Multiple sequence alignment - TraesCS2B01G545700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G545700 chr2B 100.000 6567 0 0 1 6567 742529873 742523307 0.000000e+00 12128.0
1 TraesCS2B01G545700 chr2B 93.525 139 8 1 4923 5061 353573460 353573597 8.630000e-49 206.0
2 TraesCS2B01G545700 chr2B 92.361 144 9 2 4928 5070 743724005 743723863 3.100000e-48 204.0
3 TraesCS2B01G545700 chr2D 94.466 4192 114 54 799 4935 608776780 608772652 0.000000e+00 6348.0
4 TraesCS2B01G545700 chr2D 86.883 1418 71 56 74 1415 608777530 608776152 0.000000e+00 1482.0
5 TraesCS2B01G545700 chr2D 91.226 889 47 18 5058 5930 608772655 608771782 0.000000e+00 1181.0
6 TraesCS2B01G545700 chr2D 91.813 171 12 2 6088 6257 83081731 83081900 3.060000e-58 237.0
7 TraesCS2B01G545700 chr2D 91.379 174 14 1 6085 6257 309971413 309971586 3.060000e-58 237.0
8 TraesCS2B01G545700 chr2D 93.056 144 6 4 4925 5067 619720681 619720541 2.400000e-49 207.0
9 TraesCS2B01G545700 chr2D 92.958 142 7 3 4923 5063 98995533 98995672 3.100000e-48 204.0
10 TraesCS2B01G545700 chr2A 88.011 2569 160 70 799 3289 740384341 740381843 0.000000e+00 2902.0
11 TraesCS2B01G545700 chr2A 94.194 1705 64 17 3257 4935 740381843 740380148 0.000000e+00 2567.0
12 TraesCS2B01G545700 chr2A 87.845 905 74 19 5116 6015 740379833 740378960 0.000000e+00 1029.0
13 TraesCS2B01G545700 chr2A 82.517 755 70 28 88 801 740385108 740384375 2.030000e-169 606.0
14 TraesCS2B01G545700 chr2A 89.068 311 26 4 6260 6567 740378626 740378321 4.810000e-101 379.0
15 TraesCS2B01G545700 chr2A 93.103 58 4 0 1 58 16711779 16711722 1.170000e-12 86.1
16 TraesCS2B01G545700 chr2A 100.000 43 0 0 6038 6080 740378964 740378922 5.460000e-11 80.5
17 TraesCS2B01G545700 chr1D 93.373 166 10 1 6091 6255 206955537 206955702 1.830000e-60 244.0
18 TraesCS2B01G545700 chr1D 92.771 166 11 1 6087 6251 456171701 456171866 8.510000e-59 239.0
19 TraesCS2B01G545700 chr1D 91.228 171 14 1 6088 6257 121437330 121437160 1.420000e-56 231.0
20 TraesCS2B01G545700 chr3D 92.262 168 12 1 6091 6257 533275687 533275854 3.060000e-58 237.0
21 TraesCS2B01G545700 chr3D 91.228 171 14 1 6085 6254 4171287 4171117 1.420000e-56 231.0
22 TraesCS2B01G545700 chr3D 92.958 142 7 3 4925 5064 460417833 460417973 3.100000e-48 204.0
23 TraesCS2B01G545700 chr7D 91.667 168 13 1 6088 6254 556782717 556782884 1.420000e-56 231.0
24 TraesCS2B01G545700 chr5B 91.228 171 13 2 6086 6254 615694772 615694602 1.420000e-56 231.0
25 TraesCS2B01G545700 chr5B 94.828 58 3 0 1 58 673275134 673275191 2.520000e-14 91.6
26 TraesCS2B01G545700 chr7B 93.662 142 6 3 4925 5065 639040511 639040372 6.670000e-50 209.0
27 TraesCS2B01G545700 chr7B 88.889 171 13 5 4911 5081 720120734 720120570 8.630000e-49 206.0
28 TraesCS2B01G545700 chr7B 96.226 53 2 0 6 58 107643693 107643745 3.260000e-13 87.9
29 TraesCS2B01G545700 chr7A 94.203 138 7 1 4927 5064 504961056 504961192 6.670000e-50 209.0
30 TraesCS2B01G545700 chr7A 91.379 58 5 0 1 58 73760321 73760264 5.460000e-11 80.5
31 TraesCS2B01G545700 chr6B 94.815 135 6 1 4927 5061 207511034 207510901 6.670000e-50 209.0
32 TraesCS2B01G545700 chr4A 93.007 143 9 1 4932 5074 223857833 223857974 2.400000e-49 207.0
33 TraesCS2B01G545700 chr4A 94.828 58 3 0 1 58 292429528 292429585 2.520000e-14 91.6
34 TraesCS2B01G545700 chr3A 94.161 137 7 1 4926 5062 736073307 736073172 2.400000e-49 207.0
35 TraesCS2B01G545700 chr3A 94.828 58 3 0 1 58 412849185 412849128 2.520000e-14 91.6
36 TraesCS2B01G545700 chr3A 93.103 58 4 0 1 58 687031423 687031366 1.170000e-12 86.1
37 TraesCS2B01G545700 chr3A 91.379 58 5 0 1 58 642136238 642136295 5.460000e-11 80.5
38 TraesCS2B01G545700 chr1B 92.908 141 9 1 4923 5063 674074500 674074361 3.100000e-48 204.0
39 TraesCS2B01G545700 chr5A 92.308 143 10 1 4920 5062 56313077 56313218 1.120000e-47 202.0
40 TraesCS2B01G545700 chr5A 94.828 58 3 0 1 58 642761780 642761723 2.520000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G545700 chr2B 742523307 742529873 6566 True 12128.000000 12128 100.000000 1 6567 1 chr2B.!!$R1 6566
1 TraesCS2B01G545700 chr2D 608771782 608777530 5748 True 3003.666667 6348 90.858333 74 5930 3 chr2D.!!$R2 5856
2 TraesCS2B01G545700 chr2A 740378321 740385108 6787 True 1260.583333 2902 90.272500 88 6567 6 chr2A.!!$R2 6479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 1115 0.179097 GTGATTGGAGTCGGAGAGGC 60.179 60.0 0.00 0.00 36.95 4.70 F
1595 1781 0.034089 ATGACAGTTTAGGGCAGGCC 60.034 55.0 4.33 4.33 0.00 5.19 F
1598 1784 0.409484 ACAGTTTAGGGCAGGCCAAT 59.591 50.0 16.94 4.38 37.98 3.16 F
3316 3577 0.326264 GTGAGGGTCCATGTGCTTCT 59.674 55.0 0.00 0.00 0.00 2.85 F
4613 4901 1.059913 AGGTGCACCTTGAGCTAGTT 58.940 50.0 33.20 6.87 46.09 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1794 1987 0.613260 CCGGGGATTCAGTCACAGAA 59.387 55.000 0.0 0.0 29.12 3.02 R
3203 3430 0.258484 CACCATATGCCCCTTGGTCA 59.742 55.000 0.0 0.0 41.77 4.02 R
3424 3685 4.897509 TCACCTATATGGCAGGAGAATG 57.102 45.455 0.0 0.0 40.22 2.67 R
4761 5049 0.831307 AGAACCCCTCGCAGGATAAC 59.169 55.000 4.0 0.0 37.67 1.89 R
6010 6580 0.040157 CGGACCACAGTTGTTGCATG 60.040 55.000 0.0 0.0 0.00 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 7.619512 ACTAGTTTAATCCTTATAGCCTGCT 57.380 36.000 0.00 0.00 0.00 4.24
38 39 7.445945 ACTAGTTTAATCCTTATAGCCTGCTG 58.554 38.462 0.97 0.00 0.00 4.41
39 40 6.500589 AGTTTAATCCTTATAGCCTGCTGA 57.499 37.500 0.97 0.00 0.00 4.26
40 41 6.292150 AGTTTAATCCTTATAGCCTGCTGAC 58.708 40.000 0.97 0.00 0.00 3.51
41 42 6.100424 AGTTTAATCCTTATAGCCTGCTGACT 59.900 38.462 0.97 0.00 0.00 3.41
42 43 4.615588 AATCCTTATAGCCTGCTGACTC 57.384 45.455 0.97 0.00 0.00 3.36
43 44 3.032265 TCCTTATAGCCTGCTGACTCA 57.968 47.619 0.97 0.00 0.00 3.41
44 45 2.961741 TCCTTATAGCCTGCTGACTCAG 59.038 50.000 0.97 1.21 34.12 3.35
83 84 1.687123 ACTTGCTCTTACACGTCCTGT 59.313 47.619 0.00 0.00 36.82 4.00
93 94 5.298527 TCTTACACGTCCTGTATACTCCATG 59.701 44.000 4.17 0.00 35.18 3.66
173 179 2.676471 GTGAACCTTGCGCCCCAT 60.676 61.111 4.18 0.00 0.00 4.00
263 277 4.997395 GTGTTTGATCATACACCAGTGACT 59.003 41.667 28.84 0.00 37.32 3.41
403 437 9.787435 AAAATATTTAAACCCCAAGAAACTTCC 57.213 29.630 0.01 0.00 0.00 3.46
415 449 1.335810 GAAACTTCCAACCACGGAACC 59.664 52.381 0.00 0.00 40.20 3.62
431 465 1.530013 AACCAGAACCGATCCGTCGT 61.530 55.000 0.00 0.00 46.25 4.34
438 472 3.900892 CGATCCGTCGTCCCCCAG 61.901 72.222 0.00 0.00 42.78 4.45
443 477 2.738480 CGTCGTCCCCCAGAAACA 59.262 61.111 0.00 0.00 0.00 2.83
455 490 1.531602 AGAAACAGCAAGCCCCACC 60.532 57.895 0.00 0.00 0.00 4.61
462 497 4.994756 CAAGCCCCACCCCACACC 62.995 72.222 0.00 0.00 0.00 4.16
487 522 4.776322 CCGCCGCTCCACCATCAA 62.776 66.667 0.00 0.00 0.00 2.57
488 523 2.745884 CGCCGCTCCACCATCAAA 60.746 61.111 0.00 0.00 0.00 2.69
490 525 3.039202 GCCGCTCCACCATCAAACG 62.039 63.158 0.00 0.00 0.00 3.60
492 527 2.877691 GCTCCACCATCAAACGCC 59.122 61.111 0.00 0.00 0.00 5.68
493 528 3.039202 GCTCCACCATCAAACGCCG 62.039 63.158 0.00 0.00 0.00 6.46
495 530 4.114997 CCACCATCAAACGCCGCC 62.115 66.667 0.00 0.00 0.00 6.13
497 532 4.652131 ACCATCAAACGCCGCCCA 62.652 61.111 0.00 0.00 0.00 5.36
498 533 3.369400 CCATCAAACGCCGCCCAA 61.369 61.111 0.00 0.00 0.00 4.12
565 616 4.918360 ACCCCACCCCAGCTCACA 62.918 66.667 0.00 0.00 0.00 3.58
566 617 4.351054 CCCCACCCCAGCTCACAC 62.351 72.222 0.00 0.00 0.00 3.82
567 618 3.569210 CCCACCCCAGCTCACACA 61.569 66.667 0.00 0.00 0.00 3.72
568 619 2.515398 CCACCCCAGCTCACACAA 59.485 61.111 0.00 0.00 0.00 3.33
587 638 4.889856 TCGCACGCCATCCCATCG 62.890 66.667 0.00 0.00 0.00 3.84
609 673 2.124570 CCATCCCACCTGGCGAAG 60.125 66.667 0.00 0.00 0.00 3.79
638 702 1.228657 AAAACAGTTCTCTCGCCGGC 61.229 55.000 19.07 19.07 0.00 6.13
699 764 3.497879 CCAAACCGGGATCGCTTC 58.502 61.111 6.32 0.00 34.56 3.86
752 817 3.541632 TCCACATTTCTCCGCCTATTTC 58.458 45.455 0.00 0.00 0.00 2.17
753 818 2.287915 CCACATTTCTCCGCCTATTTCG 59.712 50.000 0.00 0.00 0.00 3.46
754 819 2.936498 CACATTTCTCCGCCTATTTCGT 59.064 45.455 0.00 0.00 0.00 3.85
755 820 3.374058 CACATTTCTCCGCCTATTTCGTT 59.626 43.478 0.00 0.00 0.00 3.85
756 821 3.621715 ACATTTCTCCGCCTATTTCGTTC 59.378 43.478 0.00 0.00 0.00 3.95
785 854 2.224305 CCGTGGTCTTTCAAACTCCTCT 60.224 50.000 0.00 0.00 0.00 3.69
940 1065 3.869272 CCAGATGCGCGTTGCCTC 61.869 66.667 8.43 0.00 45.60 4.70
969 1106 1.302511 GCGTGGTGGTGATTGGAGT 60.303 57.895 0.00 0.00 0.00 3.85
971 1108 1.014044 CGTGGTGGTGATTGGAGTCG 61.014 60.000 0.00 0.00 0.00 4.18
972 1109 0.673644 GTGGTGGTGATTGGAGTCGG 60.674 60.000 0.00 0.00 0.00 4.79
973 1110 0.834261 TGGTGGTGATTGGAGTCGGA 60.834 55.000 0.00 0.00 0.00 4.55
978 1115 0.179097 GTGATTGGAGTCGGAGAGGC 60.179 60.000 0.00 0.00 36.95 4.70
981 1118 2.856039 ATTGGAGTCGGAGAGGCGGA 62.856 60.000 0.00 0.00 36.95 5.54
982 1119 3.213402 GGAGTCGGAGAGGCGGAG 61.213 72.222 0.00 0.00 36.95 4.63
1138 1277 2.652113 CCCCTTCCTCCCTCTCCCT 61.652 68.421 0.00 0.00 0.00 4.20
1352 1533 2.990740 AGGTTTTGGCTTATGTGGGA 57.009 45.000 0.00 0.00 0.00 4.37
1353 1534 3.473113 AGGTTTTGGCTTATGTGGGAT 57.527 42.857 0.00 0.00 0.00 3.85
1436 1619 4.695455 GTCACATACACCACATTAGCTTGT 59.305 41.667 0.00 0.00 0.00 3.16
1437 1620 5.872617 GTCACATACACCACATTAGCTTGTA 59.127 40.000 0.00 0.00 0.00 2.41
1475 1658 1.142870 CTCATTTTGGGGCCCTCGATA 59.857 52.381 25.93 7.41 0.00 2.92
1476 1659 1.566703 TCATTTTGGGGCCCTCGATAA 59.433 47.619 25.93 6.08 0.00 1.75
1477 1660 1.956477 CATTTTGGGGCCCTCGATAAG 59.044 52.381 25.93 2.74 0.00 1.73
1478 1661 0.395173 TTTTGGGGCCCTCGATAAGC 60.395 55.000 25.93 1.93 0.00 3.09
1484 1667 2.029838 GGCCCTCGATAAGCCATATG 57.970 55.000 13.86 0.00 46.34 1.78
1485 1668 1.407437 GGCCCTCGATAAGCCATATGG 60.407 57.143 18.07 18.07 46.34 2.74
1486 1669 1.555075 GCCCTCGATAAGCCATATGGA 59.445 52.381 26.47 4.86 37.39 3.41
1487 1670 2.171448 GCCCTCGATAAGCCATATGGAT 59.829 50.000 26.47 17.58 37.39 3.41
1488 1671 3.388024 GCCCTCGATAAGCCATATGGATA 59.612 47.826 26.47 16.79 37.39 2.59
1489 1672 4.040952 GCCCTCGATAAGCCATATGGATAT 59.959 45.833 26.47 20.47 37.39 1.63
1490 1673 5.455326 GCCCTCGATAAGCCATATGGATATT 60.455 44.000 26.47 17.29 37.39 1.28
1491 1674 5.994054 CCCTCGATAAGCCATATGGATATTG 59.006 44.000 26.47 22.24 37.39 1.90
1492 1675 6.408548 CCCTCGATAAGCCATATGGATATTGT 60.409 42.308 26.47 13.77 37.39 2.71
1518 1701 0.108945 GCTCAATGGCAAGTGCTTCC 60.109 55.000 2.85 0.00 41.70 3.46
1588 1774 3.309682 CACCGTGCATATGACAGTTTAGG 59.690 47.826 6.97 5.71 0.00 2.69
1595 1781 0.034089 ATGACAGTTTAGGGCAGGCC 60.034 55.000 4.33 4.33 0.00 5.19
1598 1784 0.409484 ACAGTTTAGGGCAGGCCAAT 59.591 50.000 16.94 4.38 37.98 3.16
1599 1785 1.203174 ACAGTTTAGGGCAGGCCAATT 60.203 47.619 16.94 0.00 37.98 2.32
1602 1788 2.042433 AGTTTAGGGCAGGCCAATTGTA 59.958 45.455 16.94 0.00 37.98 2.41
1636 1822 6.011981 TGGGGTCACTTCTATATCACCTTTTT 60.012 38.462 0.00 0.00 0.00 1.94
1775 1968 3.582208 GAGATAGGCCTTCATGTCCATCT 59.418 47.826 12.58 10.73 0.00 2.90
1794 1987 2.707257 TCTTAAACTTGGACCCCTTCGT 59.293 45.455 0.00 0.00 0.00 3.85
1899 2092 6.228258 TGCTACTTTCTCTAAAATGACGGTT 58.772 36.000 0.00 0.00 0.00 4.44
1928 2121 0.798776 CGCAAGTTACTTCCAGGCAG 59.201 55.000 0.00 0.00 0.00 4.85
1932 2125 0.615850 AGTTACTTCCAGGCAGCCTC 59.384 55.000 12.53 0.00 0.00 4.70
1984 2177 6.603095 CAGCAAAAGGTATACACACTTCTTC 58.397 40.000 5.01 0.00 0.00 2.87
2005 2198 3.517100 TCAGCAATCTCTGGTTAGCTCTT 59.483 43.478 0.00 0.00 34.91 2.85
2006 2199 4.019860 TCAGCAATCTCTGGTTAGCTCTTT 60.020 41.667 0.00 0.00 34.91 2.52
2007 2200 5.187772 TCAGCAATCTCTGGTTAGCTCTTTA 59.812 40.000 0.00 0.00 34.91 1.85
2008 2201 5.523188 CAGCAATCTCTGGTTAGCTCTTTAG 59.477 44.000 0.00 0.00 31.85 1.85
2011 2204 9.635155 AGCAATCTCTGGTTAGCTCTTTAGCAA 62.635 40.741 0.00 0.00 41.53 3.91
2054 2248 8.421279 ATGTATTCATGTGTGCAATTATGCAGC 61.421 37.037 3.35 1.49 46.77 5.25
2137 2331 1.134220 TCCCATGTATCCTGAAACCGC 60.134 52.381 0.00 0.00 0.00 5.68
2368 2562 7.620094 AGGTATATTCAAACTACCTCTCACTGT 59.380 37.037 0.00 0.00 41.01 3.55
2369 2563 8.258708 GGTATATTCAAACTACCTCTCACTGTT 58.741 37.037 0.00 0.00 33.57 3.16
2370 2564 9.654663 GTATATTCAAACTACCTCTCACTGTTT 57.345 33.333 0.00 0.00 0.00 2.83
2371 2565 8.779354 ATATTCAAACTACCTCTCACTGTTTC 57.221 34.615 0.00 0.00 0.00 2.78
2372 2566 4.957296 TCAAACTACCTCTCACTGTTTCC 58.043 43.478 0.00 0.00 0.00 3.13
2373 2567 4.654262 TCAAACTACCTCTCACTGTTTCCT 59.346 41.667 0.00 0.00 0.00 3.36
2374 2568 4.608948 AACTACCTCTCACTGTTTCCTG 57.391 45.455 0.00 0.00 0.00 3.86
2528 2722 5.479027 GCAAAGGAGACATTAACCCCTTAAA 59.521 40.000 0.00 0.00 36.31 1.52
2850 3075 4.784838 TCATATAGCCTGACCCAATATGCT 59.215 41.667 0.00 0.00 32.84 3.79
3030 3255 7.717436 TGTCTTTGTCTTTGGTCATGTTGTATA 59.283 33.333 0.00 0.00 0.00 1.47
3130 3355 9.088512 GTTGAATTATGAATCAGTCGTCTTACT 57.911 33.333 0.00 0.00 0.00 2.24
3316 3577 0.326264 GTGAGGGTCCATGTGCTTCT 59.674 55.000 0.00 0.00 0.00 2.85
3340 3601 8.135529 TCTGTTGGATAGTGATAGTGTTAATCG 58.864 37.037 0.00 0.00 0.00 3.34
3424 3685 9.535878 CCTTATCACTTCTTCCATAGTTCTAAC 57.464 37.037 0.00 0.00 0.00 2.34
3740 4003 2.969443 ACGCTTGTGTTTCATAGCAC 57.031 45.000 0.00 0.00 33.27 4.40
3925 4207 9.628500 ATTTTTCCTGGTTAGATAATAGTGTCC 57.372 33.333 0.00 0.00 0.00 4.02
3930 4212 7.508296 TCCTGGTTAGATAATAGTGTCCCTAAC 59.492 40.741 0.00 0.00 36.76 2.34
4285 4567 4.627467 AGCGTGACAGTCAAGATTTATGAC 59.373 41.667 19.49 0.00 45.94 3.06
4613 4901 1.059913 AGGTGCACCTTGAGCTAGTT 58.940 50.000 33.20 6.87 46.09 2.24
4761 5049 5.555017 TGTCATCAAGGAAGAGAAAGGAAG 58.445 41.667 0.00 0.00 0.00 3.46
4929 5219 8.405531 TCAGATATAGCATTGCCAGTTTTTAAC 58.594 33.333 4.70 0.00 0.00 2.01
4935 5225 6.909909 AGCATTGCCAGTTTTTAACTAGTAC 58.090 36.000 4.70 0.00 40.46 2.73
4936 5226 6.715264 AGCATTGCCAGTTTTTAACTAGTACT 59.285 34.615 4.70 0.00 40.46 2.73
4937 5227 7.021790 GCATTGCCAGTTTTTAACTAGTACTC 58.978 38.462 0.00 0.00 40.46 2.59
4938 5228 7.527457 CATTGCCAGTTTTTAACTAGTACTCC 58.473 38.462 0.00 0.00 40.46 3.85
4939 5229 5.554070 TGCCAGTTTTTAACTAGTACTCCC 58.446 41.667 0.00 0.00 40.46 4.30
4940 5230 5.308759 TGCCAGTTTTTAACTAGTACTCCCT 59.691 40.000 0.00 0.00 40.46 4.20
4941 5231 5.873712 GCCAGTTTTTAACTAGTACTCCCTC 59.126 44.000 0.00 0.00 40.46 4.30
4942 5232 6.295745 GCCAGTTTTTAACTAGTACTCCCTCT 60.296 42.308 0.00 0.00 40.46 3.69
4943 5233 7.097834 CCAGTTTTTAACTAGTACTCCCTCTG 58.902 42.308 0.00 0.81 40.46 3.35
4944 5234 7.256225 CCAGTTTTTAACTAGTACTCCCTCTGT 60.256 40.741 0.00 0.00 40.46 3.41
4945 5235 7.813627 CAGTTTTTAACTAGTACTCCCTCTGTC 59.186 40.741 0.00 0.00 40.46 3.51
4946 5236 6.847421 TTTTAACTAGTACTCCCTCTGTCC 57.153 41.667 0.00 0.00 0.00 4.02
4947 5237 2.713863 ACTAGTACTCCCTCTGTCCG 57.286 55.000 0.00 0.00 0.00 4.79
4948 5238 1.212441 ACTAGTACTCCCTCTGTCCGG 59.788 57.143 0.00 0.00 0.00 5.14
4949 5239 1.489649 CTAGTACTCCCTCTGTCCGGA 59.510 57.143 0.00 0.00 0.00 5.14
4950 5240 0.702902 AGTACTCCCTCTGTCCGGAA 59.297 55.000 5.23 0.00 0.00 4.30
4951 5241 1.076677 AGTACTCCCTCTGTCCGGAAA 59.923 52.381 5.23 0.00 0.00 3.13
4952 5242 2.108970 GTACTCCCTCTGTCCGGAAAT 58.891 52.381 5.23 0.00 0.00 2.17
4953 5243 2.544844 ACTCCCTCTGTCCGGAAATA 57.455 50.000 5.23 0.00 0.00 1.40
4954 5244 2.108970 ACTCCCTCTGTCCGGAAATAC 58.891 52.381 5.23 0.00 0.00 1.89
4955 5245 2.292323 ACTCCCTCTGTCCGGAAATACT 60.292 50.000 5.23 0.00 0.00 2.12
4956 5246 2.766828 CTCCCTCTGTCCGGAAATACTT 59.233 50.000 5.23 0.00 0.00 2.24
4957 5247 2.500098 TCCCTCTGTCCGGAAATACTTG 59.500 50.000 5.23 0.00 0.00 3.16
4958 5248 2.236395 CCCTCTGTCCGGAAATACTTGT 59.764 50.000 5.23 0.00 0.00 3.16
4959 5249 3.522553 CCTCTGTCCGGAAATACTTGTC 58.477 50.000 5.23 0.00 0.00 3.18
4960 5250 3.056107 CCTCTGTCCGGAAATACTTGTCA 60.056 47.826 5.23 0.00 0.00 3.58
4961 5251 3.921677 TCTGTCCGGAAATACTTGTCAC 58.078 45.455 5.23 0.00 0.00 3.67
4962 5252 3.000727 CTGTCCGGAAATACTTGTCACC 58.999 50.000 5.23 0.00 0.00 4.02
4963 5253 2.369203 TGTCCGGAAATACTTGTCACCA 59.631 45.455 5.23 0.00 0.00 4.17
4964 5254 3.181453 TGTCCGGAAATACTTGTCACCAA 60.181 43.478 5.23 0.00 0.00 3.67
4965 5255 3.816523 GTCCGGAAATACTTGTCACCAAA 59.183 43.478 5.23 0.00 0.00 3.28
4966 5256 4.276431 GTCCGGAAATACTTGTCACCAAAA 59.724 41.667 5.23 0.00 0.00 2.44
4967 5257 5.048294 GTCCGGAAATACTTGTCACCAAAAT 60.048 40.000 5.23 0.00 0.00 1.82
4968 5258 5.048364 TCCGGAAATACTTGTCACCAAAATG 60.048 40.000 0.00 0.00 0.00 2.32
4969 5259 5.160641 CGGAAATACTTGTCACCAAAATGG 58.839 41.667 0.00 0.00 45.02 3.16
4970 5260 5.048364 CGGAAATACTTGTCACCAAAATGGA 60.048 40.000 2.85 0.00 40.96 3.41
4971 5261 6.350110 CGGAAATACTTGTCACCAAAATGGAT 60.350 38.462 2.85 0.00 40.96 3.41
4972 5262 7.148154 CGGAAATACTTGTCACCAAAATGGATA 60.148 37.037 2.85 0.00 40.96 2.59
4973 5263 8.527810 GGAAATACTTGTCACCAAAATGGATAA 58.472 33.333 2.85 0.00 40.96 1.75
4974 5264 9.921637 GAAATACTTGTCACCAAAATGGATAAA 57.078 29.630 2.85 0.00 40.96 1.40
4976 5266 9.927668 AATACTTGTCACCAAAATGGATAAAAG 57.072 29.630 2.85 4.20 40.96 2.27
4977 5267 6.758254 ACTTGTCACCAAAATGGATAAAAGG 58.242 36.000 2.85 0.00 40.96 3.11
4978 5268 6.553100 ACTTGTCACCAAAATGGATAAAAGGA 59.447 34.615 2.85 0.00 40.96 3.36
4979 5269 6.588719 TGTCACCAAAATGGATAAAAGGAG 57.411 37.500 2.85 0.00 40.96 3.69
4980 5270 6.310941 TGTCACCAAAATGGATAAAAGGAGA 58.689 36.000 2.85 0.00 40.96 3.71
4981 5271 6.953520 TGTCACCAAAATGGATAAAAGGAGAT 59.046 34.615 2.85 0.00 40.96 2.75
4982 5272 7.093814 TGTCACCAAAATGGATAAAAGGAGATG 60.094 37.037 2.85 0.00 40.96 2.90
4983 5273 6.953520 TCACCAAAATGGATAAAAGGAGATGT 59.046 34.615 2.85 0.00 40.96 3.06
4984 5274 8.112822 TCACCAAAATGGATAAAAGGAGATGTA 58.887 33.333 2.85 0.00 40.96 2.29
4985 5275 8.917088 CACCAAAATGGATAAAAGGAGATGTAT 58.083 33.333 2.85 0.00 40.96 2.29
4986 5276 9.136323 ACCAAAATGGATAAAAGGAGATGTATC 57.864 33.333 2.85 0.00 40.96 2.24
4987 5277 9.359653 CCAAAATGGATAAAAGGAGATGTATCT 57.640 33.333 0.00 0.00 40.96 1.98
4993 5283 9.607333 TGGATAAAAGGAGATGTATCTAGATGT 57.393 33.333 15.79 1.25 37.25 3.06
5049 5339 9.443323 TCTATTTTGATGACAAGTATTTTCGGA 57.557 29.630 0.00 0.00 37.32 4.55
5050 5340 9.490663 CTATTTTGATGACAAGTATTTTCGGAC 57.509 33.333 0.00 0.00 37.32 4.79
5051 5341 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
5052 5342 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
5053 5343 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
5054 5344 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
5055 5345 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
5056 5346 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
5181 5739 0.877071 CACTGTTCCTGTCATGTGCC 59.123 55.000 0.00 0.00 0.00 5.01
5185 5743 1.374125 TTCCTGTCATGTGCCGACG 60.374 57.895 0.00 0.00 36.11 5.12
5267 5825 3.894759 AGATGGCTTACATGACATGCTT 58.105 40.909 15.49 0.00 40.72 3.91
5324 5882 7.873505 AGTAGAGTAAGTTCAATCGAAGCTTTT 59.126 33.333 0.00 0.00 0.00 2.27
5328 5886 8.547967 AGTAAGTTCAATCGAAGCTTTTATCA 57.452 30.769 0.00 0.00 0.00 2.15
5380 5939 4.517285 ACTGCGATATGGTCTCATGTTTT 58.483 39.130 0.00 0.00 34.96 2.43
5381 5940 4.943705 ACTGCGATATGGTCTCATGTTTTT 59.056 37.500 0.00 0.00 34.96 1.94
5382 5941 5.163723 ACTGCGATATGGTCTCATGTTTTTG 60.164 40.000 0.00 0.00 34.96 2.44
5383 5942 4.037690 GCGATATGGTCTCATGTTTTTGC 58.962 43.478 0.00 0.00 34.96 3.68
5386 5945 5.684184 CGATATGGTCTCATGTTTTTGCATG 59.316 40.000 0.00 0.00 45.48 4.06
5387 5946 4.877378 ATGGTCTCATGTTTTTGCATGT 57.123 36.364 6.04 0.00 44.68 3.21
5388 5947 4.241590 TGGTCTCATGTTTTTGCATGTC 57.758 40.909 6.04 0.00 44.68 3.06
5390 5949 4.099113 TGGTCTCATGTTTTTGCATGTCAA 59.901 37.500 6.04 0.00 44.68 3.18
5437 5999 1.003355 ACGGTGCATCCTGACCTTG 60.003 57.895 0.00 0.00 0.00 3.61
5440 6002 0.036732 GGTGCATCCTGACCTTGACA 59.963 55.000 0.00 0.00 0.00 3.58
5461 6023 5.130350 ACAAAGGTTTTGATCGAAGAGGAA 58.870 37.500 8.41 0.00 43.63 3.36
5470 6032 3.889538 TGATCGAAGAGGAATACACCGAT 59.110 43.478 0.00 0.00 43.63 4.18
5645 6209 1.040339 TTGGGTTGACTGTTGGCCAC 61.040 55.000 3.88 0.75 0.00 5.01
5680 6246 2.151502 TGAAAACAAGCTGGGGTTCA 57.848 45.000 4.95 4.95 0.00 3.18
5685 6255 0.550914 ACAAGCTGGGGTTCAGTCAA 59.449 50.000 0.00 0.00 45.08 3.18
5705 6275 8.918658 CAGTCAATCATTTTTCAGGTGTAAATG 58.081 33.333 0.00 0.00 39.46 2.32
5708 6278 8.428063 TCAATCATTTTTCAGGTGTAAATGGTT 58.572 29.630 14.52 12.49 41.04 3.67
5723 6293 2.074729 TGGTTTCCCATGGTTTCGTT 57.925 45.000 11.73 0.00 35.17 3.85
5729 6299 2.501650 CATGGTTTCGTTGCGGCG 60.502 61.111 0.51 0.51 0.00 6.46
5730 6300 4.398598 ATGGTTTCGTTGCGGCGC 62.399 61.111 27.44 27.44 0.00 6.53
5733 6303 4.007940 GTTTCGTTGCGGCGCAGA 62.008 61.111 34.19 25.86 40.61 4.26
5734 6304 3.047280 TTTCGTTGCGGCGCAGAT 61.047 55.556 34.19 0.00 40.61 2.90
5741 6311 4.619140 GCGGCGCAGATTCATGGC 62.619 66.667 29.21 0.00 0.00 4.40
5785 6355 2.221169 GGCAGTGACAGTGATCAAACA 58.779 47.619 14.64 0.00 0.00 2.83
5799 6369 8.137437 CAGTGATCAAACAGTGTTTAATTTCCT 58.863 33.333 20.47 9.81 36.72 3.36
5800 6370 8.695456 AGTGATCAAACAGTGTTTAATTTCCTT 58.305 29.630 20.47 1.28 0.00 3.36
5801 6371 9.959749 GTGATCAAACAGTGTTTAATTTCCTTA 57.040 29.630 20.47 0.00 0.00 2.69
5823 6393 2.226330 TGTAACGCCATGCTTCAAAGT 58.774 42.857 0.00 0.00 0.00 2.66
5861 6431 3.904136 AGAAACAAATTCAGCTCGTGG 57.096 42.857 0.00 0.00 40.72 4.94
5881 6451 1.388547 GGGCAATCGTGGATGCTTTA 58.611 50.000 0.00 0.00 0.00 1.85
5889 6459 4.471904 TCGTGGATGCTTTATCACTCTT 57.528 40.909 0.00 0.00 37.54 2.85
5898 6468 7.548780 GGATGCTTTATCACTCTTATGAGGATC 59.451 40.741 10.16 0.00 37.27 3.36
5899 6469 7.609097 TGCTTTATCACTCTTATGAGGATCT 57.391 36.000 10.16 0.00 44.29 2.75
5931 6501 5.185442 TGTTCTTAGATGCAAAATCATGCCA 59.815 36.000 0.00 0.00 45.83 4.92
5938 6508 5.708230 AGATGCAAAATCATGCCATGTTTTT 59.292 32.000 16.85 16.85 45.83 1.94
5950 6520 0.525761 ATGTTTTTGGTGCCGGATCG 59.474 50.000 5.05 0.00 0.00 3.69
5957 6527 2.509786 GTGCCGGATCGCGGTTTA 60.510 61.111 19.53 7.87 0.00 2.01
5965 6535 2.729882 CGGATCGCGGTTTATAGAAAGG 59.270 50.000 6.13 0.00 0.00 3.11
5967 6537 1.944032 TCGCGGTTTATAGAAAGGCC 58.056 50.000 6.13 0.00 0.00 5.19
5968 6538 0.580104 CGCGGTTTATAGAAAGGCCG 59.420 55.000 0.00 7.34 37.29 6.13
5971 6541 1.329599 CGGTTTATAGAAAGGCCGTGC 59.670 52.381 0.00 0.00 32.33 5.34
5986 6556 0.179084 CGTGCCGATTGGGTCATAGT 60.179 55.000 0.00 0.00 38.44 2.12
5991 6561 2.213499 CCGATTGGGTCATAGTTGCTC 58.787 52.381 0.00 0.00 0.00 4.26
5996 6566 1.476891 TGGGTCATAGTTGCTCTCGTC 59.523 52.381 0.00 0.00 0.00 4.20
6007 6577 1.337071 TGCTCTCGTCGTCTGAAGTTT 59.663 47.619 0.00 0.00 0.00 2.66
6008 6578 1.716581 GCTCTCGTCGTCTGAAGTTTG 59.283 52.381 0.00 0.00 0.00 2.93
6009 6579 2.604855 GCTCTCGTCGTCTGAAGTTTGA 60.605 50.000 0.00 0.00 0.00 2.69
6010 6580 2.974536 CTCTCGTCGTCTGAAGTTTGAC 59.025 50.000 0.00 1.33 0.00 3.18
6011 6581 2.356695 TCTCGTCGTCTGAAGTTTGACA 59.643 45.455 9.56 0.00 33.18 3.58
6012 6582 3.004419 TCTCGTCGTCTGAAGTTTGACAT 59.996 43.478 9.56 0.00 33.18 3.06
6013 6583 3.049912 TCGTCGTCTGAAGTTTGACATG 58.950 45.455 9.56 0.00 33.18 3.21
6014 6584 2.410262 CGTCGTCTGAAGTTTGACATGC 60.410 50.000 0.00 0.00 33.18 4.06
6015 6585 2.543848 GTCGTCTGAAGTTTGACATGCA 59.456 45.455 0.00 0.00 33.18 3.96
6016 6586 3.002246 GTCGTCTGAAGTTTGACATGCAA 59.998 43.478 0.00 0.00 33.18 4.08
6017 6587 3.002246 TCGTCTGAAGTTTGACATGCAAC 59.998 43.478 0.00 0.00 35.91 4.17
6018 6588 3.242706 CGTCTGAAGTTTGACATGCAACA 60.243 43.478 0.00 0.00 35.91 3.33
6019 6589 4.671377 GTCTGAAGTTTGACATGCAACAA 58.329 39.130 0.00 0.00 35.91 2.83
6020 6590 4.500477 GTCTGAAGTTTGACATGCAACAAC 59.500 41.667 0.00 0.00 35.91 3.32
6021 6591 4.398988 TCTGAAGTTTGACATGCAACAACT 59.601 37.500 0.00 0.00 35.91 3.16
6022 6592 4.422840 TGAAGTTTGACATGCAACAACTG 58.577 39.130 0.00 0.00 35.91 3.16
6023 6593 4.082300 TGAAGTTTGACATGCAACAACTGT 60.082 37.500 0.00 0.00 35.91 3.55
6024 6594 3.772932 AGTTTGACATGCAACAACTGTG 58.227 40.909 0.00 0.00 35.91 3.66
6025 6595 2.859538 GTTTGACATGCAACAACTGTGG 59.140 45.455 0.00 0.00 35.91 4.17
6026 6596 1.761449 TGACATGCAACAACTGTGGT 58.239 45.000 0.00 0.00 0.00 4.16
6027 6597 1.675483 TGACATGCAACAACTGTGGTC 59.325 47.619 0.00 0.00 0.00 4.02
6028 6598 1.001378 GACATGCAACAACTGTGGTCC 60.001 52.381 0.00 0.00 0.00 4.46
6029 6599 0.040157 CATGCAACAACTGTGGTCCG 60.040 55.000 0.00 0.00 0.00 4.79
6030 6600 0.465460 ATGCAACAACTGTGGTCCGT 60.465 50.000 0.00 0.00 0.00 4.69
6031 6601 0.178301 TGCAACAACTGTGGTCCGTA 59.822 50.000 0.00 0.00 0.00 4.02
6032 6602 1.202710 TGCAACAACTGTGGTCCGTAT 60.203 47.619 0.00 0.00 0.00 3.06
6033 6603 2.037381 TGCAACAACTGTGGTCCGTATA 59.963 45.455 0.00 0.00 0.00 1.47
6034 6604 2.414138 GCAACAACTGTGGTCCGTATAC 59.586 50.000 0.00 0.00 0.00 1.47
6035 6605 3.655486 CAACAACTGTGGTCCGTATACA 58.345 45.455 3.32 0.00 0.00 2.29
6036 6606 3.587797 ACAACTGTGGTCCGTATACAG 57.412 47.619 3.32 5.70 45.48 2.74
6079 6649 1.139853 GGCCACTGTCATTCCTAGAGG 59.860 57.143 0.00 0.00 0.00 3.69
6080 6650 1.474143 GCCACTGTCATTCCTAGAGGC 60.474 57.143 0.00 0.00 40.12 4.70
6081 6651 1.833630 CCACTGTCATTCCTAGAGGCA 59.166 52.381 0.00 0.00 34.44 4.75
6082 6652 2.237143 CCACTGTCATTCCTAGAGGCAA 59.763 50.000 0.00 0.00 34.44 4.52
6083 6653 3.529533 CACTGTCATTCCTAGAGGCAAG 58.470 50.000 0.00 0.00 34.44 4.01
6084 6654 3.196469 CACTGTCATTCCTAGAGGCAAGA 59.804 47.826 0.00 0.00 34.44 3.02
6085 6655 3.840666 ACTGTCATTCCTAGAGGCAAGAA 59.159 43.478 0.00 0.00 34.44 2.52
6086 6656 4.287067 ACTGTCATTCCTAGAGGCAAGAAA 59.713 41.667 0.00 0.00 34.44 2.52
6087 6657 5.045286 ACTGTCATTCCTAGAGGCAAGAAAT 60.045 40.000 0.00 0.00 34.44 2.17
6088 6658 6.156949 ACTGTCATTCCTAGAGGCAAGAAATA 59.843 38.462 0.00 0.00 34.44 1.40
6096 6666 5.836358 CCTAGAGGCAAGAAATAGTACTCCT 59.164 44.000 0.00 0.00 0.00 3.69
6100 6670 4.120589 GGCAAGAAATAGTACTCCTTCCG 58.879 47.826 0.00 0.00 0.00 4.30
6105 6675 5.270794 AGAAATAGTACTCCTTCCGTTCCT 58.729 41.667 0.00 0.00 0.00 3.36
6108 6678 7.398332 AGAAATAGTACTCCTTCCGTTCCTAAA 59.602 37.037 0.00 0.00 0.00 1.85
6111 6681 8.953223 ATAGTACTCCTTCCGTTCCTAAATAT 57.047 34.615 0.00 0.00 0.00 1.28
6113 6683 8.087303 AGTACTCCTTCCGTTCCTAAATATTT 57.913 34.615 5.89 5.89 0.00 1.40
6115 6685 6.954232 ACTCCTTCCGTTCCTAAATATTTGA 58.046 36.000 11.05 0.00 0.00 2.69
6116 6686 7.574607 ACTCCTTCCGTTCCTAAATATTTGAT 58.425 34.615 11.05 0.00 0.00 2.57
6117 6687 8.053355 ACTCCTTCCGTTCCTAAATATTTGATT 58.947 33.333 11.05 0.00 0.00 2.57
6119 6689 9.250246 TCCTTCCGTTCCTAAATATTTGATTTT 57.750 29.630 11.05 0.00 0.00 1.82
6120 6690 9.869757 CCTTCCGTTCCTAAATATTTGATTTTT 57.130 29.630 11.05 0.00 0.00 1.94
6149 6719 9.823647 AGATTTCAAATAGACTACCACATACAG 57.176 33.333 0.00 0.00 0.00 2.74
6152 6722 9.599866 TTTCAAATAGACTACCACATACAGATG 57.400 33.333 0.00 0.00 39.16 2.90
6211 6781 6.795098 TTTGCTTCGTATGTAGTCATTTGT 57.205 33.333 0.00 0.00 35.70 2.83
6212 6782 6.795098 TTGCTTCGTATGTAGTCATTTGTT 57.205 33.333 0.00 0.00 35.70 2.83
6214 6784 5.929415 TGCTTCGTATGTAGTCATTTGTTGA 59.071 36.000 0.00 0.00 35.70 3.18
6216 6786 7.041712 TGCTTCGTATGTAGTCATTTGTTGAAA 60.042 33.333 0.00 0.00 35.70 2.69
6218 6788 9.478019 CTTCGTATGTAGTCATTTGTTGAAATC 57.522 33.333 0.00 0.00 35.70 2.17
6219 6789 8.771920 TCGTATGTAGTCATTTGTTGAAATCT 57.228 30.769 0.00 0.00 35.70 2.40
6221 6791 8.443160 CGTATGTAGTCATTTGTTGAAATCTGT 58.557 33.333 0.00 0.00 35.70 3.41
6224 6794 9.725019 ATGTAGTCATTTGTTGAAATCTGTAGA 57.275 29.630 0.00 0.00 35.70 2.59
6225 6795 9.554395 TGTAGTCATTTGTTGAAATCTGTAGAA 57.446 29.630 0.00 0.00 35.70 2.10
6228 6798 9.342308 AGTCATTTGTTGAAATCTGTAGAAAGA 57.658 29.630 0.00 0.00 35.70 2.52
6229 6799 9.387123 GTCATTTGTTGAAATCTGTAGAAAGAC 57.613 33.333 0.00 0.00 35.70 3.01
6231 6801 9.734620 CATTTGTTGAAATCTGTAGAAAGACAA 57.265 29.630 0.00 0.00 28.65 3.18
6249 6819 9.556030 GAAAGACAAATATTTAGAAACGAAGGG 57.444 33.333 0.00 0.00 0.00 3.95
6251 6821 8.494016 AGACAAATATTTAGAAACGAAGGGAG 57.506 34.615 0.00 0.00 0.00 4.30
6252 6822 8.101419 AGACAAATATTTAGAAACGAAGGGAGT 58.899 33.333 0.00 0.00 0.00 3.85
6253 6823 9.374838 GACAAATATTTAGAAACGAAGGGAGTA 57.625 33.333 0.00 0.00 0.00 2.59
6254 6824 9.901172 ACAAATATTTAGAAACGAAGGGAGTAT 57.099 29.630 0.00 0.00 0.00 2.12
6263 6959 2.358267 ACGAAGGGAGTATTAGTCAGCG 59.642 50.000 0.00 0.00 0.00 5.18
6269 6965 3.004524 GGGAGTATTAGTCAGCGGTAGTG 59.995 52.174 1.13 0.00 0.00 2.74
6298 6994 6.404184 CGGATACTCCTATGATCTGCTAAGTG 60.404 46.154 0.00 0.00 33.30 3.16
6299 6995 6.661377 GGATACTCCTATGATCTGCTAAGTGA 59.339 42.308 0.00 0.00 32.53 3.41
6358 7054 7.142680 CGGAATCTAAAGGAGAATCTGTACTC 58.857 42.308 0.00 0.00 36.19 2.59
6360 7056 7.013464 GGAATCTAAAGGAGAATCTGTACTCGA 59.987 40.741 0.00 0.00 37.85 4.04
6373 7072 6.522233 TCTGTACTCGATTGTACTACGATC 57.478 41.667 14.03 6.41 42.22 3.69
6379 7078 6.028368 ACTCGATTGTACTACGATCAAACAG 58.972 40.000 14.42 7.99 38.62 3.16
6400 7099 2.757099 GCCGGAGACCTCCCGTTA 60.757 66.667 5.05 0.00 46.96 3.18
6410 7109 3.390311 AGACCTCCCGTTACTTTCAGTTT 59.610 43.478 0.00 0.00 0.00 2.66
6415 7114 4.628074 TCCCGTTACTTTCAGTTTCAGAG 58.372 43.478 0.00 0.00 0.00 3.35
6417 7116 3.120991 CCGTTACTTTCAGTTTCAGAGCG 60.121 47.826 0.00 0.00 0.00 5.03
6449 7148 0.443869 CGCTGCAAACGCAATAGAGT 59.556 50.000 0.00 0.00 39.39 3.24
6457 7156 5.291858 TGCAAACGCAATAGAGTAATCTCTG 59.708 40.000 0.00 0.00 42.66 3.35
6458 7157 7.613975 TGCAAACGCAATAGAGTAATCTCTGG 61.614 42.308 0.00 0.00 42.66 3.86
6483 7182 4.870305 CTCTGGTCAACGGAGTCG 57.130 61.111 0.00 0.00 45.00 4.18
6495 7194 2.995466 CGGAGTCGTTGTACTTACCA 57.005 50.000 0.00 0.00 0.00 3.25
6553 7252 1.821332 CAAGGCGCCAGAAGGGATC 60.821 63.158 31.54 0.00 40.01 3.36
6556 7255 2.735772 GGCGCCAGAAGGGATCAGA 61.736 63.158 24.80 0.00 40.01 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.327731 AGCAGGCTATAAGGATTAAACTAGTAT 57.672 33.333 0.00 0.00 32.17 2.12
12 13 8.585881 CAGCAGGCTATAAGGATTAAACTAGTA 58.414 37.037 0.00 0.00 32.17 1.82
13 14 7.290248 TCAGCAGGCTATAAGGATTAAACTAGT 59.710 37.037 0.00 0.00 32.17 2.57
14 15 7.600752 GTCAGCAGGCTATAAGGATTAAACTAG 59.399 40.741 0.00 0.00 32.17 2.57
15 16 7.290248 AGTCAGCAGGCTATAAGGATTAAACTA 59.710 37.037 0.00 0.00 32.17 2.24
16 17 6.100424 AGTCAGCAGGCTATAAGGATTAAACT 59.900 38.462 0.00 0.00 32.17 2.66
17 18 6.292150 AGTCAGCAGGCTATAAGGATTAAAC 58.708 40.000 0.00 0.00 32.17 2.01
18 19 6.099701 TGAGTCAGCAGGCTATAAGGATTAAA 59.900 38.462 0.00 0.00 32.17 1.52
19 20 5.602561 TGAGTCAGCAGGCTATAAGGATTAA 59.397 40.000 0.00 0.00 32.17 1.40
20 21 5.147767 TGAGTCAGCAGGCTATAAGGATTA 58.852 41.667 0.00 0.00 33.48 1.75
21 22 3.969976 TGAGTCAGCAGGCTATAAGGATT 59.030 43.478 0.00 0.00 0.00 3.01
22 23 3.577848 CTGAGTCAGCAGGCTATAAGGAT 59.422 47.826 7.33 0.00 32.26 3.24
23 24 2.961741 CTGAGTCAGCAGGCTATAAGGA 59.038 50.000 7.33 0.00 32.26 3.36
24 25 3.383620 CTGAGTCAGCAGGCTATAAGG 57.616 52.381 7.33 0.00 32.26 2.69
53 54 9.941664 GACGTGTAAGAGCAAGTATAATAAGTA 57.058 33.333 0.00 0.00 31.65 2.24
54 55 7.919621 GGACGTGTAAGAGCAAGTATAATAAGT 59.080 37.037 0.00 0.00 31.65 2.24
55 56 8.136165 AGGACGTGTAAGAGCAAGTATAATAAG 58.864 37.037 0.00 0.00 31.65 1.73
56 57 7.919091 CAGGACGTGTAAGAGCAAGTATAATAA 59.081 37.037 0.00 0.00 31.65 1.40
57 58 7.067859 ACAGGACGTGTAAGAGCAAGTATAATA 59.932 37.037 0.00 0.00 37.75 0.98
58 59 6.127423 ACAGGACGTGTAAGAGCAAGTATAAT 60.127 38.462 0.00 0.00 37.75 1.28
59 60 5.184479 ACAGGACGTGTAAGAGCAAGTATAA 59.816 40.000 0.00 0.00 37.75 0.98
60 61 4.703575 ACAGGACGTGTAAGAGCAAGTATA 59.296 41.667 0.00 0.00 37.75 1.47
61 62 3.510360 ACAGGACGTGTAAGAGCAAGTAT 59.490 43.478 0.00 0.00 37.75 2.12
62 63 2.889045 ACAGGACGTGTAAGAGCAAGTA 59.111 45.455 0.00 0.00 37.75 2.24
63 64 1.687123 ACAGGACGTGTAAGAGCAAGT 59.313 47.619 0.00 0.00 37.75 3.16
64 65 2.440539 ACAGGACGTGTAAGAGCAAG 57.559 50.000 0.00 0.00 37.75 4.01
65 66 4.703575 AGTATACAGGACGTGTAAGAGCAA 59.296 41.667 11.72 0.00 45.00 3.91
66 67 4.267536 AGTATACAGGACGTGTAAGAGCA 58.732 43.478 11.72 0.00 45.00 4.26
67 68 4.261114 GGAGTATACAGGACGTGTAAGAGC 60.261 50.000 11.72 3.41 45.00 4.09
68 69 4.880120 TGGAGTATACAGGACGTGTAAGAG 59.120 45.833 11.72 0.00 45.00 2.85
69 70 4.847198 TGGAGTATACAGGACGTGTAAGA 58.153 43.478 11.72 1.37 45.00 2.10
70 71 5.507482 CCATGGAGTATACAGGACGTGTAAG 60.507 48.000 5.56 0.00 45.00 2.34
71 72 4.340097 CCATGGAGTATACAGGACGTGTAA 59.660 45.833 5.56 0.28 45.00 2.41
72 73 3.887110 CCATGGAGTATACAGGACGTGTA 59.113 47.826 5.56 10.23 45.93 2.90
83 84 2.963101 CGAGTGTTCCCCATGGAGTATA 59.037 50.000 15.22 0.00 43.07 1.47
93 94 1.153881 GTAGCGTCGAGTGTTCCCC 60.154 63.158 0.00 0.00 0.00 4.81
139 145 4.163552 GTTCACATCATTACGACGAGTCA 58.836 43.478 0.00 0.00 0.00 3.41
173 179 0.759436 GCTCGATTGGACCTAGGGGA 60.759 60.000 14.81 0.00 36.25 4.81
360 393 6.699575 ATATTTTTGGAGGAGGATTGTTCG 57.300 37.500 0.00 0.00 0.00 3.95
403 437 1.503818 CGGTTCTGGTTCCGTGGTTG 61.504 60.000 0.00 0.00 41.58 3.77
431 465 1.228552 GCTTGCTGTTTCTGGGGGA 60.229 57.895 0.00 0.00 0.00 4.81
438 472 2.574018 GGGTGGGGCTTGCTGTTTC 61.574 63.158 0.00 0.00 0.00 2.78
455 490 2.909965 CGGTGGGTTTGGTGTGGG 60.910 66.667 0.00 0.00 0.00 4.61
477 512 3.053291 GCGGCGTTTGATGGTGGA 61.053 61.111 9.37 0.00 0.00 4.02
478 513 4.114997 GGCGGCGTTTGATGGTGG 62.115 66.667 9.37 0.00 0.00 4.61
480 515 4.652131 TGGGCGGCGTTTGATGGT 62.652 61.111 9.37 0.00 0.00 3.55
484 519 4.572571 AGGTTGGGCGGCGTTTGA 62.573 61.111 9.37 0.00 0.00 2.69
565 616 2.742372 GGATGGCGTGCGAGTTGT 60.742 61.111 0.00 0.00 0.00 3.32
566 617 3.499737 GGGATGGCGTGCGAGTTG 61.500 66.667 0.00 0.00 0.00 3.16
567 618 3.329542 ATGGGATGGCGTGCGAGTT 62.330 57.895 0.00 0.00 0.00 3.01
568 619 3.740128 GATGGGATGGCGTGCGAGT 62.740 63.158 0.00 0.00 0.00 4.18
587 638 2.196776 CCAGGTGGGATGGGATGC 59.803 66.667 0.00 0.00 40.01 3.91
646 710 0.107993 TGGAGATCTCGGCAGCAAAG 60.108 55.000 16.46 0.00 0.00 2.77
647 711 0.543277 ATGGAGATCTCGGCAGCAAA 59.457 50.000 16.46 0.00 0.00 3.68
648 712 0.105593 GATGGAGATCTCGGCAGCAA 59.894 55.000 16.46 0.00 0.00 3.91
649 713 1.744639 GATGGAGATCTCGGCAGCA 59.255 57.895 16.46 8.70 0.00 4.41
650 714 1.005156 GGATGGAGATCTCGGCAGC 60.005 63.158 16.46 11.96 0.00 5.25
699 764 2.029307 GAAATCGGGAGAGGGACGGG 62.029 65.000 0.00 0.00 45.48 5.28
752 817 0.589708 GACCACGGGGAAAAAGAACG 59.410 55.000 12.96 0.00 38.05 3.95
753 818 1.977056 AGACCACGGGGAAAAAGAAC 58.023 50.000 12.96 0.00 38.05 3.01
754 819 2.740506 AAGACCACGGGGAAAAAGAA 57.259 45.000 12.96 0.00 38.05 2.52
755 820 2.092321 TGAAAGACCACGGGGAAAAAGA 60.092 45.455 12.96 0.00 38.05 2.52
756 821 2.303175 TGAAAGACCACGGGGAAAAAG 58.697 47.619 12.96 0.00 38.05 2.27
969 1106 4.507916 CCTCCTCCGCCTCTCCGA 62.508 72.222 0.00 0.00 0.00 4.55
971 1108 2.520741 CTCCTCCTCCGCCTCTCC 60.521 72.222 0.00 0.00 0.00 3.71
972 1109 2.520741 CCTCCTCCTCCGCCTCTC 60.521 72.222 0.00 0.00 0.00 3.20
973 1110 3.024356 TCCTCCTCCTCCGCCTCT 61.024 66.667 0.00 0.00 0.00 3.69
1125 1262 0.186386 GATTCGAGGGAGAGGGAGGA 59.814 60.000 0.00 0.00 0.00 3.71
1203 1371 2.438434 AGATTCGGGCCCGCTTTG 60.438 61.111 39.89 14.03 39.59 2.77
1402 1583 8.809159 TGTGGTGTATGTGACAAAATAAAATG 57.191 30.769 0.00 0.00 40.66 2.32
1421 1603 6.273825 CCTACTAGTACAAGCTAATGTGGTG 58.726 44.000 0.00 0.00 34.75 4.17
1424 1607 5.163447 TGCCCTACTAGTACAAGCTAATGTG 60.163 44.000 0.00 0.00 34.75 3.21
1436 1619 6.760440 ATGAGTACTACTGCCCTACTAGTA 57.240 41.667 1.89 1.89 0.00 1.82
1437 1620 5.649970 ATGAGTACTACTGCCCTACTAGT 57.350 43.478 0.00 0.00 0.00 2.57
1475 1658 8.776119 AGCTTATCTACAATATCCATATGGCTT 58.224 33.333 17.58 9.38 34.44 4.35
1476 1659 8.329346 AGCTTATCTACAATATCCATATGGCT 57.671 34.615 17.58 10.33 34.44 4.75
1477 1660 8.206867 TGAGCTTATCTACAATATCCATATGGC 58.793 37.037 17.58 0.00 34.44 4.40
1483 1666 6.881065 GCCATTGAGCTTATCTACAATATCCA 59.119 38.462 0.00 0.00 32.75 3.41
1484 1667 6.881065 TGCCATTGAGCTTATCTACAATATCC 59.119 38.462 0.00 0.00 32.75 2.59
1485 1668 7.912056 TGCCATTGAGCTTATCTACAATATC 57.088 36.000 0.00 0.00 32.75 1.63
1486 1669 7.941238 ACTTGCCATTGAGCTTATCTACAATAT 59.059 33.333 0.00 0.00 32.75 1.28
1487 1670 7.227314 CACTTGCCATTGAGCTTATCTACAATA 59.773 37.037 0.00 0.00 32.75 1.90
1488 1671 6.039047 CACTTGCCATTGAGCTTATCTACAAT 59.961 38.462 0.00 0.00 34.01 2.71
1489 1672 5.355071 CACTTGCCATTGAGCTTATCTACAA 59.645 40.000 0.00 0.00 0.00 2.41
1490 1673 4.877823 CACTTGCCATTGAGCTTATCTACA 59.122 41.667 0.00 0.00 0.00 2.74
1491 1674 4.260948 GCACTTGCCATTGAGCTTATCTAC 60.261 45.833 0.00 0.00 34.31 2.59
1492 1675 3.879295 GCACTTGCCATTGAGCTTATCTA 59.121 43.478 0.00 0.00 34.31 1.98
1518 1701 2.288729 CACGAACCATATGGCATGACTG 59.711 50.000 22.18 7.33 39.32 3.51
1588 1774 2.623416 GGACTAATACAATTGGCCTGCC 59.377 50.000 10.83 0.00 0.00 4.85
1595 1781 5.299279 GTGACCCCATGGACTAATACAATTG 59.701 44.000 15.22 3.24 34.81 2.32
1598 1784 4.108570 AGTGACCCCATGGACTAATACAA 58.891 43.478 15.22 0.00 34.81 2.41
1599 1785 3.731431 AGTGACCCCATGGACTAATACA 58.269 45.455 15.22 0.58 34.81 2.29
1602 1788 3.464828 AGAAGTGACCCCATGGACTAAT 58.535 45.455 15.22 0.00 34.81 1.73
1636 1822 7.194607 TGCAATTTCTTCAACAACAACAAAA 57.805 28.000 0.00 0.00 0.00 2.44
1699 1886 1.339151 CCTGGGTTCAAGTACTCTGCC 60.339 57.143 0.00 0.00 0.00 4.85
1775 1968 3.136992 AGAACGAAGGGGTCCAAGTTTAA 59.863 43.478 0.00 0.00 0.00 1.52
1786 1979 0.679505 TCAGTCACAGAACGAAGGGG 59.320 55.000 0.00 0.00 0.00 4.79
1794 1987 0.613260 CCGGGGATTCAGTCACAGAA 59.387 55.000 0.00 0.00 29.12 3.02
1878 2071 8.145767 TCTTCAACCGTCATTTTAGAGAAAGTA 58.854 33.333 0.00 0.00 0.00 2.24
1899 2092 4.451096 GGAAGTAACTTGCGTGAATCTTCA 59.549 41.667 0.00 0.00 33.91 3.02
1984 2177 3.540314 AGAGCTAACCAGAGATTGCTG 57.460 47.619 0.00 0.00 35.66 4.41
2005 2198 7.940688 ACATGATCATTCACCTATCATTGCTAA 59.059 33.333 5.16 0.00 38.08 3.09
2006 2199 7.455891 ACATGATCATTCACCTATCATTGCTA 58.544 34.615 5.16 0.00 38.08 3.49
2007 2200 6.304624 ACATGATCATTCACCTATCATTGCT 58.695 36.000 5.16 0.00 38.08 3.91
2008 2201 6.570672 ACATGATCATTCACCTATCATTGC 57.429 37.500 5.16 0.00 38.08 3.56
2054 2248 5.824624 TGAGCTCCTCATTAAGCCATTTTAG 59.175 40.000 12.15 0.00 39.39 1.85
2484 2678 5.515797 TGCTGGTGTCATACTCATACTAC 57.484 43.478 0.00 0.00 0.00 2.73
2704 2913 5.861787 GTGGTGCACCTTAAATGAACATTAC 59.138 40.000 34.75 16.40 36.82 1.89
2707 2916 4.151883 AGTGGTGCACCTTAAATGAACAT 58.848 39.130 34.75 10.34 34.49 2.71
2850 3075 2.540383 ACCTGCACCAAGATGAGTAGA 58.460 47.619 0.00 0.00 0.00 2.59
3030 3255 7.596248 GCGCATATTCCATCAATTCATAGTTTT 59.404 33.333 0.30 0.00 0.00 2.43
3087 3312 4.737855 TCAACCGGTCCAAAAATGAAAA 57.262 36.364 8.04 0.00 0.00 2.29
3091 3316 6.393990 TCATAATTCAACCGGTCCAAAAATG 58.606 36.000 8.04 8.98 0.00 2.32
3130 3355 9.745880 CTTGACTACTTCTTACTTGTTAGACAA 57.254 33.333 0.00 0.00 36.54 3.18
3165 3392 6.611613 AGAGTAGAATCTGATCAACAACCA 57.388 37.500 0.00 0.00 0.00 3.67
3203 3430 0.258484 CACCATATGCCCCTTGGTCA 59.742 55.000 0.00 0.00 41.77 4.02
3316 3577 7.778083 ACGATTAACACTATCACTATCCAACA 58.222 34.615 0.00 0.00 0.00 3.33
3351 3612 9.959721 ACATGATACAGTAATTAGTTGAGGTTT 57.040 29.630 0.00 0.00 0.00 3.27
3424 3685 4.897509 TCACCTATATGGCAGGAGAATG 57.102 45.455 0.00 0.00 40.22 2.67
3654 3917 0.109532 TCGCCACCAATGACCTTCAA 59.890 50.000 0.00 0.00 0.00 2.69
3740 4003 5.143376 AGGATTTGCAAATTCCAACTCTG 57.857 39.130 27.65 0.00 46.22 3.35
3913 4176 7.203910 CACTGTGAGTTAGGGACACTATTATC 58.796 42.308 0.32 0.00 35.83 1.75
3925 4207 4.543590 AGTCATTCCACTGTGAGTTAGG 57.456 45.455 9.86 0.00 0.00 2.69
3930 4212 8.771766 CAATCATTATAGTCATTCCACTGTGAG 58.228 37.037 9.86 0.00 0.00 3.51
4285 4567 3.983988 CAGATTCCTGAATACCGTCATCG 59.016 47.826 0.00 0.00 43.02 3.84
4761 5049 0.831307 AGAACCCCTCGCAGGATAAC 59.169 55.000 4.00 0.00 37.67 1.89
4877 5165 5.598417 AGAAATTACCCTTGTCTTGTGCTTT 59.402 36.000 0.00 0.00 0.00 3.51
4929 5219 1.489649 TCCGGACAGAGGGAGTACTAG 59.510 57.143 0.00 0.00 0.00 2.57
4935 5225 2.389715 AGTATTTCCGGACAGAGGGAG 58.610 52.381 1.83 0.00 33.01 4.30
4936 5226 2.500098 CAAGTATTTCCGGACAGAGGGA 59.500 50.000 1.83 0.00 0.00 4.20
4937 5227 2.236395 ACAAGTATTTCCGGACAGAGGG 59.764 50.000 1.83 0.00 0.00 4.30
4938 5228 3.056107 TGACAAGTATTTCCGGACAGAGG 60.056 47.826 1.83 0.00 0.00 3.69
4939 5229 3.927142 GTGACAAGTATTTCCGGACAGAG 59.073 47.826 1.83 0.00 0.00 3.35
4940 5230 3.306502 GGTGACAAGTATTTCCGGACAGA 60.307 47.826 1.83 0.00 0.00 3.41
4941 5231 3.000727 GGTGACAAGTATTTCCGGACAG 58.999 50.000 1.83 0.00 0.00 3.51
4942 5232 2.369203 TGGTGACAAGTATTTCCGGACA 59.631 45.455 1.83 0.00 37.44 4.02
4943 5233 3.048337 TGGTGACAAGTATTTCCGGAC 57.952 47.619 1.83 0.00 37.44 4.79
4956 5246 6.310941 TCTCCTTTTATCCATTTTGGTGACA 58.689 36.000 0.00 0.00 39.03 3.58
4957 5247 6.834168 TCTCCTTTTATCCATTTTGGTGAC 57.166 37.500 0.00 0.00 39.03 3.67
4958 5248 6.953520 ACATCTCCTTTTATCCATTTTGGTGA 59.046 34.615 0.00 0.00 39.03 4.02
4959 5249 7.174107 ACATCTCCTTTTATCCATTTTGGTG 57.826 36.000 0.00 0.00 39.03 4.17
4960 5250 9.136323 GATACATCTCCTTTTATCCATTTTGGT 57.864 33.333 0.00 0.00 39.03 3.67
4961 5251 9.359653 AGATACATCTCCTTTTATCCATTTTGG 57.640 33.333 0.00 0.00 32.96 3.28
4967 5257 9.607333 ACATCTAGATACATCTCCTTTTATCCA 57.393 33.333 4.54 0.00 38.32 3.41
5023 5313 9.443323 TCCGAAAATACTTGTCATCAAAATAGA 57.557 29.630 0.00 0.00 32.87 1.98
5024 5314 9.490663 GTCCGAAAATACTTGTCATCAAAATAG 57.509 33.333 0.00 0.00 32.87 1.73
5025 5315 8.172484 CGTCCGAAAATACTTGTCATCAAAATA 58.828 33.333 0.00 0.00 32.87 1.40
5026 5316 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
5027 5317 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
5028 5318 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
5029 5319 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
5030 5320 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
5031 5321 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
5032 5322 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
5033 5323 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
5034 5324 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
5035 5325 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
5036 5326 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
5037 5327 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
5038 5328 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
5039 5329 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
5040 5330 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
5041 5331 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
5042 5332 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
5043 5333 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
5044 5334 2.734755 TTATACTCCCTCCGTCCGAA 57.265 50.000 0.00 0.00 0.00 4.30
5045 5335 2.965671 ATTATACTCCCTCCGTCCGA 57.034 50.000 0.00 0.00 0.00 4.55
5046 5336 4.267536 TGATATTATACTCCCTCCGTCCG 58.732 47.826 0.00 0.00 0.00 4.79
5047 5337 7.013464 CACTATGATATTATACTCCCTCCGTCC 59.987 44.444 0.00 0.00 0.00 4.79
5048 5338 7.556996 ACACTATGATATTATACTCCCTCCGTC 59.443 40.741 0.00 0.00 0.00 4.79
5049 5339 7.411808 ACACTATGATATTATACTCCCTCCGT 58.588 38.462 0.00 0.00 0.00 4.69
5050 5340 7.883391 ACACTATGATATTATACTCCCTCCG 57.117 40.000 0.00 0.00 0.00 4.63
5079 5370 5.507650 GCCAACATTGCAAAACCATTGAAAT 60.508 36.000 1.71 0.00 0.00 2.17
5088 5379 2.137523 CAGAGGCCAACATTGCAAAAC 58.862 47.619 5.01 0.00 0.00 2.43
5158 5711 3.732212 CACATGACAGGAACAGTGAAGA 58.268 45.455 0.00 0.00 0.00 2.87
5181 5739 0.948623 TCATTCACAACCTGCCGTCG 60.949 55.000 0.00 0.00 0.00 5.12
5185 5743 1.615392 AGCTTTCATTCACAACCTGCC 59.385 47.619 0.00 0.00 0.00 4.85
5267 5825 5.753438 GTCGTGATCATAAACTTCCAGCATA 59.247 40.000 0.00 0.00 0.00 3.14
5324 5882 4.402474 CCCGGACAGCACTATGATATGATA 59.598 45.833 0.73 0.00 0.00 2.15
5328 5886 2.609747 ACCCGGACAGCACTATGATAT 58.390 47.619 0.73 0.00 0.00 1.63
5380 5939 7.264221 ACAGAAAACATAGTTTTGACATGCAA 58.736 30.769 12.08 0.00 33.88 4.08
5381 5940 6.804677 ACAGAAAACATAGTTTTGACATGCA 58.195 32.000 12.08 0.00 0.00 3.96
5382 5941 7.538678 CCTACAGAAAACATAGTTTTGACATGC 59.461 37.037 12.08 0.00 0.00 4.06
5383 5942 8.783093 TCCTACAGAAAACATAGTTTTGACATG 58.217 33.333 12.08 8.17 0.00 3.21
5395 5957 6.828785 GTCCCATGTAATCCTACAGAAAACAT 59.171 38.462 0.00 0.00 41.33 2.71
5437 5999 4.755123 TCCTCTTCGATCAAAACCTTTGTC 59.245 41.667 0.00 0.00 0.00 3.18
5440 6002 6.940298 TGTATTCCTCTTCGATCAAAACCTTT 59.060 34.615 0.00 0.00 0.00 3.11
5461 6023 3.807209 GCAATGGGAAGCTATCGGTGTAT 60.807 47.826 0.00 0.00 0.00 2.29
5536 6098 1.143305 CTCCCGAATCACGCATGATC 58.857 55.000 0.00 0.00 45.26 2.92
5645 6209 4.390297 TGTTTTCAAAAAGAAAGCCAACCG 59.610 37.500 0.00 0.00 46.24 4.44
5680 6246 8.090214 CCATTTACACCTGAAAAATGATTGACT 58.910 33.333 14.24 0.00 41.14 3.41
5685 6255 7.877612 GGAAACCATTTACACCTGAAAAATGAT 59.122 33.333 14.24 1.52 41.14 2.45
5708 6278 1.519751 CCGCAACGAAACCATGGGAA 61.520 55.000 18.09 0.00 0.00 3.97
5723 6293 3.204119 CCATGAATCTGCGCCGCA 61.204 61.111 12.83 12.83 36.92 5.69
5729 6299 1.723542 CTATCGACGCCATGAATCTGC 59.276 52.381 0.00 0.00 0.00 4.26
5730 6300 3.288809 TCTATCGACGCCATGAATCTG 57.711 47.619 0.00 0.00 0.00 2.90
5733 6303 4.257267 TCAATCTATCGACGCCATGAAT 57.743 40.909 0.00 0.00 0.00 2.57
5734 6304 3.726291 TCAATCTATCGACGCCATGAA 57.274 42.857 0.00 0.00 0.00 2.57
5741 6311 5.641777 TTGCAGAATTCAATCTATCGACG 57.358 39.130 8.44 0.00 0.00 5.12
5785 6355 8.024865 GGCGTTACAATAAGGAAATTAAACACT 58.975 33.333 0.00 0.00 0.00 3.55
5799 6369 5.048364 ACTTTGAAGCATGGCGTTACAATAA 60.048 36.000 0.00 0.00 0.00 1.40
5800 6370 4.457603 ACTTTGAAGCATGGCGTTACAATA 59.542 37.500 0.00 0.00 0.00 1.90
5801 6371 3.255642 ACTTTGAAGCATGGCGTTACAAT 59.744 39.130 0.00 0.00 0.00 2.71
5823 6393 3.586100 TCTACTGCATTTACAGACGCA 57.414 42.857 0.00 0.00 40.25 5.24
5861 6431 1.322538 AAAGCATCCACGATTGCCCC 61.323 55.000 0.00 0.00 0.00 5.80
5931 6501 0.525761 CGATCCGGCACCAAAAACAT 59.474 50.000 0.00 0.00 0.00 2.71
5950 6520 1.329599 CACGGCCTTTCTATAAACCGC 59.670 52.381 0.00 0.00 37.61 5.68
5968 6538 1.670811 CAACTATGACCCAATCGGCAC 59.329 52.381 0.00 0.00 33.26 5.01
5971 6541 2.158900 AGAGCAACTATGACCCAATCGG 60.159 50.000 0.00 0.00 37.81 4.18
5972 6542 3.126831 GAGAGCAACTATGACCCAATCG 58.873 50.000 0.00 0.00 0.00 3.34
5979 6549 2.096174 AGACGACGAGAGCAACTATGAC 59.904 50.000 0.00 0.00 0.00 3.06
5986 6556 0.952280 ACTTCAGACGACGAGAGCAA 59.048 50.000 0.00 0.00 0.00 3.91
5991 6561 2.727777 TGTCAAACTTCAGACGACGAG 58.272 47.619 0.00 0.00 37.58 4.18
5996 6566 3.242706 TGTTGCATGTCAAACTTCAGACG 60.243 43.478 4.47 0.00 37.58 4.18
6007 6577 1.675483 GACCACAGTTGTTGCATGTCA 59.325 47.619 0.00 0.00 0.00 3.58
6008 6578 1.001378 GGACCACAGTTGTTGCATGTC 60.001 52.381 0.00 0.00 0.00 3.06
6009 6579 1.032014 GGACCACAGTTGTTGCATGT 58.968 50.000 0.00 0.00 0.00 3.21
6010 6580 0.040157 CGGACCACAGTTGTTGCATG 60.040 55.000 0.00 0.00 0.00 4.06
6011 6581 0.465460 ACGGACCACAGTTGTTGCAT 60.465 50.000 0.00 0.00 0.00 3.96
6012 6582 0.178301 TACGGACCACAGTTGTTGCA 59.822 50.000 0.00 0.00 0.00 4.08
6013 6583 1.519408 ATACGGACCACAGTTGTTGC 58.481 50.000 0.00 0.00 0.00 4.17
6014 6584 3.655486 TGTATACGGACCACAGTTGTTG 58.345 45.455 0.00 0.00 0.00 3.33
6015 6585 3.863400 GCTGTATACGGACCACAGTTGTT 60.863 47.826 16.15 0.00 41.39 2.83
6016 6586 2.353406 GCTGTATACGGACCACAGTTGT 60.353 50.000 16.15 0.00 41.39 3.32
6017 6587 2.268298 GCTGTATACGGACCACAGTTG 58.732 52.381 16.15 0.00 41.39 3.16
6018 6588 1.897133 TGCTGTATACGGACCACAGTT 59.103 47.619 16.15 0.00 41.39 3.16
6019 6589 1.552578 TGCTGTATACGGACCACAGT 58.447 50.000 16.15 0.00 41.39 3.55
6020 6590 2.473816 CATGCTGTATACGGACCACAG 58.526 52.381 16.15 6.82 42.08 3.66
6021 6591 1.472552 GCATGCTGTATACGGACCACA 60.473 52.381 16.15 4.15 0.00 4.17
6022 6592 1.202533 AGCATGCTGTATACGGACCAC 60.203 52.381 21.98 1.90 0.00 4.16
6023 6593 1.119684 AGCATGCTGTATACGGACCA 58.880 50.000 21.98 5.23 0.00 4.02
6024 6594 1.068588 TCAGCATGCTGTATACGGACC 59.931 52.381 39.08 0.00 43.96 4.46
6025 6595 2.509052 TCAGCATGCTGTATACGGAC 57.491 50.000 39.08 7.44 43.96 4.79
6026 6596 3.457234 CTTTCAGCATGCTGTATACGGA 58.543 45.455 39.08 21.01 43.96 4.69
6027 6597 2.545526 CCTTTCAGCATGCTGTATACGG 59.454 50.000 39.08 28.63 43.96 4.02
6028 6598 3.457234 TCCTTTCAGCATGCTGTATACG 58.543 45.455 39.08 25.50 43.96 3.06
6029 6599 5.991606 TGTATCCTTTCAGCATGCTGTATAC 59.008 40.000 39.08 32.38 43.96 1.47
6030 6600 6.173427 TGTATCCTTTCAGCATGCTGTATA 57.827 37.500 39.08 26.40 43.96 1.47
6031 6601 5.039920 TGTATCCTTTCAGCATGCTGTAT 57.960 39.130 39.08 27.22 43.96 2.29
6032 6602 4.080919 ACTGTATCCTTTCAGCATGCTGTA 60.081 41.667 39.08 30.97 43.96 2.74
6033 6603 3.276857 CTGTATCCTTTCAGCATGCTGT 58.723 45.455 39.08 25.14 43.96 4.40
6034 6604 3.276857 ACTGTATCCTTTCAGCATGCTG 58.723 45.455 36.80 36.80 44.86 4.41
6035 6605 3.641434 ACTGTATCCTTTCAGCATGCT 57.359 42.857 16.30 16.30 35.37 3.79
6036 6606 5.220931 CCTTAACTGTATCCTTTCAGCATGC 60.221 44.000 10.51 10.51 35.37 4.06
6079 6649 4.756502 ACGGAAGGAGTACTATTTCTTGC 58.243 43.478 14.88 11.49 0.00 4.01
6080 6650 5.811100 GGAACGGAAGGAGTACTATTTCTTG 59.189 44.000 14.88 11.49 0.00 3.02
6081 6651 5.720520 AGGAACGGAAGGAGTACTATTTCTT 59.279 40.000 14.88 8.61 0.00 2.52
6082 6652 5.270794 AGGAACGGAAGGAGTACTATTTCT 58.729 41.667 14.88 1.64 0.00 2.52
6083 6653 5.595257 AGGAACGGAAGGAGTACTATTTC 57.405 43.478 0.00 2.79 0.00 2.17
6084 6654 7.486407 TTTAGGAACGGAAGGAGTACTATTT 57.514 36.000 0.00 0.00 0.00 1.40
6085 6655 7.672122 ATTTAGGAACGGAAGGAGTACTATT 57.328 36.000 0.00 0.00 0.00 1.73
6086 6656 8.953223 ATATTTAGGAACGGAAGGAGTACTAT 57.047 34.615 0.00 0.00 0.00 2.12
6087 6657 8.773033 AATATTTAGGAACGGAAGGAGTACTA 57.227 34.615 0.00 0.00 0.00 1.82
6088 6658 7.672122 AATATTTAGGAACGGAAGGAGTACT 57.328 36.000 0.00 0.00 0.00 2.73
6122 6692 9.817809 TGTATGTGGTAGTCTATTTGAAATCTC 57.182 33.333 0.00 0.00 0.00 2.75
6124 6694 9.817809 TCTGTATGTGGTAGTCTATTTGAAATC 57.182 33.333 0.00 0.00 0.00 2.17
6126 6696 9.599866 CATCTGTATGTGGTAGTCTATTTGAAA 57.400 33.333 0.00 0.00 0.00 2.69
6127 6697 8.758829 ACATCTGTATGTGGTAGTCTATTTGAA 58.241 33.333 0.00 0.00 44.79 2.69
6186 6756 7.644490 ACAAATGACTACATACGAAGCAAAAA 58.356 30.769 0.00 0.00 35.50 1.94
6187 6757 7.197071 ACAAATGACTACATACGAAGCAAAA 57.803 32.000 0.00 0.00 35.50 2.44
6189 6759 6.425417 TCAACAAATGACTACATACGAAGCAA 59.575 34.615 0.00 0.00 35.50 3.91
6190 6760 5.929415 TCAACAAATGACTACATACGAAGCA 59.071 36.000 0.00 0.00 35.50 3.91
6191 6761 6.403333 TCAACAAATGACTACATACGAAGC 57.597 37.500 0.00 0.00 35.50 3.86
6192 6762 9.478019 GATTTCAACAAATGACTACATACGAAG 57.522 33.333 0.00 0.00 37.92 3.79
6193 6763 9.214957 AGATTTCAACAAATGACTACATACGAA 57.785 29.630 0.00 0.00 37.92 3.85
6194 6764 8.655970 CAGATTTCAACAAATGACTACATACGA 58.344 33.333 0.00 0.00 37.92 3.43
6195 6765 8.443160 ACAGATTTCAACAAATGACTACATACG 58.557 33.333 0.00 0.00 37.92 3.06
6199 6769 9.554395 TTCTACAGATTTCAACAAATGACTACA 57.446 29.630 0.00 0.00 37.92 2.74
6203 6773 9.387123 GTCTTTCTACAGATTTCAACAAATGAC 57.613 33.333 0.00 0.00 37.92 3.06
6205 6775 9.734620 TTGTCTTTCTACAGATTTCAACAAATG 57.265 29.630 0.00 0.00 31.94 2.32
6223 6793 9.556030 CCCTTCGTTTCTAAATATTTGTCTTTC 57.444 33.333 11.05 0.00 0.00 2.62
6224 6794 9.292195 TCCCTTCGTTTCTAAATATTTGTCTTT 57.708 29.630 11.05 0.00 0.00 2.52
6225 6795 8.857694 TCCCTTCGTTTCTAAATATTTGTCTT 57.142 30.769 11.05 0.00 0.00 3.01
6226 6796 8.101419 ACTCCCTTCGTTTCTAAATATTTGTCT 58.899 33.333 11.05 0.00 0.00 3.41
6228 6798 9.901172 ATACTCCCTTCGTTTCTAAATATTTGT 57.099 29.630 11.05 0.00 0.00 2.83
6234 6804 8.755977 TGACTAATACTCCCTTCGTTTCTAAAT 58.244 33.333 0.00 0.00 0.00 1.40
6236 6806 7.630082 GCTGACTAATACTCCCTTCGTTTCTAA 60.630 40.741 0.00 0.00 0.00 2.10
6238 6808 5.394333 GCTGACTAATACTCCCTTCGTTTCT 60.394 44.000 0.00 0.00 0.00 2.52
6239 6809 4.804665 GCTGACTAATACTCCCTTCGTTTC 59.195 45.833 0.00 0.00 0.00 2.78
6240 6810 4.677250 CGCTGACTAATACTCCCTTCGTTT 60.677 45.833 0.00 0.00 0.00 3.60
6241 6811 3.181489 CGCTGACTAATACTCCCTTCGTT 60.181 47.826 0.00 0.00 0.00 3.85
6242 6812 2.358267 CGCTGACTAATACTCCCTTCGT 59.642 50.000 0.00 0.00 0.00 3.85
6243 6813 2.287668 CCGCTGACTAATACTCCCTTCG 60.288 54.545 0.00 0.00 0.00 3.79
6245 6815 2.748388 ACCGCTGACTAATACTCCCTT 58.252 47.619 0.00 0.00 0.00 3.95
6246 6816 2.456073 ACCGCTGACTAATACTCCCT 57.544 50.000 0.00 0.00 0.00 4.20
6247 6817 3.004524 CACTACCGCTGACTAATACTCCC 59.995 52.174 0.00 0.00 0.00 4.30
6248 6818 3.550436 GCACTACCGCTGACTAATACTCC 60.550 52.174 0.00 0.00 0.00 3.85
6249 6819 3.066342 TGCACTACCGCTGACTAATACTC 59.934 47.826 0.00 0.00 0.00 2.59
6251 6821 3.372954 CTGCACTACCGCTGACTAATAC 58.627 50.000 0.00 0.00 33.02 1.89
6252 6822 2.223735 GCTGCACTACCGCTGACTAATA 60.224 50.000 0.00 0.00 33.02 0.98
6253 6823 1.471676 GCTGCACTACCGCTGACTAAT 60.472 52.381 0.00 0.00 33.02 1.73
6254 6824 0.108804 GCTGCACTACCGCTGACTAA 60.109 55.000 0.00 0.00 33.02 2.24
6255 6825 1.511305 GCTGCACTACCGCTGACTA 59.489 57.895 0.00 0.00 33.02 2.59
6257 6827 3.181967 CGCTGCACTACCGCTGAC 61.182 66.667 0.00 0.00 33.02 3.51
6258 6828 4.435436 CCGCTGCACTACCGCTGA 62.435 66.667 0.00 0.00 33.02 4.26
6263 6959 3.571741 GAGTATCCGCTGCACTACC 57.428 57.895 0.00 0.00 0.00 3.18
6325 7021 9.163899 GATTCTCCTTTAGATTCCGTTAGTTTT 57.836 33.333 0.00 0.00 33.05 2.43
6330 7026 7.419711 ACAGATTCTCCTTTAGATTCCGTTA 57.580 36.000 0.00 0.00 35.90 3.18
6358 7054 6.021390 CACTCTGTTTGATCGTAGTACAATCG 60.021 42.308 0.38 0.00 0.00 3.34
6360 7056 5.577164 GCACTCTGTTTGATCGTAGTACAAT 59.423 40.000 0.38 0.00 0.00 2.71
6373 7072 0.951040 GGTCTCCGGCACTCTGTTTG 60.951 60.000 0.00 0.00 0.00 2.93
6410 7109 2.733218 CGTTCGTTGGCGCTCTGA 60.733 61.111 7.64 0.00 38.14 3.27
6449 7148 1.215673 AGAGCTCCGTCCCAGAGATTA 59.784 52.381 10.93 0.00 32.86 1.75
6457 7156 2.283529 TTGACCAGAGCTCCGTCCC 61.284 63.158 22.39 6.47 0.00 4.46
6458 7157 1.079750 GTTGACCAGAGCTCCGTCC 60.080 63.158 22.39 9.48 0.00 4.79
6480 7179 3.870419 TGGTGTTTGGTAAGTACAACGAC 59.130 43.478 0.00 0.00 32.21 4.34
6483 7182 7.546316 ACATTTTTGGTGTTTGGTAAGTACAAC 59.454 33.333 0.00 0.00 0.00 3.32
6495 7194 9.833182 GATTACAAACAAACATTTTTGGTGTTT 57.167 25.926 16.35 4.76 42.09 2.83
6520 7219 0.182537 CCTTGGCCGTAATGGGATGA 59.817 55.000 0.00 0.00 38.63 2.92
6542 7241 0.179089 CGTGCTCTGATCCCTTCTGG 60.179 60.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.