Multiple sequence alignment - TraesCS2B01G548000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G548000 chr2B 100.000 3543 0 0 1 3543 744197504 744201046 0.000000e+00 6543.0
1 TraesCS2B01G548000 chr2B 97.782 541 12 0 1 541 3816572 3817112 0.000000e+00 933.0
2 TraesCS2B01G548000 chr2B 96.494 542 18 1 1 541 31899710 31900251 0.000000e+00 894.0
3 TraesCS2B01G548000 chr2B 96.310 542 19 1 1 541 236105750 236105209 0.000000e+00 889.0
4 TraesCS2B01G548000 chr2B 78.463 1184 214 32 987 2156 744178870 744180026 0.000000e+00 736.0
5 TraesCS2B01G548000 chr2B 79.439 535 81 16 3024 3543 794491535 794491015 5.630000e-93 351.0
6 TraesCS2B01G548000 chr2B 85.161 310 44 2 994 1302 651962731 651962423 2.050000e-82 316.0
7 TraesCS2B01G548000 chr2B 78.313 249 54 0 1019 1267 661191876 661192124 1.020000e-35 161.0
8 TraesCS2B01G548000 chr2B 78.912 147 27 4 2246 2390 744180084 744180228 2.910000e-16 97.1
9 TraesCS2B01G548000 chr2D 84.615 2353 263 55 651 2973 609883842 609886125 0.000000e+00 2248.0
10 TraesCS2B01G548000 chr2D 92.683 574 36 3 2973 3543 609888110 609888680 0.000000e+00 822.0
11 TraesCS2B01G548000 chr2D 83.713 307 48 2 999 1304 554552368 554552673 4.480000e-74 289.0
12 TraesCS2B01G548000 chr2D 83.051 118 9 7 2904 3016 636939923 636940034 2.910000e-16 97.1
13 TraesCS2B01G548000 chr2D 100.000 32 0 0 592 623 551213641 551213610 3.820000e-05 60.2
14 TraesCS2B01G548000 chr2A 82.754 1583 205 37 852 2399 742757271 742758820 0.000000e+00 1349.0
15 TraesCS2B01G548000 chr2A 88.852 915 95 5 1709 2618 742764054 742764966 0.000000e+00 1118.0
16 TraesCS2B01G548000 chr2A 84.050 953 117 20 760 1689 742763040 742763980 0.000000e+00 885.0
17 TraesCS2B01G548000 chr2A 88.599 614 42 14 2617 3227 742765204 742765792 0.000000e+00 721.0
18 TraesCS2B01G548000 chr2A 76.284 1324 241 49 1087 2390 742750258 742751528 3.860000e-179 638.0
19 TraesCS2B01G548000 chr2A 79.255 376 48 20 2394 2761 742758848 742759201 5.910000e-58 235.0
20 TraesCS2B01G548000 chr2A 81.646 158 20 7 2904 3053 762726885 762726729 4.800000e-24 122.0
21 TraesCS2B01G548000 chr2A 89.535 86 9 0 1000 1085 742732805 742732890 3.740000e-20 110.0
22 TraesCS2B01G548000 chrUn 97.967 541 10 1 1 541 371995662 371995123 0.000000e+00 937.0
23 TraesCS2B01G548000 chrUn 97.782 541 12 0 1 541 177180164 177179624 0.000000e+00 933.0
24 TraesCS2B01G548000 chrUn 97.782 541 12 0 1 541 315276134 315276674 0.000000e+00 933.0
25 TraesCS2B01G548000 chr7B 97.417 542 13 1 1 541 592415824 592415283 0.000000e+00 922.0
26 TraesCS2B01G548000 chr7B 97.020 537 16 0 5 541 714492012 714492548 0.000000e+00 904.0
27 TraesCS2B01G548000 chr3B 96.488 541 19 0 1 541 29518683 29518143 0.000000e+00 894.0
28 TraesCS2B01G548000 chr3B 88.889 45 5 0 576 620 818938486 818938442 4.940000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G548000 chr2B 744197504 744201046 3542 False 6543.00 6543 100.0000 1 3543 1 chr2B.!!$F4 3542
1 TraesCS2B01G548000 chr2B 3816572 3817112 540 False 933.00 933 97.7820 1 541 1 chr2B.!!$F1 540
2 TraesCS2B01G548000 chr2B 31899710 31900251 541 False 894.00 894 96.4940 1 541 1 chr2B.!!$F2 540
3 TraesCS2B01G548000 chr2B 236105209 236105750 541 True 889.00 889 96.3100 1 541 1 chr2B.!!$R1 540
4 TraesCS2B01G548000 chr2B 744178870 744180228 1358 False 416.55 736 78.6875 987 2390 2 chr2B.!!$F5 1403
5 TraesCS2B01G548000 chr2B 794491015 794491535 520 True 351.00 351 79.4390 3024 3543 1 chr2B.!!$R3 519
6 TraesCS2B01G548000 chr2D 609883842 609888680 4838 False 1535.00 2248 88.6490 651 3543 2 chr2D.!!$F3 2892
7 TraesCS2B01G548000 chr2A 742757271 742765792 8521 False 861.60 1349 84.7020 760 3227 5 chr2A.!!$F3 2467
8 TraesCS2B01G548000 chr2A 742750258 742751528 1270 False 638.00 638 76.2840 1087 2390 1 chr2A.!!$F2 1303
9 TraesCS2B01G548000 chrUn 371995123 371995662 539 True 937.00 937 97.9670 1 541 1 chrUn.!!$R2 540
10 TraesCS2B01G548000 chrUn 177179624 177180164 540 True 933.00 933 97.7820 1 541 1 chrUn.!!$R1 540
11 TraesCS2B01G548000 chrUn 315276134 315276674 540 False 933.00 933 97.7820 1 541 1 chrUn.!!$F1 540
12 TraesCS2B01G548000 chr7B 592415283 592415824 541 True 922.00 922 97.4170 1 541 1 chr7B.!!$R1 540
13 TraesCS2B01G548000 chr7B 714492012 714492548 536 False 904.00 904 97.0200 5 541 1 chr7B.!!$F1 536
14 TraesCS2B01G548000 chr3B 29518143 29518683 540 True 894.00 894 96.4880 1 541 1 chr3B.!!$R1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
552 554 0.179000 CACATAGTCTCTGCCACCCC 59.821 60.0 0.0 0.0 0.00 4.95 F
1878 7838 0.107017 CACTTGAGGCCGATCCCAAT 60.107 55.0 0.0 0.0 34.51 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2311 8283 0.036732 ACCTTGGATGCACACACGAT 59.963 50.0 0.0 0.0 0.00 3.73 R
3460 11677 0.381089 ATGTACTCGACACTAGCGGC 59.619 55.0 0.0 0.0 42.17 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
178 180 2.671370 TATCCCGCGCTACCGTCTCT 62.671 60.000 5.56 0.00 36.67 3.10
259 261 0.380733 TACGGATCAGTGCTGTAGCG 59.619 55.000 8.91 0.00 45.83 4.26
536 538 2.894765 TCCCGATCACAGAAACTACACA 59.105 45.455 0.00 0.00 0.00 3.72
541 543 5.744345 CCGATCACAGAAACTACACATAGTC 59.256 44.000 0.00 0.00 41.00 2.59
542 544 6.404844 CCGATCACAGAAACTACACATAGTCT 60.405 42.308 0.00 0.00 41.00 3.24
543 545 6.689241 CGATCACAGAAACTACACATAGTCTC 59.311 42.308 0.00 0.00 41.00 3.36
544 546 7.414651 CGATCACAGAAACTACACATAGTCTCT 60.415 40.741 0.00 0.00 38.98 3.10
547 549 5.105752 CAGAAACTACACATAGTCTCTGCC 58.894 45.833 5.17 0.00 45.22 4.85
548 550 4.772624 AGAAACTACACATAGTCTCTGCCA 59.227 41.667 0.00 0.00 37.35 4.92
549 551 4.457834 AACTACACATAGTCTCTGCCAC 57.542 45.455 0.00 0.00 41.00 5.01
550 552 2.761208 ACTACACATAGTCTCTGCCACC 59.239 50.000 0.00 0.00 36.97 4.61
551 553 0.905357 ACACATAGTCTCTGCCACCC 59.095 55.000 0.00 0.00 0.00 4.61
552 554 0.179000 CACATAGTCTCTGCCACCCC 59.821 60.000 0.00 0.00 0.00 4.95
553 555 1.330655 ACATAGTCTCTGCCACCCCG 61.331 60.000 0.00 0.00 0.00 5.73
554 556 1.001760 ATAGTCTCTGCCACCCCGT 59.998 57.895 0.00 0.00 0.00 5.28
555 557 1.043673 ATAGTCTCTGCCACCCCGTC 61.044 60.000 0.00 0.00 0.00 4.79
556 558 2.151307 TAGTCTCTGCCACCCCGTCT 62.151 60.000 0.00 0.00 0.00 4.18
557 559 2.680352 TCTCTGCCACCCCGTCTC 60.680 66.667 0.00 0.00 0.00 3.36
558 560 2.997315 CTCTGCCACCCCGTCTCA 60.997 66.667 0.00 0.00 0.00 3.27
559 561 2.284625 TCTGCCACCCCGTCTCAT 60.285 61.111 0.00 0.00 0.00 2.90
560 562 2.187946 CTGCCACCCCGTCTCATC 59.812 66.667 0.00 0.00 0.00 2.92
561 563 3.391665 CTGCCACCCCGTCTCATCC 62.392 68.421 0.00 0.00 0.00 3.51
562 564 4.176752 GCCACCCCGTCTCATCCC 62.177 72.222 0.00 0.00 0.00 3.85
563 565 3.849951 CCACCCCGTCTCATCCCG 61.850 72.222 0.00 0.00 0.00 5.14
564 566 2.758327 CACCCCGTCTCATCCCGA 60.758 66.667 0.00 0.00 0.00 5.14
565 567 2.134287 CACCCCGTCTCATCCCGAT 61.134 63.158 0.00 0.00 0.00 4.18
566 568 1.833049 ACCCCGTCTCATCCCGATC 60.833 63.158 0.00 0.00 0.00 3.69
567 569 1.832608 CCCCGTCTCATCCCGATCA 60.833 63.158 0.00 0.00 0.00 2.92
568 570 1.364171 CCCGTCTCATCCCGATCAC 59.636 63.158 0.00 0.00 0.00 3.06
569 571 1.364171 CCGTCTCATCCCGATCACC 59.636 63.158 0.00 0.00 0.00 4.02
570 572 1.008424 CGTCTCATCCCGATCACCG 60.008 63.158 0.00 0.00 38.18 4.94
584 586 4.621269 ACCGGGATAGGTGCTAGG 57.379 61.111 6.32 0.00 44.07 3.02
585 587 1.837499 ACCGGGATAGGTGCTAGGC 60.837 63.158 6.32 0.00 44.07 3.93
586 588 2.651361 CGGGATAGGTGCTAGGCG 59.349 66.667 0.00 0.00 0.00 5.52
587 589 2.932234 CGGGATAGGTGCTAGGCGG 61.932 68.421 0.00 0.00 0.00 6.13
588 590 2.584391 GGGATAGGTGCTAGGCGGG 61.584 68.421 0.00 0.00 0.00 6.13
589 591 1.533273 GGATAGGTGCTAGGCGGGA 60.533 63.158 0.00 0.00 0.00 5.14
590 592 1.536943 GGATAGGTGCTAGGCGGGAG 61.537 65.000 0.00 0.00 0.00 4.30
591 593 1.534235 ATAGGTGCTAGGCGGGAGG 60.534 63.158 0.00 0.00 0.00 4.30
592 594 2.020100 ATAGGTGCTAGGCGGGAGGA 62.020 60.000 0.00 0.00 0.00 3.71
593 595 2.232892 TAGGTGCTAGGCGGGAGGAA 62.233 60.000 0.00 0.00 0.00 3.36
594 596 2.187163 GTGCTAGGCGGGAGGAAC 59.813 66.667 0.00 0.00 0.00 3.62
595 597 3.081409 TGCTAGGCGGGAGGAACC 61.081 66.667 0.00 0.00 38.08 3.62
596 598 2.764547 GCTAGGCGGGAGGAACCT 60.765 66.667 0.00 0.00 38.98 3.50
597 599 2.368011 GCTAGGCGGGAGGAACCTT 61.368 63.158 0.00 0.00 38.98 3.50
598 600 1.047034 GCTAGGCGGGAGGAACCTTA 61.047 60.000 0.00 0.00 38.98 2.69
599 601 1.718280 CTAGGCGGGAGGAACCTTAT 58.282 55.000 0.00 0.00 38.98 1.73
600 602 2.047830 CTAGGCGGGAGGAACCTTATT 58.952 52.381 0.00 0.00 38.98 1.40
601 603 0.837940 AGGCGGGAGGAACCTTATTC 59.162 55.000 0.00 0.00 38.98 1.75
602 604 0.179026 GGCGGGAGGAACCTTATTCC 60.179 60.000 0.00 0.00 38.98 3.01
603 605 0.544697 GCGGGAGGAACCTTATTCCA 59.455 55.000 8.35 0.00 41.00 3.53
604 606 1.143073 GCGGGAGGAACCTTATTCCAT 59.857 52.381 8.35 0.00 41.00 3.41
605 607 2.810767 GCGGGAGGAACCTTATTCCATC 60.811 54.545 8.35 3.33 41.00 3.51
606 608 2.706190 CGGGAGGAACCTTATTCCATCT 59.294 50.000 8.35 0.00 41.00 2.90
607 609 3.136626 CGGGAGGAACCTTATTCCATCTT 59.863 47.826 8.35 0.00 41.00 2.40
608 610 4.385310 CGGGAGGAACCTTATTCCATCTTT 60.385 45.833 8.35 0.00 41.00 2.52
609 611 5.163237 CGGGAGGAACCTTATTCCATCTTTA 60.163 44.000 8.35 0.00 41.00 1.85
610 612 6.299922 GGGAGGAACCTTATTCCATCTTTAG 58.700 44.000 8.35 0.00 41.00 1.85
611 613 6.101296 GGGAGGAACCTTATTCCATCTTTAGA 59.899 42.308 8.35 0.00 41.00 2.10
612 614 7.220740 GGAGGAACCTTATTCCATCTTTAGAG 58.779 42.308 8.35 0.00 41.00 2.43
613 615 7.071321 GGAGGAACCTTATTCCATCTTTAGAGA 59.929 40.741 8.35 0.00 41.00 3.10
614 616 8.028652 AGGAACCTTATTCCATCTTTAGAGAG 57.971 38.462 8.35 0.00 41.00 3.20
615 617 7.625682 AGGAACCTTATTCCATCTTTAGAGAGT 59.374 37.037 8.35 0.00 41.00 3.24
616 618 7.929245 GGAACCTTATTCCATCTTTAGAGAGTC 59.071 40.741 0.70 0.00 38.45 3.36
617 619 7.045126 ACCTTATTCCATCTTTAGAGAGTCG 57.955 40.000 0.00 0.00 34.85 4.18
618 620 5.923684 CCTTATTCCATCTTTAGAGAGTCGC 59.076 44.000 0.00 0.00 34.85 5.19
619 621 3.802948 TTCCATCTTTAGAGAGTCGCC 57.197 47.619 0.00 0.00 34.85 5.54
620 622 1.676529 TCCATCTTTAGAGAGTCGCCG 59.323 52.381 0.00 0.00 34.85 6.46
621 623 1.482278 CATCTTTAGAGAGTCGCCGC 58.518 55.000 0.00 0.00 34.85 6.53
622 624 0.386113 ATCTTTAGAGAGTCGCCGCC 59.614 55.000 0.00 0.00 34.85 6.13
623 625 0.963856 TCTTTAGAGAGTCGCCGCCA 60.964 55.000 0.00 0.00 0.00 5.69
624 626 0.802607 CTTTAGAGAGTCGCCGCCAC 60.803 60.000 0.00 0.00 0.00 5.01
625 627 2.221906 TTTAGAGAGTCGCCGCCACC 62.222 60.000 0.00 0.00 0.00 4.61
626 628 3.640257 TAGAGAGTCGCCGCCACCT 62.640 63.158 0.00 0.00 0.00 4.00
627 629 4.500116 GAGAGTCGCCGCCACCTC 62.500 72.222 0.00 0.00 0.00 3.85
634 636 4.803426 GCCGCCACCTCGTCTCTG 62.803 72.222 0.00 0.00 0.00 3.35
635 637 3.374402 CCGCCACCTCGTCTCTGT 61.374 66.667 0.00 0.00 0.00 3.41
636 638 2.044555 CCGCCACCTCGTCTCTGTA 61.045 63.158 0.00 0.00 0.00 2.74
637 639 1.592400 CCGCCACCTCGTCTCTGTAA 61.592 60.000 0.00 0.00 0.00 2.41
638 640 0.179161 CGCCACCTCGTCTCTGTAAG 60.179 60.000 0.00 0.00 0.00 2.34
639 641 0.458716 GCCACCTCGTCTCTGTAAGC 60.459 60.000 0.00 0.00 0.00 3.09
640 642 0.888619 CCACCTCGTCTCTGTAAGCA 59.111 55.000 0.00 0.00 0.00 3.91
641 643 1.135257 CCACCTCGTCTCTGTAAGCAG 60.135 57.143 0.00 0.00 43.87 4.24
642 644 1.135257 CACCTCGTCTCTGTAAGCAGG 60.135 57.143 0.00 0.00 42.78 4.85
643 645 1.271982 ACCTCGTCTCTGTAAGCAGGA 60.272 52.381 0.00 0.00 42.78 3.86
644 646 1.133407 CCTCGTCTCTGTAAGCAGGAC 59.867 57.143 0.00 0.00 42.78 3.85
645 647 1.813178 CTCGTCTCTGTAAGCAGGACA 59.187 52.381 12.83 0.00 42.78 4.02
646 648 1.540267 TCGTCTCTGTAAGCAGGACAC 59.460 52.381 12.83 1.70 42.78 3.67
647 649 1.542030 CGTCTCTGTAAGCAGGACACT 59.458 52.381 12.83 0.00 42.78 3.55
662 664 0.600557 ACACTGCTTCTCCTCTCACG 59.399 55.000 0.00 0.00 0.00 4.35
670 672 2.789409 TCTCCTCTCACGTCAGATCA 57.211 50.000 0.00 0.00 0.00 2.92
682 684 5.349543 TCACGTCAGATCATGTGAGAAATTG 59.650 40.000 4.41 0.00 37.38 2.32
685 687 5.220548 CGTCAGATCATGTGAGAAATTGGTC 60.221 44.000 0.00 0.00 0.00 4.02
687 689 5.878669 TCAGATCATGTGAGAAATTGGTCAG 59.121 40.000 0.00 0.00 0.00 3.51
703 705 0.608130 TCAGTTGGTCATACGCAGCT 59.392 50.000 0.00 0.00 0.00 4.24
704 706 1.002366 CAGTTGGTCATACGCAGCTC 58.998 55.000 0.00 0.00 0.00 4.09
705 707 0.898320 AGTTGGTCATACGCAGCTCT 59.102 50.000 0.00 0.00 0.00 4.09
710 713 1.863454 GGTCATACGCAGCTCTTCATG 59.137 52.381 0.00 0.00 0.00 3.07
738 741 2.252260 CGCCTGCAACAACTTCCG 59.748 61.111 0.00 0.00 0.00 4.30
745 748 2.143122 TGCAACAACTTCCGATGAGAC 58.857 47.619 0.00 0.00 0.00 3.36
746 749 2.224281 TGCAACAACTTCCGATGAGACT 60.224 45.455 0.00 0.00 0.00 3.24
748 751 3.120511 GCAACAACTTCCGATGAGACTTC 60.121 47.826 0.00 0.00 0.00 3.01
750 753 3.919216 ACAACTTCCGATGAGACTTCAG 58.081 45.455 0.00 0.00 36.61 3.02
751 754 2.663826 ACTTCCGATGAGACTTCAGC 57.336 50.000 0.00 0.00 36.61 4.26
752 755 1.895798 ACTTCCGATGAGACTTCAGCA 59.104 47.619 0.00 0.00 39.69 4.41
753 756 2.499289 ACTTCCGATGAGACTTCAGCAT 59.501 45.455 0.00 0.00 39.69 3.79
754 757 3.055530 ACTTCCGATGAGACTTCAGCATT 60.056 43.478 0.00 0.00 39.69 3.56
755 758 3.616956 TCCGATGAGACTTCAGCATTT 57.383 42.857 0.00 0.00 39.69 2.32
756 759 4.736126 TCCGATGAGACTTCAGCATTTA 57.264 40.909 0.00 0.00 39.69 1.40
758 761 4.870426 TCCGATGAGACTTCAGCATTTAAC 59.130 41.667 0.00 0.00 39.69 2.01
761 775 5.276114 CGATGAGACTTCAGCATTTAACTCG 60.276 44.000 0.00 0.00 39.69 4.18
765 779 2.806244 ACTTCAGCATTTAACTCGCGTT 59.194 40.909 5.77 0.00 37.15 4.84
775 789 2.172851 AACTCGCGTTGGGAAATGTA 57.827 45.000 5.77 0.00 30.67 2.29
785 799 5.163652 GCGTTGGGAAATGTAAAAGCTCTAT 60.164 40.000 0.00 0.00 0.00 1.98
790 804 6.537301 TGGGAAATGTAAAAGCTCTATACGTG 59.463 38.462 0.00 0.00 0.00 4.49
801 815 3.004839 GCTCTATACGTGCTCCAATGAGA 59.995 47.826 0.00 0.00 41.42 3.27
802 816 4.793071 CTCTATACGTGCTCCAATGAGAG 58.207 47.826 0.00 0.00 41.42 3.20
803 817 4.461198 TCTATACGTGCTCCAATGAGAGA 58.539 43.478 0.00 0.00 41.42 3.10
804 818 2.941453 TACGTGCTCCAATGAGAGAC 57.059 50.000 0.00 0.00 41.42 3.36
805 819 0.247736 ACGTGCTCCAATGAGAGACC 59.752 55.000 0.00 0.00 41.42 3.85
828 842 2.284552 TGGAGCATTTTGGCCCCC 60.285 61.111 0.00 0.00 29.13 5.40
830 844 1.613332 GGAGCATTTTGGCCCCCTT 60.613 57.895 0.00 0.00 0.00 3.95
831 845 1.598517 GAGCATTTTGGCCCCCTTG 59.401 57.895 0.00 0.00 0.00 3.61
843 857 2.354729 CCCTTGGGATTCCACGCA 59.645 61.111 4.80 0.00 43.94 5.24
844 858 1.304052 CCCTTGGGATTCCACGCAA 60.304 57.895 4.80 0.00 43.94 4.85
845 859 1.595093 CCCTTGGGATTCCACGCAAC 61.595 60.000 4.80 0.00 43.94 4.17
846 860 1.595093 CCTTGGGATTCCACGCAACC 61.595 60.000 4.80 0.00 43.94 3.77
847 861 0.893270 CTTGGGATTCCACGCAACCA 60.893 55.000 4.80 0.00 43.94 3.67
848 862 0.251564 TTGGGATTCCACGCAACCAT 60.252 50.000 4.80 0.00 43.94 3.55
849 863 0.251564 TGGGATTCCACGCAACCATT 60.252 50.000 4.80 0.00 38.32 3.16
850 864 1.004862 TGGGATTCCACGCAACCATTA 59.995 47.619 4.80 0.00 38.32 1.90
851 865 2.096248 GGGATTCCACGCAACCATTAA 58.904 47.619 4.80 0.00 0.00 1.40
852 866 2.494073 GGGATTCCACGCAACCATTAAA 59.506 45.455 4.80 0.00 0.00 1.52
853 867 3.507786 GGATTCCACGCAACCATTAAAC 58.492 45.455 0.00 0.00 0.00 2.01
854 868 3.057174 GGATTCCACGCAACCATTAAACA 60.057 43.478 0.00 0.00 0.00 2.83
855 869 3.357166 TTCCACGCAACCATTAAACAC 57.643 42.857 0.00 0.00 0.00 3.32
905 919 7.148407 CCAGGATATTTAAAGGATCGTGTATGC 60.148 40.741 21.84 8.63 34.96 3.14
954 968 4.348168 ACCACAGTTCCTCAGAAGTTACAT 59.652 41.667 0.00 0.00 33.15 2.29
968 982 3.399330 AGTTACATGTTCCACCTCAACG 58.601 45.455 2.30 0.00 0.00 4.10
977 991 1.258445 CCACCTCAACGCTAGTCCCT 61.258 60.000 0.00 0.00 0.00 4.20
980 994 2.431057 CACCTCAACGCTAGTCCCTTAT 59.569 50.000 0.00 0.00 0.00 1.73
1065 6958 4.404640 TCGACAAGGAGAAGAGAAAGGTA 58.595 43.478 0.00 0.00 0.00 3.08
1080 6973 5.625150 AGAAAGGTACTGTTTGCAGAATCT 58.375 37.500 1.30 0.00 45.28 2.40
1099 6992 1.001706 CTGACAAGGACTTCGTCGACA 60.002 52.381 17.16 0.00 32.65 4.35
1253 7146 2.446435 GTGCAAGGGGATGCTTCTTAA 58.554 47.619 0.00 0.00 46.54 1.85
1267 7160 3.701664 CTTCTTAACCCCCTCAATGCTT 58.298 45.455 0.00 0.00 0.00 3.91
1304 7197 3.619233 TCGGCTTAAAGTGAAAGTTGC 57.381 42.857 0.00 0.00 0.00 4.17
1306 7199 2.034053 CGGCTTAAAGTGAAAGTTGCCA 59.966 45.455 0.00 0.00 36.05 4.92
1310 7203 4.267690 GCTTAAAGTGAAAGTTGCCAACAC 59.732 41.667 10.69 0.00 0.00 3.32
1402 7300 6.641169 TTTGCAGTTGTGGATATGTTGTTA 57.359 33.333 0.00 0.00 0.00 2.41
1427 7325 3.143728 ACATTAGGGAACGGACAAACAC 58.856 45.455 0.00 0.00 0.00 3.32
1433 7331 3.449377 AGGGAACGGACAAACACAAATTT 59.551 39.130 0.00 0.00 0.00 1.82
1438 7336 6.036626 GGAACGGACAAACACAAATTTTCATT 59.963 34.615 0.00 0.00 0.00 2.57
1441 7339 7.484975 ACGGACAAACACAAATTTTCATTCTA 58.515 30.769 0.00 0.00 0.00 2.10
1442 7340 8.141268 ACGGACAAACACAAATTTTCATTCTAT 58.859 29.630 0.00 0.00 0.00 1.98
1443 7341 9.619316 CGGACAAACACAAATTTTCATTCTATA 57.381 29.630 0.00 0.00 0.00 1.31
1485 7383 4.383850 TGGAGTTTTTGTCATTGGTGTG 57.616 40.909 0.00 0.00 0.00 3.82
1486 7384 3.123050 GGAGTTTTTGTCATTGGTGTGC 58.877 45.455 0.00 0.00 0.00 4.57
1509 7407 6.318648 TGCCCAAGTTCATAATAACTGATGAC 59.681 38.462 0.00 0.00 39.62 3.06
1512 7410 7.557719 CCCAAGTTCATAATAACTGATGACCTT 59.442 37.037 0.00 0.00 39.62 3.50
1513 7411 8.400947 CCAAGTTCATAATAACTGATGACCTTG 58.599 37.037 12.57 12.57 45.22 3.61
1557 7455 3.445096 GGGTCATGTTTTCCCTGATTGAG 59.555 47.826 0.00 0.00 38.29 3.02
1614 7512 2.206576 AGGTGCTCCAACTCAATTCC 57.793 50.000 7.70 0.00 35.89 3.01
1620 7518 1.885887 CTCCAACTCAATTCCGCCAAA 59.114 47.619 0.00 0.00 0.00 3.28
1623 7521 2.817258 CCAACTCAATTCCGCCAAAGTA 59.183 45.455 0.00 0.00 0.00 2.24
1628 7526 3.013921 TCAATTCCGCCAAAGTATGTCC 58.986 45.455 0.00 0.00 0.00 4.02
1643 7549 2.810870 TGTCCCTCACTCTCTACCTC 57.189 55.000 0.00 0.00 0.00 3.85
1672 7578 7.461107 ACATGACATTGCAAAATACGTACTAC 58.539 34.615 1.71 0.00 0.00 2.73
1725 7685 7.060289 CGATAATAGCTAGTTGCATTGCATTTG 59.940 37.037 12.95 6.47 45.94 2.32
1796 7756 7.391148 TCCTAACTGGACTTTATTTTGATGC 57.609 36.000 0.00 0.00 40.56 3.91
1828 7788 2.604914 CCGAATGCTACAGACATGTGTC 59.395 50.000 1.15 5.01 45.08 3.67
1878 7838 0.107017 CACTTGAGGCCGATCCCAAT 60.107 55.000 0.00 0.00 34.51 3.16
1893 7853 4.270245 TCCCAATTTCAAAGCCATCAAC 57.730 40.909 0.00 0.00 0.00 3.18
1905 7865 2.352388 GCCATCAACGTAAGGCTTGTA 58.648 47.619 10.69 0.00 43.70 2.41
1921 7881 4.580167 GGCTTGTACATGCAAAGGATGATA 59.420 41.667 28.60 0.00 33.64 2.15
1927 7890 4.592942 ACATGCAAAGGATGATACAGTGT 58.407 39.130 0.00 0.00 0.00 3.55
1953 7916 2.699846 TGCTGAAGTTGGGCAAGATTTT 59.300 40.909 0.00 0.00 32.79 1.82
1963 7926 3.009723 GGGCAAGATTTTGTCGATCTCA 58.990 45.455 0.00 0.00 39.84 3.27
1974 7937 5.914898 TTGTCGATCTCATCTTTGGACTA 57.085 39.130 0.00 0.00 0.00 2.59
1980 7943 6.829298 TCGATCTCATCTTTGGACTACTTAGT 59.171 38.462 0.00 0.00 39.71 2.24
1981 7944 6.915300 CGATCTCATCTTTGGACTACTTAGTG 59.085 42.308 0.00 0.00 36.50 2.74
1993 7956 5.046520 GGACTACTTAGTGTTCCACTTGGAT 60.047 44.000 1.74 0.00 42.59 3.41
1996 7959 3.262420 CTTAGTGTTCCACTTGGATCCG 58.738 50.000 7.39 0.00 42.59 4.18
2111 8074 5.799213 CTTACTTCTATCCCCAATGCTAGG 58.201 45.833 0.00 0.00 0.00 3.02
2161 8124 6.881065 TGTGATGCAAGTAGAAGAATTAGCTT 59.119 34.615 0.00 0.00 0.00 3.74
2167 8130 6.454450 GCAAGTAGAAGAATTAGCTTGTCGAC 60.454 42.308 9.11 9.11 35.24 4.20
2168 8131 5.652518 AGTAGAAGAATTAGCTTGTCGACC 58.347 41.667 14.12 0.00 0.00 4.79
2173 8136 5.401531 AGAATTAGCTTGTCGACCACTTA 57.598 39.130 14.12 1.97 0.00 2.24
2218 8190 3.089284 GAGTTGAATCCCAAATCCGGTT 58.911 45.455 0.00 0.00 42.28 4.44
2277 8249 0.461548 TGGTGACAGATGATCTCCGC 59.538 55.000 0.00 0.00 33.28 5.54
2281 8253 1.000938 TGACAGATGATCTCCGCATCG 60.001 52.381 0.00 0.00 45.18 3.84
2301 8273 2.747467 CGGTCCATTCTGCCTGATCAAT 60.747 50.000 0.00 0.00 0.00 2.57
2302 8274 2.621998 GGTCCATTCTGCCTGATCAATG 59.378 50.000 0.00 0.00 0.00 2.82
2311 8283 0.755079 CCTGATCAATGCCCTCGAGA 59.245 55.000 15.71 0.00 0.00 4.04
2314 8286 1.000171 TGATCAATGCCCTCGAGATCG 60.000 52.381 15.71 1.59 38.28 3.69
2317 8289 0.179100 CAATGCCCTCGAGATCGTGT 60.179 55.000 15.71 0.00 40.80 4.49
2334 8306 0.184692 TGTGTGCATCCAAGGTTCCA 59.815 50.000 0.00 0.00 0.00 3.53
2382 8354 0.744281 CGCTCAACAAAACCCAGGTT 59.256 50.000 0.00 0.00 40.45 3.50
2410 8385 5.047164 ACTTGCCAATAAACAGCATCATCAA 60.047 36.000 0.00 0.00 0.00 2.57
2460 8435 7.405292 TCATTGGTTTTCTCATCTCATTACCT 58.595 34.615 0.00 0.00 0.00 3.08
2533 8508 1.807886 CAGCTTGCTCATGCCTTCC 59.192 57.895 4.42 0.00 38.71 3.46
2621 8835 7.872993 CCGGAGATGCAGAAATATTACTAGAAA 59.127 37.037 0.00 0.00 0.00 2.52
2677 8891 5.752955 TGCAAAACTGATTCTTTAGTTTGCC 59.247 36.000 13.74 4.21 44.02 4.52
2709 8923 0.882042 GCATCATGTCCGAGGCGAAT 60.882 55.000 0.00 0.00 32.46 3.34
2712 8926 3.676049 GCATCATGTCCGAGGCGAATATA 60.676 47.826 0.00 0.00 32.46 0.86
2730 8944 7.254829 GCGAATATATCCTACTCATCGAGCTTA 60.255 40.741 3.92 0.00 32.04 3.09
2776 8991 4.398988 TCCTTTCTAATGTTAGACCGCGTA 59.601 41.667 4.92 0.00 39.36 4.42
2786 9001 4.336153 TGTTAGACCGCGTATAGATCAACA 59.664 41.667 4.92 1.52 0.00 3.33
2790 9005 4.110482 GACCGCGTATAGATCAACAAACT 58.890 43.478 4.92 0.00 0.00 2.66
2793 9008 5.163581 ACCGCGTATAGATCAACAAACTAGT 60.164 40.000 4.92 0.00 0.00 2.57
2794 9009 5.398711 CCGCGTATAGATCAACAAACTAGTC 59.601 44.000 4.92 0.00 0.00 2.59
2796 9011 6.075519 CGCGTATAGATCAACAAACTAGTCAC 60.076 42.308 0.00 0.00 0.00 3.67
2797 9012 6.198591 GCGTATAGATCAACAAACTAGTCACC 59.801 42.308 0.00 0.00 0.00 4.02
2798 9013 7.255569 CGTATAGATCAACAAACTAGTCACCA 58.744 38.462 0.00 0.00 0.00 4.17
2799 9014 7.921214 CGTATAGATCAACAAACTAGTCACCAT 59.079 37.037 0.00 0.00 0.00 3.55
2800 9015 9.601217 GTATAGATCAACAAACTAGTCACCATT 57.399 33.333 0.00 0.00 0.00 3.16
2805 9020 8.691661 ATCAACAAACTAGTCACCATTAAACT 57.308 30.769 0.00 0.00 0.00 2.66
2813 9028 7.295952 CTAGTCACCATTAAACTAGTGCTTG 57.704 40.000 0.00 0.00 38.33 4.01
2814 9029 4.455877 AGTCACCATTAAACTAGTGCTTGC 59.544 41.667 0.00 0.00 0.00 4.01
2816 9031 4.824537 TCACCATTAAACTAGTGCTTGCAA 59.175 37.500 0.00 0.00 0.00 4.08
2818 9033 5.402270 CACCATTAAACTAGTGCTTGCAAAC 59.598 40.000 0.00 0.00 0.00 2.93
2819 9034 5.301805 ACCATTAAACTAGTGCTTGCAAACT 59.698 36.000 8.74 8.74 0.00 2.66
2820 9035 6.488683 ACCATTAAACTAGTGCTTGCAAACTA 59.511 34.615 9.96 9.96 0.00 2.24
2821 9036 6.801862 CCATTAAACTAGTGCTTGCAAACTAC 59.198 38.462 6.86 3.62 0.00 2.73
2822 9037 7.308589 CCATTAAACTAGTGCTTGCAAACTACT 60.309 37.037 6.86 10.05 0.00 2.57
2823 9038 5.674933 AAACTAGTGCTTGCAAACTACTC 57.325 39.130 11.72 0.00 0.00 2.59
2824 9039 3.665190 ACTAGTGCTTGCAAACTACTCC 58.335 45.455 11.72 0.00 0.00 3.85
2825 9040 2.938956 AGTGCTTGCAAACTACTCCT 57.061 45.000 0.00 0.00 0.00 3.69
2826 9041 2.498167 AGTGCTTGCAAACTACTCCTG 58.502 47.619 0.00 0.00 0.00 3.86
2827 9042 2.104792 AGTGCTTGCAAACTACTCCTGA 59.895 45.455 0.00 0.00 0.00 3.86
2828 9043 2.481952 GTGCTTGCAAACTACTCCTGAG 59.518 50.000 0.00 0.00 0.00 3.35
2829 9044 2.104792 TGCTTGCAAACTACTCCTGAGT 59.895 45.455 0.00 5.01 45.02 3.41
2830 9045 3.142174 GCTTGCAAACTACTCCTGAGTT 58.858 45.455 4.94 0.00 42.54 3.01
2831 9046 3.058639 GCTTGCAAACTACTCCTGAGTTG 60.059 47.826 4.94 6.17 42.54 3.16
2832 9047 3.838244 TGCAAACTACTCCTGAGTTGT 57.162 42.857 4.94 6.84 46.38 3.32
2833 9048 3.466836 TGCAAACTACTCCTGAGTTGTG 58.533 45.455 13.68 5.41 44.33 3.33
2834 9049 3.133901 TGCAAACTACTCCTGAGTTGTGA 59.866 43.478 13.68 0.00 44.33 3.58
2835 9050 3.495001 GCAAACTACTCCTGAGTTGTGAC 59.505 47.826 13.68 4.82 44.33 3.67
2836 9051 4.740934 GCAAACTACTCCTGAGTTGTGACT 60.741 45.833 13.68 0.00 44.33 3.41
2837 9052 5.509163 GCAAACTACTCCTGAGTTGTGACTA 60.509 44.000 13.68 0.00 44.33 2.59
2838 9053 5.968528 AACTACTCCTGAGTTGTGACTAG 57.031 43.478 13.68 3.01 44.33 2.57
2839 9054 3.759618 ACTACTCCTGAGTTGTGACTAGC 59.240 47.826 12.48 0.00 43.67 3.42
2840 9055 1.542030 ACTCCTGAGTTGTGACTAGCG 59.458 52.381 0.00 0.00 38.83 4.26
2849 9064 4.134563 AGTTGTGACTAGCGACCAAATTT 58.865 39.130 0.00 0.00 33.32 1.82
2916 9131 2.977405 GCTGTCTGTTAGCTTGGTTG 57.023 50.000 0.00 0.00 38.14 3.77
2963 9178 3.996480 ACTCACCACTTCTGTTTAGCTC 58.004 45.455 0.00 0.00 0.00 4.09
3069 11269 0.900647 AGCAAGCCCTGACGACTAGT 60.901 55.000 0.00 0.00 0.00 2.57
3214 11425 1.451927 GTCATGGGATGCAAGGCGA 60.452 57.895 0.00 0.00 0.00 5.54
3236 11447 4.728102 CACACCGGTCGCGGCTTA 62.728 66.667 11.94 0.00 0.00 3.09
3267 11478 3.787001 CGAGGCCCTCCACCTTCC 61.787 72.222 4.85 0.00 37.77 3.46
3302 11513 1.374758 GAGGCTGAACACCCTGACG 60.375 63.158 0.00 0.00 0.00 4.35
3308 11519 0.757561 TGAACACCCTGACGAGGTCA 60.758 55.000 0.00 0.00 40.50 4.02
3320 11537 3.580100 GAGGTCAGCAGCGCAGTCA 62.580 63.158 11.47 0.00 0.00 3.41
3344 11561 0.179094 CATACCCTTCGCTGGCGTAA 60.179 55.000 14.55 7.16 40.74 3.18
3388 11605 2.743928 GTGCTCCCTTGTCGGCAG 60.744 66.667 0.00 0.00 35.29 4.85
3390 11607 2.293318 TGCTCCCTTGTCGGCAGAT 61.293 57.895 0.00 0.00 0.00 2.90
3396 11613 0.596083 CCTTGTCGGCAGATAGAGCG 60.596 60.000 0.00 0.00 0.00 5.03
3397 11614 0.382158 CTTGTCGGCAGATAGAGCGA 59.618 55.000 0.00 0.00 0.00 4.93
3425 11642 2.264480 CCCCGATGAACTGCACGA 59.736 61.111 0.00 0.00 0.00 4.35
3460 11677 1.000771 TGTCTCCCTCCACTCCTCG 60.001 63.158 0.00 0.00 0.00 4.63
3466 11683 2.829003 CTCCACTCCTCGCCGCTA 60.829 66.667 0.00 0.00 0.00 4.26
3475 11692 2.745100 TCGCCGCTAGTGTCGAGT 60.745 61.111 5.16 0.00 0.00 4.18
3478 11695 1.798735 GCCGCTAGTGTCGAGTACA 59.201 57.895 1.99 0.00 35.06 2.90
3523 11740 0.249398 GATAACCGTGTGTGGCCTCT 59.751 55.000 3.32 0.00 0.00 3.69
3527 11744 2.260869 CCGTGTGTGGCCTCTTTGG 61.261 63.158 3.32 0.00 39.35 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 19 2.476854 GCTAGATGCTGCTTTTGTTCCG 60.477 50.000 0.00 0.00 38.95 4.30
259 261 2.715737 TTTTGCAGGTGTTATTCCGC 57.284 45.000 0.00 0.00 0.00 5.54
536 538 1.001760 ACGGGGTGGCAGAGACTAT 59.998 57.895 0.00 0.00 0.00 2.12
541 543 2.303549 GATGAGACGGGGTGGCAGAG 62.304 65.000 0.00 0.00 0.00 3.35
542 544 2.284625 ATGAGACGGGGTGGCAGA 60.285 61.111 0.00 0.00 0.00 4.26
543 545 2.187946 GATGAGACGGGGTGGCAG 59.812 66.667 0.00 0.00 0.00 4.85
544 546 3.399181 GGATGAGACGGGGTGGCA 61.399 66.667 0.00 0.00 0.00 4.92
545 547 4.176752 GGGATGAGACGGGGTGGC 62.177 72.222 0.00 0.00 0.00 5.01
546 548 3.849951 CGGGATGAGACGGGGTGG 61.850 72.222 0.00 0.00 0.00 4.61
547 549 2.088674 GATCGGGATGAGACGGGGTG 62.089 65.000 0.00 0.00 0.00 4.61
548 550 1.833049 GATCGGGATGAGACGGGGT 60.833 63.158 0.00 0.00 0.00 4.95
549 551 1.832608 TGATCGGGATGAGACGGGG 60.833 63.158 0.00 0.00 0.00 5.73
550 552 1.364171 GTGATCGGGATGAGACGGG 59.636 63.158 0.00 0.00 0.00 5.28
551 553 1.364171 GGTGATCGGGATGAGACGG 59.636 63.158 0.00 0.00 0.00 4.79
552 554 1.008424 CGGTGATCGGGATGAGACG 60.008 63.158 0.00 0.00 34.75 4.18
567 569 1.837499 GCCTAGCACCTATCCCGGT 60.837 63.158 0.00 0.00 37.93 5.28
568 570 2.932234 CGCCTAGCACCTATCCCGG 61.932 68.421 0.00 0.00 0.00 5.73
569 571 2.651361 CGCCTAGCACCTATCCCG 59.349 66.667 0.00 0.00 0.00 5.14
570 572 2.584391 CCCGCCTAGCACCTATCCC 61.584 68.421 0.00 0.00 0.00 3.85
571 573 1.533273 TCCCGCCTAGCACCTATCC 60.533 63.158 0.00 0.00 0.00 2.59
572 574 1.536943 CCTCCCGCCTAGCACCTATC 61.537 65.000 0.00 0.00 0.00 2.08
573 575 1.534235 CCTCCCGCCTAGCACCTAT 60.534 63.158 0.00 0.00 0.00 2.57
574 576 2.123425 CCTCCCGCCTAGCACCTA 60.123 66.667 0.00 0.00 0.00 3.08
575 577 3.618855 TTCCTCCCGCCTAGCACCT 62.619 63.158 0.00 0.00 0.00 4.00
576 578 3.081409 TTCCTCCCGCCTAGCACC 61.081 66.667 0.00 0.00 0.00 5.01
577 579 2.187163 GTTCCTCCCGCCTAGCAC 59.813 66.667 0.00 0.00 0.00 4.40
578 580 3.081409 GGTTCCTCCCGCCTAGCA 61.081 66.667 0.00 0.00 0.00 3.49
579 581 1.047034 TAAGGTTCCTCCCGCCTAGC 61.047 60.000 0.00 0.00 36.75 3.42
580 582 1.718280 ATAAGGTTCCTCCCGCCTAG 58.282 55.000 0.00 0.00 36.75 3.02
581 583 2.044758 GAATAAGGTTCCTCCCGCCTA 58.955 52.381 0.00 0.00 36.75 3.93
582 584 0.837940 GAATAAGGTTCCTCCCGCCT 59.162 55.000 0.00 0.00 36.75 5.52
583 585 0.179026 GGAATAAGGTTCCTCCCGCC 60.179 60.000 0.00 0.00 35.73 6.13
584 586 0.544697 TGGAATAAGGTTCCTCCCGC 59.455 55.000 8.17 0.00 39.31 6.13
585 587 2.706190 AGATGGAATAAGGTTCCTCCCG 59.294 50.000 8.17 0.00 39.31 5.14
586 588 4.797912 AAGATGGAATAAGGTTCCTCCC 57.202 45.455 8.17 0.00 39.31 4.30
587 589 7.071321 TCTCTAAAGATGGAATAAGGTTCCTCC 59.929 40.741 8.17 0.97 39.31 4.30
588 590 8.024145 TCTCTAAAGATGGAATAAGGTTCCTC 57.976 38.462 8.17 4.03 39.31 3.71
589 591 7.625682 ACTCTCTAAAGATGGAATAAGGTTCCT 59.374 37.037 8.17 0.00 39.31 3.36
590 592 7.797062 ACTCTCTAAAGATGGAATAAGGTTCC 58.203 38.462 0.00 0.00 39.03 3.62
591 593 7.650104 CGACTCTCTAAAGATGGAATAAGGTTC 59.350 40.741 0.00 0.00 0.00 3.62
592 594 7.493367 CGACTCTCTAAAGATGGAATAAGGTT 58.507 38.462 0.00 0.00 0.00 3.50
593 595 6.461788 GCGACTCTCTAAAGATGGAATAAGGT 60.462 42.308 0.00 0.00 0.00 3.50
594 596 5.923684 GCGACTCTCTAAAGATGGAATAAGG 59.076 44.000 0.00 0.00 0.00 2.69
595 597 5.923684 GGCGACTCTCTAAAGATGGAATAAG 59.076 44.000 0.00 0.00 0.00 1.73
596 598 5.507482 CGGCGACTCTCTAAAGATGGAATAA 60.507 44.000 0.00 0.00 0.00 1.40
597 599 4.023107 CGGCGACTCTCTAAAGATGGAATA 60.023 45.833 0.00 0.00 0.00 1.75
598 600 3.243569 CGGCGACTCTCTAAAGATGGAAT 60.244 47.826 0.00 0.00 0.00 3.01
599 601 2.099263 CGGCGACTCTCTAAAGATGGAA 59.901 50.000 0.00 0.00 0.00 3.53
600 602 1.676529 CGGCGACTCTCTAAAGATGGA 59.323 52.381 0.00 0.00 0.00 3.41
601 603 1.866063 GCGGCGACTCTCTAAAGATGG 60.866 57.143 12.98 0.00 0.00 3.51
602 604 1.482278 GCGGCGACTCTCTAAAGATG 58.518 55.000 12.98 0.00 0.00 2.90
603 605 0.386113 GGCGGCGACTCTCTAAAGAT 59.614 55.000 12.98 0.00 0.00 2.40
604 606 0.963856 TGGCGGCGACTCTCTAAAGA 60.964 55.000 16.45 0.00 0.00 2.52
605 607 0.802607 GTGGCGGCGACTCTCTAAAG 60.803 60.000 16.45 0.00 0.00 1.85
606 608 1.214589 GTGGCGGCGACTCTCTAAA 59.785 57.895 16.45 0.00 0.00 1.85
607 609 2.707849 GGTGGCGGCGACTCTCTAA 61.708 63.158 16.45 0.00 0.00 2.10
608 610 3.138798 GGTGGCGGCGACTCTCTA 61.139 66.667 16.45 0.00 0.00 2.43
610 612 4.500116 GAGGTGGCGGCGACTCTC 62.500 72.222 16.45 17.21 0.00 3.20
617 619 4.803426 CAGAGACGAGGTGGCGGC 62.803 72.222 0.00 0.00 40.32 6.53
618 620 1.592400 TTACAGAGACGAGGTGGCGG 61.592 60.000 0.00 0.00 35.12 6.13
619 621 0.179161 CTTACAGAGACGAGGTGGCG 60.179 60.000 0.00 0.00 37.29 5.69
620 622 0.458716 GCTTACAGAGACGAGGTGGC 60.459 60.000 0.00 0.00 0.00 5.01
621 623 0.888619 TGCTTACAGAGACGAGGTGG 59.111 55.000 0.00 0.00 0.00 4.61
641 643 1.067213 GTGAGAGGAGAAGCAGTGTCC 60.067 57.143 0.00 0.00 40.14 4.02
642 644 1.402194 CGTGAGAGGAGAAGCAGTGTC 60.402 57.143 0.00 0.00 0.00 3.67
643 645 0.600557 CGTGAGAGGAGAAGCAGTGT 59.399 55.000 0.00 0.00 0.00 3.55
644 646 0.600557 ACGTGAGAGGAGAAGCAGTG 59.399 55.000 0.00 0.00 0.00 3.66
645 647 0.885196 GACGTGAGAGGAGAAGCAGT 59.115 55.000 0.00 0.00 0.00 4.40
646 648 0.884514 TGACGTGAGAGGAGAAGCAG 59.115 55.000 0.00 0.00 0.00 4.24
647 649 0.884514 CTGACGTGAGAGGAGAAGCA 59.115 55.000 0.00 0.00 0.00 3.91
648 650 1.169577 TCTGACGTGAGAGGAGAAGC 58.830 55.000 0.00 0.00 0.00 3.86
649 651 3.013219 TGATCTGACGTGAGAGGAGAAG 58.987 50.000 11.19 0.00 0.00 2.85
662 664 5.645067 TGACCAATTTCTCACATGATCTGAC 59.355 40.000 0.00 0.00 0.00 3.51
670 672 4.473444 ACCAACTGACCAATTTCTCACAT 58.527 39.130 0.00 0.00 0.00 3.21
682 684 1.359848 CTGCGTATGACCAACTGACC 58.640 55.000 0.00 0.00 0.00 4.02
685 687 1.002366 GAGCTGCGTATGACCAACTG 58.998 55.000 0.00 0.00 0.00 3.16
687 689 1.661112 GAAGAGCTGCGTATGACCAAC 59.339 52.381 0.00 0.00 0.00 3.77
738 741 5.501574 GCGAGTTAAATGCTGAAGTCTCATC 60.502 44.000 0.00 0.00 0.00 2.92
758 761 3.488489 CTTTTACATTTCCCAACGCGAG 58.512 45.455 15.93 4.40 0.00 5.03
761 775 3.057526 AGAGCTTTTACATTTCCCAACGC 60.058 43.478 0.00 0.00 0.00 4.84
765 779 6.537301 CACGTATAGAGCTTTTACATTTCCCA 59.463 38.462 0.00 0.00 0.00 4.37
775 789 3.887621 TGGAGCACGTATAGAGCTTTT 57.112 42.857 0.00 0.00 46.66 2.27
785 799 1.476891 GGTCTCTCATTGGAGCACGTA 59.523 52.381 0.00 0.00 41.13 3.57
790 804 0.467804 GGGAGGTCTCTCATTGGAGC 59.532 60.000 0.00 0.00 41.69 4.70
828 842 0.893270 TGGTTGCGTGGAATCCCAAG 60.893 55.000 0.00 0.00 45.59 3.61
830 844 0.251564 AATGGTTGCGTGGAATCCCA 60.252 50.000 0.00 0.00 40.95 4.37
831 845 1.757682 TAATGGTTGCGTGGAATCCC 58.242 50.000 0.00 0.00 0.00 3.85
833 847 3.917985 GTGTTTAATGGTTGCGTGGAATC 59.082 43.478 0.00 0.00 0.00 2.52
834 848 3.572255 AGTGTTTAATGGTTGCGTGGAAT 59.428 39.130 0.00 0.00 0.00 3.01
836 850 2.292016 CAGTGTTTAATGGTTGCGTGGA 59.708 45.455 0.00 0.00 0.00 4.02
839 853 1.000717 GGCAGTGTTTAATGGTTGCGT 60.001 47.619 0.00 0.00 32.59 5.24
840 854 1.696988 GGCAGTGTTTAATGGTTGCG 58.303 50.000 0.00 0.00 32.59 4.85
841 855 1.000717 ACGGCAGTGTTTAATGGTTGC 60.001 47.619 0.00 0.00 0.00 4.17
842 856 3.363341 AACGGCAGTGTTTAATGGTTG 57.637 42.857 0.00 0.00 0.00 3.77
843 857 3.253921 GGTAACGGCAGTGTTTAATGGTT 59.746 43.478 0.00 0.00 33.32 3.67
844 858 2.815503 GGTAACGGCAGTGTTTAATGGT 59.184 45.455 0.00 0.00 33.32 3.55
845 859 2.814919 TGGTAACGGCAGTGTTTAATGG 59.185 45.455 0.00 0.00 42.51 3.16
846 860 4.491234 TTGGTAACGGCAGTGTTTAATG 57.509 40.909 0.00 0.00 42.51 1.90
847 861 5.941647 AGTATTGGTAACGGCAGTGTTTAAT 59.058 36.000 0.00 0.00 42.51 1.40
848 862 5.179742 CAGTATTGGTAACGGCAGTGTTTAA 59.820 40.000 0.00 0.00 42.51 1.52
849 863 4.691685 CAGTATTGGTAACGGCAGTGTTTA 59.308 41.667 0.00 0.00 42.51 2.01
850 864 3.500680 CAGTATTGGTAACGGCAGTGTTT 59.499 43.478 0.00 0.00 42.51 2.83
851 865 3.071479 CAGTATTGGTAACGGCAGTGTT 58.929 45.455 0.00 0.00 42.51 3.32
852 866 2.614481 CCAGTATTGGTAACGGCAGTGT 60.614 50.000 0.00 0.00 39.79 3.55
853 867 2.006888 CCAGTATTGGTAACGGCAGTG 58.993 52.381 0.00 0.00 39.79 3.66
854 868 1.065709 CCCAGTATTGGTAACGGCAGT 60.066 52.381 3.28 0.00 43.40 4.40
855 869 1.663695 CCCAGTATTGGTAACGGCAG 58.336 55.000 3.28 0.00 43.40 4.85
879 893 7.148407 GCATACACGATCCTTTAAATATCCTGG 60.148 40.741 0.00 0.00 0.00 4.45
880 894 7.387673 TGCATACACGATCCTTTAAATATCCTG 59.612 37.037 0.00 0.00 0.00 3.86
905 919 1.423395 GAAGACGAGCTGAGGTGTTG 58.577 55.000 0.00 0.00 0.00 3.33
954 968 1.000506 GACTAGCGTTGAGGTGGAACA 59.999 52.381 0.00 0.00 39.98 3.18
968 982 1.409427 ACACGCTCATAAGGGACTAGC 59.591 52.381 0.00 0.00 38.49 3.42
977 991 1.067060 CCGATGAGGACACGCTCATAA 59.933 52.381 3.62 0.00 45.00 1.90
980 994 2.885113 CCGATGAGGACACGCTCA 59.115 61.111 0.00 0.00 45.00 4.26
1065 6958 3.567164 CCTTGTCAGATTCTGCAAACAGT 59.433 43.478 17.94 0.00 44.77 3.55
1099 6992 1.836802 GGTGAGGAAGCTGAAGAGGAT 59.163 52.381 0.00 0.00 0.00 3.24
1223 7116 2.644992 CCTTGCACGCCTTGGTTC 59.355 61.111 0.00 0.00 0.00 3.62
1253 7146 1.000396 GCTGAAGCATTGAGGGGGT 60.000 57.895 0.00 0.00 41.59 4.95
1275 7168 3.755905 TCACTTTAAGCCGATTGCAATGA 59.244 39.130 18.59 1.39 44.83 2.57
1304 7197 4.816385 AGCGATACATAGGATTTGTGTTGG 59.184 41.667 0.00 0.00 0.00 3.77
1306 7199 4.273480 GCAGCGATACATAGGATTTGTGTT 59.727 41.667 0.00 0.00 0.00 3.32
1310 7203 5.422666 TTTGCAGCGATACATAGGATTTG 57.577 39.130 0.00 0.00 0.00 2.32
1393 7291 7.765360 CCGTTCCCTAATGTACTTAACAACATA 59.235 37.037 0.00 0.00 42.70 2.29
1402 7300 4.895668 TTGTCCGTTCCCTAATGTACTT 57.104 40.909 0.00 0.00 0.00 2.24
1411 7309 2.131776 TTTGTGTTTGTCCGTTCCCT 57.868 45.000 0.00 0.00 0.00 4.20
1417 7315 6.826893 AGAATGAAAATTTGTGTTTGTCCG 57.173 33.333 0.00 0.00 0.00 4.79
1443 7341 9.471702 ACTCCAATCTTAATGATGTCTGAAAAT 57.528 29.630 0.00 0.00 35.21 1.82
1444 7342 8.868522 ACTCCAATCTTAATGATGTCTGAAAA 57.131 30.769 0.00 0.00 35.21 2.29
1447 7345 8.868522 AAAACTCCAATCTTAATGATGTCTGA 57.131 30.769 0.00 0.00 35.21 3.27
1449 7347 9.082313 ACAAAAACTCCAATCTTAATGATGTCT 57.918 29.630 0.00 0.00 35.21 3.41
1451 7349 8.859090 TGACAAAAACTCCAATCTTAATGATGT 58.141 29.630 0.00 0.00 35.21 3.06
1452 7350 9.865321 ATGACAAAAACTCCAATCTTAATGATG 57.135 29.630 0.00 0.00 35.21 3.07
1454 7352 9.695526 CAATGACAAAAACTCCAATCTTAATGA 57.304 29.630 0.00 0.00 0.00 2.57
1457 7355 7.925483 CACCAATGACAAAAACTCCAATCTTAA 59.075 33.333 0.00 0.00 0.00 1.85
1458 7356 7.069331 ACACCAATGACAAAAACTCCAATCTTA 59.931 33.333 0.00 0.00 0.00 2.10
1459 7357 6.127083 ACACCAATGACAAAAACTCCAATCTT 60.127 34.615 0.00 0.00 0.00 2.40
1462 7360 5.358922 CACACCAATGACAAAAACTCCAAT 58.641 37.500 0.00 0.00 0.00 3.16
1463 7361 4.753233 CACACCAATGACAAAAACTCCAA 58.247 39.130 0.00 0.00 0.00 3.53
1485 7383 6.238759 GGTCATCAGTTATTATGAACTTGGGC 60.239 42.308 0.00 0.00 37.57 5.36
1486 7384 7.056635 AGGTCATCAGTTATTATGAACTTGGG 58.943 38.462 0.00 0.00 45.67 4.12
1497 7395 6.006449 AGCAACTTCAAGGTCATCAGTTATT 58.994 36.000 0.00 0.00 0.00 1.40
1509 7407 1.538950 GAAGCAGGAGCAACTTCAAGG 59.461 52.381 0.00 0.00 45.49 3.61
1512 7410 0.473755 TGGAAGCAGGAGCAACTTCA 59.526 50.000 0.00 0.00 45.49 3.02
1513 7411 0.877743 GTGGAAGCAGGAGCAACTTC 59.122 55.000 0.00 0.00 45.49 3.01
1557 7455 6.996282 TCTCTTTTTCGGGTATCCCATATTTC 59.004 38.462 5.64 0.00 45.83 2.17
1572 7470 4.569943 TCTCCTGGACATTCTCTTTTTCG 58.430 43.478 0.00 0.00 0.00 3.46
1614 7512 1.066143 AGTGAGGGACATACTTTGGCG 60.066 52.381 0.00 0.00 32.19 5.69
1620 7518 3.789274 AGGTAGAGAGTGAGGGACATACT 59.211 47.826 0.00 0.00 0.00 2.12
1623 7521 2.856231 AGAGGTAGAGAGTGAGGGACAT 59.144 50.000 0.00 0.00 0.00 3.06
1628 7526 3.691575 TGTTCAGAGGTAGAGAGTGAGG 58.308 50.000 0.00 0.00 0.00 3.86
1643 7549 5.858049 ACGTATTTTGCAATGTCATGTTCAG 59.142 36.000 0.00 0.00 0.00 3.02
1693 7607 6.879276 TGCAACTAGCTATTATCGACTAGT 57.121 37.500 0.00 0.00 45.49 2.57
1700 7614 7.864379 ACAAATGCAATGCAACTAGCTATTATC 59.136 33.333 13.45 0.00 43.62 1.75
1725 7685 6.874134 TCCTAAGCAAACTAGTCATCTGAAAC 59.126 38.462 0.00 0.00 0.00 2.78
1796 7756 2.320587 GCATTCGGCGGGATAGCAG 61.321 63.158 7.21 0.00 39.27 4.24
1828 7788 3.181483 GCCAACATATTTTCAGGGAGCAG 60.181 47.826 0.00 0.00 0.00 4.24
1878 7838 3.305064 GCCTTACGTTGATGGCTTTGAAA 60.305 43.478 7.75 0.00 41.92 2.69
1893 7853 3.426159 CCTTTGCATGTACAAGCCTTACG 60.426 47.826 19.55 4.68 0.00 3.18
1905 7865 4.592942 ACACTGTATCATCCTTTGCATGT 58.407 39.130 0.00 0.00 0.00 3.21
1921 7881 4.943705 CCCAACTTCAGCATATAACACTGT 59.056 41.667 0.00 0.00 33.12 3.55
1927 7890 4.854173 TCTTGCCCAACTTCAGCATATAA 58.146 39.130 0.00 0.00 36.20 0.98
1953 7916 4.950475 AGTAGTCCAAAGATGAGATCGACA 59.050 41.667 0.00 0.00 0.00 4.35
1963 7926 6.681729 TGGAACACTAAGTAGTCCAAAGAT 57.318 37.500 0.00 0.00 33.46 2.40
2111 8074 0.601046 GCTGCAACCAAAGAAAGGCC 60.601 55.000 0.00 0.00 0.00 5.19
2161 8124 4.442893 GGATCCAATCATAAGTGGTCGACA 60.443 45.833 18.91 0.27 41.48 4.35
2167 8130 4.999950 GCTAGTGGATCCAATCATAAGTGG 59.000 45.833 19.79 0.00 42.12 4.00
2168 8131 5.699915 CAGCTAGTGGATCCAATCATAAGTG 59.300 44.000 19.79 7.71 0.00 3.16
2173 8136 4.785346 AACAGCTAGTGGATCCAATCAT 57.215 40.909 19.79 6.61 0.00 2.45
2218 8190 5.954752 CACCCTTGATATAGGCTCTATCAGA 59.045 44.000 18.41 11.27 37.03 3.27
2276 8248 1.153086 AGGCAGAATGGACCGATGC 60.153 57.895 2.37 2.37 35.86 3.91
2277 8249 0.178767 TCAGGCAGAATGGACCGATG 59.821 55.000 0.00 0.00 35.86 3.84
2281 8253 2.425143 TTGATCAGGCAGAATGGACC 57.575 50.000 0.00 0.00 35.86 4.46
2283 8255 2.304092 GCATTGATCAGGCAGAATGGA 58.696 47.619 14.47 0.00 35.86 3.41
2301 8273 1.977009 ACACACGATCTCGAGGGCA 60.977 57.895 13.56 0.00 43.02 5.36
2302 8274 1.517257 CACACACGATCTCGAGGGC 60.517 63.158 13.56 3.94 43.02 5.19
2311 8283 0.036732 ACCTTGGATGCACACACGAT 59.963 50.000 0.00 0.00 0.00 3.73
2314 8286 0.598065 GGAACCTTGGATGCACACAC 59.402 55.000 0.00 0.00 0.00 3.82
2317 8289 1.962807 CTTTGGAACCTTGGATGCACA 59.037 47.619 0.00 0.00 0.00 4.57
2334 8306 3.297134 TTCTCCACAAGCTTGTCCTTT 57.703 42.857 28.97 4.76 39.91 3.11
2382 8354 7.637631 TGATGCTGTTTATTGGCAAGTAATA 57.362 32.000 5.96 0.03 39.46 0.98
2410 8385 8.625786 AGAACATATAAAACGGTGGTAAGTTT 57.374 30.769 0.00 0.00 41.72 2.66
2460 8435 4.318332 CACAAGCTTCAGAACCTGTATCA 58.682 43.478 0.00 0.00 32.61 2.15
2519 8494 2.165167 CTTCTTGGAAGGCATGAGCAA 58.835 47.619 0.00 0.00 44.61 3.91
2533 8508 0.997196 GTAACGCCCGCTACTTCTTG 59.003 55.000 0.00 0.00 0.00 3.02
2573 8548 4.262463 GGGCTTCACATCGATAAGTGGATA 60.262 45.833 14.00 2.57 36.43 2.59
2581 8556 0.673985 CTCCGGGCTTCACATCGATA 59.326 55.000 0.00 0.00 0.00 2.92
2582 8557 1.043116 TCTCCGGGCTTCACATCGAT 61.043 55.000 0.00 0.00 0.00 3.59
2621 8835 9.546428 CAAAGGTAAAACATCAAGAAAGGAAAT 57.454 29.630 0.00 0.00 0.00 2.17
2677 8891 1.068541 CATGATGCTCAATGGATGGCG 60.069 52.381 0.00 0.00 0.00 5.69
2700 8914 5.559225 CGATGAGTAGGATATATTCGCCTCG 60.559 48.000 7.88 0.00 33.28 4.63
2712 8926 7.055667 TCAATTTAAGCTCGATGAGTAGGAT 57.944 36.000 0.00 0.00 31.39 3.24
2762 8977 5.009310 TGTTGATCTATACGCGGTCTAACAT 59.991 40.000 12.47 0.00 0.00 2.71
2763 8978 4.336153 TGTTGATCTATACGCGGTCTAACA 59.664 41.667 12.47 7.89 0.00 2.41
2764 8979 4.852138 TGTTGATCTATACGCGGTCTAAC 58.148 43.478 12.47 5.32 0.00 2.34
2765 8980 5.503662 TTGTTGATCTATACGCGGTCTAA 57.496 39.130 12.47 0.00 0.00 2.10
2766 8981 5.066893 AGTTTGTTGATCTATACGCGGTCTA 59.933 40.000 12.47 0.00 0.00 2.59
2771 8986 5.969435 TGACTAGTTTGTTGATCTATACGCG 59.031 40.000 3.53 3.53 0.00 6.01
2790 9005 5.642063 GCAAGCACTAGTTTAATGGTGACTA 59.358 40.000 0.00 0.00 33.82 2.59
2793 9008 4.393834 TGCAAGCACTAGTTTAATGGTGA 58.606 39.130 0.00 0.00 33.82 4.02
2794 9009 4.764679 TGCAAGCACTAGTTTAATGGTG 57.235 40.909 0.00 0.00 34.99 4.17
2796 9011 5.772521 AGTTTGCAAGCACTAGTTTAATGG 58.227 37.500 16.04 0.00 0.00 3.16
2797 9012 7.584987 AGTAGTTTGCAAGCACTAGTTTAATG 58.415 34.615 16.04 0.00 0.00 1.90
2798 9013 7.094762 GGAGTAGTTTGCAAGCACTAGTTTAAT 60.095 37.037 16.04 0.00 30.63 1.40
2799 9014 6.204108 GGAGTAGTTTGCAAGCACTAGTTTAA 59.796 38.462 16.04 0.00 30.63 1.52
2800 9015 5.699458 GGAGTAGTTTGCAAGCACTAGTTTA 59.301 40.000 16.04 0.00 30.63 2.01
2801 9016 4.515567 GGAGTAGTTTGCAAGCACTAGTTT 59.484 41.667 16.04 3.43 30.63 2.66
2805 9020 3.323691 TCAGGAGTAGTTTGCAAGCACTA 59.676 43.478 16.04 11.14 0.00 2.74
2808 9023 2.104792 ACTCAGGAGTAGTTTGCAAGCA 59.895 45.455 16.04 0.00 40.43 3.91
2810 9025 4.024556 CACAACTCAGGAGTAGTTTGCAAG 60.025 45.833 1.78 0.00 41.58 4.01
2811 9026 3.876914 CACAACTCAGGAGTAGTTTGCAA 59.123 43.478 1.78 0.00 41.58 4.08
2812 9027 3.133901 TCACAACTCAGGAGTAGTTTGCA 59.866 43.478 1.78 0.00 41.58 4.08
2813 9028 3.495001 GTCACAACTCAGGAGTAGTTTGC 59.505 47.826 1.78 0.00 41.58 3.68
2814 9029 4.950050 AGTCACAACTCAGGAGTAGTTTG 58.050 43.478 1.78 0.10 41.58 2.93
2816 9031 4.218852 GCTAGTCACAACTCAGGAGTAGTT 59.781 45.833 1.78 0.00 41.58 2.24
2818 9033 3.181505 CGCTAGTCACAACTCAGGAGTAG 60.182 52.174 1.78 0.00 41.58 2.57
2819 9034 2.747989 CGCTAGTCACAACTCAGGAGTA 59.252 50.000 1.78 0.00 41.58 2.59
2820 9035 1.542030 CGCTAGTCACAACTCAGGAGT 59.458 52.381 0.00 0.00 44.94 3.85
2821 9036 1.813178 TCGCTAGTCACAACTCAGGAG 59.187 52.381 0.00 0.00 36.92 3.69
2822 9037 1.540267 GTCGCTAGTCACAACTCAGGA 59.460 52.381 0.00 0.00 36.92 3.86
2823 9038 1.402984 GGTCGCTAGTCACAACTCAGG 60.403 57.143 0.00 0.00 36.92 3.86
2824 9039 1.269723 TGGTCGCTAGTCACAACTCAG 59.730 52.381 0.00 0.00 36.92 3.35
2825 9040 1.324383 TGGTCGCTAGTCACAACTCA 58.676 50.000 0.00 0.00 36.92 3.41
2826 9041 2.433868 TTGGTCGCTAGTCACAACTC 57.566 50.000 0.00 0.00 36.92 3.01
2827 9042 2.902705 TTTGGTCGCTAGTCACAACT 57.097 45.000 0.00 0.00 39.66 3.16
2828 9043 4.219033 CAAATTTGGTCGCTAGTCACAAC 58.781 43.478 10.49 0.00 0.00 3.32
2829 9044 3.880490 ACAAATTTGGTCGCTAGTCACAA 59.120 39.130 21.74 0.00 0.00 3.33
2830 9045 3.472652 ACAAATTTGGTCGCTAGTCACA 58.527 40.909 21.74 0.00 0.00 3.58
2831 9046 4.219033 CAACAAATTTGGTCGCTAGTCAC 58.781 43.478 21.74 0.00 0.00 3.67
2832 9047 3.304391 GCAACAAATTTGGTCGCTAGTCA 60.304 43.478 21.74 0.00 0.00 3.41
2833 9048 3.234386 GCAACAAATTTGGTCGCTAGTC 58.766 45.455 21.74 0.00 0.00 2.59
2834 9049 2.621055 TGCAACAAATTTGGTCGCTAGT 59.379 40.909 21.74 0.00 0.00 2.57
2835 9050 3.236816 CTGCAACAAATTTGGTCGCTAG 58.763 45.455 21.74 15.29 0.00 3.42
2836 9051 2.606795 GCTGCAACAAATTTGGTCGCTA 60.607 45.455 21.74 11.05 0.00 4.26
2837 9052 1.869342 GCTGCAACAAATTTGGTCGCT 60.869 47.619 21.74 0.00 0.00 4.93
2838 9053 0.508213 GCTGCAACAAATTTGGTCGC 59.492 50.000 21.74 19.64 0.00 5.19
2839 9054 1.788308 CTGCTGCAACAAATTTGGTCG 59.212 47.619 21.74 11.34 0.00 4.79
2840 9055 1.528161 GCTGCTGCAACAAATTTGGTC 59.472 47.619 21.74 10.27 39.41 4.02
2849 9064 1.105457 AGTTTCAAGCTGCTGCAACA 58.895 45.000 18.42 0.00 42.74 3.33
2947 9162 6.566197 AATTTCAGAGCTAAACAGAAGTGG 57.434 37.500 0.00 0.00 0.00 4.00
2949 9164 9.952188 GTTTAAATTTCAGAGCTAAACAGAAGT 57.048 29.630 0.00 0.00 34.23 3.01
3302 11513 2.813042 GACTGCGCTGCTGACCTC 60.813 66.667 14.80 0.00 0.00 3.85
3308 11519 3.437795 GCCAATGACTGCGCTGCT 61.438 61.111 14.80 1.56 0.00 4.24
3311 11522 1.097547 GGTATGCCAATGACTGCGCT 61.098 55.000 9.73 0.00 34.09 5.92
3313 11524 0.464373 AGGGTATGCCAATGACTGCG 60.464 55.000 1.04 0.00 36.17 5.18
3314 11525 1.678101 GAAGGGTATGCCAATGACTGC 59.322 52.381 1.04 0.00 36.17 4.40
3320 11537 0.466189 CCAGCGAAGGGTATGCCAAT 60.466 55.000 1.04 0.00 36.17 3.16
3344 11561 1.414181 CTCAAGGCCGGATGTGTCTAT 59.586 52.381 5.05 0.00 0.00 1.98
3414 11631 2.027073 GGCGATGTCGTGCAGTTCA 61.027 57.895 4.20 0.00 42.22 3.18
3419 11636 2.885164 CATCGGCGATGTCGTGCA 60.885 61.111 35.12 1.25 42.22 4.57
3460 11677 0.381089 ATGTACTCGACACTAGCGGC 59.619 55.000 0.00 0.00 42.17 6.53
3466 11683 1.257743 AGGTGCATGTACTCGACACT 58.742 50.000 13.86 0.00 42.17 3.55
3475 11692 1.338674 CCGTCCTTCAAGGTGCATGTA 60.339 52.381 2.50 0.00 36.53 2.29
3478 11695 1.675641 GCCGTCCTTCAAGGTGCAT 60.676 57.895 2.50 0.00 36.53 3.96
3523 11740 2.485795 GCTGACGGTGGTTGCCAAA 61.486 57.895 0.00 0.00 34.18 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.