Multiple sequence alignment - TraesCS2B01G547200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G547200 chr2B 100.000 2600 0 0 1 2600 744059437 744056838 0.000000e+00 4802.0
1 TraesCS2B01G547200 chr2B 86.578 529 49 7 2091 2599 743926084 743925558 4.860000e-157 564.0
2 TraesCS2B01G547200 chr2B 92.958 355 20 3 1695 2046 743922862 743922510 1.780000e-141 512.0
3 TraesCS2B01G547200 chr2B 90.645 310 23 4 2091 2399 743922413 743922109 8.660000e-110 407.0
4 TraesCS2B01G547200 chr2B 95.082 183 9 0 1695 1877 743926304 743926122 3.270000e-74 289.0
5 TraesCS2B01G547200 chr2B 82.143 196 35 0 2404 2599 617935635 617935440 4.450000e-38 169.0
6 TraesCS2B01G547200 chr2B 94.444 36 1 1 2401 2435 9900567 9900532 1.000000e-03 54.7
7 TraesCS2B01G547200 chr2D 91.179 1213 52 12 731 1917 609516045 609514862 0.000000e+00 1596.0
8 TraesCS2B01G547200 chr2D 88.333 660 44 12 2 630 609517014 609516357 0.000000e+00 761.0
9 TraesCS2B01G547200 chr2D 84.594 357 30 9 2046 2399 609514629 609514295 5.360000e-87 331.0
10 TraesCS2B01G547200 chr2A 91.762 1141 40 13 733 1841 742293867 742292749 0.000000e+00 1537.0
11 TraesCS2B01G547200 chr2A 92.733 344 21 2 18 361 742294784 742294445 6.460000e-136 494.0
12 TraesCS2B01G547200 chr2A 88.435 294 27 5 2109 2399 742292385 742292096 5.330000e-92 348.0
13 TraesCS2B01G547200 chr2A 88.750 240 18 5 400 631 742294435 742294197 4.230000e-73 285.0
14 TraesCS2B01G547200 chr2A 84.615 91 14 0 647 737 742293991 742293901 9.910000e-15 91.6
15 TraesCS2B01G547200 chr4A 82.915 199 27 5 2402 2598 122254549 122254356 3.440000e-39 172.0
16 TraesCS2B01G547200 chr7D 82.514 183 24 8 1001 1179 611135689 611135867 1.250000e-33 154.0
17 TraesCS2B01G547200 chr7D 81.081 185 29 6 1001 1182 91143766 91143585 2.700000e-30 143.0
18 TraesCS2B01G547200 chr7B 81.967 183 25 8 1001 1179 700184178 700184356 5.800000e-32 148.0
19 TraesCS2B01G547200 chr7B 86.154 130 16 2 1054 1182 43754557 43754429 3.490000e-29 139.0
20 TraesCS2B01G547200 chr7A 81.868 182 27 6 1001 1179 93081906 93082084 5.800000e-32 148.0
21 TraesCS2B01G547200 chr7A 80.769 182 29 6 1001 1179 701149419 701149597 1.250000e-28 137.0
22 TraesCS2B01G547200 chr1D 80.000 190 36 2 2404 2593 467608116 467608303 3.490000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G547200 chr2B 744056838 744059437 2599 True 4802.00 4802 100.000000 1 2600 1 chr2B.!!$R3 2599
1 TraesCS2B01G547200 chr2B 743922109 743926304 4195 True 443.00 564 91.315750 1695 2599 4 chr2B.!!$R4 904
2 TraesCS2B01G547200 chr2D 609514295 609517014 2719 True 896.00 1596 88.035333 2 2399 3 chr2D.!!$R1 2397
3 TraesCS2B01G547200 chr2A 742292096 742294784 2688 True 551.12 1537 89.259000 18 2399 5 chr2A.!!$R1 2381

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
409 434 1.681264 AGAGTTTCACCCCGCAAAAAG 59.319 47.619 0.0 0.0 0.0 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2390 6282 1.338655 GATGCTCTAACTCGTCCCTCC 59.661 57.143 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 55 4.939271 GAGCCTACTCTTGATTAGGACAC 58.061 47.826 15.42 4.96 40.03 3.67
131 139 2.049894 TGCACATGCTTGCTTGCG 60.050 55.556 9.44 1.10 43.41 4.85
161 169 9.784531 ATAATGATGAGTAGGTAAATTGGACAG 57.215 33.333 0.00 0.00 0.00 3.51
171 179 9.169592 GTAGGTAAATTGGACAGCACTATTTAA 57.830 33.333 0.00 0.00 0.00 1.52
205 213 1.705186 AGGGTGAGGTACTGTTTGCAT 59.295 47.619 0.00 0.00 41.55 3.96
231 239 6.540914 TCCTGTTTCACCTTTTACTTGTACAG 59.459 38.462 0.00 0.00 0.00 2.74
240 264 7.643764 CACCTTTTACTTGTACAGAAATGTGTG 59.356 37.037 15.20 13.90 31.46 3.82
374 399 8.770438 TTTTGGCATTATCAAACAACTAATCC 57.230 30.769 0.00 0.00 34.34 3.01
384 409 7.815840 TCAAACAACTAATCCAACATTCTCA 57.184 32.000 0.00 0.00 0.00 3.27
409 434 1.681264 AGAGTTTCACCCCGCAAAAAG 59.319 47.619 0.00 0.00 0.00 2.27
411 436 2.619646 GAGTTTCACCCCGCAAAAAGTA 59.380 45.455 0.00 0.00 0.00 2.24
434 459 5.640147 ACAACCCTTCAGGATTGTTAATCA 58.360 37.500 0.00 0.00 36.86 2.57
435 460 6.074648 ACAACCCTTCAGGATTGTTAATCAA 58.925 36.000 0.00 0.00 36.86 2.57
501 528 5.683681 TCATGCAATCTGTATTTAGCCTCA 58.316 37.500 0.00 0.00 0.00 3.86
527 554 2.612212 GGAATGTTGATTACGACGCCAT 59.388 45.455 0.00 0.00 33.40 4.40
556 589 2.898705 AGAGTGCCAGATTGAATCGAC 58.101 47.619 0.00 0.00 0.00 4.20
631 664 4.702131 ACCACATTAGTTCCTCTTCATTGC 59.298 41.667 0.00 0.00 0.00 3.56
632 665 4.096984 CCACATTAGTTCCTCTTCATTGCC 59.903 45.833 0.00 0.00 0.00 4.52
633 666 3.941483 ACATTAGTTCCTCTTCATTGCCG 59.059 43.478 0.00 0.00 0.00 5.69
635 668 2.859165 AGTTCCTCTTCATTGCCGAA 57.141 45.000 0.00 0.00 0.00 4.30
636 669 2.704572 AGTTCCTCTTCATTGCCGAAG 58.295 47.619 0.00 0.00 43.17 3.79
679 903 8.340618 TCTGGACAATTATTTTCAGAAAGAGG 57.659 34.615 0.00 0.00 0.00 3.69
680 904 8.163408 TCTGGACAATTATTTTCAGAAAGAGGA 58.837 33.333 0.00 0.00 0.00 3.71
690 914 8.986929 ATTTTCAGAAAGAGGAAGTATATGGG 57.013 34.615 0.00 0.00 0.00 4.00
691 915 5.552870 TCAGAAAGAGGAAGTATATGGGC 57.447 43.478 0.00 0.00 0.00 5.36
735 997 4.589908 AGGGACTGCGATTGAATTTTACT 58.410 39.130 0.00 0.00 37.18 2.24
764 1026 2.036236 AGCTGTGCTTGCTTCAACC 58.964 52.632 0.00 0.00 37.52 3.77
872 1134 3.357079 GCTCCCAACTGTGCCACG 61.357 66.667 0.00 0.00 0.00 4.94
1094 1373 3.869272 CAACGAGCTGGATGCCGC 61.869 66.667 1.44 0.00 44.23 6.53
1233 1524 4.233635 CGTACGTCCTCCTCCGCG 62.234 72.222 7.22 0.00 0.00 6.46
1369 1660 3.949980 AGCAGCAGCAGCCTGACA 61.950 61.111 6.10 0.00 45.49 3.58
1613 1916 0.552848 AACTGATCCATGCCGGGAAT 59.447 50.000 0.00 0.00 41.12 3.01
1641 1944 2.097304 GCGATTGTTCATGCATGGTGTA 59.903 45.455 25.97 10.41 0.00 2.90
1643 1946 3.683989 GATTGTTCATGCATGGTGTACG 58.316 45.455 25.97 0.00 0.00 3.67
1644 1947 2.177394 TGTTCATGCATGGTGTACGT 57.823 45.000 25.97 0.00 0.00 3.57
1645 1948 3.320673 TGTTCATGCATGGTGTACGTA 57.679 42.857 25.97 1.33 0.00 3.57
1756 2059 2.011947 GCAGATCTGTGTAAGCATGCA 58.988 47.619 23.38 0.00 32.05 3.96
1766 2069 4.518590 TGTGTAAGCATGCACTGTAATGTT 59.481 37.500 21.98 4.30 42.06 2.71
1966 5771 1.270907 AGTTGGGAGTAGCTCACTGG 58.729 55.000 0.00 0.00 37.72 4.00
1984 5792 2.563179 CTGGCTCTGTTGTAGTAGTGGT 59.437 50.000 0.00 0.00 0.00 4.16
1988 5796 4.322801 GGCTCTGTTGTAGTAGTGGTTCAT 60.323 45.833 0.00 0.00 0.00 2.57
2022 5830 0.784178 CGATCGTATGGTTGCATCGG 59.216 55.000 7.03 0.00 34.12 4.18
2033 5841 0.249120 TTGCATCGGTCAGGACGAAT 59.751 50.000 0.00 0.00 44.20 3.34
2085 5971 0.108041 GGGATTTTGCTGGCACCATG 60.108 55.000 0.00 0.00 0.00 3.66
2088 5974 2.431782 GGATTTTGCTGGCACCATGTAT 59.568 45.455 0.00 0.00 0.00 2.29
2089 5975 3.636300 GGATTTTGCTGGCACCATGTATA 59.364 43.478 0.00 0.00 0.00 1.47
2094 5983 1.955778 GCTGGCACCATGTATATTGCA 59.044 47.619 0.00 0.00 36.66 4.08
2218 6109 7.806180 ACCTAATCTGGTAATTTGCTCAGTAT 58.194 34.615 0.00 0.00 38.79 2.12
2219 6110 8.934697 ACCTAATCTGGTAATTTGCTCAGTATA 58.065 33.333 0.00 0.00 38.79 1.47
2259 6150 1.001597 GTACGAGATAACTGCGGAGGG 60.002 57.143 9.36 0.00 0.00 4.30
2275 6166 4.131596 CGGAGGGAACTTTTGTAAAGACA 58.868 43.478 6.20 0.00 44.43 3.41
2318 6210 9.378551 GTACGCCAATTCATATCCATTAAGATA 57.621 33.333 0.00 0.00 33.38 1.98
2321 6213 8.607459 CGCCAATTCATATCCATTAAGATAGAC 58.393 37.037 0.00 0.00 32.39 2.59
2390 6282 0.385751 ATGTGTCGGATAGCAGGTCG 59.614 55.000 0.00 0.00 0.00 4.79
2391 6283 1.065928 GTGTCGGATAGCAGGTCGG 59.934 63.158 0.00 0.00 0.00 4.79
2405 6297 3.165606 GTCGGAGGGACGAGTTAGA 57.834 57.895 0.00 0.00 44.42 2.10
2406 6298 1.015868 GTCGGAGGGACGAGTTAGAG 58.984 60.000 0.00 0.00 44.42 2.43
2407 6299 0.747283 TCGGAGGGACGAGTTAGAGC 60.747 60.000 0.00 0.00 38.06 4.09
2408 6300 1.030488 CGGAGGGACGAGTTAGAGCA 61.030 60.000 0.00 0.00 35.47 4.26
2409 6301 1.404843 GGAGGGACGAGTTAGAGCAT 58.595 55.000 0.00 0.00 0.00 3.79
2410 6302 1.338655 GGAGGGACGAGTTAGAGCATC 59.661 57.143 0.00 0.00 0.00 3.91
2423 6315 2.507339 GAGCATCTCTAGCAGACACC 57.493 55.000 0.00 0.00 32.26 4.16
2424 6316 2.031120 GAGCATCTCTAGCAGACACCT 58.969 52.381 0.00 0.00 32.26 4.00
2425 6317 2.430332 GAGCATCTCTAGCAGACACCTT 59.570 50.000 0.00 0.00 32.26 3.50
2426 6318 3.634448 GAGCATCTCTAGCAGACACCTTA 59.366 47.826 0.00 0.00 32.26 2.69
2427 6319 4.026744 AGCATCTCTAGCAGACACCTTAA 58.973 43.478 0.00 0.00 32.26 1.85
2428 6320 4.467795 AGCATCTCTAGCAGACACCTTAAA 59.532 41.667 0.00 0.00 32.26 1.52
2429 6321 4.568760 GCATCTCTAGCAGACACCTTAAAC 59.431 45.833 0.00 0.00 32.26 2.01
2430 6322 4.803098 TCTCTAGCAGACACCTTAAACC 57.197 45.455 0.00 0.00 0.00 3.27
2431 6323 3.192844 TCTCTAGCAGACACCTTAAACCG 59.807 47.826 0.00 0.00 0.00 4.44
2432 6324 2.000447 CTAGCAGACACCTTAAACCGC 59.000 52.381 0.00 0.00 0.00 5.68
2433 6325 0.949105 AGCAGACACCTTAAACCGCG 60.949 55.000 0.00 0.00 0.00 6.46
2434 6326 0.947180 GCAGACACCTTAAACCGCGA 60.947 55.000 8.23 0.00 0.00 5.87
2435 6327 1.504359 CAGACACCTTAAACCGCGAA 58.496 50.000 8.23 0.00 0.00 4.70
2436 6328 1.868498 CAGACACCTTAAACCGCGAAA 59.132 47.619 8.23 0.00 0.00 3.46
2437 6329 2.482721 CAGACACCTTAAACCGCGAAAT 59.517 45.455 8.23 0.00 0.00 2.17
2438 6330 3.058501 CAGACACCTTAAACCGCGAAATT 60.059 43.478 8.23 1.41 0.00 1.82
2439 6331 3.058501 AGACACCTTAAACCGCGAAATTG 60.059 43.478 8.23 0.00 0.00 2.32
2440 6332 2.879646 ACACCTTAAACCGCGAAATTGA 59.120 40.909 8.23 0.00 0.00 2.57
2441 6333 3.315749 ACACCTTAAACCGCGAAATTGAA 59.684 39.130 8.23 0.00 0.00 2.69
2442 6334 4.202030 ACACCTTAAACCGCGAAATTGAAA 60.202 37.500 8.23 0.00 0.00 2.69
2443 6335 4.740695 CACCTTAAACCGCGAAATTGAAAA 59.259 37.500 8.23 0.00 0.00 2.29
2444 6336 5.404066 CACCTTAAACCGCGAAATTGAAAAT 59.596 36.000 8.23 0.00 0.00 1.82
2445 6337 5.404066 ACCTTAAACCGCGAAATTGAAAATG 59.596 36.000 8.23 0.00 0.00 2.32
2446 6338 3.786657 AAACCGCGAAATTGAAAATGC 57.213 38.095 8.23 0.00 0.00 3.56
2447 6339 1.335935 ACCGCGAAATTGAAAATGCG 58.664 45.000 8.23 0.00 44.68 4.73
2461 6353 4.373532 AAAATGCGATTTTCAGTTTGCG 57.626 36.364 0.00 0.00 37.96 4.85
2462 6354 1.981254 ATGCGATTTTCAGTTTGCGG 58.019 45.000 0.00 0.00 0.00 5.69
2463 6355 0.947960 TGCGATTTTCAGTTTGCGGA 59.052 45.000 0.00 0.00 0.00 5.54
2464 6356 1.335182 TGCGATTTTCAGTTTGCGGAA 59.665 42.857 0.00 0.00 0.00 4.30
2465 6357 2.223595 TGCGATTTTCAGTTTGCGGAAA 60.224 40.909 0.00 0.00 37.10 3.13
2466 6358 2.792116 GCGATTTTCAGTTTGCGGAAAA 59.208 40.909 2.79 0.41 46.75 2.29
2467 6359 3.361627 GCGATTTTCAGTTTGCGGAAAAC 60.362 43.478 2.79 3.24 46.01 2.43
2479 6371 7.646446 GTTTGCGGAAAACATATTTTAAGGT 57.354 32.000 2.79 0.00 46.30 3.50
2480 6372 8.078959 GTTTGCGGAAAACATATTTTAAGGTT 57.921 30.769 2.79 0.00 46.30 3.50
2481 6373 7.876896 TTGCGGAAAACATATTTTAAGGTTC 57.123 32.000 0.00 0.00 38.17 3.62
2482 6374 6.982852 TGCGGAAAACATATTTTAAGGTTCA 58.017 32.000 0.00 0.00 38.17 3.18
2483 6375 7.434492 TGCGGAAAACATATTTTAAGGTTCAA 58.566 30.769 0.00 0.00 38.17 2.69
2484 6376 8.091449 TGCGGAAAACATATTTTAAGGTTCAAT 58.909 29.630 0.00 0.00 38.17 2.57
2485 6377 8.931775 GCGGAAAACATATTTTAAGGTTCAATT 58.068 29.630 0.00 0.00 38.17 2.32
2494 6386 7.581011 ATTTTAAGGTTCAATTTAAGCTGCG 57.419 32.000 4.92 0.00 37.28 5.18
2495 6387 5.699097 TTAAGGTTCAATTTAAGCTGCGT 57.301 34.783 4.92 0.00 37.28 5.24
2496 6388 3.831715 AGGTTCAATTTAAGCTGCGTC 57.168 42.857 3.36 0.00 35.92 5.19
2497 6389 2.488153 AGGTTCAATTTAAGCTGCGTCC 59.512 45.455 3.36 0.00 35.92 4.79
2498 6390 2.505866 GTTCAATTTAAGCTGCGTCCG 58.494 47.619 0.00 0.00 0.00 4.79
2499 6391 2.087501 TCAATTTAAGCTGCGTCCGA 57.912 45.000 0.00 0.00 0.00 4.55
2500 6392 2.418692 TCAATTTAAGCTGCGTCCGAA 58.581 42.857 0.00 0.00 0.00 4.30
2501 6393 2.158841 TCAATTTAAGCTGCGTCCGAAC 59.841 45.455 0.00 0.00 0.00 3.95
2502 6394 1.803334 ATTTAAGCTGCGTCCGAACA 58.197 45.000 0.00 0.00 0.00 3.18
2503 6395 1.144969 TTTAAGCTGCGTCCGAACAG 58.855 50.000 0.00 0.00 36.96 3.16
2504 6396 0.315886 TTAAGCTGCGTCCGAACAGA 59.684 50.000 4.26 0.00 35.90 3.41
2505 6397 0.109272 TAAGCTGCGTCCGAACAGAG 60.109 55.000 4.26 0.00 35.90 3.35
2506 6398 2.049063 GCTGCGTCCGAACAGAGT 60.049 61.111 4.26 0.00 35.90 3.24
2507 6399 1.664965 GCTGCGTCCGAACAGAGTT 60.665 57.895 4.26 0.00 35.90 3.01
2508 6400 1.618640 GCTGCGTCCGAACAGAGTTC 61.619 60.000 4.26 0.00 35.90 3.01
2509 6401 0.039074 CTGCGTCCGAACAGAGTTCT 60.039 55.000 8.11 0.00 35.90 3.01
2510 6402 0.387929 TGCGTCCGAACAGAGTTCTT 59.612 50.000 8.11 0.00 0.00 2.52
2511 6403 1.610038 TGCGTCCGAACAGAGTTCTTA 59.390 47.619 8.11 0.00 0.00 2.10
2512 6404 2.034939 TGCGTCCGAACAGAGTTCTTAA 59.965 45.455 8.11 0.00 0.00 1.85
2513 6405 3.054878 GCGTCCGAACAGAGTTCTTAAA 58.945 45.455 8.11 0.00 0.00 1.52
2514 6406 3.121092 GCGTCCGAACAGAGTTCTTAAAC 60.121 47.826 8.11 1.26 35.50 2.01
2525 6417 4.853924 AGTTCTTAAACTCGGACCGTAA 57.146 40.909 14.79 4.16 42.10 3.18
2526 6418 5.200368 AGTTCTTAAACTCGGACCGTAAA 57.800 39.130 14.79 1.81 42.10 2.01
2527 6419 5.600696 AGTTCTTAAACTCGGACCGTAAAA 58.399 37.500 14.79 2.16 42.10 1.52
2528 6420 5.463392 AGTTCTTAAACTCGGACCGTAAAAC 59.537 40.000 14.79 11.17 42.10 2.43
2529 6421 4.306600 TCTTAAACTCGGACCGTAAAACC 58.693 43.478 14.79 0.00 0.00 3.27
2530 6422 1.501169 AAACTCGGACCGTAAAACCG 58.499 50.000 14.79 0.00 46.71 4.44
2553 6445 7.139300 CGAATATTCGCGTATATTCTTCCTC 57.861 40.000 35.06 21.13 44.26 3.71
2554 6446 6.745907 CGAATATTCGCGTATATTCTTCCTCA 59.254 38.462 35.06 8.03 44.26 3.86
2555 6447 7.253354 CGAATATTCGCGTATATTCTTCCTCAC 60.253 40.741 35.06 19.81 44.26 3.51
2556 6448 3.263602 TCGCGTATATTCTTCCTCACG 57.736 47.619 5.77 0.00 0.00 4.35
2557 6449 2.615447 TCGCGTATATTCTTCCTCACGT 59.385 45.455 5.77 0.00 0.00 4.49
2558 6450 2.971915 CGCGTATATTCTTCCTCACGTC 59.028 50.000 0.00 0.00 0.00 4.34
2559 6451 3.303857 CGCGTATATTCTTCCTCACGTCT 60.304 47.826 0.00 0.00 0.00 4.18
2560 6452 4.608951 GCGTATATTCTTCCTCACGTCTT 58.391 43.478 0.00 0.00 0.00 3.01
2561 6453 5.559608 CGCGTATATTCTTCCTCACGTCTTA 60.560 44.000 0.00 0.00 0.00 2.10
2562 6454 6.380190 GCGTATATTCTTCCTCACGTCTTAT 58.620 40.000 0.00 0.00 0.00 1.73
2563 6455 6.862090 GCGTATATTCTTCCTCACGTCTTATT 59.138 38.462 0.00 0.00 0.00 1.40
2564 6456 7.060864 GCGTATATTCTTCCTCACGTCTTATTC 59.939 40.741 0.00 0.00 0.00 1.75
2565 6457 8.291032 CGTATATTCTTCCTCACGTCTTATTCT 58.709 37.037 0.00 0.00 0.00 2.40
2566 6458 9.968870 GTATATTCTTCCTCACGTCTTATTCTT 57.031 33.333 0.00 0.00 0.00 2.52
2568 6460 5.326200 TCTTCCTCACGTCTTATTCTTCC 57.674 43.478 0.00 0.00 0.00 3.46
2569 6461 5.017490 TCTTCCTCACGTCTTATTCTTCCT 58.983 41.667 0.00 0.00 0.00 3.36
2570 6462 4.985538 TCCTCACGTCTTATTCTTCCTC 57.014 45.455 0.00 0.00 0.00 3.71
2571 6463 4.601084 TCCTCACGTCTTATTCTTCCTCT 58.399 43.478 0.00 0.00 0.00 3.69
2572 6464 4.641094 TCCTCACGTCTTATTCTTCCTCTC 59.359 45.833 0.00 0.00 0.00 3.20
2573 6465 4.496673 CCTCACGTCTTATTCTTCCTCTCG 60.497 50.000 0.00 0.00 0.00 4.04
2574 6466 3.109619 CACGTCTTATTCTTCCTCTCGC 58.890 50.000 0.00 0.00 0.00 5.03
2575 6467 2.099427 ACGTCTTATTCTTCCTCTCGCC 59.901 50.000 0.00 0.00 0.00 5.54
2576 6468 2.544069 CGTCTTATTCTTCCTCTCGCCC 60.544 54.545 0.00 0.00 0.00 6.13
2577 6469 1.681793 TCTTATTCTTCCTCTCGCCCG 59.318 52.381 0.00 0.00 0.00 6.13
2578 6470 1.409427 CTTATTCTTCCTCTCGCCCGT 59.591 52.381 0.00 0.00 0.00 5.28
2579 6471 0.744874 TATTCTTCCTCTCGCCCGTG 59.255 55.000 0.00 0.00 0.00 4.94
2580 6472 1.258445 ATTCTTCCTCTCGCCCGTGT 61.258 55.000 0.00 0.00 0.00 4.49
2581 6473 1.469335 TTCTTCCTCTCGCCCGTGTT 61.469 55.000 0.00 0.00 0.00 3.32
2582 6474 1.446272 CTTCCTCTCGCCCGTGTTC 60.446 63.158 0.00 0.00 0.00 3.18
2583 6475 2.154798 CTTCCTCTCGCCCGTGTTCA 62.155 60.000 0.00 0.00 0.00 3.18
2584 6476 1.541310 TTCCTCTCGCCCGTGTTCAT 61.541 55.000 0.00 0.00 0.00 2.57
2585 6477 0.681887 TCCTCTCGCCCGTGTTCATA 60.682 55.000 0.00 0.00 0.00 2.15
2586 6478 0.174845 CCTCTCGCCCGTGTTCATAA 59.825 55.000 0.00 0.00 0.00 1.90
2587 6479 1.202533 CCTCTCGCCCGTGTTCATAAT 60.203 52.381 0.00 0.00 0.00 1.28
2588 6480 2.128035 CTCTCGCCCGTGTTCATAATC 58.872 52.381 0.00 0.00 0.00 1.75
2589 6481 1.478916 TCTCGCCCGTGTTCATAATCA 59.521 47.619 0.00 0.00 0.00 2.57
2590 6482 1.860950 CTCGCCCGTGTTCATAATCAG 59.139 52.381 0.00 0.00 0.00 2.90
2591 6483 0.304705 CGCCCGTGTTCATAATCAGC 59.695 55.000 0.00 0.00 0.00 4.26
2592 6484 1.668419 GCCCGTGTTCATAATCAGCT 58.332 50.000 0.00 0.00 0.00 4.24
2593 6485 2.017049 GCCCGTGTTCATAATCAGCTT 58.983 47.619 0.00 0.00 0.00 3.74
2594 6486 2.032178 GCCCGTGTTCATAATCAGCTTC 59.968 50.000 0.00 0.00 0.00 3.86
2595 6487 2.614057 CCCGTGTTCATAATCAGCTTCC 59.386 50.000 0.00 0.00 0.00 3.46
2596 6488 2.285220 CCGTGTTCATAATCAGCTTCCG 59.715 50.000 0.00 0.00 0.00 4.30
2597 6489 2.930040 CGTGTTCATAATCAGCTTCCGT 59.070 45.455 0.00 0.00 0.00 4.69
2598 6490 3.000322 CGTGTTCATAATCAGCTTCCGTC 60.000 47.826 0.00 0.00 0.00 4.79
2599 6491 3.932710 GTGTTCATAATCAGCTTCCGTCA 59.067 43.478 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.357517 GTGACCCCTGTGTGCTCG 60.358 66.667 0.00 0.00 0.00 5.03
131 139 7.611855 CCAATTTACCTACTCATCATTATCCCC 59.388 40.741 0.00 0.00 0.00 4.81
171 179 6.858792 ACCTCACCCTATTTAATACCCAAT 57.141 37.500 0.00 0.00 0.00 3.16
205 213 6.885376 TGTACAAGTAAAAGGTGAAACAGGAA 59.115 34.615 0.00 0.00 39.98 3.36
255 279 2.423538 GAGCGCATCACCACCTAAATTT 59.576 45.455 11.47 0.00 0.00 1.82
256 280 2.017049 GAGCGCATCACCACCTAAATT 58.983 47.619 11.47 0.00 0.00 1.82
257 281 1.065491 TGAGCGCATCACCACCTAAAT 60.065 47.619 11.47 0.00 31.12 1.40
311 335 2.564504 AGACAACGGGAGTAGGGTTTAC 59.435 50.000 0.00 0.00 46.69 2.01
352 377 7.039434 TGTTGGATTAGTTGTTTGATAATGCCA 60.039 33.333 0.00 0.00 0.00 4.92
353 378 7.319646 TGTTGGATTAGTTGTTTGATAATGCC 58.680 34.615 0.00 0.00 0.00 4.40
354 379 8.931385 ATGTTGGATTAGTTGTTTGATAATGC 57.069 30.769 0.00 0.00 0.00 3.56
361 386 8.870160 TTTGAGAATGTTGGATTAGTTGTTTG 57.130 30.769 0.00 0.00 0.00 2.93
374 399 7.809806 GGGTGAAACTCTATTTTGAGAATGTTG 59.190 37.037 0.00 0.00 37.50 3.33
384 409 3.149005 TGCGGGGTGAAACTCTATTTT 57.851 42.857 0.00 0.00 37.58 1.82
388 413 2.642154 TTTTGCGGGGTGAAACTCTA 57.358 45.000 0.00 0.00 37.58 2.43
435 460 9.896645 AGTAGACATGACTAACATTGATTTGAT 57.103 29.630 6.48 0.00 37.07 2.57
469 496 6.782298 ATACAGATTGCATGATTTCTCTCG 57.218 37.500 0.00 0.00 0.00 4.04
501 528 4.119862 CGTCGTAATCAACATTCCCTCAT 58.880 43.478 0.00 0.00 0.00 2.90
556 589 1.078848 CCGGCACCCTTGAAGAGAG 60.079 63.158 0.00 0.00 0.00 3.20
631 664 8.715998 CAGAAATAGATACATCCATTTCTTCGG 58.284 37.037 17.54 7.99 46.02 4.30
632 665 8.715998 CCAGAAATAGATACATCCATTTCTTCG 58.284 37.037 17.54 10.77 46.02 3.79
633 666 9.784531 TCCAGAAATAGATACATCCATTTCTTC 57.215 33.333 17.54 0.00 46.02 2.87
636 669 8.908786 TGTCCAGAAATAGATACATCCATTTC 57.091 34.615 12.44 12.44 41.83 2.17
657 881 8.797438 ACTTCCTCTTTCTGAAAATAATTGTCC 58.203 33.333 4.18 0.00 0.00 4.02
671 895 3.967987 ACGCCCATATACTTCCTCTTTCT 59.032 43.478 0.00 0.00 0.00 2.52
674 898 3.305720 TCACGCCCATATACTTCCTCTT 58.694 45.455 0.00 0.00 0.00 2.85
706 930 0.460311 AATCGCAGTCCCTAGAACGG 59.540 55.000 0.00 0.00 0.00 4.44
735 997 4.219070 AGCAAGCACAGCTTCAAATTATGA 59.781 37.500 0.50 0.00 46.77 2.15
760 1022 6.814644 TGAGTGTGTAATAATAAGGACGGTTG 59.185 38.462 0.00 0.00 0.00 3.77
764 1026 6.255020 GTGGTGAGTGTGTAATAATAAGGACG 59.745 42.308 0.00 0.00 0.00 4.79
931 1193 3.128242 ACTCGGTCGTGAGGTTTATAGTG 59.872 47.826 6.94 0.00 40.39 2.74
1215 1506 3.885521 GCGGAGGAGGACGTACGG 61.886 72.222 21.06 1.43 38.47 4.02
1216 1507 4.233635 CGCGGAGGAGGACGTACG 62.234 72.222 15.01 15.01 40.60 3.67
1643 1946 3.515330 ACAATGGCTGGTACGTACTAC 57.485 47.619 24.07 13.73 0.00 2.73
1644 1947 4.247258 CAAACAATGGCTGGTACGTACTA 58.753 43.478 24.07 18.04 0.00 1.82
1645 1948 3.071479 CAAACAATGGCTGGTACGTACT 58.929 45.455 24.07 1.24 0.00 2.73
1756 2059 2.936498 GTCGCCATGCTAACATTACAGT 59.064 45.455 0.00 0.00 32.87 3.55
1766 2069 1.617018 AAGCAGAGGTCGCCATGCTA 61.617 55.000 20.44 0.00 44.28 3.49
1966 5771 4.252971 TGAACCACTACTACAACAGAGC 57.747 45.455 0.00 0.00 0.00 4.09
2022 5830 1.751924 AGGTAGAGCATTCGTCCTGAC 59.248 52.381 0.00 0.00 32.79 3.51
2033 5841 3.769739 TTTGAGCAGAAAGGTAGAGCA 57.230 42.857 0.00 0.00 0.00 4.26
2088 5974 9.941325 ATTTCCAACTGATGTAAAATTGCAATA 57.059 25.926 13.39 0.00 0.00 1.90
2089 5975 8.851541 ATTTCCAACTGATGTAAAATTGCAAT 57.148 26.923 5.99 5.99 0.00 3.56
2112 6001 4.289148 TCCAAGGCCATGGAATTGAAAATT 59.711 37.500 27.21 0.00 46.36 1.82
2218 6109 4.846040 ACAAGTACAACAGTGGTGGTTTA 58.154 39.130 13.89 0.00 32.09 2.01
2219 6110 3.692690 ACAAGTACAACAGTGGTGGTTT 58.307 40.909 13.89 0.62 32.09 3.27
2275 6166 2.675889 CGTACGGTTGCTAGGTTGGATT 60.676 50.000 7.57 0.00 0.00 3.01
2318 6210 2.505407 TGCCATAGTGCTGGTATTGTCT 59.495 45.455 0.00 0.00 38.63 3.41
2321 6213 2.923121 ACTGCCATAGTGCTGGTATTG 58.077 47.619 0.00 0.00 38.49 1.90
2390 6282 1.338655 GATGCTCTAACTCGTCCCTCC 59.661 57.143 0.00 0.00 0.00 4.30
2391 6283 2.292292 GAGATGCTCTAACTCGTCCCTC 59.708 54.545 0.00 0.00 0.00 4.30
2399 6291 4.338118 GTGTCTGCTAGAGATGCTCTAACT 59.662 45.833 5.75 0.00 41.74 2.24
2400 6292 4.499019 GGTGTCTGCTAGAGATGCTCTAAC 60.499 50.000 5.75 2.48 41.74 2.34
2401 6293 3.634448 GGTGTCTGCTAGAGATGCTCTAA 59.366 47.826 5.75 0.00 41.74 2.10
2402 6294 3.117701 AGGTGTCTGCTAGAGATGCTCTA 60.118 47.826 0.00 4.30 41.50 2.43
2403 6295 2.031120 GGTGTCTGCTAGAGATGCTCT 58.969 52.381 0.00 2.22 43.83 4.09
2404 6296 2.031120 AGGTGTCTGCTAGAGATGCTC 58.969 52.381 0.00 0.00 31.63 4.26
2405 6297 2.157640 AGGTGTCTGCTAGAGATGCT 57.842 50.000 0.00 0.00 31.63 3.79
2406 6298 2.977772 AAGGTGTCTGCTAGAGATGC 57.022 50.000 0.00 0.00 31.63 3.91
2407 6299 5.112686 GGTTTAAGGTGTCTGCTAGAGATG 58.887 45.833 0.00 0.00 31.63 2.90
2408 6300 4.142138 CGGTTTAAGGTGTCTGCTAGAGAT 60.142 45.833 0.00 0.00 31.63 2.75
2409 6301 3.192844 CGGTTTAAGGTGTCTGCTAGAGA 59.807 47.826 0.00 0.00 0.00 3.10
2410 6302 3.512680 CGGTTTAAGGTGTCTGCTAGAG 58.487 50.000 0.00 0.00 0.00 2.43
2411 6303 2.353406 GCGGTTTAAGGTGTCTGCTAGA 60.353 50.000 0.00 0.00 0.00 2.43
2412 6304 2.000447 GCGGTTTAAGGTGTCTGCTAG 59.000 52.381 0.00 0.00 0.00 3.42
2413 6305 1.670674 CGCGGTTTAAGGTGTCTGCTA 60.671 52.381 0.00 0.00 0.00 3.49
2414 6306 0.949105 CGCGGTTTAAGGTGTCTGCT 60.949 55.000 0.00 0.00 0.00 4.24
2415 6307 0.947180 TCGCGGTTTAAGGTGTCTGC 60.947 55.000 6.13 0.00 0.00 4.26
2416 6308 1.504359 TTCGCGGTTTAAGGTGTCTG 58.496 50.000 6.13 0.00 0.00 3.51
2417 6309 2.243602 TTTCGCGGTTTAAGGTGTCT 57.756 45.000 6.13 0.00 0.00 3.41
2418 6310 3.058777 TCAATTTCGCGGTTTAAGGTGTC 60.059 43.478 6.13 0.00 0.00 3.67
2419 6311 2.879646 TCAATTTCGCGGTTTAAGGTGT 59.120 40.909 6.13 0.00 0.00 4.16
2420 6312 3.546002 TCAATTTCGCGGTTTAAGGTG 57.454 42.857 6.13 0.00 0.00 4.00
2421 6313 4.571372 TTTCAATTTCGCGGTTTAAGGT 57.429 36.364 6.13 0.00 0.00 3.50
2422 6314 5.667644 GCATTTTCAATTTCGCGGTTTAAGG 60.668 40.000 6.13 0.00 0.00 2.69
2423 6315 5.305036 GCATTTTCAATTTCGCGGTTTAAG 58.695 37.500 6.13 0.00 0.00 1.85
2424 6316 4.143514 CGCATTTTCAATTTCGCGGTTTAA 60.144 37.500 6.13 0.00 39.09 1.52
2425 6317 3.362237 CGCATTTTCAATTTCGCGGTTTA 59.638 39.130 6.13 0.00 39.09 2.01
2426 6318 2.154772 CGCATTTTCAATTTCGCGGTTT 59.845 40.909 6.13 0.00 39.09 3.27
2427 6319 1.718711 CGCATTTTCAATTTCGCGGTT 59.281 42.857 6.13 0.00 39.09 4.44
2428 6320 1.068885 TCGCATTTTCAATTTCGCGGT 60.069 42.857 6.13 0.00 42.75 5.68
2429 6321 1.612156 TCGCATTTTCAATTTCGCGG 58.388 45.000 6.13 0.00 42.75 6.46
2430 6322 3.887069 AATCGCATTTTCAATTTCGCG 57.113 38.095 0.00 0.00 43.80 5.87
2440 6332 3.184178 CCGCAAACTGAAAATCGCATTTT 59.816 39.130 6.57 6.57 44.56 1.82
2441 6333 2.730928 CCGCAAACTGAAAATCGCATTT 59.269 40.909 0.00 0.00 0.00 2.32
2442 6334 2.030363 TCCGCAAACTGAAAATCGCATT 60.030 40.909 0.00 0.00 0.00 3.56
2443 6335 1.539388 TCCGCAAACTGAAAATCGCAT 59.461 42.857 0.00 0.00 0.00 4.73
2444 6336 0.947960 TCCGCAAACTGAAAATCGCA 59.052 45.000 0.00 0.00 0.00 5.10
2445 6337 2.044888 TTCCGCAAACTGAAAATCGC 57.955 45.000 0.00 0.00 0.00 4.58
2446 6338 3.794028 TGTTTTCCGCAAACTGAAAATCG 59.206 39.130 9.17 0.00 44.68 3.34
2447 6339 5.905480 ATGTTTTCCGCAAACTGAAAATC 57.095 34.783 9.17 0.00 44.68 2.17
2448 6340 7.961325 AATATGTTTTCCGCAAACTGAAAAT 57.039 28.000 9.17 0.00 44.68 1.82
2449 6341 7.778470 AAATATGTTTTCCGCAAACTGAAAA 57.222 28.000 9.17 0.00 44.68 2.29
2450 6342 7.778470 AAAATATGTTTTCCGCAAACTGAAA 57.222 28.000 9.17 0.00 44.68 2.69
2451 6343 8.873215 TTAAAATATGTTTTCCGCAAACTGAA 57.127 26.923 3.18 0.00 44.68 3.02
2452 6344 7.596995 CCTTAAAATATGTTTTCCGCAAACTGA 59.403 33.333 3.18 0.00 44.68 3.41
2453 6345 7.383843 ACCTTAAAATATGTTTTCCGCAAACTG 59.616 33.333 3.18 0.00 44.68 3.16
2454 6346 7.438564 ACCTTAAAATATGTTTTCCGCAAACT 58.561 30.769 3.18 0.35 44.68 2.66
2455 6347 7.646446 ACCTTAAAATATGTTTTCCGCAAAC 57.354 32.000 3.18 2.34 44.64 2.93
2456 6348 7.926555 TGAACCTTAAAATATGTTTTCCGCAAA 59.073 29.630 3.18 0.00 38.44 3.68
2457 6349 7.434492 TGAACCTTAAAATATGTTTTCCGCAA 58.566 30.769 3.18 0.00 38.44 4.85
2458 6350 6.982852 TGAACCTTAAAATATGTTTTCCGCA 58.017 32.000 3.18 0.00 38.44 5.69
2459 6351 7.876896 TTGAACCTTAAAATATGTTTTCCGC 57.123 32.000 3.18 0.00 38.44 5.54
2468 6360 9.301153 CGCAGCTTAAATTGAACCTTAAAATAT 57.699 29.630 0.00 0.00 0.00 1.28
2469 6361 8.301002 ACGCAGCTTAAATTGAACCTTAAAATA 58.699 29.630 0.00 0.00 0.00 1.40
2470 6362 7.151976 ACGCAGCTTAAATTGAACCTTAAAAT 58.848 30.769 0.00 0.00 0.00 1.82
2471 6363 6.508777 ACGCAGCTTAAATTGAACCTTAAAA 58.491 32.000 0.00 0.00 0.00 1.52
2472 6364 6.079424 ACGCAGCTTAAATTGAACCTTAAA 57.921 33.333 0.00 0.00 0.00 1.52
2473 6365 5.335348 GGACGCAGCTTAAATTGAACCTTAA 60.335 40.000 0.00 0.00 0.00 1.85
2474 6366 4.155280 GGACGCAGCTTAAATTGAACCTTA 59.845 41.667 0.00 0.00 0.00 2.69
2475 6367 3.057526 GGACGCAGCTTAAATTGAACCTT 60.058 43.478 0.00 0.00 0.00 3.50
2476 6368 2.488153 GGACGCAGCTTAAATTGAACCT 59.512 45.455 0.00 0.00 0.00 3.50
2477 6369 2.727916 CGGACGCAGCTTAAATTGAACC 60.728 50.000 0.00 0.00 0.00 3.62
2478 6370 2.158841 TCGGACGCAGCTTAAATTGAAC 59.841 45.455 0.00 0.00 0.00 3.18
2479 6371 2.418692 TCGGACGCAGCTTAAATTGAA 58.581 42.857 0.00 0.00 0.00 2.69
2480 6372 2.087501 TCGGACGCAGCTTAAATTGA 57.912 45.000 0.00 0.00 0.00 2.57
2481 6373 2.095969 TGTTCGGACGCAGCTTAAATTG 60.096 45.455 0.00 0.00 0.00 2.32
2482 6374 2.147958 TGTTCGGACGCAGCTTAAATT 58.852 42.857 0.00 0.00 0.00 1.82
2483 6375 1.732259 CTGTTCGGACGCAGCTTAAAT 59.268 47.619 0.00 0.00 0.00 1.40
2484 6376 1.144969 CTGTTCGGACGCAGCTTAAA 58.855 50.000 0.00 0.00 0.00 1.52
2485 6377 0.315886 TCTGTTCGGACGCAGCTTAA 59.684 50.000 0.00 0.00 33.09 1.85
2486 6378 0.109272 CTCTGTTCGGACGCAGCTTA 60.109 55.000 0.00 0.00 33.09 3.09
2487 6379 1.373497 CTCTGTTCGGACGCAGCTT 60.373 57.895 0.00 0.00 33.09 3.74
2488 6380 2.088674 AACTCTGTTCGGACGCAGCT 62.089 55.000 0.00 0.00 33.09 4.24
2489 6381 1.618640 GAACTCTGTTCGGACGCAGC 61.619 60.000 0.00 0.00 33.09 5.25
2490 6382 0.039074 AGAACTCTGTTCGGACGCAG 60.039 55.000 5.02 3.20 0.00 5.18
2491 6383 0.387929 AAGAACTCTGTTCGGACGCA 59.612 50.000 5.02 0.00 0.00 5.24
2492 6384 2.342910 TAAGAACTCTGTTCGGACGC 57.657 50.000 5.02 0.00 0.00 5.19
2493 6385 4.296690 AGTTTAAGAACTCTGTTCGGACG 58.703 43.478 5.02 0.00 42.35 4.79
2505 6397 5.333339 GGTTTTACGGTCCGAGTTTAAGAAC 60.333 44.000 20.51 11.77 35.97 3.01
2506 6398 4.749598 GGTTTTACGGTCCGAGTTTAAGAA 59.250 41.667 20.51 1.49 0.00 2.52
2507 6399 4.306600 GGTTTTACGGTCCGAGTTTAAGA 58.693 43.478 20.51 0.00 0.00 2.10
2508 6400 3.121778 CGGTTTTACGGTCCGAGTTTAAG 59.878 47.826 20.51 0.36 46.05 1.85
2509 6401 3.056304 CGGTTTTACGGTCCGAGTTTAA 58.944 45.455 20.51 2.86 46.05 1.52
2510 6402 2.294791 TCGGTTTTACGGTCCGAGTTTA 59.705 45.455 20.51 0.00 46.54 2.01
2511 6403 1.068434 TCGGTTTTACGGTCCGAGTTT 59.932 47.619 20.51 0.00 46.54 2.66
2512 6404 0.673437 TCGGTTTTACGGTCCGAGTT 59.327 50.000 20.51 0.00 46.54 3.01
2513 6405 2.340427 TCGGTTTTACGGTCCGAGT 58.660 52.632 20.51 0.00 46.54 4.18
2516 6408 3.061006 CGAATATTCGGTTTTACGGTCCG 60.061 47.826 26.61 10.48 46.30 4.79
2517 6409 4.442350 CGAATATTCGGTTTTACGGTCC 57.558 45.455 26.61 0.00 46.30 4.46
2530 6422 7.253354 CGTGAGGAAGAATATACGCGAATATTC 60.253 40.741 15.93 5.30 44.16 1.75
2531 6423 6.527023 CGTGAGGAAGAATATACGCGAATATT 59.473 38.462 15.93 2.27 35.27 1.28
2532 6424 6.028368 CGTGAGGAAGAATATACGCGAATAT 58.972 40.000 15.93 3.33 34.05 1.28
2533 6425 5.049198 ACGTGAGGAAGAATATACGCGAATA 60.049 40.000 15.93 0.00 35.17 1.75
2534 6426 4.227538 CGTGAGGAAGAATATACGCGAAT 58.772 43.478 15.93 0.00 34.05 3.34
2535 6427 3.065786 ACGTGAGGAAGAATATACGCGAA 59.934 43.478 15.93 0.00 35.17 4.70
2536 6428 2.615447 ACGTGAGGAAGAATATACGCGA 59.385 45.455 15.93 0.00 35.17 5.87
2537 6429 2.971915 GACGTGAGGAAGAATATACGCG 59.028 50.000 3.53 3.53 35.17 6.01
2538 6430 4.226113 AGACGTGAGGAAGAATATACGC 57.774 45.455 0.00 0.00 35.17 4.42
2539 6431 8.291032 AGAATAAGACGTGAGGAAGAATATACG 58.709 37.037 0.00 0.00 37.54 3.06
2540 6432 9.968870 AAGAATAAGACGTGAGGAAGAATATAC 57.031 33.333 0.00 0.00 0.00 1.47
2542 6434 8.145122 GGAAGAATAAGACGTGAGGAAGAATAT 58.855 37.037 0.00 0.00 0.00 1.28
2543 6435 7.342284 AGGAAGAATAAGACGTGAGGAAGAATA 59.658 37.037 0.00 0.00 0.00 1.75
2544 6436 6.155393 AGGAAGAATAAGACGTGAGGAAGAAT 59.845 38.462 0.00 0.00 0.00 2.40
2545 6437 5.480772 AGGAAGAATAAGACGTGAGGAAGAA 59.519 40.000 0.00 0.00 0.00 2.52
2546 6438 5.017490 AGGAAGAATAAGACGTGAGGAAGA 58.983 41.667 0.00 0.00 0.00 2.87
2547 6439 5.126384 AGAGGAAGAATAAGACGTGAGGAAG 59.874 44.000 0.00 0.00 0.00 3.46
2548 6440 5.017490 AGAGGAAGAATAAGACGTGAGGAA 58.983 41.667 0.00 0.00 0.00 3.36
2549 6441 4.601084 AGAGGAAGAATAAGACGTGAGGA 58.399 43.478 0.00 0.00 0.00 3.71
2550 6442 4.496673 CGAGAGGAAGAATAAGACGTGAGG 60.497 50.000 0.00 0.00 0.00 3.86
2551 6443 4.593157 CGAGAGGAAGAATAAGACGTGAG 58.407 47.826 0.00 0.00 0.00 3.51
2552 6444 3.181499 GCGAGAGGAAGAATAAGACGTGA 60.181 47.826 0.00 0.00 0.00 4.35
2553 6445 3.109619 GCGAGAGGAAGAATAAGACGTG 58.890 50.000 0.00 0.00 0.00 4.49
2554 6446 2.099427 GGCGAGAGGAAGAATAAGACGT 59.901 50.000 0.00 0.00 0.00 4.34
2555 6447 2.544069 GGGCGAGAGGAAGAATAAGACG 60.544 54.545 0.00 0.00 0.00 4.18
2556 6448 2.544069 CGGGCGAGAGGAAGAATAAGAC 60.544 54.545 0.00 0.00 0.00 3.01
2557 6449 1.681793 CGGGCGAGAGGAAGAATAAGA 59.318 52.381 0.00 0.00 0.00 2.10
2558 6450 1.409427 ACGGGCGAGAGGAAGAATAAG 59.591 52.381 0.00 0.00 0.00 1.73
2559 6451 1.136305 CACGGGCGAGAGGAAGAATAA 59.864 52.381 0.00 0.00 0.00 1.40
2560 6452 0.744874 CACGGGCGAGAGGAAGAATA 59.255 55.000 0.00 0.00 0.00 1.75
2561 6453 1.258445 ACACGGGCGAGAGGAAGAAT 61.258 55.000 0.00 0.00 0.00 2.40
2562 6454 1.469335 AACACGGGCGAGAGGAAGAA 61.469 55.000 0.00 0.00 0.00 2.52
2563 6455 1.874345 GAACACGGGCGAGAGGAAGA 61.874 60.000 0.00 0.00 0.00 2.87
2564 6456 1.446272 GAACACGGGCGAGAGGAAG 60.446 63.158 0.00 0.00 0.00 3.46
2565 6457 1.541310 ATGAACACGGGCGAGAGGAA 61.541 55.000 0.00 0.00 0.00 3.36
2566 6458 0.681887 TATGAACACGGGCGAGAGGA 60.682 55.000 0.00 0.00 0.00 3.71
2567 6459 0.174845 TTATGAACACGGGCGAGAGG 59.825 55.000 0.00 0.00 0.00 3.69
2568 6460 2.128035 GATTATGAACACGGGCGAGAG 58.872 52.381 0.00 0.00 0.00 3.20
2569 6461 1.478916 TGATTATGAACACGGGCGAGA 59.521 47.619 0.00 0.00 0.00 4.04
2570 6462 1.860950 CTGATTATGAACACGGGCGAG 59.139 52.381 0.00 0.00 0.00 5.03
2571 6463 1.934589 CTGATTATGAACACGGGCGA 58.065 50.000 0.00 0.00 0.00 5.54
2572 6464 0.304705 GCTGATTATGAACACGGGCG 59.695 55.000 0.00 0.00 0.00 6.13
2573 6465 1.668419 AGCTGATTATGAACACGGGC 58.332 50.000 0.00 0.00 0.00 6.13
2574 6466 2.614057 GGAAGCTGATTATGAACACGGG 59.386 50.000 0.00 0.00 0.00 5.28
2575 6467 2.285220 CGGAAGCTGATTATGAACACGG 59.715 50.000 0.00 0.00 0.00 4.94
2576 6468 2.930040 ACGGAAGCTGATTATGAACACG 59.070 45.455 0.00 0.00 0.00 4.49
2577 6469 3.932710 TGACGGAAGCTGATTATGAACAC 59.067 43.478 0.00 0.00 0.00 3.32
2578 6470 4.200838 TGACGGAAGCTGATTATGAACA 57.799 40.909 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.