACTAGTGCAGAACC	59.100	52.381	17.86	2.75	31.45	3.62
2511	2538	0.892755	TACCCACTAGTGCAGAACCG	59.107	55.000	17.86	1.75	0.00	4.44
2512	2539	1.079127	CCCACTAGTGCAGAACCGG	60.079	63.158	17.86	0.00	0.00	5.28
2513	2540	1.079127	CCACTAGTGCAGAACCGGG	60.079	63.158	17.86	0.00	0.00	5.73
2514	2541	1.741770	CACTAGTGCAGAACCGGGC	60.742	63.158	10.54	0.00	0.00	6.13
2515	2542	2.214216	ACTAGTGCAGAACCGGGCA	61.214	57.895	6.32	1.81	37.77	5.36
2516	2543	1.221840	CTAGTGCAGAACCGGGCAT	59.778	57.895	6.32	0.00	42.75	4.40
2517	2544	0.392998	CTAGTGCAGAACCGGGCATT	60.393	55.000	6.32	4.92	42.75	3.56
2518	2545	0.906066	TAGTGCAGAACCGGGCATTA	59.094	50.000	6.32	3.80	42.75	1.90
2519	2546	0.392998	AGTGCAGAACCGGGCATTAG	60.393	55.000	6.32	0.00	42.75	1.73
2520	2547	1.748879	TGCAGAACCGGGCATTAGC	60.749	57.895	6.32	2.35	41.10	3.09
2521	2548	1.748879	GCAGAACCGGGCATTAGCA	60.749	57.895	6.32	0.00	44.61	3.49
2522	2549	1.103398	GCAGAACCGGGCATTAGCAT	61.103	55.000	6.32	0.00	44.61	3.79
2523	2550	0.947244	CAGAACCGGGCATTAGCATC	59.053	55.000	6.32	0.00	44.61	3.91
2524	2551	0.532862	AGAACCGGGCATTAGCATCG	60.533	55.000	6.32	0.00	44.61	3.84
2526	2553	2.111043	CCGGGCATTAGCATCGGT	59.889	61.111	11.45	0.00	46.67	4.69
2527	2554	1.525995	CCGGGCATTAGCATCGGTT	60.526	57.895	11.45	0.00	46.67	4.44
2528	2555	1.507141	CCGGGCATTAGCATCGGTTC	61.507	60.000	11.45	0.00	46.67	3.62
2529	2556	1.831389	CGGGCATTAGCATCGGTTCG	61.831	60.000	0.00	0.00	44.61	3.95
2530	2557	0.814010	GGGCATTAGCATCGGTTCGT	60.814	55.000	0.00	0.00	44.61	3.85
2531	2558	1.539496	GGGCATTAGCATCGGTTCGTA	60.539	52.381	0.00	0.00	44.61	3.43
2532	2559	2.206750	GGCATTAGCATCGGTTCGTAA	58.793	47.619	0.00	0.00	44.61	3.18
2533	2560	2.221055	GGCATTAGCATCGGTTCGTAAG	59.779	50.000	0.00	0.00	44.61	2.34
2534	2561	2.221055	GCATTAGCATCGGTTCGTAAGG	59.779	50.000	0.00	0.00	41.58	2.69
2535	2562	1.930567	TTAGCATCGGTTCGTAAGGC	58.069	50.000	0.00	0.00	38.47	4.35
2536	2563	0.103572	TAGCATCGGTTCGTAAGGCC	59.896	55.000	0.00	0.00	38.47	5.19
2537	2564	2.178235	GCATCGGTTCGTAAGGCCC	61.178	63.158	0.00	0.00	38.47	5.80
2538	2565	1.520666	CATCGGTTCGTAAGGCCCT	59.479	57.895	0.00	0.00	38.47	5.19
2539	2566	0.748450	CATCGGTTCGTAAGGCCCTA	59.252	55.000	0.00	0.00	38.47	3.53
2540	2567	1.343465	CATCGGTTCGTAAGGCCCTAT	59.657	52.381	0.00	0.00	38.47	2.57
2541	2568	2.363306	TCGGTTCGTAAGGCCCTATA	57.637	50.000	0.00	0.00	38.47	1.31
2542	2569	2.233271	TCGGTTCGTAAGGCCCTATAG	58.767	52.381	0.00	0.00	38.47	1.31
2543	2570	1.959282	CGGTTCGTAAGGCCCTATAGT	59.041	52.381	0.00	0.00	38.47	2.12
2544	2571	2.288030	CGGTTCGTAAGGCCCTATAGTG	60.288	54.545	0.00	0.00	38.47	2.74
2545	2572	2.547430	GGTTCGTAAGGCCCTATAGTGC	60.547	54.545	0.00	0.00	38.47	4.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	2.559440	GATCACCTGCATCCTCAAGAC	58.441	52.381	0.00	0.00	0.00	3.01
44	45	2.843730	TCTCTGGCCTGGTAGCAAATTA	59.156	45.455	10.07	0.00	0.00	1.40
80	81	1.148310	CATGACAACTCCGCGAAACT	58.852	50.000	8.23	0.00	0.00	2.66
139	140	2.285668	AGGCTCTTGGGGCTGCTA	60.286	61.111	0.00	0.00	40.64	3.49
187	188	2.816411	TCACTTCGATTGTCCTACCCT	58.184	47.619	0.00	0.00	0.00	4.34
190	191	2.921754	CCGTTCACTTCGATTGTCCTAC	59.078	50.000	0.00	0.00	0.00	3.18
198	199	2.813908	GCGGCCGTTCACTTCGAT	60.814	61.111	28.70	0.00	0.00	3.59
202	203	2.978010	CCTTGCGGCCGTTCACTT	60.978	61.111	28.70	0.00	0.00	3.16
265	266	1.556911	AGCTAAAAGGCTGAGCTGCTA	59.443	47.619	15.69	0.00	44.77	3.49
266	267	0.327591	AGCTAAAAGGCTGAGCTGCT	59.672	50.000	15.69	0.00	44.77	4.24
267	268	1.172175	AAGCTAAAAGGCTGAGCTGC	58.828	50.000	16.78	5.79	45.74	5.25
309	310	4.413087	CAGAACACTCACGACCTACATAC	58.587	47.826	0.00	0.00	0.00	2.39
580	581	2.158385	TGGACACCACTAAGGGCAAAAT	60.158	45.455	0.00	0.00	43.89	1.82
749	750	5.577835	GCGTGCAATGGTCTCAATAAAATA	58.422	37.500	0.00	0.00	0.00	1.40
758	759	2.476051	CACGCGTGCAATGGTCTC	59.524	61.111	28.16	0.00	0.00	3.36
806	807	1.128200	ACACCCGCAATGGCTCTATA	58.872	50.000	0.00	0.00	38.10	1.31
858	861	2.664851	CCGTGCTCTTTGTCGCCA	60.665	61.111	0.00	0.00	0.00	5.69
1013	1016	1.293498	CGTGAGTTGGTGAGGGAGG	59.707	63.158	0.00	0.00	0.00	4.30
1019	1022	0.320683	CTGCATCCGTGAGTTGGTGA	60.321	55.000	0.00	0.00	0.00	4.02
1025	1028	2.046892	GGCACTGCATCCGTGAGT	60.047	61.111	8.64	0.00	34.35	3.41
1085	1090	3.699955	CTCCGATCAACGCTCGCCA	62.700	63.158	0.00	0.00	41.07	5.69
1119	1124	3.517901	AGAATGGACGATTGTGGTTCCTA	59.482	43.478	0.00	0.00	0.00	2.94
1137	1142	2.967599	TCTCGCTGCACATGTAGAAT	57.032	45.000	0.00	0.00	0.00	2.40
1219	1226	2.289444	ACCTACATGAACACGGAACAGG	60.289	50.000	0.00	0.00	0.00	4.00
1386	1393	0.529833	GCTAGCTCTCTGTCAGTGCA	59.470	55.000	7.70	0.00	43.07	4.57
1493	1500	7.277098	ACAACTAGTGCAATTAACATACCTACG	59.723	37.037	0.00	0.00	0.00	3.51
1508	1515	7.711846	ACATTTTCAACATTACAACTAGTGCA	58.288	30.769	0.00	0.00	0.00	4.57
1838	1852	3.181483	GCTAAGGCACATTTTCCATGAGG	60.181	47.826	0.00	0.00	38.54	3.86
1857	1871	5.269991	AGGTGTAAACATCTACCAGAGCTA	58.730	41.667	0.00	0.00	35.13	3.32
2141	2161	3.450578	GAAAACCACTCTCACACGTGTA	58.549	45.455	22.90	5.00	0.00	2.90
2322	2349	6.071391	TGAGAAGCCCTCCATTTTATTCAAAC	60.071	38.462	1.79	0.00	41.25	2.93
2334	2361	1.613630	GGGAGTGAGAAGCCCTCCA	60.614	63.158	7.19	0.00	45.42	3.86
2349	2376	5.750524	TGTCATTAATGAAAATCGGAGGGA	58.249	37.500	19.55	0.00	38.75	4.20
2471	2498	6.992715	GGGTACTTGTGTTGCATCTTATCTAT	59.007	38.462	0.00	0.00	0.00	1.98
2496	2523	1.741770	GCCCGGTTCTGCACTAGTG	60.742	63.158	18.93	18.93	0.00	2.74
2497	2524	1.553690	ATGCCCGGTTCTGCACTAGT	61.554	55.000	5.18	0.00	40.88	2.57
2498	2525	0.392998	AATGCCCGGTTCTGCACTAG	60.393	55.000	5.18	0.00	40.88	2.57
2499	2526	0.906066	TAATGCCCGGTTCTGCACTA	59.094	50.000	5.18	0.00	40.88	2.74
2500	2527	0.392998	CTAATGCCCGGTTCTGCACT	60.393	55.000	5.18	0.00	40.88	4.40
2501	2528	1.993369	GCTAATGCCCGGTTCTGCAC	61.993	60.000	5.18	0.00	40.88	4.57
2502	2529	1.748879	GCTAATGCCCGGTTCTGCA	60.749	57.895	5.55	5.55	42.52	4.41
2503	2530	1.103398	ATGCTAATGCCCGGTTCTGC	61.103	55.000	0.00	0.00	38.71	4.26
2504	2531	0.947244	GATGCTAATGCCCGGTTCTG	59.053	55.000	0.00	0.00	38.71	3.02
2505	2532	0.532862	CGATGCTAATGCCCGGTTCT	60.533	55.000	0.00	0.00	38.71	3.01
2506	2533	1.507141	CCGATGCTAATGCCCGGTTC	61.507	60.000	0.00	0.00	43.98	3.62
2507	2534	1.525995	CCGATGCTAATGCCCGGTT	60.526	57.895	0.00	0.00	43.98	4.44
2508	2535	2.111043	CCGATGCTAATGCCCGGT	59.889	61.111	0.00	0.00	43.98	5.28
2510	2537	1.831389	CGAACCGATGCTAATGCCCG	61.831	60.000	0.00	0.00	38.71	6.13
2511	2538	0.814010	ACGAACCGATGCTAATGCCC	60.814	55.000	0.00	0.00	38.71	5.36
2512	2539	1.860676	TACGAACCGATGCTAATGCC	58.139	50.000	0.00	0.00	38.71	4.40
2513	2540	2.221055	CCTTACGAACCGATGCTAATGC	59.779	50.000	0.00	0.00	40.20	3.56
2514	2541	2.221055	GCCTTACGAACCGATGCTAATG	59.779	50.000	0.00	0.00	0.00	1.90
2515	2542	2.480845	GCCTTACGAACCGATGCTAAT	58.519	47.619	0.00	0.00	0.00	1.73
2516	2543	1.472026	GGCCTTACGAACCGATGCTAA	60.472	52.381	0.00	0.00	0.00	3.09
2517	2544	0.103572	GGCCTTACGAACCGATGCTA	59.896	55.000	0.00	0.00	0.00	3.49
2518	2545	1.153429	GGCCTTACGAACCGATGCT	60.153	57.895	0.00	0.00	0.00	3.79
2519	2546	2.178235	GGGCCTTACGAACCGATGC	61.178	63.158	0.84	0.00	0.00	3.91
2520	2547	0.748450	TAGGGCCTTACGAACCGATG	59.252	55.000	13.45	0.00	0.00	3.84
2521	2548	1.713297	ATAGGGCCTTACGAACCGAT	58.287	50.000	13.45	0.00	0.00	4.18
2522	2549	2.233271	CTATAGGGCCTTACGAACCGA	58.767	52.381	13.45	0.00	0.00	4.69
2523	2550	1.959282	ACTATAGGGCCTTACGAACCG	59.041	52.381	13.45	0.00	0.00	4.44
2524	2551	2.547430	GCACTATAGGGCCTTACGAACC	60.547	54.545	16.62	0.00	0.00	3.62
2525	2552	2.547430	GGCACTATAGGGCCTTACGAAC	60.547	54.545	34.62	9.17	46.74	3.95
2526	2553	1.690352	GGCACTATAGGGCCTTACGAA	59.310	52.381	34.62	0.00	46.74	3.85
2527	2554	1.335145	GGCACTATAGGGCCTTACGA	58.665	55.000	34.62	0.00	46.74	3.43
2528	2555	3.908737	GGCACTATAGGGCCTTACG	57.091	57.895	34.62	2.31	46.74	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.