Multiple sequence alignment - TraesCS2B01G545400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G545400 chr2B 100.000 3328 0 0 1 3328 742420890 742417563 0.000000e+00 6146.0
1 TraesCS2B01G545400 chr2B 80.913 482 68 11 1183 1658 103412619 103412156 3.160000e-95 359.0
2 TraesCS2B01G545400 chr2B 90.000 50 5 0 3277 3326 364788045 364787996 7.710000e-07 65.8
3 TraesCS2B01G545400 chr2D 91.581 1841 87 34 164 1976 608724846 608723046 0.000000e+00 2479.0
4 TraesCS2B01G545400 chr2D 91.721 616 37 7 1963 2565 608722387 608721773 0.000000e+00 843.0
5 TraesCS2B01G545400 chr2D 90.104 384 33 4 2948 3328 608721471 608721090 8.290000e-136 494.0
6 TraesCS2B01G545400 chr2D 91.139 158 13 1 1 158 460730608 460730452 2.600000e-51 213.0
7 TraesCS2B01G545400 chr2D 93.750 48 3 0 3277 3324 2611807 2611854 4.610000e-09 73.1
8 TraesCS2B01G545400 chr2A 90.692 1719 91 27 892 2562 740258510 740256813 0.000000e+00 2224.0
9 TraesCS2B01G545400 chr2A 93.074 693 44 4 164 854 740259198 740258508 0.000000e+00 1011.0
10 TraesCS2B01G545400 chr2A 90.649 385 30 4 2946 3328 740256519 740256139 1.070000e-139 507.0
11 TraesCS2B01G545400 chr2A 91.720 157 13 0 1 157 538434542 538434386 5.590000e-53 219.0
12 TraesCS2B01G545400 chr2A 90.566 159 5 1 2789 2947 740256701 740256553 5.630000e-48 202.0
13 TraesCS2B01G545400 chr5A 95.402 174 4 4 2619 2791 40374000 40374170 1.180000e-69 274.0
14 TraesCS2B01G545400 chr5A 92.000 50 4 0 3277 3326 33936913 33936962 1.660000e-08 71.3
15 TraesCS2B01G545400 chr6D 94.706 170 9 0 2619 2788 76060360 76060529 7.080000e-67 265.0
16 TraesCS2B01G545400 chr6D 94.220 173 7 3 2618 2788 23349934 23350105 9.160000e-66 261.0
17 TraesCS2B01G545400 chr7B 95.238 168 3 2 2621 2788 357927597 357927759 9.160000e-66 261.0
18 TraesCS2B01G545400 chr7B 93.220 177 5 3 2621 2797 14703437 14703268 1.530000e-63 254.0
19 TraesCS2B01G545400 chr7B 90.062 161 16 0 1 161 718846718 718846878 3.360000e-50 209.0
20 TraesCS2B01G545400 chr4A 95.238 168 3 2 2621 2788 690243022 690243184 9.160000e-66 261.0
21 TraesCS2B01G545400 chr7A 94.152 171 8 2 2620 2789 18896504 18896335 3.290000e-65 259.0
22 TraesCS2B01G545400 chr5D 94.186 172 4 2 2619 2789 545719189 545719023 1.180000e-64 257.0
23 TraesCS2B01G545400 chr4B 94.152 171 6 1 2618 2788 63586195 63586029 1.180000e-64 257.0
24 TraesCS2B01G545400 chr4B 90.000 50 5 0 3277 3326 546638976 546639025 7.710000e-07 65.8
25 TraesCS2B01G545400 chr5B 91.139 158 13 1 1 158 53734557 53734713 2.600000e-51 213.0
26 TraesCS2B01G545400 chr5B 89.881 168 13 4 1 164 702738039 702738206 2.600000e-51 213.0
27 TraesCS2B01G545400 chr5B 91.083 157 12 2 2 158 590558451 590558297 9.350000e-51 211.0
28 TraesCS2B01G545400 chr5B 90.000 50 5 0 3277 3326 570515410 570515361 7.710000e-07 65.8
29 TraesCS2B01G545400 chr7D 89.820 167 14 2 1 164 633166337 633166171 9.350000e-51 211.0
30 TraesCS2B01G545400 chr3D 88.953 172 18 1 1 172 537658731 537658901 9.350000e-51 211.0
31 TraesCS2B01G545400 chr1D 90.625 160 14 1 1 160 228065728 228065886 9.350000e-51 211.0
32 TraesCS2B01G545400 chr4D 92.000 50 4 0 3277 3326 53465084 53465035 1.660000e-08 71.3
33 TraesCS2B01G545400 chr3B 91.667 48 4 0 3277 3324 242647116 242647069 2.140000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G545400 chr2B 742417563 742420890 3327 True 6146 6146 100.000000 1 3328 1 chr2B.!!$R3 3327
1 TraesCS2B01G545400 chr2D 608721090 608724846 3756 True 1272 2479 91.135333 164 3328 3 chr2D.!!$R2 3164
2 TraesCS2B01G545400 chr2A 740256139 740259198 3059 True 986 2224 91.245250 164 3328 4 chr2A.!!$R2 3164

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 145 0.028642 AGGCCAGGGGTAATCATCCT 60.029 55.0 5.01 0.0 0.00 3.24 F
886 893 0.108329 CTTGCTTCGGGTCGTACCAT 60.108 55.0 6.41 0.0 41.02 3.55 F
887 894 0.108520 TTGCTTCGGGTCGTACCATC 60.109 55.0 6.41 0.0 41.02 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1415 1434 0.309612 AACGTTGAAATGTCCGGTGC 59.690 50.0 0.00 0.0 0.00 5.01 R
2145 2887 0.037232 GGCGAACTGCTCTTGGTAGT 60.037 55.0 0.00 0.0 45.43 2.73 R
2670 3425 1.009829 CCACGAGGCTCAAGCAATAC 58.990 55.0 15.95 0.0 44.36 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.669536 GCATCAAGGGGATAGAAGTAGC 58.330 50.000 0.00 0.00 33.95 3.58
22 23 3.862642 GCATCAAGGGGATAGAAGTAGCG 60.863 52.174 0.00 0.00 33.95 4.26
23 24 3.308035 TCAAGGGGATAGAAGTAGCGA 57.692 47.619 0.00 0.00 0.00 4.93
24 25 2.957006 TCAAGGGGATAGAAGTAGCGAC 59.043 50.000 0.00 0.00 0.00 5.19
25 26 2.693591 CAAGGGGATAGAAGTAGCGACA 59.306 50.000 0.00 0.00 0.00 4.35
26 27 3.246416 AGGGGATAGAAGTAGCGACAT 57.754 47.619 0.00 0.00 0.00 3.06
27 28 2.894126 AGGGGATAGAAGTAGCGACATG 59.106 50.000 0.00 0.00 0.00 3.21
28 29 2.628657 GGGGATAGAAGTAGCGACATGT 59.371 50.000 0.00 0.00 0.00 3.21
29 30 3.553096 GGGGATAGAAGTAGCGACATGTG 60.553 52.174 1.15 0.00 0.00 3.21
30 31 3.068307 GGGATAGAAGTAGCGACATGTGT 59.932 47.826 1.15 0.00 0.00 3.72
31 32 4.291783 GGATAGAAGTAGCGACATGTGTC 58.708 47.826 1.15 3.07 41.47 3.67
32 33 4.202020 GGATAGAAGTAGCGACATGTGTCA 60.202 45.833 1.15 0.00 44.99 3.58
33 34 2.947852 AGAAGTAGCGACATGTGTCAC 58.052 47.619 1.15 3.69 44.99 3.67
34 35 1.649171 GAAGTAGCGACATGTGTCACG 59.351 52.381 1.15 0.81 44.99 4.35
35 36 0.596577 AGTAGCGACATGTGTCACGT 59.403 50.000 1.15 0.00 44.99 4.49
36 37 1.808343 AGTAGCGACATGTGTCACGTA 59.192 47.619 1.15 0.00 44.99 3.57
37 38 2.159558 AGTAGCGACATGTGTCACGTAG 60.160 50.000 1.15 0.00 44.99 3.51
38 39 0.879090 AGCGACATGTGTCACGTAGA 59.121 50.000 1.15 0.00 44.99 2.59
39 40 1.472878 AGCGACATGTGTCACGTAGAT 59.527 47.619 1.15 0.00 44.99 1.98
40 41 1.583856 GCGACATGTGTCACGTAGATG 59.416 52.381 1.15 0.00 44.99 2.90
41 42 2.185262 CGACATGTGTCACGTAGATGG 58.815 52.381 1.15 0.00 44.99 3.51
42 43 2.415491 CGACATGTGTCACGTAGATGGT 60.415 50.000 1.15 0.00 44.99 3.55
43 44 2.923655 GACATGTGTCACGTAGATGGTG 59.076 50.000 1.15 0.00 44.18 4.17
44 45 2.270923 CATGTGTCACGTAGATGGTGG 58.729 52.381 0.00 0.00 36.09 4.61
45 46 0.037697 TGTGTCACGTAGATGGTGGC 60.038 55.000 0.00 0.00 40.34 5.01
46 47 0.246635 GTGTCACGTAGATGGTGGCT 59.753 55.000 0.00 0.00 40.56 4.75
47 48 0.530744 TGTCACGTAGATGGTGGCTC 59.469 55.000 0.00 0.00 40.56 4.70
48 49 0.179108 GTCACGTAGATGGTGGCTCC 60.179 60.000 0.00 0.00 37.06 4.70
56 57 3.077907 TGGTGGCTCCAGGCTTAC 58.922 61.111 3.73 0.00 41.93 2.34
57 58 1.538876 TGGTGGCTCCAGGCTTACT 60.539 57.895 3.73 0.00 41.93 2.24
75 76 9.277783 AGGCTTACTGATATAATGCTTTGTAAG 57.722 33.333 0.00 0.00 38.81 2.34
76 77 8.507249 GGCTTACTGATATAATGCTTTGTAAGG 58.493 37.037 14.46 4.02 37.29 2.69
77 78 9.057089 GCTTACTGATATAATGCTTTGTAAGGT 57.943 33.333 14.46 7.83 37.29 3.50
80 81 8.894768 ACTGATATAATGCTTTGTAAGGTCTC 57.105 34.615 0.00 0.00 0.00 3.36
81 82 8.709308 ACTGATATAATGCTTTGTAAGGTCTCT 58.291 33.333 0.00 0.00 0.00 3.10
82 83 8.893219 TGATATAATGCTTTGTAAGGTCTCTG 57.107 34.615 0.00 0.00 0.00 3.35
83 84 8.704668 TGATATAATGCTTTGTAAGGTCTCTGA 58.295 33.333 0.00 0.00 0.00 3.27
84 85 9.202273 GATATAATGCTTTGTAAGGTCTCTGAG 57.798 37.037 0.00 0.00 0.00 3.35
85 86 5.489792 AATGCTTTGTAAGGTCTCTGAGA 57.510 39.130 2.58 2.58 0.00 3.27
86 87 4.955811 TGCTTTGTAAGGTCTCTGAGAA 57.044 40.909 9.31 0.00 0.00 2.87
87 88 5.489792 TGCTTTGTAAGGTCTCTGAGAAT 57.510 39.130 9.31 1.73 0.00 2.40
88 89 6.605471 TGCTTTGTAAGGTCTCTGAGAATA 57.395 37.500 9.31 0.76 0.00 1.75
89 90 7.004555 TGCTTTGTAAGGTCTCTGAGAATAA 57.995 36.000 9.31 0.00 0.00 1.40
90 91 7.624549 TGCTTTGTAAGGTCTCTGAGAATAAT 58.375 34.615 9.31 0.00 0.00 1.28
91 92 8.103305 TGCTTTGTAAGGTCTCTGAGAATAATT 58.897 33.333 9.31 4.81 0.00 1.40
92 93 9.601217 GCTTTGTAAGGTCTCTGAGAATAATTA 57.399 33.333 9.31 3.90 0.00 1.40
106 107 9.970395 CTGAGAATAATTAATAAAATGGCTGCA 57.030 29.630 0.50 0.00 0.00 4.41
109 110 9.211485 AGAATAATTAATAAAATGGCTGCATGC 57.789 29.630 11.82 11.82 41.94 4.06
110 111 8.905660 AATAATTAATAAAATGGCTGCATGCA 57.094 26.923 21.29 21.29 45.15 3.96
111 112 9.509956 AATAATTAATAAAATGGCTGCATGCAT 57.490 25.926 22.97 6.91 45.15 3.96
112 113 7.429636 AATTAATAAAATGGCTGCATGCATC 57.570 32.000 22.97 17.75 45.15 3.91
113 114 4.682778 AATAAAATGGCTGCATGCATCT 57.317 36.364 22.97 2.98 45.15 2.90
114 115 2.596904 AAAATGGCTGCATGCATCTC 57.403 45.000 22.97 13.85 45.15 2.75
115 116 0.750850 AAATGGCTGCATGCATCTCC 59.249 50.000 22.97 21.43 45.15 3.71
116 117 1.113517 AATGGCTGCATGCATCTCCC 61.114 55.000 22.97 18.47 45.15 4.30
117 118 2.124024 GGCTGCATGCATCTCCCA 60.124 61.111 22.97 0.00 45.15 4.37
118 119 1.755395 GGCTGCATGCATCTCCCAA 60.755 57.895 22.97 0.00 45.15 4.12
119 120 1.324740 GGCTGCATGCATCTCCCAAA 61.325 55.000 22.97 0.00 45.15 3.28
120 121 0.750850 GCTGCATGCATCTCCCAAAT 59.249 50.000 22.97 0.00 42.31 2.32
121 122 1.538204 GCTGCATGCATCTCCCAAATG 60.538 52.381 22.97 6.35 42.31 2.32
127 128 1.030457 GCATCTCCCAAATGCAGAGG 58.970 55.000 3.35 0.00 46.93 3.69
128 129 1.030457 CATCTCCCAAATGCAGAGGC 58.970 55.000 0.00 0.00 41.68 4.70
129 130 0.106318 ATCTCCCAAATGCAGAGGCC 60.106 55.000 0.00 0.00 40.13 5.19
130 131 1.000521 CTCCCAAATGCAGAGGCCA 60.001 57.895 5.01 0.00 40.13 5.36
131 132 1.000521 TCCCAAATGCAGAGGCCAG 60.001 57.895 5.01 0.00 40.13 4.85
132 133 2.056223 CCCAAATGCAGAGGCCAGG 61.056 63.158 5.01 0.00 40.13 4.45
133 134 2.056223 CCAAATGCAGAGGCCAGGG 61.056 63.158 5.01 0.00 40.13 4.45
134 135 2.056223 CAAATGCAGAGGCCAGGGG 61.056 63.158 5.01 0.00 40.13 4.79
135 136 2.551413 AAATGCAGAGGCCAGGGGT 61.551 57.895 5.01 0.00 40.13 4.95
136 137 1.214305 AAATGCAGAGGCCAGGGGTA 61.214 55.000 5.01 0.00 40.13 3.69
137 138 1.214305 AATGCAGAGGCCAGGGGTAA 61.214 55.000 5.01 0.00 40.13 2.85
138 139 0.995675 ATGCAGAGGCCAGGGGTAAT 60.996 55.000 5.01 0.00 40.13 1.89
139 140 1.149401 GCAGAGGCCAGGGGTAATC 59.851 63.158 5.01 0.00 0.00 1.75
140 141 1.635817 GCAGAGGCCAGGGGTAATCA 61.636 60.000 5.01 0.00 0.00 2.57
141 142 1.143813 CAGAGGCCAGGGGTAATCAT 58.856 55.000 5.01 0.00 0.00 2.45
142 143 1.072965 CAGAGGCCAGGGGTAATCATC 59.927 57.143 5.01 0.00 0.00 2.92
143 144 0.402121 GAGGCCAGGGGTAATCATCC 59.598 60.000 5.01 0.00 0.00 3.51
144 145 0.028642 AGGCCAGGGGTAATCATCCT 60.029 55.000 5.01 0.00 0.00 3.24
145 146 0.853530 GGCCAGGGGTAATCATCCTT 59.146 55.000 0.00 0.00 0.00 3.36
146 147 1.217942 GGCCAGGGGTAATCATCCTTT 59.782 52.381 0.00 0.00 0.00 3.11
147 148 2.359249 GGCCAGGGGTAATCATCCTTTT 60.359 50.000 0.00 0.00 0.00 2.27
148 149 2.959030 GCCAGGGGTAATCATCCTTTTC 59.041 50.000 0.00 0.00 0.00 2.29
149 150 3.627237 GCCAGGGGTAATCATCCTTTTCA 60.627 47.826 0.00 0.00 0.00 2.69
150 151 4.609301 CCAGGGGTAATCATCCTTTTCAA 58.391 43.478 0.00 0.00 0.00 2.69
151 152 5.022787 CCAGGGGTAATCATCCTTTTCAAA 58.977 41.667 0.00 0.00 0.00 2.69
152 153 5.483583 CCAGGGGTAATCATCCTTTTCAAAA 59.516 40.000 0.00 0.00 0.00 2.44
153 154 6.156775 CCAGGGGTAATCATCCTTTTCAAAAT 59.843 38.462 0.00 0.00 0.00 1.82
154 155 7.344352 CCAGGGGTAATCATCCTTTTCAAAATA 59.656 37.037 0.00 0.00 0.00 1.40
155 156 8.757877 CAGGGGTAATCATCCTTTTCAAAATAA 58.242 33.333 0.00 0.00 0.00 1.40
156 157 9.332713 AGGGGTAATCATCCTTTTCAAAATAAA 57.667 29.630 0.00 0.00 0.00 1.40
157 158 9.952030 GGGGTAATCATCCTTTTCAAAATAAAA 57.048 29.630 0.00 0.00 0.00 1.52
189 190 8.978539 ACTATGCATAGTAACGTAAATGATGTG 58.021 33.333 33.00 6.49 41.55 3.21
273 274 1.429463 AACGCGGTTCTTGACTGATC 58.571 50.000 12.47 0.00 36.72 2.92
303 305 0.537143 TTCCTCAACGTGGCTGCATT 60.537 50.000 0.50 0.00 0.00 3.56
320 322 6.368791 GGCTGCATTGATCTCGTATAATGTAA 59.631 38.462 0.50 0.00 34.04 2.41
321 323 7.230222 GCTGCATTGATCTCGTATAATGTAAC 58.770 38.462 0.00 0.00 34.04 2.50
336 338 9.131791 GTATAATGTAACCCACCAATTCAGATT 57.868 33.333 0.00 0.00 0.00 2.40
337 339 5.920193 ATGTAACCCACCAATTCAGATTG 57.080 39.130 0.00 0.00 41.87 2.67
458 460 6.073058 TGCGGATGAATATCTTATTCACTTGC 60.073 38.462 11.11 13.66 40.37 4.01
497 499 6.347696 TCAAATTGCATCCCAATCATTTACC 58.652 36.000 0.00 0.00 43.22 2.85
502 504 3.003689 GCATCCCAATCATTTACCGACAG 59.996 47.826 0.00 0.00 0.00 3.51
540 542 9.865321 GTACTAATGTATGGACACAAGAGTTTA 57.135 33.333 0.00 0.00 38.76 2.01
673 675 2.762887 TGTTCCTGAAATGTGTTGCCAA 59.237 40.909 0.00 0.00 0.00 4.52
678 680 2.540931 CTGAAATGTGTTGCCAACTTGC 59.459 45.455 9.30 0.24 0.00 4.01
682 684 4.333913 AATGTGTTGCCAACTTGCATAA 57.666 36.364 9.30 0.00 41.70 1.90
808 815 5.509840 CCTTCTATCTTTAGGTATGCGCACT 60.510 44.000 14.90 8.52 0.00 4.40
813 820 5.270893 TCTTTAGGTATGCGCACTATCAA 57.729 39.130 14.90 1.15 0.00 2.57
819 826 5.611374 AGGTATGCGCACTATCAATTTACT 58.389 37.500 14.90 0.00 0.00 2.24
847 854 2.557056 CCACTTCTCCTTCTGTGTCGTA 59.443 50.000 0.00 0.00 0.00 3.43
850 857 2.941453 TCTCCTTCTGTGTCGTATGC 57.059 50.000 0.00 0.00 0.00 3.14
879 886 1.941325 AATCGATCTTGCTTCGGGTC 58.059 50.000 0.00 0.00 37.22 4.46
883 890 1.557651 GATCTTGCTTCGGGTCGTAC 58.442 55.000 0.00 0.00 0.00 3.67
884 891 0.175073 ATCTTGCTTCGGGTCGTACC 59.825 55.000 0.00 0.00 37.60 3.34
885 892 1.180456 TCTTGCTTCGGGTCGTACCA 61.180 55.000 6.41 0.00 41.02 3.25
886 893 0.108329 CTTGCTTCGGGTCGTACCAT 60.108 55.000 6.41 0.00 41.02 3.55
887 894 0.108520 TTGCTTCGGGTCGTACCATC 60.109 55.000 6.41 0.00 41.02 3.51
924 931 5.481824 TCTTTCAGGAAGTAGAGCTCATTGA 59.518 40.000 17.77 5.69 36.70 2.57
988 995 1.665679 GGTATCTGTGCACAACATCCG 59.334 52.381 21.98 8.13 38.39 4.18
990 997 0.606130 ATCTGTGCACAACATCCGCA 60.606 50.000 21.98 0.00 38.39 5.69
991 998 1.208358 CTGTGCACAACATCCGCAG 59.792 57.895 21.98 1.43 38.39 5.18
992 999 2.191354 CTGTGCACAACATCCGCAGG 62.191 60.000 21.98 0.63 41.93 4.85
1141 1159 2.478292 CACCCTTCCCTGGTGTATACT 58.522 52.381 4.17 0.00 46.62 2.12
1297 1315 7.386299 ACATAACTCACAGAATTCAGAACAGTC 59.614 37.037 8.44 0.00 0.00 3.51
1314 1332 5.808366 ACAGTCCTACAAATCTCTTGTGA 57.192 39.130 0.44 0.00 34.11 3.58
1318 1336 4.859798 GTCCTACAAATCTCTTGTGACTCG 59.140 45.833 0.44 0.00 34.11 4.18
1330 1348 1.269778 TGTGACTCGTTGCCTCTTCTG 60.270 52.381 0.00 0.00 0.00 3.02
1415 1434 2.674852 CAGATGAACGACATGAAGGGTG 59.325 50.000 0.00 0.00 39.56 4.61
1444 1463 5.186996 ACATTTCAACGTTGAGCAATTCT 57.813 34.783 28.21 12.25 38.61 2.40
1666 1692 2.260869 GGACGTGCTGCCATGTTGT 61.261 57.895 0.00 0.00 41.15 3.32
1680 1706 4.730613 GCCATGTTGTCGTTTATGCTTAGG 60.731 45.833 0.00 0.00 0.00 2.69
1731 1758 2.340673 GATGGGGCATCAGAGCTGCT 62.341 60.000 0.00 0.00 40.28 4.24
1798 1826 4.263462 GGACTAATGGGTGCATCATGGATA 60.263 45.833 0.00 0.00 0.00 2.59
1799 1827 5.316167 GACTAATGGGTGCATCATGGATAA 58.684 41.667 0.00 0.00 0.00 1.75
1800 1828 5.895807 ACTAATGGGTGCATCATGGATAAT 58.104 37.500 0.00 0.00 0.00 1.28
1801 1829 7.031415 ACTAATGGGTGCATCATGGATAATA 57.969 36.000 0.00 0.00 0.00 0.98
1802 1830 7.645942 ACTAATGGGTGCATCATGGATAATAT 58.354 34.615 0.00 0.00 0.00 1.28
1803 1831 8.780977 ACTAATGGGTGCATCATGGATAATATA 58.219 33.333 0.00 0.00 0.00 0.86
1804 1832 9.803507 CTAATGGGTGCATCATGGATAATATAT 57.196 33.333 0.00 0.00 0.00 0.86
1872 1910 3.006537 GCTATAGTACCCGGATTTCAGCA 59.993 47.826 0.73 0.00 0.00 4.41
1896 1934 3.442625 GGTTTTCGCTAATTAACCAGGCT 59.557 43.478 0.00 0.00 39.80 4.58
1993 2735 9.638239 ATGTGCTATTACAACAAATAGTTTTGG 57.362 29.630 3.76 0.00 40.23 3.28
2054 2796 5.819825 TTGACCATCCTCGAGATATATCG 57.180 43.478 15.71 13.48 44.07 2.92
2072 2814 3.537795 TCGGCCTATGGTATACTTCCT 57.462 47.619 0.00 0.00 0.00 3.36
2155 2897 6.592220 GCTAGAAGGAAGAAAACTACCAAGAG 59.408 42.308 0.00 0.00 0.00 2.85
2274 3022 6.317642 TGATATTCAACGTGAAATCCGGATTT 59.682 34.615 36.60 36.60 40.12 2.17
2284 3032 2.332063 ATCCGGATTTGTGTAGGCTG 57.668 50.000 12.38 0.00 0.00 4.85
2364 3112 7.225931 TGCATAGGAAATAGGAATACAAACGTC 59.774 37.037 0.00 0.00 0.00 4.34
2408 3156 8.257306 TCAAGTTTAGCTGAAAGGAAAACAATT 58.743 29.630 0.00 0.00 33.52 2.32
2467 3215 8.985315 ATATTATGATGCATGATAAATCCGGT 57.015 30.769 20.25 7.49 28.78 5.28
2468 3216 7.707624 ATTATGATGCATGATAAATCCGGTT 57.292 32.000 20.25 2.02 0.00 4.44
2480 3235 0.395312 ATCCGGTTGTCAGTTTCCGT 59.605 50.000 0.00 0.00 41.17 4.69
2496 3251 5.048294 AGTTTCCGTGGTAATTTGATTGGTC 60.048 40.000 0.00 0.00 0.00 4.02
2536 3291 0.247736 GAGGCTGTCGTGTTCTCCAT 59.752 55.000 0.00 0.00 0.00 3.41
2540 3295 2.159099 GGCTGTCGTGTTCTCCATATGA 60.159 50.000 3.65 0.00 0.00 2.15
2586 3341 6.471839 CGGGTAACGTTTATATGTTGTTGAG 58.528 40.000 5.91 0.00 35.23 3.02
2587 3342 6.091169 CGGGTAACGTTTATATGTTGTTGAGT 59.909 38.462 5.91 0.00 35.23 3.41
2588 3343 7.275341 CGGGTAACGTTTATATGTTGTTGAGTA 59.725 37.037 5.91 0.00 35.23 2.59
2589 3344 9.101655 GGGTAACGTTTATATGTTGTTGAGTAT 57.898 33.333 5.91 0.00 35.23 2.12
2616 3371 9.920946 AATGTTGAGTATAATGTTTATCTGGGT 57.079 29.630 0.00 0.00 0.00 4.51
2638 3393 6.726490 GTACTGATACCATGTTAGAAGGGA 57.274 41.667 0.00 0.00 0.00 4.20
2639 3394 5.878406 ACTGATACCATGTTAGAAGGGAG 57.122 43.478 0.00 0.00 0.00 4.30
2640 3395 5.529289 ACTGATACCATGTTAGAAGGGAGA 58.471 41.667 0.00 0.00 0.00 3.71
2644 3399 4.338795 ACCATGTTAGAAGGGAGAGAGA 57.661 45.455 0.00 0.00 0.00 3.10
2645 3400 4.285863 ACCATGTTAGAAGGGAGAGAGAG 58.714 47.826 0.00 0.00 0.00 3.20
2646 3401 3.640967 CCATGTTAGAAGGGAGAGAGAGG 59.359 52.174 0.00 0.00 0.00 3.69
2647 3402 4.541705 CATGTTAGAAGGGAGAGAGAGGA 58.458 47.826 0.00 0.00 0.00 3.71
2648 3403 4.890499 TGTTAGAAGGGAGAGAGAGGAT 57.110 45.455 0.00 0.00 0.00 3.24
2649 3404 5.213868 TGTTAGAAGGGAGAGAGAGGATT 57.786 43.478 0.00 0.00 0.00 3.01
2650 3405 4.959210 TGTTAGAAGGGAGAGAGAGGATTG 59.041 45.833 0.00 0.00 0.00 2.67
2651 3406 3.044873 AGAAGGGAGAGAGAGGATTGG 57.955 52.381 0.00 0.00 0.00 3.16
2653 3408 2.173126 AGGGAGAGAGAGGATTGGTG 57.827 55.000 0.00 0.00 0.00 4.17
2655 3410 1.343478 GGGAGAGAGAGGATTGGTGGA 60.343 57.143 0.00 0.00 0.00 4.02
2656 3411 2.472029 GGAGAGAGAGGATTGGTGGAA 58.528 52.381 0.00 0.00 0.00 3.53
2657 3412 3.044894 GGAGAGAGAGGATTGGTGGAAT 58.955 50.000 0.00 0.00 0.00 3.01
2658 3413 4.227197 GGAGAGAGAGGATTGGTGGAATA 58.773 47.826 0.00 0.00 0.00 1.75
2659 3414 4.283212 GGAGAGAGAGGATTGGTGGAATAG 59.717 50.000 0.00 0.00 0.00 1.73
2660 3415 4.889780 AGAGAGAGGATTGGTGGAATAGT 58.110 43.478 0.00 0.00 0.00 2.12
2661 3416 5.284582 AGAGAGAGGATTGGTGGAATAGTT 58.715 41.667 0.00 0.00 0.00 2.24
2662 3417 5.728741 AGAGAGAGGATTGGTGGAATAGTTT 59.271 40.000 0.00 0.00 0.00 2.66
2664 3419 5.251700 AGAGAGGATTGGTGGAATAGTTTGT 59.748 40.000 0.00 0.00 0.00 2.83
2665 3420 5.892348 AGAGGATTGGTGGAATAGTTTGTT 58.108 37.500 0.00 0.00 0.00 2.83
2666 3421 5.946377 AGAGGATTGGTGGAATAGTTTGTTC 59.054 40.000 0.00 0.00 0.00 3.18
2667 3422 4.700213 AGGATTGGTGGAATAGTTTGTTCG 59.300 41.667 0.00 0.00 0.00 3.95
2668 3423 4.457949 GGATTGGTGGAATAGTTTGTTCGT 59.542 41.667 0.00 0.00 0.00 3.85
2669 3424 5.048294 GGATTGGTGGAATAGTTTGTTCGTT 60.048 40.000 0.00 0.00 0.00 3.85
2670 3425 4.822036 TGGTGGAATAGTTTGTTCGTTG 57.178 40.909 0.00 0.00 0.00 4.10
2672 3427 5.366460 TGGTGGAATAGTTTGTTCGTTGTA 58.634 37.500 0.00 0.00 0.00 2.41
2673 3428 5.998981 TGGTGGAATAGTTTGTTCGTTGTAT 59.001 36.000 0.00 0.00 0.00 2.29
2674 3429 6.487331 TGGTGGAATAGTTTGTTCGTTGTATT 59.513 34.615 0.00 0.00 0.00 1.89
2675 3430 6.799925 GGTGGAATAGTTTGTTCGTTGTATTG 59.200 38.462 0.00 0.00 0.00 1.90
2676 3431 6.304683 GTGGAATAGTTTGTTCGTTGTATTGC 59.695 38.462 0.00 0.00 0.00 3.56
2677 3432 6.205853 TGGAATAGTTTGTTCGTTGTATTGCT 59.794 34.615 0.00 0.00 0.00 3.91
2678 3433 7.081976 GGAATAGTTTGTTCGTTGTATTGCTT 58.918 34.615 0.00 0.00 0.00 3.91
2679 3434 7.060633 GGAATAGTTTGTTCGTTGTATTGCTTG 59.939 37.037 0.00 0.00 0.00 4.01
2680 3435 5.493133 AGTTTGTTCGTTGTATTGCTTGA 57.507 34.783 0.00 0.00 0.00 3.02
2681 3436 5.510671 AGTTTGTTCGTTGTATTGCTTGAG 58.489 37.500 0.00 0.00 0.00 3.02
2682 3437 3.536158 TGTTCGTTGTATTGCTTGAGC 57.464 42.857 0.00 0.00 42.50 4.26
2683 3438 2.225491 TGTTCGTTGTATTGCTTGAGCC 59.775 45.455 0.00 0.00 41.18 4.70
2684 3439 2.472695 TCGTTGTATTGCTTGAGCCT 57.527 45.000 0.00 0.00 41.18 4.58
2685 3440 2.346803 TCGTTGTATTGCTTGAGCCTC 58.653 47.619 0.00 0.00 41.18 4.70
2686 3441 1.061131 CGTTGTATTGCTTGAGCCTCG 59.939 52.381 0.00 0.00 41.18 4.63
2687 3442 2.076863 GTTGTATTGCTTGAGCCTCGT 58.923 47.619 0.00 0.00 41.18 4.18
2688 3443 1.725641 TGTATTGCTTGAGCCTCGTG 58.274 50.000 0.00 0.00 41.18 4.35
2689 3444 1.009829 GTATTGCTTGAGCCTCGTGG 58.990 55.000 0.00 0.00 41.18 4.94
2690 3445 0.107703 TATTGCTTGAGCCTCGTGGG 60.108 55.000 5.54 0.00 41.18 4.61
2704 3459 5.713792 CCTCGTGGGCATATATATAGGAG 57.286 47.826 8.56 1.89 0.00 3.69
2705 3460 5.141182 CCTCGTGGGCATATATATAGGAGT 58.859 45.833 8.56 0.00 0.00 3.85
2706 3461 6.304624 CCTCGTGGGCATATATATAGGAGTA 58.695 44.000 8.56 0.00 0.00 2.59
2707 3462 6.207025 CCTCGTGGGCATATATATAGGAGTAC 59.793 46.154 8.56 2.84 0.00 2.73
2708 3463 6.665695 TCGTGGGCATATATATAGGAGTACA 58.334 40.000 8.56 0.00 0.00 2.90
2709 3464 7.120716 TCGTGGGCATATATATAGGAGTACAA 58.879 38.462 8.56 0.00 0.00 2.41
2710 3465 7.783119 TCGTGGGCATATATATAGGAGTACAAT 59.217 37.037 8.56 0.00 0.00 2.71
2711 3466 7.867909 CGTGGGCATATATATAGGAGTACAATG 59.132 40.741 8.56 0.00 0.00 2.82
2712 3467 8.924303 GTGGGCATATATATAGGAGTACAATGA 58.076 37.037 8.56 0.00 0.00 2.57
2713 3468 9.674705 TGGGCATATATATAGGAGTACAATGAT 57.325 33.333 8.56 0.00 0.00 2.45
2723 3478 6.723298 AGGAGTACAATGATCTACTTGGAG 57.277 41.667 0.00 0.00 0.00 3.86
2724 3479 6.198639 AGGAGTACAATGATCTACTTGGAGT 58.801 40.000 0.00 0.00 0.00 3.85
2725 3480 7.355101 AGGAGTACAATGATCTACTTGGAGTA 58.645 38.462 0.00 0.00 0.00 2.59
2726 3481 7.285858 AGGAGTACAATGATCTACTTGGAGTAC 59.714 40.741 0.00 0.00 0.00 2.73
2727 3482 7.068348 GGAGTACAATGATCTACTTGGAGTACA 59.932 40.741 0.00 0.00 33.62 2.90
2728 3483 8.362464 AGTACAATGATCTACTTGGAGTACAA 57.638 34.615 0.00 0.00 37.55 2.41
2738 3493 2.839486 TGGAGTACAAGACAAGCCAG 57.161 50.000 0.00 0.00 0.00 4.85
2739 3494 2.325484 TGGAGTACAAGACAAGCCAGA 58.675 47.619 0.00 0.00 0.00 3.86
2740 3495 2.703536 TGGAGTACAAGACAAGCCAGAA 59.296 45.455 0.00 0.00 0.00 3.02
2741 3496 3.327757 TGGAGTACAAGACAAGCCAGAAT 59.672 43.478 0.00 0.00 0.00 2.40
2742 3497 4.530553 TGGAGTACAAGACAAGCCAGAATA 59.469 41.667 0.00 0.00 0.00 1.75
2743 3498 5.012664 TGGAGTACAAGACAAGCCAGAATAA 59.987 40.000 0.00 0.00 0.00 1.40
2744 3499 5.938125 GGAGTACAAGACAAGCCAGAATAAA 59.062 40.000 0.00 0.00 0.00 1.40
2745 3500 6.599638 GGAGTACAAGACAAGCCAGAATAAAT 59.400 38.462 0.00 0.00 0.00 1.40
2746 3501 7.201652 GGAGTACAAGACAAGCCAGAATAAATC 60.202 40.741 0.00 0.00 0.00 2.17
2747 3502 5.904362 ACAAGACAAGCCAGAATAAATCC 57.096 39.130 0.00 0.00 0.00 3.01
2748 3503 5.574188 ACAAGACAAGCCAGAATAAATCCT 58.426 37.500 0.00 0.00 0.00 3.24
2749 3504 6.721318 ACAAGACAAGCCAGAATAAATCCTA 58.279 36.000 0.00 0.00 0.00 2.94
2750 3505 6.825721 ACAAGACAAGCCAGAATAAATCCTAG 59.174 38.462 0.00 0.00 0.00 3.02
2751 3506 6.567602 AGACAAGCCAGAATAAATCCTAGT 57.432 37.500 0.00 0.00 0.00 2.57
2752 3507 6.587273 AGACAAGCCAGAATAAATCCTAGTC 58.413 40.000 0.00 0.00 0.00 2.59
2753 3508 6.385467 AGACAAGCCAGAATAAATCCTAGTCT 59.615 38.462 0.00 0.00 0.00 3.24
2754 3509 7.565398 AGACAAGCCAGAATAAATCCTAGTCTA 59.435 37.037 0.00 0.00 0.00 2.59
2755 3510 8.268878 ACAAGCCAGAATAAATCCTAGTCTAT 57.731 34.615 0.00 0.00 0.00 1.98
2756 3511 8.371699 ACAAGCCAGAATAAATCCTAGTCTATC 58.628 37.037 0.00 0.00 0.00 2.08
2757 3512 8.592809 CAAGCCAGAATAAATCCTAGTCTATCT 58.407 37.037 0.00 0.00 0.00 1.98
2758 3513 8.361169 AGCCAGAATAAATCCTAGTCTATCTC 57.639 38.462 0.00 0.00 0.00 2.75
2759 3514 7.122055 AGCCAGAATAAATCCTAGTCTATCTCG 59.878 40.741 0.00 0.00 0.00 4.04
2760 3515 7.094118 GCCAGAATAAATCCTAGTCTATCTCGT 60.094 40.741 0.00 0.00 0.00 4.18
2761 3516 8.455682 CCAGAATAAATCCTAGTCTATCTCGTC 58.544 40.741 0.00 0.00 0.00 4.20
2762 3517 9.226606 CAGAATAAATCCTAGTCTATCTCGTCT 57.773 37.037 0.00 0.00 0.00 4.18
2763 3518 9.802039 AGAATAAATCCTAGTCTATCTCGTCTT 57.198 33.333 0.00 0.00 0.00 3.01
2766 3521 6.887626 AATCCTAGTCTATCTCGTCTTTCC 57.112 41.667 0.00 0.00 0.00 3.13
2767 3522 5.633655 TCCTAGTCTATCTCGTCTTTCCT 57.366 43.478 0.00 0.00 0.00 3.36
2768 3523 6.744175 TCCTAGTCTATCTCGTCTTTCCTA 57.256 41.667 0.00 0.00 0.00 2.94
2769 3524 7.134362 TCCTAGTCTATCTCGTCTTTCCTAA 57.866 40.000 0.00 0.00 0.00 2.69
2770 3525 7.747690 TCCTAGTCTATCTCGTCTTTCCTAAT 58.252 38.462 0.00 0.00 0.00 1.73
2771 3526 8.878211 TCCTAGTCTATCTCGTCTTTCCTAATA 58.122 37.037 0.00 0.00 0.00 0.98
2772 3527 9.504708 CCTAGTCTATCTCGTCTTTCCTAATAA 57.495 37.037 0.00 0.00 0.00 1.40
2775 3530 9.186837 AGTCTATCTCGTCTTTCCTAATAAACA 57.813 33.333 0.00 0.00 0.00 2.83
2776 3531 9.968870 GTCTATCTCGTCTTTCCTAATAAACAT 57.031 33.333 0.00 0.00 0.00 2.71
2806 3561 5.766174 TCAACAAACAGGTAATTCAGTACCC 59.234 40.000 0.00 0.00 44.11 3.69
2876 3631 6.231258 TGAGAGCATGATCACATAGAGTTT 57.769 37.500 14.38 0.00 35.09 2.66
2898 3653 9.023962 AGTTTTCTCAGGTGCATATTATCAAAA 57.976 29.630 0.00 0.00 0.00 2.44
3062 3852 3.397482 GCCATAGACGAAGCAGATGAAT 58.603 45.455 0.00 0.00 0.00 2.57
3064 3854 4.624882 GCCATAGACGAAGCAGATGAATAG 59.375 45.833 0.00 0.00 0.00 1.73
3066 3856 6.450545 CCATAGACGAAGCAGATGAATAGAA 58.549 40.000 0.00 0.00 0.00 2.10
3067 3857 6.925718 CCATAGACGAAGCAGATGAATAGAAA 59.074 38.462 0.00 0.00 0.00 2.52
3076 3866 4.503991 GCAGATGAATAGAAAGGGGACGAT 60.504 45.833 0.00 0.00 0.00 3.73
3124 3914 2.863809 ACACAAGTTTAGGGGCAAGAG 58.136 47.619 0.00 0.00 0.00 2.85
3152 3942 7.283625 ACCACAACTCTATGCAATTTTAACA 57.716 32.000 0.00 0.00 0.00 2.41
3223 4013 3.836949 TCTACCGGTTGAACACGAATAC 58.163 45.455 15.04 0.00 0.00 1.89
3243 4033 1.550179 CGATGATAGGGCCCCACTAGA 60.550 57.143 21.43 0.00 0.00 2.43
3246 4036 1.009060 TGATAGGGCCCCACTAGACAA 59.991 52.381 21.43 0.00 0.00 3.18
3257 4049 4.755123 CCCCACTAGACAAACACAAAGTAG 59.245 45.833 0.00 0.00 0.00 2.57
3261 4053 5.815740 CACTAGACAAACACAAAGTAGTGGT 59.184 40.000 0.00 0.00 42.26 4.16
3304 4096 5.278561 CCCATGTTTGCAAAGCATCAATTTT 60.279 36.000 13.26 0.00 44.89 1.82
3311 4103 6.297694 TGCAAAGCATCAATTTTAACAACC 57.702 33.333 0.00 0.00 31.71 3.77
3316 4108 5.923204 AGCATCAATTTTAACAACCCACAA 58.077 33.333 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.669536 GCTACTTCTATCCCCTTGATGC 58.330 50.000 0.00 0.00 34.76 3.91
1 2 3.574396 TCGCTACTTCTATCCCCTTGATG 59.426 47.826 0.00 0.00 34.76 3.07
2 3 3.574826 GTCGCTACTTCTATCCCCTTGAT 59.425 47.826 0.00 0.00 37.49 2.57
3 4 2.957006 GTCGCTACTTCTATCCCCTTGA 59.043 50.000 0.00 0.00 0.00 3.02
4 5 2.693591 TGTCGCTACTTCTATCCCCTTG 59.306 50.000 0.00 0.00 0.00 3.61
5 6 3.028094 TGTCGCTACTTCTATCCCCTT 57.972 47.619 0.00 0.00 0.00 3.95
6 7 2.750141 TGTCGCTACTTCTATCCCCT 57.250 50.000 0.00 0.00 0.00 4.79
7 8 2.628657 ACATGTCGCTACTTCTATCCCC 59.371 50.000 0.00 0.00 0.00 4.81
8 9 3.068307 ACACATGTCGCTACTTCTATCCC 59.932 47.826 0.00 0.00 0.00 3.85
9 10 4.291783 GACACATGTCGCTACTTCTATCC 58.708 47.826 0.00 0.00 35.12 2.59
22 23 2.923655 CACCATCTACGTGACACATGTC 59.076 50.000 6.37 5.02 44.97 3.06
23 24 2.353704 CCACCATCTACGTGACACATGT 60.354 50.000 6.37 0.00 37.38 3.21
24 25 2.270923 CCACCATCTACGTGACACATG 58.729 52.381 6.37 1.70 32.77 3.21
25 26 1.405526 GCCACCATCTACGTGACACAT 60.406 52.381 6.37 0.00 32.77 3.21
26 27 0.037697 GCCACCATCTACGTGACACA 60.038 55.000 6.37 0.00 32.77 3.72
27 28 0.246635 AGCCACCATCTACGTGACAC 59.753 55.000 0.00 0.00 32.77 3.67
28 29 0.530744 GAGCCACCATCTACGTGACA 59.469 55.000 0.00 0.00 32.77 3.58
29 30 0.179108 GGAGCCACCATCTACGTGAC 60.179 60.000 0.00 0.00 38.79 3.67
30 31 0.613572 TGGAGCCACCATCTACGTGA 60.614 55.000 0.00 0.00 44.64 4.35
31 32 1.897423 TGGAGCCACCATCTACGTG 59.103 57.895 0.00 0.00 44.64 4.49
32 33 4.453454 TGGAGCCACCATCTACGT 57.547 55.556 0.00 0.00 44.64 3.57
40 41 1.078143 CAGTAAGCCTGGAGCCACC 60.078 63.158 0.00 0.00 45.47 4.61
41 42 0.543749 ATCAGTAAGCCTGGAGCCAC 59.456 55.000 0.00 0.00 45.47 5.01
42 43 2.174685 TATCAGTAAGCCTGGAGCCA 57.825 50.000 0.00 0.00 45.47 4.75
43 44 4.891992 TTATATCAGTAAGCCTGGAGCC 57.108 45.455 0.00 0.00 45.47 4.70
44 45 4.633565 GCATTATATCAGTAAGCCTGGAGC 59.366 45.833 0.00 0.00 41.83 4.70
45 46 6.047511 AGCATTATATCAGTAAGCCTGGAG 57.952 41.667 0.00 0.00 41.83 3.86
46 47 6.439636 AAGCATTATATCAGTAAGCCTGGA 57.560 37.500 0.00 0.00 41.83 3.86
47 48 6.488006 ACAAAGCATTATATCAGTAAGCCTGG 59.512 38.462 0.00 0.00 41.83 4.45
48 49 7.502120 ACAAAGCATTATATCAGTAAGCCTG 57.498 36.000 0.00 0.00 42.97 4.85
49 50 9.277783 CTTACAAAGCATTATATCAGTAAGCCT 57.722 33.333 0.00 0.00 33.35 4.58
50 51 8.507249 CCTTACAAAGCATTATATCAGTAAGCC 58.493 37.037 0.00 0.00 37.13 4.35
51 52 9.057089 ACCTTACAAAGCATTATATCAGTAAGC 57.943 33.333 0.00 0.00 37.13 3.09
54 55 9.982651 GAGACCTTACAAAGCATTATATCAGTA 57.017 33.333 0.00 0.00 0.00 2.74
55 56 8.709308 AGAGACCTTACAAAGCATTATATCAGT 58.291 33.333 0.00 0.00 0.00 3.41
56 57 8.986847 CAGAGACCTTACAAAGCATTATATCAG 58.013 37.037 0.00 0.00 0.00 2.90
57 58 8.704668 TCAGAGACCTTACAAAGCATTATATCA 58.295 33.333 0.00 0.00 0.00 2.15
58 59 9.202273 CTCAGAGACCTTACAAAGCATTATATC 57.798 37.037 0.00 0.00 0.00 1.63
59 60 8.928448 TCTCAGAGACCTTACAAAGCATTATAT 58.072 33.333 0.00 0.00 0.00 0.86
60 61 8.306313 TCTCAGAGACCTTACAAAGCATTATA 57.694 34.615 0.00 0.00 0.00 0.98
61 62 7.187824 TCTCAGAGACCTTACAAAGCATTAT 57.812 36.000 0.00 0.00 0.00 1.28
62 63 6.605471 TCTCAGAGACCTTACAAAGCATTA 57.395 37.500 0.00 0.00 0.00 1.90
63 64 5.489792 TCTCAGAGACCTTACAAAGCATT 57.510 39.130 0.00 0.00 0.00 3.56
64 65 5.489792 TTCTCAGAGACCTTACAAAGCAT 57.510 39.130 0.00 0.00 0.00 3.79
65 66 4.955811 TTCTCAGAGACCTTACAAAGCA 57.044 40.909 0.00 0.00 0.00 3.91
66 67 8.499403 AATTATTCTCAGAGACCTTACAAAGC 57.501 34.615 0.00 0.00 0.00 3.51
80 81 9.970395 TGCAGCCATTTTATTAATTATTCTCAG 57.030 29.630 0.00 0.00 0.00 3.35
83 84 9.211485 GCATGCAGCCATTTTATTAATTATTCT 57.789 29.630 14.21 0.00 37.23 2.40
84 85 8.991026 TGCATGCAGCCATTTTATTAATTATTC 58.009 29.630 18.46 0.00 44.83 1.75
85 86 8.905660 TGCATGCAGCCATTTTATTAATTATT 57.094 26.923 18.46 0.00 44.83 1.40
86 87 9.158233 GATGCATGCAGCCATTTTATTAATTAT 57.842 29.630 25.21 0.54 44.83 1.28
87 88 8.369424 AGATGCATGCAGCCATTTTATTAATTA 58.631 29.630 30.96 0.00 44.83 1.40
88 89 7.221450 AGATGCATGCAGCCATTTTATTAATT 58.779 30.769 30.96 5.99 44.83 1.40
89 90 6.765403 AGATGCATGCAGCCATTTTATTAAT 58.235 32.000 30.96 6.33 44.83 1.40
90 91 6.164417 AGATGCATGCAGCCATTTTATTAA 57.836 33.333 30.96 0.00 44.83 1.40
91 92 5.279106 GGAGATGCATGCAGCCATTTTATTA 60.279 40.000 30.96 0.00 44.83 0.98
92 93 4.502604 GGAGATGCATGCAGCCATTTTATT 60.503 41.667 30.96 11.11 44.83 1.40
93 94 3.006537 GGAGATGCATGCAGCCATTTTAT 59.993 43.478 30.96 11.90 44.83 1.40
94 95 2.363038 GGAGATGCATGCAGCCATTTTA 59.637 45.455 30.96 1.12 44.83 1.52
95 96 1.138266 GGAGATGCATGCAGCCATTTT 59.862 47.619 30.96 13.48 44.83 1.82
96 97 0.750850 GGAGATGCATGCAGCCATTT 59.249 50.000 30.96 13.89 44.83 2.32
97 98 1.113517 GGGAGATGCATGCAGCCATT 61.114 55.000 30.96 14.29 44.83 3.16
98 99 1.530891 GGGAGATGCATGCAGCCAT 60.531 57.895 30.96 15.09 44.83 4.40
99 100 2.124024 GGGAGATGCATGCAGCCA 60.124 61.111 30.96 4.92 44.83 4.75
100 101 1.324740 TTTGGGAGATGCATGCAGCC 61.325 55.000 30.96 25.93 44.83 4.85
101 102 0.750850 ATTTGGGAGATGCATGCAGC 59.249 50.000 27.98 27.98 45.96 5.25
102 103 1.538204 GCATTTGGGAGATGCATGCAG 60.538 52.381 26.69 9.14 46.96 4.41
103 104 0.462375 GCATTTGGGAGATGCATGCA 59.538 50.000 25.04 25.04 46.96 3.96
104 105 3.284197 GCATTTGGGAGATGCATGC 57.716 52.632 11.82 11.82 46.96 4.06
108 109 1.030457 CCTCTGCATTTGGGAGATGC 58.970 55.000 1.66 2.31 43.58 3.91
109 110 1.030457 GCCTCTGCATTTGGGAGATG 58.970 55.000 1.66 0.00 43.58 2.90
110 111 0.106318 GGCCTCTGCATTTGGGAGAT 60.106 55.000 0.00 0.00 43.58 2.75
111 112 1.304282 GGCCTCTGCATTTGGGAGA 59.696 57.895 0.00 0.00 42.24 3.71
112 113 1.000521 TGGCCTCTGCATTTGGGAG 60.001 57.895 3.32 0.00 40.13 4.30
113 114 1.000521 CTGGCCTCTGCATTTGGGA 60.001 57.895 3.32 0.00 40.13 4.37
114 115 2.056223 CCTGGCCTCTGCATTTGGG 61.056 63.158 3.32 0.00 40.13 4.12
115 116 2.056223 CCCTGGCCTCTGCATTTGG 61.056 63.158 3.32 0.00 40.13 3.28
116 117 2.056223 CCCCTGGCCTCTGCATTTG 61.056 63.158 3.32 0.00 40.13 2.32
117 118 1.214305 TACCCCTGGCCTCTGCATTT 61.214 55.000 3.32 0.00 40.13 2.32
118 119 1.214305 TTACCCCTGGCCTCTGCATT 61.214 55.000 3.32 0.00 40.13 3.56
119 120 0.995675 ATTACCCCTGGCCTCTGCAT 60.996 55.000 3.32 0.00 40.13 3.96
120 121 1.619363 ATTACCCCTGGCCTCTGCA 60.619 57.895 3.32 0.00 40.13 4.41
121 122 1.149401 GATTACCCCTGGCCTCTGC 59.851 63.158 3.32 0.00 0.00 4.26
122 123 1.072965 GATGATTACCCCTGGCCTCTG 59.927 57.143 3.32 0.00 0.00 3.35
123 124 1.439543 GATGATTACCCCTGGCCTCT 58.560 55.000 3.32 0.00 0.00 3.69
124 125 0.402121 GGATGATTACCCCTGGCCTC 59.598 60.000 3.32 0.00 0.00 4.70
125 126 0.028642 AGGATGATTACCCCTGGCCT 60.029 55.000 3.32 0.00 0.00 5.19
126 127 0.853530 AAGGATGATTACCCCTGGCC 59.146 55.000 0.00 0.00 0.00 5.36
127 128 2.755952 AAAGGATGATTACCCCTGGC 57.244 50.000 0.00 0.00 0.00 4.85
128 129 4.249638 TGAAAAGGATGATTACCCCTGG 57.750 45.455 0.00 0.00 0.00 4.45
129 130 6.603940 TTTTGAAAAGGATGATTACCCCTG 57.396 37.500 0.00 0.00 0.00 4.45
130 131 8.909423 TTATTTTGAAAAGGATGATTACCCCT 57.091 30.769 0.00 0.00 0.00 4.79
131 132 9.952030 TTTTATTTTGAAAAGGATGATTACCCC 57.048 29.630 0.00 0.00 0.00 4.95
162 163 9.542462 ACATCATTTACGTTACTATGCATAGTT 57.458 29.630 37.12 24.37 43.06 2.24
170 171 9.485206 GGTATTCCACATCATTTACGTTACTAT 57.515 33.333 0.00 0.00 0.00 2.12
189 190 0.746923 GCCAACTGGTCGGGTATTCC 60.747 60.000 0.00 0.00 37.57 3.01
273 274 1.466167 CGTTGAGGAACATGGCTCTTG 59.534 52.381 0.00 0.00 31.78 3.02
303 305 5.599242 TGGTGGGTTACATTATACGAGATCA 59.401 40.000 0.00 0.00 0.00 2.92
336 338 1.324383 TTGACAGACACGAGCTACCA 58.676 50.000 0.00 0.00 0.00 3.25
337 339 2.059541 GTTTGACAGACACGAGCTACC 58.940 52.381 0.00 0.00 0.00 3.18
338 340 2.739292 TGTTTGACAGACACGAGCTAC 58.261 47.619 0.00 0.00 0.00 3.58
458 460 6.756176 TGCAATTTGAAACAGTAAACAAACG 58.244 32.000 0.00 0.00 35.58 3.60
497 499 6.706055 TTAGTACTTTGATTTGAGCTGTCG 57.294 37.500 0.00 0.00 0.00 4.35
502 504 9.109393 TCCATACATTAGTACTTTGATTTGAGC 57.891 33.333 0.00 0.00 31.96 4.26
529 531 4.556233 TCTGTCGACCATAAACTCTTGTG 58.444 43.478 14.12 0.00 0.00 3.33
540 542 5.575157 AGACTATATGGATCTGTCGACCAT 58.425 41.667 14.12 11.29 44.94 3.55
678 680 4.574599 GCCTTATTTGCCAGGACTTATG 57.425 45.455 0.00 0.00 30.81 1.90
701 703 5.533903 GCATTAAAGACATCATCCACAGGAT 59.466 40.000 0.00 0.00 44.21 3.24
795 802 6.755206 AGTAAATTGATAGTGCGCATACCTA 58.245 36.000 15.91 11.41 0.00 3.08
813 820 7.621683 AGAAGGAGAAGTGGTAGATGAGTAAAT 59.378 37.037 0.00 0.00 0.00 1.40
819 826 4.464244 CACAGAAGGAGAAGTGGTAGATGA 59.536 45.833 0.00 0.00 0.00 2.92
847 854 4.427096 AGATCGATTTCTCGTATCGCAT 57.573 40.909 0.00 0.00 45.25 4.73
850 857 4.222886 AGCAAGATCGATTTCTCGTATCG 58.777 43.478 0.00 0.00 45.25 2.92
856 863 2.541762 CCCGAAGCAAGATCGATTTCTC 59.458 50.000 0.00 0.00 42.76 2.87
869 876 1.514087 GATGGTACGACCCGAAGCA 59.486 57.895 0.00 0.00 37.50 3.91
879 886 4.271049 AGAATTTTCATCAGCGATGGTACG 59.729 41.667 15.33 0.00 40.15 3.67
883 890 5.643664 TGAAAGAATTTTCATCAGCGATGG 58.356 37.500 15.33 0.00 45.77 3.51
924 931 2.949447 AGCACAAGAAACCAAGGTGAT 58.051 42.857 0.00 0.00 0.00 3.06
995 1002 5.163683 CCTTTCATCTTGTAAGCCATCTGTG 60.164 44.000 0.00 0.00 0.00 3.66
996 1003 4.946157 CCTTTCATCTTGTAAGCCATCTGT 59.054 41.667 0.00 0.00 0.00 3.41
997 1004 4.337555 CCCTTTCATCTTGTAAGCCATCTG 59.662 45.833 0.00 0.00 0.00 2.90
998 1005 4.530875 CCCTTTCATCTTGTAAGCCATCT 58.469 43.478 0.00 0.00 0.00 2.90
1141 1159 2.432146 CTCCTTCACCACTGCTAGCATA 59.568 50.000 19.72 0.00 0.00 3.14
1297 1315 4.810790 ACGAGTCACAAGAGATTTGTAGG 58.189 43.478 0.00 0.00 0.00 3.18
1314 1332 1.270907 ATCCAGAAGAGGCAACGAGT 58.729 50.000 0.00 0.00 46.39 4.18
1318 1336 3.481453 GGGATTATCCAGAAGAGGCAAC 58.519 50.000 13.78 0.00 38.64 4.17
1330 1348 4.387026 TCATGACCAATGGGGATTATCC 57.613 45.455 3.55 1.91 41.15 2.59
1384 1403 6.371271 TCATGTCGTTCATCTGCAAATTAAGA 59.629 34.615 0.00 0.00 34.09 2.10
1415 1434 0.309612 AACGTTGAAATGTCCGGTGC 59.690 50.000 0.00 0.00 0.00 5.01
1444 1463 2.358932 GGAGGTACCTGTAGATGGTCCA 60.359 54.545 22.10 0.00 38.88 4.02
1587 1608 8.001881 ACACATTCCACTATAAACAAAACACA 57.998 30.769 0.00 0.00 0.00 3.72
1694 1720 9.717994 TGCCCCATCATGATTATTAATAATGAT 57.282 29.630 22.48 18.15 46.11 2.45
1697 1723 9.717994 TGATGCCCCATCATGATTATTAATAAT 57.282 29.630 18.55 18.55 44.60 1.28
1731 1758 5.478332 TGTTTAATACCAATCATGTGTGCCA 59.522 36.000 0.00 0.00 0.00 4.92
1872 1910 4.014406 CCTGGTTAATTAGCGAAAACCCT 58.986 43.478 9.76 0.00 40.57 4.34
1985 2700 0.845337 ACCGGTGGTTCCCAAAACTA 59.155 50.000 6.12 0.00 34.18 2.24
1993 2735 1.268625 GACAAATCAACCGGTGGTTCC 59.731 52.381 8.52 0.00 43.05 3.62
2004 2746 5.240891 TGCAAAACAACTTGGACAAATCAA 58.759 33.333 0.00 0.00 0.00 2.57
2054 2796 5.562298 TTTCAGGAAGTATACCATAGGCC 57.438 43.478 0.00 0.00 0.00 5.19
2072 2814 5.188163 TGTTGATCCCGGACTACTATTTTCA 59.812 40.000 0.73 0.00 0.00 2.69
2145 2887 0.037232 GGCGAACTGCTCTTGGTAGT 60.037 55.000 0.00 0.00 45.43 2.73
2274 3022 3.550820 ACAAAACATGACAGCCTACACA 58.449 40.909 0.00 0.00 0.00 3.72
2284 3032 4.149598 AGAAAGGGGGTACAAAACATGAC 58.850 43.478 0.00 0.00 0.00 3.06
2317 3065 7.444558 TGCAAAGTCGTTTTTCAAATACTTC 57.555 32.000 0.00 0.00 0.00 3.01
2333 3081 8.677148 TGTATTCCTATTTCCTATGCAAAGTC 57.323 34.615 0.00 0.00 0.00 3.01
2408 3156 4.365514 TGACATCCTTCCTAACTTTGCA 57.634 40.909 0.00 0.00 0.00 4.08
2461 3209 3.226884 CGGAAACTGACAACCGGAT 57.773 52.632 9.46 0.00 41.41 4.18
2465 3213 2.243602 TACCACGGAAACTGACAACC 57.756 50.000 0.00 0.00 0.00 3.77
2466 3214 4.823790 AATTACCACGGAAACTGACAAC 57.176 40.909 0.00 0.00 0.00 3.32
2467 3215 4.882427 TCAAATTACCACGGAAACTGACAA 59.118 37.500 0.00 0.00 0.00 3.18
2468 3216 4.452825 TCAAATTACCACGGAAACTGACA 58.547 39.130 0.00 0.00 0.00 3.58
2480 3235 6.244654 TGATCAGTGACCAATCAAATTACCA 58.755 36.000 0.00 0.00 36.31 3.25
2562 3317 6.091169 ACTCAACAACATATAAACGTTACCCG 59.909 38.462 0.00 0.00 44.03 5.28
2590 3345 9.920946 ACCCAGATAAACATTATACTCAACATT 57.079 29.630 0.00 0.00 0.00 2.71
2592 3347 9.826574 GTACCCAGATAAACATTATACTCAACA 57.173 33.333 0.00 0.00 0.00 3.33
2595 3350 9.429109 TCAGTACCCAGATAAACATTATACTCA 57.571 33.333 0.00 0.00 0.00 3.41
2616 3371 6.679542 TCTCCCTTCTAACATGGTATCAGTA 58.320 40.000 0.00 0.00 0.00 2.74
2617 3372 5.529289 TCTCCCTTCTAACATGGTATCAGT 58.471 41.667 0.00 0.00 0.00 3.41
2622 3377 5.450453 CTCTCTCTCCCTTCTAACATGGTA 58.550 45.833 0.00 0.00 0.00 3.25
2623 3378 4.285863 CTCTCTCTCCCTTCTAACATGGT 58.714 47.826 0.00 0.00 0.00 3.55
2624 3379 3.640967 CCTCTCTCTCCCTTCTAACATGG 59.359 52.174 0.00 0.00 0.00 3.66
2626 3381 4.890499 TCCTCTCTCTCCCTTCTAACAT 57.110 45.455 0.00 0.00 0.00 2.71
2627 3382 4.890499 ATCCTCTCTCTCCCTTCTAACA 57.110 45.455 0.00 0.00 0.00 2.41
2629 3384 4.016105 ACCAATCCTCTCTCTCCCTTCTAA 60.016 45.833 0.00 0.00 0.00 2.10
2631 3386 2.317594 ACCAATCCTCTCTCTCCCTTCT 59.682 50.000 0.00 0.00 0.00 2.85
2632 3387 2.433970 CACCAATCCTCTCTCTCCCTTC 59.566 54.545 0.00 0.00 0.00 3.46
2636 3391 2.166907 TCCACCAATCCTCTCTCTCC 57.833 55.000 0.00 0.00 0.00 3.71
2637 3392 4.898861 ACTATTCCACCAATCCTCTCTCTC 59.101 45.833 0.00 0.00 0.00 3.20
2638 3393 4.889780 ACTATTCCACCAATCCTCTCTCT 58.110 43.478 0.00 0.00 0.00 3.10
2639 3394 5.622346 AACTATTCCACCAATCCTCTCTC 57.378 43.478 0.00 0.00 0.00 3.20
2640 3395 5.251700 ACAAACTATTCCACCAATCCTCTCT 59.748 40.000 0.00 0.00 0.00 3.10
2644 3399 4.700213 CGAACAAACTATTCCACCAATCCT 59.300 41.667 0.00 0.00 0.00 3.24
2645 3400 4.457949 ACGAACAAACTATTCCACCAATCC 59.542 41.667 0.00 0.00 0.00 3.01
2646 3401 5.622770 ACGAACAAACTATTCCACCAATC 57.377 39.130 0.00 0.00 0.00 2.67
2647 3402 5.300792 ACAACGAACAAACTATTCCACCAAT 59.699 36.000 0.00 0.00 0.00 3.16
2648 3403 4.641094 ACAACGAACAAACTATTCCACCAA 59.359 37.500 0.00 0.00 0.00 3.67
2649 3404 4.200874 ACAACGAACAAACTATTCCACCA 58.799 39.130 0.00 0.00 0.00 4.17
2650 3405 4.823790 ACAACGAACAAACTATTCCACC 57.176 40.909 0.00 0.00 0.00 4.61
2651 3406 6.304683 GCAATACAACGAACAAACTATTCCAC 59.695 38.462 0.00 0.00 0.00 4.02
2653 3408 6.608610 AGCAATACAACGAACAAACTATTCC 58.391 36.000 0.00 0.00 0.00 3.01
2655 3410 7.644490 TCAAGCAATACAACGAACAAACTATT 58.356 30.769 0.00 0.00 0.00 1.73
2656 3411 7.197071 TCAAGCAATACAACGAACAAACTAT 57.803 32.000 0.00 0.00 0.00 2.12
2657 3412 6.606234 TCAAGCAATACAACGAACAAACTA 57.394 33.333 0.00 0.00 0.00 2.24
2658 3413 5.493133 TCAAGCAATACAACGAACAAACT 57.507 34.783 0.00 0.00 0.00 2.66
2659 3414 4.146443 GCTCAAGCAATACAACGAACAAAC 59.854 41.667 0.00 0.00 41.59 2.93
2660 3415 4.286910 GCTCAAGCAATACAACGAACAAA 58.713 39.130 0.00 0.00 41.59 2.83
2661 3416 3.304391 GGCTCAAGCAATACAACGAACAA 60.304 43.478 4.13 0.00 44.36 2.83
2662 3417 2.225491 GGCTCAAGCAATACAACGAACA 59.775 45.455 4.13 0.00 44.36 3.18
2664 3419 2.742053 GAGGCTCAAGCAATACAACGAA 59.258 45.455 10.25 0.00 44.36 3.85
2665 3420 2.346803 GAGGCTCAAGCAATACAACGA 58.653 47.619 10.25 0.00 44.36 3.85
2666 3421 1.061131 CGAGGCTCAAGCAATACAACG 59.939 52.381 15.95 0.00 44.36 4.10
2667 3422 2.076863 ACGAGGCTCAAGCAATACAAC 58.923 47.619 15.95 0.00 44.36 3.32
2668 3423 2.076100 CACGAGGCTCAAGCAATACAA 58.924 47.619 15.95 0.00 44.36 2.41
2669 3424 1.675714 CCACGAGGCTCAAGCAATACA 60.676 52.381 15.95 0.00 44.36 2.29
2670 3425 1.009829 CCACGAGGCTCAAGCAATAC 58.990 55.000 15.95 0.00 44.36 1.89
2672 3427 1.377725 CCCACGAGGCTCAAGCAAT 60.378 57.895 15.95 0.00 44.36 3.56
2673 3428 2.032528 CCCACGAGGCTCAAGCAA 59.967 61.111 15.95 0.00 44.36 3.91
2682 3437 5.141182 ACTCCTATATATATGCCCACGAGG 58.859 45.833 5.44 2.71 39.47 4.63
2683 3438 6.771267 TGTACTCCTATATATATGCCCACGAG 59.229 42.308 5.44 4.01 0.00 4.18
2684 3439 6.665695 TGTACTCCTATATATATGCCCACGA 58.334 40.000 5.44 0.00 0.00 4.35
2685 3440 6.954487 TGTACTCCTATATATATGCCCACG 57.046 41.667 5.44 0.00 0.00 4.94
2686 3441 8.924303 TCATTGTACTCCTATATATATGCCCAC 58.076 37.037 5.44 0.00 0.00 4.61
2687 3442 9.674705 ATCATTGTACTCCTATATATATGCCCA 57.325 33.333 5.44 0.00 0.00 5.36
2697 3452 9.521841 CTCCAAGTAGATCATTGTACTCCTATA 57.478 37.037 0.00 0.00 31.09 1.31
2698 3453 8.007742 ACTCCAAGTAGATCATTGTACTCCTAT 58.992 37.037 0.00 0.00 31.09 2.57
2699 3454 7.355101 ACTCCAAGTAGATCATTGTACTCCTA 58.645 38.462 0.00 0.00 31.09 2.94
2700 3455 6.198639 ACTCCAAGTAGATCATTGTACTCCT 58.801 40.000 0.00 0.00 31.09 3.69
2701 3456 6.472686 ACTCCAAGTAGATCATTGTACTCC 57.527 41.667 0.00 0.00 31.09 3.85
2702 3457 7.997482 TGTACTCCAAGTAGATCATTGTACTC 58.003 38.462 0.00 0.00 31.09 2.59
2703 3458 7.956328 TGTACTCCAAGTAGATCATTGTACT 57.044 36.000 0.00 0.00 33.59 2.73
2704 3459 8.635877 CTTGTACTCCAAGTAGATCATTGTAC 57.364 38.462 0.00 0.00 44.64 2.90
2718 3473 2.703536 TCTGGCTTGTCTTGTACTCCAA 59.296 45.455 0.00 0.00 0.00 3.53
2719 3474 2.325484 TCTGGCTTGTCTTGTACTCCA 58.675 47.619 0.00 0.00 0.00 3.86
2720 3475 3.402628 TTCTGGCTTGTCTTGTACTCC 57.597 47.619 0.00 0.00 0.00 3.85
2721 3476 7.201652 GGATTTATTCTGGCTTGTCTTGTACTC 60.202 40.741 0.00 0.00 0.00 2.59
2722 3477 6.599638 GGATTTATTCTGGCTTGTCTTGTACT 59.400 38.462 0.00 0.00 0.00 2.73
2723 3478 6.599638 AGGATTTATTCTGGCTTGTCTTGTAC 59.400 38.462 0.00 0.00 0.00 2.90
2724 3479 6.721318 AGGATTTATTCTGGCTTGTCTTGTA 58.279 36.000 0.00 0.00 0.00 2.41
2725 3480 5.574188 AGGATTTATTCTGGCTTGTCTTGT 58.426 37.500 0.00 0.00 0.00 3.16
2726 3481 6.825721 ACTAGGATTTATTCTGGCTTGTCTTG 59.174 38.462 0.00 0.00 0.00 3.02
2727 3482 6.963322 ACTAGGATTTATTCTGGCTTGTCTT 58.037 36.000 0.00 0.00 0.00 3.01
2728 3483 6.385467 AGACTAGGATTTATTCTGGCTTGTCT 59.615 38.462 0.00 0.00 28.86 3.41
2729 3484 6.587273 AGACTAGGATTTATTCTGGCTTGTC 58.413 40.000 0.00 0.00 0.00 3.18
2730 3485 6.567602 AGACTAGGATTTATTCTGGCTTGT 57.432 37.500 0.00 0.00 0.00 3.16
2731 3486 8.592809 AGATAGACTAGGATTTATTCTGGCTTG 58.407 37.037 0.00 0.00 0.00 4.01
2732 3487 8.734593 AGATAGACTAGGATTTATTCTGGCTT 57.265 34.615 0.00 0.00 0.00 4.35
2733 3488 7.122055 CGAGATAGACTAGGATTTATTCTGGCT 59.878 40.741 0.00 0.00 0.00 4.75
2734 3489 7.094118 ACGAGATAGACTAGGATTTATTCTGGC 60.094 40.741 0.00 0.00 0.00 4.85
2735 3490 8.343168 ACGAGATAGACTAGGATTTATTCTGG 57.657 38.462 0.00 0.00 0.00 3.86
2736 3491 9.226606 AGACGAGATAGACTAGGATTTATTCTG 57.773 37.037 0.00 0.00 0.00 3.02
2737 3492 9.802039 AAGACGAGATAGACTAGGATTTATTCT 57.198 33.333 0.00 0.00 0.00 2.40
2740 3495 9.016438 GGAAAGACGAGATAGACTAGGATTTAT 57.984 37.037 0.00 0.00 0.00 1.40
2741 3496 8.219178 AGGAAAGACGAGATAGACTAGGATTTA 58.781 37.037 0.00 0.00 0.00 1.40
2742 3497 7.064229 AGGAAAGACGAGATAGACTAGGATTT 58.936 38.462 0.00 0.00 0.00 2.17
2743 3498 6.607019 AGGAAAGACGAGATAGACTAGGATT 58.393 40.000 0.00 0.00 0.00 3.01
2744 3499 6.195600 AGGAAAGACGAGATAGACTAGGAT 57.804 41.667 0.00 0.00 0.00 3.24
2745 3500 5.633655 AGGAAAGACGAGATAGACTAGGA 57.366 43.478 0.00 0.00 0.00 2.94
2746 3501 7.989416 ATTAGGAAAGACGAGATAGACTAGG 57.011 40.000 0.00 0.00 0.00 3.02
2749 3504 9.186837 TGTTTATTAGGAAAGACGAGATAGACT 57.813 33.333 0.00 0.00 0.00 3.24
2750 3505 9.968870 ATGTTTATTAGGAAAGACGAGATAGAC 57.031 33.333 0.00 0.00 0.00 2.59
2779 3534 9.005777 GGTACTGAATTACCTGTTTGTTGAATA 57.994 33.333 0.00 0.00 38.87 1.75
2780 3535 7.039993 GGGTACTGAATTACCTGTTTGTTGAAT 60.040 37.037 0.00 0.00 41.35 2.57
2781 3536 6.263617 GGGTACTGAATTACCTGTTTGTTGAA 59.736 38.462 0.00 0.00 41.35 2.69
2782 3537 5.766174 GGGTACTGAATTACCTGTTTGTTGA 59.234 40.000 0.00 0.00 41.35 3.18
2783 3538 5.533154 TGGGTACTGAATTACCTGTTTGTTG 59.467 40.000 0.00 0.00 41.35 3.33
2784 3539 5.697067 TGGGTACTGAATTACCTGTTTGTT 58.303 37.500 0.00 0.00 41.35 2.83
2785 3540 5.072600 TCTGGGTACTGAATTACCTGTTTGT 59.927 40.000 0.00 0.00 41.35 2.83
2786 3541 5.556915 TCTGGGTACTGAATTACCTGTTTG 58.443 41.667 0.00 0.00 41.35 2.93
2787 3542 5.836024 TCTGGGTACTGAATTACCTGTTT 57.164 39.130 0.00 0.00 41.35 2.83
2876 3631 8.347004 TGTTTTTGATAATATGCACCTGAGAA 57.653 30.769 0.00 0.00 0.00 2.87
2898 3653 1.800586 CACGTGCTTGCATAGTCTGTT 59.199 47.619 0.82 0.00 0.00 3.16
2962 3752 1.555075 TCCCTTCCCGAAACAGATCAG 59.445 52.381 0.00 0.00 0.00 2.90
3062 3852 1.485066 GAAGCCATCGTCCCCTTTCTA 59.515 52.381 0.00 0.00 0.00 2.10
3064 3854 0.035439 TGAAGCCATCGTCCCCTTTC 60.035 55.000 0.00 0.00 0.00 2.62
3066 3856 0.035056 CTTGAAGCCATCGTCCCCTT 60.035 55.000 0.00 0.00 0.00 3.95
3067 3857 0.909610 TCTTGAAGCCATCGTCCCCT 60.910 55.000 0.00 0.00 0.00 4.79
3124 3914 7.713764 AAAATTGCATAGAGTTGTGGTTTTC 57.286 32.000 0.00 0.00 0.00 2.29
3160 3950 6.574350 CCGATTAGTTCTAGAGTTGTGGATT 58.426 40.000 0.00 0.00 0.00 3.01
3161 3951 5.452077 GCCGATTAGTTCTAGAGTTGTGGAT 60.452 44.000 0.00 0.00 0.00 3.41
3223 4013 0.898320 CTAGTGGGGCCCTATCATCG 59.102 60.000 25.93 0.00 0.00 3.84
3243 4033 5.190677 AGCTAACCACTACTTTGTGTTTGT 58.809 37.500 0.00 0.00 36.30 2.83
3246 4036 9.162764 CATATTAGCTAACCACTACTTTGTGTT 57.837 33.333 8.70 0.00 36.30 3.32
3257 4049 8.100791 TGGGTAATCATCATATTAGCTAACCAC 58.899 37.037 8.70 0.00 38.98 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.