Multiple sequence alignment - TraesCS2B01G545200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G545200 chr2B 100.000 4216 0 0 1 4216 742111475 742107260 0.000000e+00 7786.0
1 TraesCS2B01G545200 chr2B 89.764 1905 157 23 843 2739 742173083 742171209 0.000000e+00 2403.0
2 TraesCS2B01G545200 chr2B 98.125 1333 19 5 2885 4216 340548694 340547367 0.000000e+00 2318.0
3 TraesCS2B01G545200 chr2B 97.912 1341 21 4 2878 4216 191738493 191739828 0.000000e+00 2314.0
4 TraesCS2B01G545200 chr2B 97.067 375 9 2 1 374 786816314 786816687 7.690000e-177 630.0
5 TraesCS2B01G545200 chr2B 97.043 372 10 1 1 372 229906876 229906506 3.580000e-175 625.0
6 TraesCS2B01G545200 chr2B 83.471 242 28 4 407 645 742110874 742110642 9.180000e-52 215.0
7 TraesCS2B01G545200 chr2B 83.471 242 28 4 602 834 742111069 742110831 9.180000e-52 215.0
8 TraesCS2B01G545200 chr2B 100.000 31 0 0 2817 2847 742171117 742171087 1.640000e-04 58.4
9 TraesCS2B01G545200 chr2D 92.190 2087 113 22 840 2893 608559741 608557672 0.000000e+00 2905.0
10 TraesCS2B01G545200 chr2D 89.291 1905 151 29 843 2739 608578733 608576874 0.000000e+00 2338.0
11 TraesCS2B01G545200 chr2D 81.308 107 16 4 2741 2847 608576840 608576738 2.700000e-12 84.2
12 TraesCS2B01G545200 chr2A 90.168 2085 159 14 843 2893 740079359 740077287 0.000000e+00 2673.0
13 TraesCS2B01G545200 chr2A 91.000 1900 157 8 843 2739 740143391 740141503 0.000000e+00 2549.0
14 TraesCS2B01G545200 chr2A 90.842 1900 160 8 843 2739 740119203 740117315 0.000000e+00 2532.0
15 TraesCS2B01G545200 chr2A 84.158 101 15 1 2745 2845 740117277 740117178 3.470000e-16 97.1
16 TraesCS2B01G545200 chr2A 84.158 101 15 1 2745 2845 740141465 740141366 3.470000e-16 97.1
17 TraesCS2B01G545200 chr6A 98.355 1337 17 4 2881 4216 538054319 538052987 0.000000e+00 2342.0
18 TraesCS2B01G545200 chr3A 98.350 1333 18 3 2885 4216 521605538 521604209 0.000000e+00 2337.0
19 TraesCS2B01G545200 chr3B 98.136 1341 19 5 2879 4216 672003930 672002593 0.000000e+00 2333.0
20 TraesCS2B01G545200 chr1B 98.273 1332 22 1 2886 4216 57741991 57743322 0.000000e+00 2331.0
21 TraesCS2B01G545200 chr1B 97.910 1340 26 2 2879 4216 414805971 414804632 0.000000e+00 2318.0
22 TraesCS2B01G545200 chr6B 98.126 1334 22 3 2884 4216 633351385 633350054 0.000000e+00 2322.0
23 TraesCS2B01G545200 chr5B 98.055 1337 22 3 2881 4216 641106235 641104902 0.000000e+00 2322.0
24 TraesCS2B01G545200 chr5B 97.043 372 10 1 1 372 441442744 441442374 3.580000e-175 625.0
25 TraesCS2B01G545200 chr7B 86.993 1899 203 25 846 2739 525598818 525596959 0.000000e+00 2098.0
26 TraesCS2B01G545200 chr7B 84.459 148 18 3 2741 2886 525596925 525596781 1.580000e-29 141.0
27 TraesCS2B01G545200 chr7A 90.458 1551 144 4 1190 2739 563246828 563245281 0.000000e+00 2041.0
28 TraesCS2B01G545200 chr7A 83.108 148 20 3 2741 2886 563245247 563245103 3.420000e-26 130.0
29 TraesCS2B01G545200 chr7D 90.264 1551 147 4 1190 2739 497320731 497319184 0.000000e+00 2025.0
30 TraesCS2B01G545200 chr4B 97.587 373 8 1 1 373 12060208 12059837 4.600000e-179 638.0
31 TraesCS2B01G545200 chr4B 97.319 373 9 1 1 373 646662609 646662238 2.140000e-177 632.0
32 TraesCS2B01G545200 chr4B 97.067 375 8 2 1 373 59195268 59194895 2.770000e-176 628.0
33 TraesCS2B01G545200 chrUn 97.067 375 9 2 1 374 313234660 313234287 7.690000e-177 630.0
34 TraesCS2B01G545200 chrUn 97.067 375 9 2 1 374 313238442 313238069 7.690000e-177 630.0
35 TraesCS2B01G545200 chr4A 97.043 372 10 1 1 372 661069062 661068692 3.580000e-175 625.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G545200 chr2B 742107260 742111475 4215 True 2738.666667 7786 88.980667 1 4216 3 chr2B.!!$R3 4215
1 TraesCS2B01G545200 chr2B 340547367 340548694 1327 True 2318.000000 2318 98.125000 2885 4216 1 chr2B.!!$R2 1331
2 TraesCS2B01G545200 chr2B 191738493 191739828 1335 False 2314.000000 2314 97.912000 2878 4216 1 chr2B.!!$F1 1338
3 TraesCS2B01G545200 chr2B 742171087 742173083 1996 True 1230.700000 2403 94.882000 843 2847 2 chr2B.!!$R4 2004
4 TraesCS2B01G545200 chr2D 608557672 608559741 2069 True 2905.000000 2905 92.190000 840 2893 1 chr2D.!!$R1 2053
5 TraesCS2B01G545200 chr2D 608576738 608578733 1995 True 1211.100000 2338 85.299500 843 2847 2 chr2D.!!$R2 2004
6 TraesCS2B01G545200 chr2A 740077287 740079359 2072 True 2673.000000 2673 90.168000 843 2893 1 chr2A.!!$R1 2050
7 TraesCS2B01G545200 chr2A 740141366 740143391 2025 True 1323.050000 2549 87.579000 843 2845 2 chr2A.!!$R3 2002
8 TraesCS2B01G545200 chr2A 740117178 740119203 2025 True 1314.550000 2532 87.500000 843 2845 2 chr2A.!!$R2 2002
9 TraesCS2B01G545200 chr6A 538052987 538054319 1332 True 2342.000000 2342 98.355000 2881 4216 1 chr6A.!!$R1 1335
10 TraesCS2B01G545200 chr3A 521604209 521605538 1329 True 2337.000000 2337 98.350000 2885 4216 1 chr3A.!!$R1 1331
11 TraesCS2B01G545200 chr3B 672002593 672003930 1337 True 2333.000000 2333 98.136000 2879 4216 1 chr3B.!!$R1 1337
12 TraesCS2B01G545200 chr1B 57741991 57743322 1331 False 2331.000000 2331 98.273000 2886 4216 1 chr1B.!!$F1 1330
13 TraesCS2B01G545200 chr1B 414804632 414805971 1339 True 2318.000000 2318 97.910000 2879 4216 1 chr1B.!!$R1 1337
14 TraesCS2B01G545200 chr6B 633350054 633351385 1331 True 2322.000000 2322 98.126000 2884 4216 1 chr6B.!!$R1 1332
15 TraesCS2B01G545200 chr5B 641104902 641106235 1333 True 2322.000000 2322 98.055000 2881 4216 1 chr5B.!!$R2 1335
16 TraesCS2B01G545200 chr7B 525596781 525598818 2037 True 1119.500000 2098 85.726000 846 2886 2 chr7B.!!$R1 2040
17 TraesCS2B01G545200 chr7A 563245103 563246828 1725 True 1085.500000 2041 86.783000 1190 2886 2 chr7A.!!$R1 1696
18 TraesCS2B01G545200 chr7D 497319184 497320731 1547 True 2025.000000 2025 90.264000 1190 2739 1 chr7D.!!$R1 1549
19 TraesCS2B01G545200 chrUn 313234287 313238442 4155 True 630.000000 630 97.067000 1 374 2 chrUn.!!$R1 373

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
921 930 0.032912 TCTATACCCACGAGCCACCA 60.033 55.000 0.0 0.0 0.00 4.17 F
1246 2315 0.467384 CATGTCCTTCTCCGCCATCT 59.533 55.000 0.0 0.0 0.00 2.90 F
1365 2434 1.002624 GTCCATGCCCGTTCTTCCA 60.003 57.895 0.0 0.0 0.00 3.53 F
1688 2757 1.004185 CATGAATCGCACTAGCACTGC 60.004 52.381 0.0 0.0 42.27 4.40 F
2190 3259 1.825090 TTAGCATGAGCCCACACAAG 58.175 50.000 0.0 0.0 43.56 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1984 3053 0.664761 GCGCAGACATATGTTGGCAT 59.335 50.000 23.80 3.93 34.87 4.40 R
2245 3314 1.066858 GGTCTCCAATGAGTCGCTCAA 60.067 52.381 12.43 0.00 44.04 3.02 R
2462 3531 1.203994 CCACCTCAAACCTATCGTCGT 59.796 52.381 0.00 0.00 0.00 4.34 R
2490 3559 3.385755 AGCACACAAGAGCAAAATTCCTT 59.614 39.130 0.00 0.00 33.43 3.36 R
4001 6898 3.474570 GCCTCGACCCATGCCTCT 61.475 66.667 0.00 0.00 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 166 3.125146 GGTGGGACGAAAATAAACCGTAC 59.875 47.826 0.00 0.00 36.60 3.67
206 208 3.834489 AGGAGTAGAGATAACGACGGA 57.166 47.619 0.00 0.00 0.00 4.69
284 286 0.981801 GGGAGGTGGGAGGAAGTACC 60.982 65.000 0.00 0.00 39.35 3.34
288 290 1.985895 AGGTGGGAGGAAGTACCAAAG 59.014 52.381 0.00 0.00 42.04 2.77
337 339 3.444742 GGGACGAAAATAAAACCCGGAAT 59.555 43.478 0.73 0.00 0.00 3.01
374 376 6.775629 ACTGAGACATTAGGAGTAGAGATTCC 59.224 42.308 0.00 0.00 0.00 3.01
375 377 6.673583 TGAGACATTAGGAGTAGAGATTCCA 58.326 40.000 0.00 0.00 33.85 3.53
376 378 6.775142 TGAGACATTAGGAGTAGAGATTCCAG 59.225 42.308 0.00 0.00 33.85 3.86
379 381 6.206042 ACATTAGGAGTAGAGATTCCAGGTT 58.794 40.000 0.00 0.00 33.85 3.50
380 382 6.674419 ACATTAGGAGTAGAGATTCCAGGTTT 59.326 38.462 0.00 0.00 33.85 3.27
382 384 7.569599 TTAGGAGTAGAGATTCCAGGTTTTT 57.430 36.000 0.00 0.00 33.85 1.94
383 385 6.056090 AGGAGTAGAGATTCCAGGTTTTTC 57.944 41.667 0.00 0.00 33.85 2.29
384 386 5.045505 AGGAGTAGAGATTCCAGGTTTTTCC 60.046 44.000 0.00 0.00 33.85 3.13
385 387 4.833390 AGTAGAGATTCCAGGTTTTTCCG 58.167 43.478 0.00 0.00 41.99 4.30
387 389 4.100279 AGAGATTCCAGGTTTTTCCGTT 57.900 40.909 0.00 0.00 41.99 4.44
388 390 3.821033 AGAGATTCCAGGTTTTTCCGTTG 59.179 43.478 0.00 0.00 41.99 4.10
390 392 4.721132 AGATTCCAGGTTTTTCCGTTGTA 58.279 39.130 0.00 0.00 41.99 2.41
392 394 2.853705 TCCAGGTTTTTCCGTTGTAGG 58.146 47.619 0.00 0.00 41.99 3.18
393 395 2.438763 TCCAGGTTTTTCCGTTGTAGGA 59.561 45.455 0.00 0.00 41.99 2.94
394 396 2.551032 CCAGGTTTTTCCGTTGTAGGAC 59.449 50.000 0.00 0.00 40.56 3.85
395 397 3.207778 CAGGTTTTTCCGTTGTAGGACA 58.792 45.455 0.00 0.00 40.56 4.02
399 401 6.016943 CAGGTTTTTCCGTTGTAGGACATTTA 60.017 38.462 0.00 0.00 40.56 1.40
400 402 6.206048 AGGTTTTTCCGTTGTAGGACATTTAG 59.794 38.462 0.00 0.00 40.56 1.85
401 403 6.205270 GGTTTTTCCGTTGTAGGACATTTAGA 59.795 38.462 0.00 0.00 40.56 2.10
403 405 7.605410 TTTTCCGTTGTAGGACATTTAGATC 57.395 36.000 0.00 0.00 40.56 2.75
404 406 4.928601 TCCGTTGTAGGACATTTAGATCG 58.071 43.478 0.00 0.00 34.92 3.69
405 407 3.489785 CCGTTGTAGGACATTTAGATCGC 59.510 47.826 0.00 0.00 0.00 4.58
406 408 4.109766 CGTTGTAGGACATTTAGATCGCA 58.890 43.478 0.00 0.00 0.00 5.10
408 410 5.107837 CGTTGTAGGACATTTAGATCGCATC 60.108 44.000 0.00 0.00 0.00 3.91
409 411 4.883083 TGTAGGACATTTAGATCGCATCC 58.117 43.478 0.00 0.00 0.00 3.51
410 412 3.032017 AGGACATTTAGATCGCATCCG 57.968 47.619 0.00 0.00 0.00 4.18
422 424 3.918258 TCGCATCCGATTTTAGAAACG 57.082 42.857 0.00 0.00 38.82 3.60
423 425 3.513662 TCGCATCCGATTTTAGAAACGA 58.486 40.909 0.00 0.00 38.82 3.85
424 426 3.550275 TCGCATCCGATTTTAGAAACGAG 59.450 43.478 0.00 0.00 38.82 4.18
426 428 4.548346 CGCATCCGATTTTAGAAACGAGAC 60.548 45.833 0.00 0.00 33.44 3.36
427 429 4.548346 GCATCCGATTTTAGAAACGAGACG 60.548 45.833 0.00 0.00 33.44 4.18
428 430 4.424061 TCCGATTTTAGAAACGAGACGA 57.576 40.909 0.00 0.00 33.44 4.20
431 433 6.554419 TCCGATTTTAGAAACGAGACGATTA 58.446 36.000 0.00 0.00 33.44 1.75
432 434 7.198390 TCCGATTTTAGAAACGAGACGATTAT 58.802 34.615 0.00 0.00 33.44 1.28
433 435 7.703621 TCCGATTTTAGAAACGAGACGATTATT 59.296 33.333 0.00 0.00 33.44 1.40
434 436 8.325997 CCGATTTTAGAAACGAGACGATTATTT 58.674 33.333 0.00 0.00 33.44 1.40
435 437 9.342686 CGATTTTAGAAACGAGACGATTATTTC 57.657 33.333 0.00 0.00 33.44 2.17
436 438 9.634300 GATTTTAGAAACGAGACGATTATTTCC 57.366 33.333 0.00 0.00 31.05 3.13
437 439 6.801367 TTAGAAACGAGACGATTATTTCCG 57.199 37.500 0.00 0.00 31.05 4.30
438 440 4.110482 AGAAACGAGACGATTATTTCCGG 58.890 43.478 0.00 0.00 31.05 5.14
439 441 3.788333 AACGAGACGATTATTTCCGGA 57.212 42.857 0.00 0.00 0.00 5.14
440 442 4.317671 AACGAGACGATTATTTCCGGAT 57.682 40.909 4.15 0.00 0.00 4.18
441 443 4.317671 ACGAGACGATTATTTCCGGATT 57.682 40.909 4.15 0.00 0.00 3.01
442 444 4.296690 ACGAGACGATTATTTCCGGATTC 58.703 43.478 4.15 0.00 0.00 2.52
443 445 4.202080 ACGAGACGATTATTTCCGGATTCA 60.202 41.667 4.15 0.00 0.00 2.57
444 446 4.923871 CGAGACGATTATTTCCGGATTCAT 59.076 41.667 4.15 0.10 0.00 2.57
445 447 5.405571 CGAGACGATTATTTCCGGATTCATT 59.594 40.000 4.15 0.00 0.00 2.57
446 448 6.400091 CGAGACGATTATTTCCGGATTCATTC 60.400 42.308 4.15 0.00 0.00 2.67
447 449 5.701290 AGACGATTATTTCCGGATTCATTCC 59.299 40.000 4.15 0.00 41.59 3.01
448 450 5.621193 ACGATTATTTCCGGATTCATTCCT 58.379 37.500 4.15 0.00 42.99 3.36
449 451 6.062095 ACGATTATTTCCGGATTCATTCCTT 58.938 36.000 4.15 0.00 42.99 3.36
450 452 6.017109 ACGATTATTTCCGGATTCATTCCTTG 60.017 38.462 4.15 0.00 42.99 3.61
451 453 5.514274 TTATTTCCGGATTCATTCCTTGC 57.486 39.130 4.15 0.00 42.99 4.01
452 454 2.505650 TTCCGGATTCATTCCTTGCA 57.494 45.000 4.15 0.00 42.99 4.08
453 455 2.734755 TCCGGATTCATTCCTTGCAT 57.265 45.000 0.00 0.00 42.99 3.96
454 456 2.300433 TCCGGATTCATTCCTTGCATG 58.700 47.619 0.00 0.00 42.99 4.06
455 457 1.338973 CCGGATTCATTCCTTGCATGG 59.661 52.381 12.41 12.41 42.99 3.66
456 458 1.269413 CGGATTCATTCCTTGCATGGC 60.269 52.381 13.75 0.00 42.99 4.40
457 459 1.758280 GGATTCATTCCTTGCATGGCA 59.242 47.619 13.75 3.34 41.78 4.92
458 460 2.482490 GGATTCATTCCTTGCATGGCAC 60.482 50.000 13.75 0.72 41.78 5.01
459 461 1.927487 TTCATTCCTTGCATGGCACT 58.073 45.000 13.75 0.00 38.71 4.40
460 462 1.179152 TCATTCCTTGCATGGCACTG 58.821 50.000 13.75 10.30 38.71 3.66
461 463 1.179152 CATTCCTTGCATGGCACTGA 58.821 50.000 13.75 0.00 38.71 3.41
462 464 1.546923 CATTCCTTGCATGGCACTGAA 59.453 47.619 13.75 3.17 38.71 3.02
463 465 1.250328 TTCCTTGCATGGCACTGAAG 58.750 50.000 13.75 0.00 38.71 3.02
464 466 0.609957 TCCTTGCATGGCACTGAAGG 60.610 55.000 13.75 12.07 38.71 3.46
465 467 0.609957 CCTTGCATGGCACTGAAGGA 60.610 55.000 12.71 0.00 38.71 3.36
466 468 0.809385 CTTGCATGGCACTGAAGGAG 59.191 55.000 0.00 0.00 38.71 3.69
467 469 0.401356 TTGCATGGCACTGAAGGAGA 59.599 50.000 0.00 0.00 38.71 3.71
468 470 0.035725 TGCATGGCACTGAAGGAGAG 60.036 55.000 0.00 0.00 31.71 3.20
469 471 0.035630 GCATGGCACTGAAGGAGAGT 60.036 55.000 0.00 0.00 0.00 3.24
470 472 2.011046 GCATGGCACTGAAGGAGAGTC 61.011 57.143 0.00 0.00 0.00 3.36
471 473 1.277273 CATGGCACTGAAGGAGAGTCA 59.723 52.381 0.00 0.00 30.93 3.41
472 474 1.423584 TGGCACTGAAGGAGAGTCAA 58.576 50.000 0.00 0.00 0.00 3.18
473 475 1.980765 TGGCACTGAAGGAGAGTCAAT 59.019 47.619 0.00 0.00 0.00 2.57
474 476 2.027745 TGGCACTGAAGGAGAGTCAATC 60.028 50.000 0.00 0.00 0.00 2.67
475 477 2.027745 GGCACTGAAGGAGAGTCAATCA 60.028 50.000 0.00 0.00 0.00 2.57
476 478 3.557898 GGCACTGAAGGAGAGTCAATCAA 60.558 47.826 0.00 0.00 0.00 2.57
477 479 4.260170 GCACTGAAGGAGAGTCAATCAAT 58.740 43.478 0.00 0.00 0.00 2.57
478 480 4.332268 GCACTGAAGGAGAGTCAATCAATC 59.668 45.833 0.00 0.00 0.00 2.67
479 481 5.732633 CACTGAAGGAGAGTCAATCAATCT 58.267 41.667 0.00 0.00 0.00 2.40
480 482 6.629068 GCACTGAAGGAGAGTCAATCAATCTA 60.629 42.308 0.00 0.00 0.00 1.98
481 483 6.979817 CACTGAAGGAGAGTCAATCAATCTAG 59.020 42.308 0.00 0.00 0.00 2.43
482 484 6.894654 ACTGAAGGAGAGTCAATCAATCTAGA 59.105 38.462 0.00 0.00 0.00 2.43
483 485 7.106439 TGAAGGAGAGTCAATCAATCTAGAC 57.894 40.000 0.00 0.00 0.00 2.59
484 486 6.097554 TGAAGGAGAGTCAATCAATCTAGACC 59.902 42.308 0.00 0.00 0.00 3.85
485 487 4.898861 AGGAGAGTCAATCAATCTAGACCC 59.101 45.833 0.00 0.00 0.00 4.46
486 488 4.651503 GGAGAGTCAATCAATCTAGACCCA 59.348 45.833 0.00 0.00 0.00 4.51
487 489 5.306678 GGAGAGTCAATCAATCTAGACCCAT 59.693 44.000 0.00 0.00 0.00 4.00
488 490 6.183361 GGAGAGTCAATCAATCTAGACCCATT 60.183 42.308 0.00 0.00 0.00 3.16
489 491 7.205515 AGAGTCAATCAATCTAGACCCATTT 57.794 36.000 0.00 0.00 0.00 2.32
490 492 7.052873 AGAGTCAATCAATCTAGACCCATTTG 58.947 38.462 0.00 0.00 0.00 2.32
491 493 5.591877 AGTCAATCAATCTAGACCCATTTGC 59.408 40.000 0.00 0.00 0.00 3.68
492 494 5.357878 GTCAATCAATCTAGACCCATTTGCA 59.642 40.000 0.00 0.00 0.00 4.08
493 495 6.040166 GTCAATCAATCTAGACCCATTTGCAT 59.960 38.462 0.00 0.00 0.00 3.96
494 496 6.263842 TCAATCAATCTAGACCCATTTGCATC 59.736 38.462 0.00 0.00 0.00 3.91
495 497 4.464008 TCAATCTAGACCCATTTGCATCC 58.536 43.478 0.00 0.00 0.00 3.51
496 498 3.515602 ATCTAGACCCATTTGCATCCC 57.484 47.619 0.00 0.00 0.00 3.85
497 499 1.140852 TCTAGACCCATTTGCATCCCG 59.859 52.381 0.00 0.00 0.00 5.14
498 500 0.182537 TAGACCCATTTGCATCCCGG 59.817 55.000 0.00 0.00 0.00 5.73
499 501 2.043046 ACCCATTTGCATCCCGGG 60.043 61.111 16.85 16.85 43.02 5.73
500 502 2.043046 CCCATTTGCATCCCGGGT 60.043 61.111 22.86 4.84 31.80 5.28
501 503 1.685421 CCCATTTGCATCCCGGGTT 60.685 57.895 22.86 9.98 31.80 4.11
502 504 1.264045 CCCATTTGCATCCCGGGTTT 61.264 55.000 22.86 6.63 31.80 3.27
503 505 0.612744 CCATTTGCATCCCGGGTTTT 59.387 50.000 22.86 3.64 0.00 2.43
504 506 1.675415 CCATTTGCATCCCGGGTTTTG 60.675 52.381 22.86 17.54 0.00 2.44
505 507 1.274728 CATTTGCATCCCGGGTTTTGA 59.725 47.619 22.86 0.00 0.00 2.69
506 508 1.414158 TTTGCATCCCGGGTTTTGAA 58.586 45.000 22.86 8.98 0.00 2.69
507 509 1.414158 TTGCATCCCGGGTTTTGAAA 58.586 45.000 22.86 14.74 0.00 2.69
508 510 1.414158 TGCATCCCGGGTTTTGAAAA 58.586 45.000 22.86 0.00 0.00 2.29
509 511 1.342819 TGCATCCCGGGTTTTGAAAAG 59.657 47.619 22.86 0.00 0.00 2.27
510 512 1.616374 GCATCCCGGGTTTTGAAAAGA 59.384 47.619 22.86 0.00 0.00 2.52
511 513 2.352715 GCATCCCGGGTTTTGAAAAGAG 60.353 50.000 22.86 0.00 0.00 2.85
512 514 1.989706 TCCCGGGTTTTGAAAAGAGG 58.010 50.000 22.86 0.00 0.00 3.69
513 515 0.966179 CCCGGGTTTTGAAAAGAGGG 59.034 55.000 14.18 9.58 0.00 4.30
514 516 0.966179 CCGGGTTTTGAAAAGAGGGG 59.034 55.000 0.00 0.00 0.00 4.79
515 517 1.699730 CGGGTTTTGAAAAGAGGGGT 58.300 50.000 0.00 0.00 0.00 4.95
516 518 2.036387 CGGGTTTTGAAAAGAGGGGTT 58.964 47.619 0.00 0.00 0.00 4.11
517 519 2.223947 CGGGTTTTGAAAAGAGGGGTTG 60.224 50.000 0.00 0.00 0.00 3.77
518 520 2.484770 GGGTTTTGAAAAGAGGGGTTGC 60.485 50.000 0.00 0.00 0.00 4.17
519 521 2.469826 GTTTTGAAAAGAGGGGTTGCG 58.530 47.619 0.00 0.00 0.00 4.85
520 522 1.770294 TTTGAAAAGAGGGGTTGCGT 58.230 45.000 0.00 0.00 0.00 5.24
521 523 1.314730 TTGAAAAGAGGGGTTGCGTC 58.685 50.000 0.00 0.00 0.00 5.19
522 524 0.536460 TGAAAAGAGGGGTTGCGTCC 60.536 55.000 0.00 0.00 0.00 4.79
523 525 0.536460 GAAAAGAGGGGTTGCGTCCA 60.536 55.000 0.00 0.00 0.00 4.02
524 526 0.537371 AAAAGAGGGGTTGCGTCCAG 60.537 55.000 0.00 0.00 0.00 3.86
525 527 1.415672 AAAGAGGGGTTGCGTCCAGA 61.416 55.000 0.00 0.00 0.00 3.86
526 528 1.201429 AAGAGGGGTTGCGTCCAGAT 61.201 55.000 0.00 0.00 0.00 2.90
527 529 1.201429 AGAGGGGTTGCGTCCAGATT 61.201 55.000 0.00 0.00 0.00 2.40
528 530 0.744771 GAGGGGTTGCGTCCAGATTC 60.745 60.000 0.00 0.00 0.00 2.52
529 531 1.749258 GGGGTTGCGTCCAGATTCC 60.749 63.158 0.00 0.00 0.00 3.01
530 532 1.002624 GGGTTGCGTCCAGATTCCA 60.003 57.895 0.00 0.00 0.00 3.53
531 533 0.394352 GGGTTGCGTCCAGATTCCAT 60.394 55.000 0.00 0.00 0.00 3.41
532 534 1.017387 GGTTGCGTCCAGATTCCATC 58.983 55.000 0.00 0.00 0.00 3.51
533 535 1.017387 GTTGCGTCCAGATTCCATCC 58.983 55.000 0.00 0.00 0.00 3.51
534 536 0.107214 TTGCGTCCAGATTCCATCCC 60.107 55.000 0.00 0.00 0.00 3.85
535 537 0.982852 TGCGTCCAGATTCCATCCCT 60.983 55.000 0.00 0.00 0.00 4.20
536 538 0.250081 GCGTCCAGATTCCATCCCTC 60.250 60.000 0.00 0.00 0.00 4.30
537 539 1.418334 CGTCCAGATTCCATCCCTCT 58.582 55.000 0.00 0.00 0.00 3.69
538 540 1.069823 CGTCCAGATTCCATCCCTCTG 59.930 57.143 0.00 0.00 36.89 3.35
551 553 3.796764 CCTCTGGGAGAGATTTGCC 57.203 57.895 2.01 0.00 45.07 4.52
552 554 0.179062 CCTCTGGGAGAGATTTGCCG 60.179 60.000 2.01 0.00 45.07 5.69
553 555 0.813210 CTCTGGGAGAGATTTGCCGC 60.813 60.000 0.00 0.00 45.07 6.53
554 556 1.078214 CTGGGAGAGATTTGCCGCA 60.078 57.895 0.00 0.00 0.00 5.69
555 557 0.465097 CTGGGAGAGATTTGCCGCAT 60.465 55.000 0.00 0.00 0.00 4.73
556 558 0.034186 TGGGAGAGATTTGCCGCATT 60.034 50.000 0.00 0.00 0.00 3.56
557 559 1.106285 GGGAGAGATTTGCCGCATTT 58.894 50.000 0.00 0.00 0.00 2.32
558 560 1.202336 GGGAGAGATTTGCCGCATTTG 60.202 52.381 0.00 0.00 0.00 2.32
559 561 1.553308 GAGAGATTTGCCGCATTTGC 58.447 50.000 0.00 0.00 37.78 3.68
560 562 1.133790 GAGAGATTTGCCGCATTTGCT 59.866 47.619 0.00 0.00 39.32 3.91
561 563 1.133790 AGAGATTTGCCGCATTTGCTC 59.866 47.619 0.00 0.00 39.32 4.26
562 564 0.889994 AGATTTGCCGCATTTGCTCA 59.110 45.000 0.00 0.00 39.32 4.26
563 565 1.479323 AGATTTGCCGCATTTGCTCAT 59.521 42.857 0.00 0.00 39.32 2.90
564 566 2.689471 AGATTTGCCGCATTTGCTCATA 59.311 40.909 0.00 0.00 39.32 2.15
565 567 3.130869 AGATTTGCCGCATTTGCTCATAA 59.869 39.130 0.00 0.00 39.32 1.90
566 568 2.276472 TTGCCGCATTTGCTCATAAC 57.724 45.000 0.00 0.00 39.32 1.89
567 569 1.172175 TGCCGCATTTGCTCATAACA 58.828 45.000 0.51 0.00 39.32 2.41
568 570 1.135431 TGCCGCATTTGCTCATAACAC 60.135 47.619 0.51 0.00 39.32 3.32
569 571 1.133025 GCCGCATTTGCTCATAACACT 59.867 47.619 0.51 0.00 39.32 3.55
570 572 2.415893 GCCGCATTTGCTCATAACACTT 60.416 45.455 0.51 0.00 39.32 3.16
571 573 3.173599 CCGCATTTGCTCATAACACTTG 58.826 45.455 0.51 0.00 39.32 3.16
572 574 3.366273 CCGCATTTGCTCATAACACTTGT 60.366 43.478 0.51 0.00 39.32 3.16
573 575 4.142708 CCGCATTTGCTCATAACACTTGTA 60.143 41.667 0.51 0.00 39.32 2.41
574 576 5.389778 CGCATTTGCTCATAACACTTGTAA 58.610 37.500 0.51 0.00 39.32 2.41
575 577 5.855925 CGCATTTGCTCATAACACTTGTAAA 59.144 36.000 0.51 0.00 39.32 2.01
576 578 6.032775 CGCATTTGCTCATAACACTTGTAAAG 59.967 38.462 0.51 0.00 44.54 1.85
577 579 7.083858 GCATTTGCTCATAACACTTGTAAAGA 58.916 34.615 0.00 0.00 41.93 2.52
578 580 7.272084 GCATTTGCTCATAACACTTGTAAAGAG 59.728 37.037 0.00 0.00 41.93 2.85
600 602 9.678260 AAGAGCAAGTCTATTTCATAAGAATGT 57.322 29.630 0.00 0.00 32.65 2.71
619 621 8.894768 AGAATGTATCCGATTTTAGGAAAGAG 57.105 34.615 0.00 0.00 41.69 2.85
620 622 8.705594 AGAATGTATCCGATTTTAGGAAAGAGA 58.294 33.333 0.00 0.00 41.69 3.10
621 623 8.894768 AATGTATCCGATTTTAGGAAAGAGAG 57.105 34.615 0.00 0.00 41.69 3.20
622 624 6.817184 TGTATCCGATTTTAGGAAAGAGAGG 58.183 40.000 0.00 0.00 41.69 3.69
623 625 6.610020 TGTATCCGATTTTAGGAAAGAGAGGA 59.390 38.462 0.00 0.00 41.69 3.71
624 626 6.755542 ATCCGATTTTAGGAAAGAGAGGAT 57.244 37.500 0.00 0.00 41.69 3.24
625 627 6.561519 TCCGATTTTAGGAAAGAGAGGATT 57.438 37.500 0.00 0.00 34.33 3.01
626 628 6.349300 TCCGATTTTAGGAAAGAGAGGATTG 58.651 40.000 0.00 0.00 34.33 2.67
627 629 5.008118 CCGATTTTAGGAAAGAGAGGATTGC 59.992 44.000 0.00 0.00 0.00 3.56
628 630 5.819901 CGATTTTAGGAAAGAGAGGATTGCT 59.180 40.000 0.00 0.00 0.00 3.91
629 631 6.317391 CGATTTTAGGAAAGAGAGGATTGCTT 59.683 38.462 0.00 0.00 0.00 3.91
630 632 7.148171 CGATTTTAGGAAAGAGAGGATTGCTTT 60.148 37.037 0.00 0.00 34.79 3.51
631 633 7.454260 TTTTAGGAAAGAGAGGATTGCTTTC 57.546 36.000 0.00 0.00 44.07 2.62
632 634 3.604582 AGGAAAGAGAGGATTGCTTTCG 58.395 45.455 0.00 0.00 45.13 3.46
633 635 2.680339 GGAAAGAGAGGATTGCTTTCGG 59.320 50.000 0.00 0.00 45.13 4.30
634 636 3.600388 GAAAGAGAGGATTGCTTTCGGA 58.400 45.455 0.00 0.00 38.43 4.55
635 637 3.922171 AAGAGAGGATTGCTTTCGGAT 57.078 42.857 0.00 0.00 0.00 4.18
636 638 3.922171 AGAGAGGATTGCTTTCGGATT 57.078 42.857 0.00 0.00 0.00 3.01
637 639 3.802866 AGAGAGGATTGCTTTCGGATTC 58.197 45.455 0.00 0.00 0.00 2.52
638 640 3.198635 AGAGAGGATTGCTTTCGGATTCA 59.801 43.478 0.00 0.00 0.00 2.57
639 641 4.133078 GAGAGGATTGCTTTCGGATTCAT 58.867 43.478 0.00 0.00 0.00 2.57
640 642 4.530875 AGAGGATTGCTTTCGGATTCATT 58.469 39.130 0.00 0.00 0.00 2.57
641 643 4.578105 AGAGGATTGCTTTCGGATTCATTC 59.422 41.667 0.00 0.00 0.00 2.67
642 644 3.633986 AGGATTGCTTTCGGATTCATTCC 59.366 43.478 0.00 0.00 41.59 3.01
643 645 3.633986 GGATTGCTTTCGGATTCATTCCT 59.366 43.478 0.00 0.00 42.99 3.36
644 646 4.098501 GGATTGCTTTCGGATTCATTCCTT 59.901 41.667 0.00 0.00 42.99 3.36
645 647 4.439305 TTGCTTTCGGATTCATTCCTTG 57.561 40.909 0.00 0.00 42.99 3.61
646 648 2.164219 TGCTTTCGGATTCATTCCTTGC 59.836 45.455 0.00 0.00 42.99 4.01
647 649 2.164219 GCTTTCGGATTCATTCCTTGCA 59.836 45.455 0.00 0.00 42.99 4.08
648 650 3.181483 GCTTTCGGATTCATTCCTTGCAT 60.181 43.478 0.00 0.00 42.99 3.96
649 651 4.357142 CTTTCGGATTCATTCCTTGCATG 58.643 43.478 0.00 0.00 42.99 4.06
650 652 2.300433 TCGGATTCATTCCTTGCATGG 58.700 47.619 12.41 12.41 42.99 3.66
651 653 1.269413 CGGATTCATTCCTTGCATGGC 60.269 52.381 13.75 0.00 42.99 4.40
652 654 1.758280 GGATTCATTCCTTGCATGGCA 59.242 47.619 13.75 3.34 41.78 4.92
653 655 2.482490 GGATTCATTCCTTGCATGGCAC 60.482 50.000 13.75 0.72 41.78 5.01
654 656 1.927487 TTCATTCCTTGCATGGCACT 58.073 45.000 13.75 0.00 38.71 4.40
655 657 1.179152 TCATTCCTTGCATGGCACTG 58.821 50.000 13.75 10.30 38.71 3.66
656 658 1.179152 CATTCCTTGCATGGCACTGA 58.821 50.000 13.75 0.00 38.71 3.41
657 659 1.546923 CATTCCTTGCATGGCACTGAA 59.453 47.619 13.75 3.17 38.71 3.02
658 660 1.250328 TTCCTTGCATGGCACTGAAG 58.750 50.000 13.75 0.00 38.71 3.02
659 661 0.401356 TCCTTGCATGGCACTGAAGA 59.599 50.000 13.75 0.00 38.71 2.87
660 662 1.202915 TCCTTGCATGGCACTGAAGAA 60.203 47.619 13.75 0.00 38.71 2.52
661 663 1.201647 CCTTGCATGGCACTGAAGAAG 59.798 52.381 5.58 0.00 38.71 2.85
662 664 2.156917 CTTGCATGGCACTGAAGAAGA 58.843 47.619 0.00 0.00 38.71 2.87
663 665 1.817357 TGCATGGCACTGAAGAAGAG 58.183 50.000 0.00 0.00 31.71 2.85
664 666 1.072806 TGCATGGCACTGAAGAAGAGT 59.927 47.619 0.00 0.00 31.71 3.24
665 667 2.302733 TGCATGGCACTGAAGAAGAGTA 59.697 45.455 0.00 0.00 31.71 2.59
666 668 3.244526 TGCATGGCACTGAAGAAGAGTAA 60.245 43.478 0.00 0.00 31.71 2.24
667 669 3.753272 GCATGGCACTGAAGAAGAGTAAA 59.247 43.478 0.00 0.00 0.00 2.01
668 670 4.216257 GCATGGCACTGAAGAAGAGTAAAA 59.784 41.667 0.00 0.00 0.00 1.52
669 671 5.278463 GCATGGCACTGAAGAAGAGTAAAAA 60.278 40.000 0.00 0.00 0.00 1.94
670 672 6.571150 GCATGGCACTGAAGAAGAGTAAAAAT 60.571 38.462 0.00 0.00 0.00 1.82
671 673 6.560253 TGGCACTGAAGAAGAGTAAAAATC 57.440 37.500 0.00 0.00 0.00 2.17
672 674 6.061441 TGGCACTGAAGAAGAGTAAAAATCA 58.939 36.000 0.00 0.00 0.00 2.57
673 675 6.545666 TGGCACTGAAGAAGAGTAAAAATCAA 59.454 34.615 0.00 0.00 0.00 2.57
674 676 7.231317 TGGCACTGAAGAAGAGTAAAAATCAAT 59.769 33.333 0.00 0.00 0.00 2.57
675 677 7.540055 GGCACTGAAGAAGAGTAAAAATCAATG 59.460 37.037 0.00 0.00 0.00 2.82
676 678 8.078596 GCACTGAAGAAGAGTAAAAATCAATGT 58.921 33.333 0.00 0.00 0.00 2.71
683 685 9.753674 AGAAGAGTAAAAATCAATGTAATCCCA 57.246 29.630 0.00 0.00 0.00 4.37
688 690 9.382275 AGTAAAAATCAATGTAATCCCATTTGC 57.618 29.630 0.00 0.00 32.81 3.68
689 691 6.907206 AAAATCAATGTAATCCCATTTGCG 57.093 33.333 0.00 0.00 32.81 4.85
690 692 5.596836 AATCAATGTAATCCCATTTGCGT 57.403 34.783 0.00 0.00 32.81 5.24
691 693 5.596836 ATCAATGTAATCCCATTTGCGTT 57.403 34.783 0.00 0.00 32.81 4.84
692 694 4.992688 TCAATGTAATCCCATTTGCGTTC 58.007 39.130 0.00 0.00 32.81 3.95
693 695 4.111916 CAATGTAATCCCATTTGCGTTCC 58.888 43.478 0.00 0.00 32.81 3.62
694 696 1.740585 TGTAATCCCATTTGCGTTCCG 59.259 47.619 0.00 0.00 0.00 4.30
695 697 2.011222 GTAATCCCATTTGCGTTCCGA 58.989 47.619 0.00 0.00 0.00 4.55
696 698 1.762708 AATCCCATTTGCGTTCCGAT 58.237 45.000 0.00 0.00 0.00 4.18
697 699 1.762708 ATCCCATTTGCGTTCCGATT 58.237 45.000 0.00 0.00 0.00 3.34
698 700 1.540267 TCCCATTTGCGTTCCGATTT 58.460 45.000 0.00 0.00 0.00 2.17
699 701 1.889829 TCCCATTTGCGTTCCGATTTT 59.110 42.857 0.00 0.00 0.00 1.82
700 702 2.297597 TCCCATTTGCGTTCCGATTTTT 59.702 40.909 0.00 0.00 0.00 1.94
701 703 2.411409 CCCATTTGCGTTCCGATTTTTG 59.589 45.455 0.00 0.00 0.00 2.44
702 704 3.312828 CCATTTGCGTTCCGATTTTTGA 58.687 40.909 0.00 0.00 0.00 2.69
703 705 3.925913 CCATTTGCGTTCCGATTTTTGAT 59.074 39.130 0.00 0.00 0.00 2.57
704 706 4.201608 CCATTTGCGTTCCGATTTTTGATG 60.202 41.667 0.00 0.00 0.00 3.07
705 707 2.627863 TGCGTTCCGATTTTTGATGG 57.372 45.000 0.00 0.00 0.00 3.51
706 708 2.155279 TGCGTTCCGATTTTTGATGGA 58.845 42.857 0.00 0.00 0.00 3.41
707 709 2.161410 TGCGTTCCGATTTTTGATGGAG 59.839 45.455 0.00 0.00 0.00 3.86
708 710 2.477863 GCGTTCCGATTTTTGATGGAGG 60.478 50.000 0.00 0.00 0.00 4.30
709 711 2.097466 CGTTCCGATTTTTGATGGAGGG 59.903 50.000 0.00 0.00 0.00 4.30
710 712 2.427095 GTTCCGATTTTTGATGGAGGGG 59.573 50.000 0.00 0.00 0.00 4.79
711 713 1.919654 TCCGATTTTTGATGGAGGGGA 59.080 47.619 0.00 0.00 0.00 4.81
712 714 2.513738 TCCGATTTTTGATGGAGGGGAT 59.486 45.455 0.00 0.00 0.00 3.85
713 715 3.052944 TCCGATTTTTGATGGAGGGGATT 60.053 43.478 0.00 0.00 0.00 3.01
714 716 3.068590 CCGATTTTTGATGGAGGGGATTG 59.931 47.826 0.00 0.00 0.00 2.67
715 717 3.491447 CGATTTTTGATGGAGGGGATTGC 60.491 47.826 0.00 0.00 0.00 3.56
716 718 1.473258 TTTTGATGGAGGGGATTGCG 58.527 50.000 0.00 0.00 0.00 4.85
717 719 0.331278 TTTGATGGAGGGGATTGCGT 59.669 50.000 0.00 0.00 0.00 5.24
718 720 0.107214 TTGATGGAGGGGATTGCGTC 60.107 55.000 0.00 0.00 0.00 5.19
726 728 3.732470 GGATTGCGTCCGGATTCC 58.268 61.111 7.81 6.01 37.23 3.01
727 729 1.153249 GGATTGCGTCCGGATTCCA 60.153 57.895 7.81 1.98 37.23 3.53
728 730 0.535102 GGATTGCGTCCGGATTCCAT 60.535 55.000 7.81 0.00 37.23 3.41
729 731 0.868406 GATTGCGTCCGGATTCCATC 59.132 55.000 7.81 5.85 0.00 3.51
730 732 0.535102 ATTGCGTCCGGATTCCATCC 60.535 55.000 7.81 0.00 46.22 3.51
740 742 1.966354 GGATTCCATCCCTGATTTGCC 59.034 52.381 0.00 0.00 43.88 4.52
741 743 1.610522 GATTCCATCCCTGATTTGCCG 59.389 52.381 0.00 0.00 0.00 5.69
742 744 1.037030 TTCCATCCCTGATTTGCCGC 61.037 55.000 0.00 0.00 0.00 6.53
743 745 1.753848 CCATCCCTGATTTGCCGCA 60.754 57.895 0.00 0.00 0.00 5.69
744 746 1.111116 CCATCCCTGATTTGCCGCAT 61.111 55.000 0.00 0.00 0.00 4.73
745 747 0.748450 CATCCCTGATTTGCCGCATT 59.252 50.000 0.00 0.00 0.00 3.56
746 748 1.137479 CATCCCTGATTTGCCGCATTT 59.863 47.619 0.00 0.00 0.00 2.32
747 749 0.531657 TCCCTGATTTGCCGCATTTG 59.468 50.000 0.00 0.00 0.00 2.32
748 750 1.085501 CCCTGATTTGCCGCATTTGC 61.086 55.000 0.00 0.00 37.78 3.68
749 751 0.108520 CCTGATTTGCCGCATTTGCT 60.109 50.000 0.00 0.00 39.32 3.91
750 752 1.274596 CTGATTTGCCGCATTTGCTC 58.725 50.000 0.00 0.00 39.32 4.26
751 753 0.602060 TGATTTGCCGCATTTGCTCA 59.398 45.000 0.00 0.00 39.32 4.26
752 754 0.994263 GATTTGCCGCATTTGCTCAC 59.006 50.000 0.00 0.00 39.32 3.51
753 755 0.733566 ATTTGCCGCATTTGCTCACG 60.734 50.000 0.00 0.00 39.32 4.35
754 756 1.790090 TTTGCCGCATTTGCTCACGA 61.790 50.000 0.00 0.00 39.32 4.35
755 757 2.202349 GCCGCATTTGCTCACGAC 60.202 61.111 0.51 0.00 39.32 4.34
756 758 2.965147 GCCGCATTTGCTCACGACA 61.965 57.895 0.51 0.00 39.32 4.35
757 759 1.154413 CCGCATTTGCTCACGACAC 60.154 57.895 0.51 0.00 39.32 3.67
758 760 1.568612 CCGCATTTGCTCACGACACT 61.569 55.000 0.51 0.00 39.32 3.55
759 761 0.179240 CGCATTTGCTCACGACACTC 60.179 55.000 0.51 0.00 39.32 3.51
760 762 0.179240 GCATTTGCTCACGACACTCG 60.179 55.000 0.00 0.00 41.19 4.18
761 763 2.785652 GCATTTGCTCACGACACTCGT 61.786 52.381 0.00 0.00 45.85 4.18
762 764 3.487661 GCATTTGCTCACGACACTCGTA 61.488 50.000 0.00 0.00 44.29 3.43
763 765 4.939095 GCATTTGCTCACGACACTCGTAA 61.939 47.826 0.00 0.00 44.29 3.18
764 766 6.354491 GCATTTGCTCACGACACTCGTAAA 62.354 45.833 0.00 0.00 44.29 2.01
783 785 9.773328 CTCGTAAAGAGCAAATCAATTTCATAA 57.227 29.630 0.00 0.00 40.54 1.90
784 786 9.773328 TCGTAAAGAGCAAATCAATTTCATAAG 57.227 29.630 0.00 0.00 0.00 1.73
785 787 9.773328 CGTAAAGAGCAAATCAATTTCATAAGA 57.227 29.630 0.00 0.00 0.00 2.10
789 791 8.644318 AGAGCAAATCAATTTCATAAGATTGC 57.356 30.769 0.00 0.00 34.15 3.56
790 792 8.255206 AGAGCAAATCAATTTCATAAGATTGCA 58.745 29.630 9.03 0.00 34.15 4.08
791 793 8.958119 AGCAAATCAATTTCATAAGATTGCAT 57.042 26.923 9.03 0.00 34.15 3.96
803 805 9.554395 TTCATAAGATTGCATACGATTTTAGGA 57.446 29.630 0.00 0.00 29.80 2.94
804 806 9.554395 TCATAAGATTGCATACGATTTTAGGAA 57.446 29.630 0.00 0.00 29.15 3.36
807 809 8.506168 AAGATTGCATACGATTTTAGGAAAGA 57.494 30.769 0.00 0.00 0.00 2.52
808 810 8.147642 AGATTGCATACGATTTTAGGAAAGAG 57.852 34.615 0.00 0.00 0.00 2.85
809 811 7.987458 AGATTGCATACGATTTTAGGAAAGAGA 59.013 33.333 0.00 0.00 0.00 3.10
810 812 7.539712 TTGCATACGATTTTAGGAAAGAGAG 57.460 36.000 0.00 0.00 0.00 3.20
811 813 6.049149 TGCATACGATTTTAGGAAAGAGAGG 58.951 40.000 0.00 0.00 0.00 3.69
812 814 6.127168 TGCATACGATTTTAGGAAAGAGAGGA 60.127 38.462 0.00 0.00 0.00 3.71
813 815 6.931840 GCATACGATTTTAGGAAAGAGAGGAT 59.068 38.462 0.00 0.00 0.00 3.24
814 816 7.442666 GCATACGATTTTAGGAAAGAGAGGATT 59.557 37.037 0.00 0.00 0.00 3.01
815 817 8.768955 CATACGATTTTAGGAAAGAGAGGATTG 58.231 37.037 0.00 0.00 0.00 2.67
816 818 5.586643 ACGATTTTAGGAAAGAGAGGATTGC 59.413 40.000 0.00 0.00 0.00 3.56
817 819 5.819901 CGATTTTAGGAAAGAGAGGATTGCT 59.180 40.000 0.00 0.00 0.00 3.91
818 820 6.317391 CGATTTTAGGAAAGAGAGGATTGCTT 59.683 38.462 0.00 0.00 0.00 3.91
819 821 7.466590 CGATTTTAGGAAAGAGAGGATTGCTTC 60.467 40.741 0.00 0.00 0.00 3.86
820 822 3.643199 AGGAAAGAGAGGATTGCTTCC 57.357 47.619 0.00 0.00 45.85 3.46
830 832 3.699779 GGATTGCTTCCGGATTCTTTC 57.300 47.619 4.15 0.00 33.93 2.62
831 833 2.359214 GGATTGCTTCCGGATTCTTTCC 59.641 50.000 4.15 6.23 41.59 3.13
832 834 2.879103 TTGCTTCCGGATTCTTTCCT 57.121 45.000 4.15 0.00 42.99 3.36
833 835 2.879103 TGCTTCCGGATTCTTTCCTT 57.121 45.000 4.15 0.00 42.99 3.36
834 836 2.711542 TGCTTCCGGATTCTTTCCTTC 58.288 47.619 4.15 0.00 42.99 3.46
835 837 2.017782 GCTTCCGGATTCTTTCCTTCC 58.982 52.381 4.15 0.00 42.99 3.46
836 838 2.356227 GCTTCCGGATTCTTTCCTTCCT 60.356 50.000 4.15 0.00 42.99 3.36
837 839 3.874193 GCTTCCGGATTCTTTCCTTCCTT 60.874 47.826 4.15 0.00 42.99 3.36
838 840 4.336280 CTTCCGGATTCTTTCCTTCCTTT 58.664 43.478 4.15 0.00 42.99 3.11
871 874 1.529226 TGAACGGCGAATTGACCATT 58.471 45.000 16.62 0.00 0.00 3.16
878 881 2.476185 GGCGAATTGACCATTTGACTCG 60.476 50.000 0.00 0.00 31.79 4.18
905 914 1.728069 GCACTCGACCTCGCATCTA 59.272 57.895 0.00 0.00 39.60 1.98
910 919 1.469308 CTCGACCTCGCATCTATACCC 59.531 57.143 0.00 0.00 39.60 3.69
913 922 0.959553 ACCTCGCATCTATACCCACG 59.040 55.000 0.00 0.00 0.00 4.94
915 924 1.200252 CCTCGCATCTATACCCACGAG 59.800 57.143 0.00 0.00 44.84 4.18
921 930 0.032912 TCTATACCCACGAGCCACCA 60.033 55.000 0.00 0.00 0.00 4.17
922 931 0.828022 CTATACCCACGAGCCACCAA 59.172 55.000 0.00 0.00 0.00 3.67
923 932 0.538118 TATACCCACGAGCCACCAAC 59.462 55.000 0.00 0.00 0.00 3.77
1009 1020 5.780793 GCTTCCCGGATCCACCTATATATAT 59.219 44.000 13.41 0.00 36.31 0.86
1021 1034 4.407945 ACCTATATATATCCCGCACCAACC 59.592 45.833 0.00 0.00 0.00 3.77
1078 1097 5.005094 AGCTAATTACTACTAGCTCCTCCG 58.995 45.833 0.00 0.00 46.21 4.63
1102 2038 1.478510 CTTCTTCTAGCTCTCCGGCAA 59.521 52.381 0.00 0.00 34.17 4.52
1111 2047 1.363744 CTCTCCGGCAACAAAGCTAG 58.636 55.000 0.00 0.00 34.17 3.42
1114 2050 0.611200 TCCGGCAACAAAGCTAGCTA 59.389 50.000 19.70 0.00 34.17 3.32
1115 2051 1.009829 CCGGCAACAAAGCTAGCTAG 58.990 55.000 19.70 16.84 34.17 3.42
1199 2268 7.244886 TCAAGGGTTAAACTACCTACCTAAC 57.755 40.000 0.00 0.00 38.30 2.34
1246 2315 0.467384 CATGTCCTTCTCCGCCATCT 59.533 55.000 0.00 0.00 0.00 2.90
1260 2329 1.215382 CATCTCCGACGACAAGGCA 59.785 57.895 0.00 0.00 0.00 4.75
1302 2371 2.738643 CGAAGATGTCCGTGCATACCTT 60.739 50.000 0.00 0.00 0.00 3.50
1365 2434 1.002624 GTCCATGCCCGTTCTTCCA 60.003 57.895 0.00 0.00 0.00 3.53
1475 2544 4.436998 CTCTGTCGTCCCCGGCAC 62.437 72.222 0.00 0.00 45.14 5.01
1688 2757 1.004185 CATGAATCGCACTAGCACTGC 60.004 52.381 0.00 0.00 42.27 4.40
1984 3053 3.356639 GATGCTGACGCCGGTCTCA 62.357 63.158 1.90 2.91 43.79 3.27
2041 3110 2.014064 TTCCAACGTCGTTGACCCGA 62.014 55.000 33.84 21.37 45.28 5.14
2190 3259 1.825090 TTAGCATGAGCCCACACAAG 58.175 50.000 0.00 0.00 43.56 3.16
2245 3314 2.994995 TCCGTGATGCTCACCGGT 60.995 61.111 0.00 0.00 44.20 5.28
2334 3403 3.535561 CGATCTTAAGGACATGCAGGTT 58.464 45.455 5.07 0.00 0.00 3.50
2462 3531 3.459145 TGTTTGAAGATTTCGTCCGTGA 58.541 40.909 0.00 0.00 0.00 4.35
2739 3808 5.403766 CACGAGCAGTATCATGGATTAAGTC 59.596 44.000 0.00 0.00 0.00 3.01
3236 4352 9.352784 GCATTAATAAACAAATGTTCTGCACTA 57.647 29.630 0.00 0.00 37.25 2.74
3979 6876 1.275291 CTTGTACGTGGTGGTGGAGAT 59.725 52.381 0.00 0.00 0.00 2.75
4001 6898 4.783621 GCGTCCAGCCATGCAGGA 62.784 66.667 0.00 0.00 41.82 3.86
4017 6914 2.801631 GGAGAGGCATGGGTCGAGG 61.802 68.421 0.00 0.00 0.00 4.63
4081 6978 6.614694 TTTTTGCTACTGAGATGTAGGGTA 57.385 37.500 0.00 0.00 40.01 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 1.472552 CGTCACCCACTCACACAAAGA 60.473 52.381 0.00 0.00 0.00 2.52
58 59 0.937304 CGTCACCCACTCACACAAAG 59.063 55.000 0.00 0.00 0.00 2.77
61 62 2.108157 GCGTCACCCACTCACACA 59.892 61.111 0.00 0.00 0.00 3.72
62 63 2.964438 TTCGCGTCACCCACTCACAC 62.964 60.000 5.77 0.00 0.00 3.82
63 64 2.299503 TTTCGCGTCACCCACTCACA 62.300 55.000 5.77 0.00 0.00 3.58
64 65 1.593209 TTTCGCGTCACCCACTCAC 60.593 57.895 5.77 0.00 0.00 3.51
65 66 1.593209 GTTTCGCGTCACCCACTCA 60.593 57.895 5.77 0.00 0.00 3.41
66 67 0.038892 TAGTTTCGCGTCACCCACTC 60.039 55.000 5.77 0.00 0.00 3.51
67 68 0.390124 TTAGTTTCGCGTCACCCACT 59.610 50.000 5.77 3.08 0.00 4.00
68 69 1.070376 GTTTAGTTTCGCGTCACCCAC 60.070 52.381 5.77 0.00 0.00 4.61
69 70 1.219646 GTTTAGTTTCGCGTCACCCA 58.780 50.000 5.77 0.00 0.00 4.51
164 166 1.153549 GGAGCAGTTGGTAGCCTCG 60.154 63.158 0.00 0.00 0.00 4.63
206 208 3.591835 CCGCACACGCCCAAACTT 61.592 61.111 0.00 0.00 38.22 2.66
308 310 4.461431 GGTTTTATTTTCGTCCCACCTCAT 59.539 41.667 0.00 0.00 0.00 2.90
337 339 0.601558 GTCTCAGTTGGTAGGTCGCA 59.398 55.000 0.00 0.00 0.00 5.10
374 376 3.207778 TGTCCTACAACGGAAAAACCTG 58.792 45.455 0.00 0.00 34.20 4.00
375 377 3.564053 TGTCCTACAACGGAAAAACCT 57.436 42.857 0.00 0.00 34.20 3.50
376 378 4.841443 AATGTCCTACAACGGAAAAACC 57.159 40.909 0.00 0.00 34.20 3.27
379 381 6.311935 CGATCTAAATGTCCTACAACGGAAAA 59.688 38.462 0.00 0.00 34.20 2.29
380 382 5.808540 CGATCTAAATGTCCTACAACGGAAA 59.191 40.000 0.00 0.00 34.20 3.13
382 384 4.735578 GCGATCTAAATGTCCTACAACGGA 60.736 45.833 0.00 0.00 0.00 4.69
383 385 3.489785 GCGATCTAAATGTCCTACAACGG 59.510 47.826 0.00 0.00 0.00 4.44
384 386 4.109766 TGCGATCTAAATGTCCTACAACG 58.890 43.478 0.00 0.00 0.00 4.10
385 387 5.177696 GGATGCGATCTAAATGTCCTACAAC 59.822 44.000 0.00 0.00 0.00 3.32
387 389 4.558697 CGGATGCGATCTAAATGTCCTACA 60.559 45.833 0.00 0.00 0.00 2.74
388 390 3.921021 CGGATGCGATCTAAATGTCCTAC 59.079 47.826 0.00 0.00 0.00 3.18
390 392 2.628178 TCGGATGCGATCTAAATGTCCT 59.372 45.455 4.75 0.00 0.00 3.85
392 394 5.597813 AAATCGGATGCGATCTAAATGTC 57.402 39.130 22.82 0.00 0.00 3.06
393 395 6.929049 TCTAAAATCGGATGCGATCTAAATGT 59.071 34.615 22.82 4.39 0.00 2.71
394 396 7.351414 TCTAAAATCGGATGCGATCTAAATG 57.649 36.000 22.82 10.87 0.00 2.32
395 397 7.962964 TTCTAAAATCGGATGCGATCTAAAT 57.037 32.000 22.82 3.58 0.00 1.40
399 401 4.209288 CGTTTCTAAAATCGGATGCGATCT 59.791 41.667 22.82 14.86 0.00 2.75
400 402 4.208460 TCGTTTCTAAAATCGGATGCGATC 59.792 41.667 22.82 6.59 0.00 3.69
401 403 4.116961 TCGTTTCTAAAATCGGATGCGAT 58.883 39.130 17.07 17.07 0.00 4.58
403 405 3.550275 TCTCGTTTCTAAAATCGGATGCG 59.450 43.478 0.00 0.00 0.00 4.73
404 406 4.548346 CGTCTCGTTTCTAAAATCGGATGC 60.548 45.833 0.00 0.00 0.00 3.91
405 407 4.796830 TCGTCTCGTTTCTAAAATCGGATG 59.203 41.667 0.00 0.00 0.00 3.51
406 408 4.990257 TCGTCTCGTTTCTAAAATCGGAT 58.010 39.130 0.00 0.00 0.00 4.18
408 410 5.697848 AATCGTCTCGTTTCTAAAATCGG 57.302 39.130 0.00 0.00 0.00 4.18
409 411 9.342686 GAAATAATCGTCTCGTTTCTAAAATCG 57.657 33.333 0.00 0.00 0.00 3.34
410 412 9.634300 GGAAATAATCGTCTCGTTTCTAAAATC 57.366 33.333 0.00 0.00 0.00 2.17
412 414 7.201461 CCGGAAATAATCGTCTCGTTTCTAAAA 60.201 37.037 0.00 0.00 0.00 1.52
413 415 6.254157 CCGGAAATAATCGTCTCGTTTCTAAA 59.746 38.462 0.00 0.00 0.00 1.85
414 416 5.745294 CCGGAAATAATCGTCTCGTTTCTAA 59.255 40.000 0.00 0.00 0.00 2.10
415 417 5.066375 TCCGGAAATAATCGTCTCGTTTCTA 59.934 40.000 0.00 0.00 0.00 2.10
416 418 4.110482 CCGGAAATAATCGTCTCGTTTCT 58.890 43.478 0.00 0.00 0.00 2.52
417 419 4.107622 TCCGGAAATAATCGTCTCGTTTC 58.892 43.478 0.00 0.00 0.00 2.78
418 420 4.114058 TCCGGAAATAATCGTCTCGTTT 57.886 40.909 0.00 0.00 0.00 3.60
421 423 4.295870 TGAATCCGGAAATAATCGTCTCG 58.704 43.478 9.01 0.00 0.00 4.04
422 424 6.128526 GGAATGAATCCGGAAATAATCGTCTC 60.129 42.308 9.01 4.85 38.79 3.36
423 425 5.701290 GGAATGAATCCGGAAATAATCGTCT 59.299 40.000 9.01 0.00 38.79 4.18
424 426 5.928153 GGAATGAATCCGGAAATAATCGTC 58.072 41.667 9.01 4.26 38.79 4.20
436 438 3.847074 TGCCATGCAAGGAATGAATCCG 61.847 50.000 13.26 0.00 43.25 4.18
437 439 1.758280 TGCCATGCAAGGAATGAATCC 59.242 47.619 13.26 0.00 40.45 3.01
438 440 2.429610 AGTGCCATGCAAGGAATGAATC 59.570 45.455 13.26 0.00 41.47 2.52
439 441 2.167693 CAGTGCCATGCAAGGAATGAAT 59.832 45.455 13.26 0.00 41.47 2.57
440 442 1.546923 CAGTGCCATGCAAGGAATGAA 59.453 47.619 13.26 0.00 41.47 2.57
441 443 1.179152 CAGTGCCATGCAAGGAATGA 58.821 50.000 13.26 0.00 41.47 2.57
442 444 1.179152 TCAGTGCCATGCAAGGAATG 58.821 50.000 13.26 7.45 41.47 2.67
443 445 1.822990 CTTCAGTGCCATGCAAGGAAT 59.177 47.619 13.26 0.00 41.47 3.01
444 446 1.250328 CTTCAGTGCCATGCAAGGAA 58.750 50.000 13.26 0.00 41.47 3.36
445 447 0.609957 CCTTCAGTGCCATGCAAGGA 60.610 55.000 13.26 0.00 41.47 3.36
446 448 0.609957 TCCTTCAGTGCCATGCAAGG 60.610 55.000 2.86 2.86 41.47 3.61
447 449 0.809385 CTCCTTCAGTGCCATGCAAG 59.191 55.000 0.00 0.00 41.47 4.01
448 450 0.401356 TCTCCTTCAGTGCCATGCAA 59.599 50.000 0.00 0.00 41.47 4.08
449 451 0.035725 CTCTCCTTCAGTGCCATGCA 60.036 55.000 0.00 0.00 35.60 3.96
450 452 0.035630 ACTCTCCTTCAGTGCCATGC 60.036 55.000 0.00 0.00 0.00 4.06
451 453 1.277273 TGACTCTCCTTCAGTGCCATG 59.723 52.381 0.00 0.00 0.00 3.66
452 454 1.649321 TGACTCTCCTTCAGTGCCAT 58.351 50.000 0.00 0.00 0.00 4.40
453 455 1.423584 TTGACTCTCCTTCAGTGCCA 58.576 50.000 0.00 0.00 0.00 4.92
454 456 2.027745 TGATTGACTCTCCTTCAGTGCC 60.028 50.000 0.00 0.00 0.00 5.01
455 457 3.325293 TGATTGACTCTCCTTCAGTGC 57.675 47.619 0.00 0.00 0.00 4.40
456 458 5.732633 AGATTGATTGACTCTCCTTCAGTG 58.267 41.667 0.00 0.00 0.00 3.66
457 459 6.894654 TCTAGATTGATTGACTCTCCTTCAGT 59.105 38.462 0.00 0.00 0.00 3.41
458 460 7.202526 GTCTAGATTGATTGACTCTCCTTCAG 58.797 42.308 0.00 0.00 0.00 3.02
459 461 6.097554 GGTCTAGATTGATTGACTCTCCTTCA 59.902 42.308 0.00 0.00 0.00 3.02
460 462 6.462347 GGGTCTAGATTGATTGACTCTCCTTC 60.462 46.154 0.00 0.00 0.00 3.46
461 463 5.365314 GGGTCTAGATTGATTGACTCTCCTT 59.635 44.000 0.00 0.00 0.00 3.36
462 464 4.898861 GGGTCTAGATTGATTGACTCTCCT 59.101 45.833 0.00 0.00 0.00 3.69
463 465 4.651503 TGGGTCTAGATTGATTGACTCTCC 59.348 45.833 0.00 0.00 31.72 3.71
464 466 5.860941 TGGGTCTAGATTGATTGACTCTC 57.139 43.478 0.00 0.00 31.72 3.20
465 467 6.821616 AATGGGTCTAGATTGATTGACTCT 57.178 37.500 0.00 0.00 31.72 3.24
466 468 6.238593 GCAAATGGGTCTAGATTGATTGACTC 60.239 42.308 7.12 0.00 0.00 3.36
467 469 5.591877 GCAAATGGGTCTAGATTGATTGACT 59.408 40.000 7.12 0.00 0.00 3.41
468 470 5.357878 TGCAAATGGGTCTAGATTGATTGAC 59.642 40.000 7.12 0.00 0.00 3.18
469 471 5.508567 TGCAAATGGGTCTAGATTGATTGA 58.491 37.500 7.12 0.00 0.00 2.57
470 472 5.840243 TGCAAATGGGTCTAGATTGATTG 57.160 39.130 7.12 5.79 0.00 2.67
471 473 5.537674 GGATGCAAATGGGTCTAGATTGATT 59.462 40.000 7.12 0.00 0.00 2.57
472 474 5.075493 GGATGCAAATGGGTCTAGATTGAT 58.925 41.667 7.12 0.00 0.00 2.57
473 475 4.464008 GGATGCAAATGGGTCTAGATTGA 58.536 43.478 7.12 0.00 0.00 2.57
474 476 3.571401 GGGATGCAAATGGGTCTAGATTG 59.429 47.826 0.00 0.00 0.00 2.67
475 477 3.748668 CGGGATGCAAATGGGTCTAGATT 60.749 47.826 0.00 0.00 0.00 2.40
476 478 2.224621 CGGGATGCAAATGGGTCTAGAT 60.225 50.000 0.00 0.00 0.00 1.98
477 479 1.140852 CGGGATGCAAATGGGTCTAGA 59.859 52.381 0.00 0.00 0.00 2.43
478 480 1.597742 CGGGATGCAAATGGGTCTAG 58.402 55.000 0.00 0.00 0.00 2.43
479 481 0.182537 CCGGGATGCAAATGGGTCTA 59.817 55.000 0.00 0.00 0.00 2.59
480 482 1.076777 CCGGGATGCAAATGGGTCT 60.077 57.895 0.00 0.00 0.00 3.85
481 483 2.127232 CCCGGGATGCAAATGGGTC 61.127 63.158 18.48 0.00 35.05 4.46
482 484 2.043046 CCCGGGATGCAAATGGGT 60.043 61.111 18.48 0.00 35.05 4.51
483 485 1.264045 AAACCCGGGATGCAAATGGG 61.264 55.000 32.02 13.39 45.70 4.00
484 486 0.612744 AAAACCCGGGATGCAAATGG 59.387 50.000 32.02 0.00 0.00 3.16
485 487 1.274728 TCAAAACCCGGGATGCAAATG 59.725 47.619 32.02 15.36 0.00 2.32
486 488 1.638529 TCAAAACCCGGGATGCAAAT 58.361 45.000 32.02 0.00 0.00 2.32
487 489 1.414158 TTCAAAACCCGGGATGCAAA 58.586 45.000 32.02 12.91 0.00 3.68
488 490 1.414158 TTTCAAAACCCGGGATGCAA 58.586 45.000 32.02 16.44 0.00 4.08
489 491 1.342819 CTTTTCAAAACCCGGGATGCA 59.657 47.619 32.02 10.85 0.00 3.96
490 492 1.616374 TCTTTTCAAAACCCGGGATGC 59.384 47.619 32.02 0.00 0.00 3.91
491 493 2.231235 CCTCTTTTCAAAACCCGGGATG 59.769 50.000 32.02 22.37 0.00 3.51
492 494 2.525368 CCTCTTTTCAAAACCCGGGAT 58.475 47.619 32.02 14.52 0.00 3.85
493 495 1.479757 CCCTCTTTTCAAAACCCGGGA 60.480 52.381 32.02 0.00 32.10 5.14
494 496 0.966179 CCCTCTTTTCAAAACCCGGG 59.034 55.000 22.25 22.25 0.00 5.73
495 497 0.966179 CCCCTCTTTTCAAAACCCGG 59.034 55.000 0.00 0.00 0.00 5.73
496 498 1.699730 ACCCCTCTTTTCAAAACCCG 58.300 50.000 0.00 0.00 0.00 5.28
497 499 2.484770 GCAACCCCTCTTTTCAAAACCC 60.485 50.000 0.00 0.00 0.00 4.11
498 500 2.801699 CGCAACCCCTCTTTTCAAAACC 60.802 50.000 0.00 0.00 0.00 3.27
499 501 2.159156 ACGCAACCCCTCTTTTCAAAAC 60.159 45.455 0.00 0.00 0.00 2.43
500 502 2.100087 GACGCAACCCCTCTTTTCAAAA 59.900 45.455 0.00 0.00 0.00 2.44
501 503 1.679153 GACGCAACCCCTCTTTTCAAA 59.321 47.619 0.00 0.00 0.00 2.69
502 504 1.314730 GACGCAACCCCTCTTTTCAA 58.685 50.000 0.00 0.00 0.00 2.69
503 505 0.536460 GGACGCAACCCCTCTTTTCA 60.536 55.000 0.00 0.00 0.00 2.69
504 506 0.536460 TGGACGCAACCCCTCTTTTC 60.536 55.000 0.00 0.00 0.00 2.29
505 507 0.537371 CTGGACGCAACCCCTCTTTT 60.537 55.000 0.00 0.00 0.00 2.27
506 508 1.073199 CTGGACGCAACCCCTCTTT 59.927 57.895 0.00 0.00 0.00 2.52
507 509 1.201429 ATCTGGACGCAACCCCTCTT 61.201 55.000 0.00 0.00 0.00 2.85
508 510 1.201429 AATCTGGACGCAACCCCTCT 61.201 55.000 0.00 0.00 0.00 3.69
509 511 0.744771 GAATCTGGACGCAACCCCTC 60.745 60.000 0.00 0.00 0.00 4.30
510 512 1.299976 GAATCTGGACGCAACCCCT 59.700 57.895 0.00 0.00 0.00 4.79
511 513 1.749258 GGAATCTGGACGCAACCCC 60.749 63.158 0.00 0.00 0.00 4.95
512 514 0.394352 ATGGAATCTGGACGCAACCC 60.394 55.000 0.00 0.00 0.00 4.11
513 515 1.017387 GATGGAATCTGGACGCAACC 58.983 55.000 0.00 0.00 41.17 3.77
514 516 1.017387 GGATGGAATCTGGACGCAAC 58.983 55.000 0.00 0.00 44.71 4.17
515 517 0.107214 GGGATGGAATCTGGACGCAA 60.107 55.000 0.00 0.00 44.71 4.85
516 518 0.982852 AGGGATGGAATCTGGACGCA 60.983 55.000 0.00 0.00 44.71 5.24
517 519 0.250081 GAGGGATGGAATCTGGACGC 60.250 60.000 0.00 0.00 44.71 5.19
518 520 1.069823 CAGAGGGATGGAATCTGGACG 59.930 57.143 0.00 0.00 44.71 4.79
519 521 2.926778 CAGAGGGATGGAATCTGGAC 57.073 55.000 0.00 0.00 44.71 4.02
532 534 0.182299 GGCAAATCTCTCCCAGAGGG 59.818 60.000 0.00 0.00 42.54 4.30
533 535 0.179062 CGGCAAATCTCTCCCAGAGG 60.179 60.000 0.69 0.00 42.54 3.69
534 536 0.813210 GCGGCAAATCTCTCCCAGAG 60.813 60.000 0.00 0.00 43.64 3.35
535 537 1.221840 GCGGCAAATCTCTCCCAGA 59.778 57.895 0.00 0.00 34.78 3.86
536 538 0.465097 ATGCGGCAAATCTCTCCCAG 60.465 55.000 6.82 0.00 0.00 4.45
537 539 0.034186 AATGCGGCAAATCTCTCCCA 60.034 50.000 6.82 0.00 0.00 4.37
538 540 1.106285 AAATGCGGCAAATCTCTCCC 58.894 50.000 6.82 0.00 0.00 4.30
539 541 1.800286 GCAAATGCGGCAAATCTCTCC 60.800 52.381 6.82 0.00 0.00 3.71
540 542 1.553308 GCAAATGCGGCAAATCTCTC 58.447 50.000 6.82 0.00 0.00 3.20
541 543 3.727419 GCAAATGCGGCAAATCTCT 57.273 47.368 6.82 0.00 0.00 3.10
552 554 7.083858 TCTTTACAAGTGTTATGAGCAAATGC 58.916 34.615 0.00 0.00 42.49 3.56
553 555 7.272084 GCTCTTTACAAGTGTTATGAGCAAATG 59.728 37.037 22.86 1.69 45.71 2.32
554 556 7.308435 GCTCTTTACAAGTGTTATGAGCAAAT 58.692 34.615 22.86 0.00 45.71 2.32
555 557 6.668323 GCTCTTTACAAGTGTTATGAGCAAA 58.332 36.000 22.86 4.18 45.71 3.68
556 558 6.241207 GCTCTTTACAAGTGTTATGAGCAA 57.759 37.500 22.86 0.00 45.71 3.91
557 559 5.862924 GCTCTTTACAAGTGTTATGAGCA 57.137 39.130 22.86 0.00 45.71 4.26
558 560 5.862924 TGCTCTTTACAAGTGTTATGAGC 57.137 39.130 21.82 21.82 46.15 4.26
574 576 9.678260 ACATTCTTATGAAATAGACTTGCTCTT 57.322 29.630 0.00 0.00 35.63 2.85
593 595 9.331282 CTCTTTCCTAAAATCGGATACATTCTT 57.669 33.333 0.00 0.00 0.00 2.52
594 596 8.705594 TCTCTTTCCTAAAATCGGATACATTCT 58.294 33.333 0.00 0.00 0.00 2.40
595 597 8.888579 TCTCTTTCCTAAAATCGGATACATTC 57.111 34.615 0.00 0.00 0.00 2.67
596 598 7.934120 CCTCTCTTTCCTAAAATCGGATACATT 59.066 37.037 0.00 0.00 0.00 2.71
597 599 7.290248 TCCTCTCTTTCCTAAAATCGGATACAT 59.710 37.037 0.00 0.00 0.00 2.29
598 600 6.610020 TCCTCTCTTTCCTAAAATCGGATACA 59.390 38.462 0.00 0.00 0.00 2.29
599 601 7.052142 TCCTCTCTTTCCTAAAATCGGATAC 57.948 40.000 0.00 0.00 0.00 2.24
600 602 7.857404 ATCCTCTCTTTCCTAAAATCGGATA 57.143 36.000 0.00 0.00 0.00 2.59
601 603 6.755542 ATCCTCTCTTTCCTAAAATCGGAT 57.244 37.500 0.00 0.00 0.00 4.18
602 604 6.349300 CAATCCTCTCTTTCCTAAAATCGGA 58.651 40.000 0.00 0.00 0.00 4.55
603 605 5.008118 GCAATCCTCTCTTTCCTAAAATCGG 59.992 44.000 0.00 0.00 0.00 4.18
604 606 5.819901 AGCAATCCTCTCTTTCCTAAAATCG 59.180 40.000 0.00 0.00 0.00 3.34
605 607 7.637631 AAGCAATCCTCTCTTTCCTAAAATC 57.362 36.000 0.00 0.00 0.00 2.17
606 608 7.148171 CGAAAGCAATCCTCTCTTTCCTAAAAT 60.148 37.037 7.96 0.00 41.37 1.82
607 609 6.149474 CGAAAGCAATCCTCTCTTTCCTAAAA 59.851 38.462 7.96 0.00 41.37 1.52
608 610 5.643777 CGAAAGCAATCCTCTCTTTCCTAAA 59.356 40.000 7.96 0.00 41.37 1.85
609 611 5.178797 CGAAAGCAATCCTCTCTTTCCTAA 58.821 41.667 7.96 0.00 41.37 2.69
610 612 4.383118 CCGAAAGCAATCCTCTCTTTCCTA 60.383 45.833 7.96 0.00 41.37 2.94
611 613 3.604582 CGAAAGCAATCCTCTCTTTCCT 58.395 45.455 7.96 0.00 41.37 3.36
612 614 2.680339 CCGAAAGCAATCCTCTCTTTCC 59.320 50.000 7.96 0.00 41.37 3.13
613 615 3.600388 TCCGAAAGCAATCCTCTCTTTC 58.400 45.455 0.00 0.00 41.14 2.62
614 616 3.703001 TCCGAAAGCAATCCTCTCTTT 57.297 42.857 0.00 0.00 33.23 2.52
615 617 3.922171 ATCCGAAAGCAATCCTCTCTT 57.078 42.857 0.00 0.00 0.00 2.85
616 618 3.198635 TGAATCCGAAAGCAATCCTCTCT 59.801 43.478 0.00 0.00 0.00 3.10
617 619 3.535561 TGAATCCGAAAGCAATCCTCTC 58.464 45.455 0.00 0.00 0.00 3.20
618 620 3.634397 TGAATCCGAAAGCAATCCTCT 57.366 42.857 0.00 0.00 0.00 3.69
619 621 4.261363 GGAATGAATCCGAAAGCAATCCTC 60.261 45.833 0.00 0.00 38.79 3.71
620 622 3.633986 GGAATGAATCCGAAAGCAATCCT 59.366 43.478 0.00 0.00 38.79 3.24
621 623 3.969899 GGAATGAATCCGAAAGCAATCC 58.030 45.455 0.00 0.00 38.79 3.01
631 633 3.847074 TGCCATGCAAGGAATGAATCCG 61.847 50.000 13.26 0.00 43.25 4.18
632 634 1.758280 TGCCATGCAAGGAATGAATCC 59.242 47.619 13.26 0.00 40.45 3.01
633 635 2.429610 AGTGCCATGCAAGGAATGAATC 59.570 45.455 13.26 0.00 41.47 2.52
634 636 2.167693 CAGTGCCATGCAAGGAATGAAT 59.832 45.455 13.26 0.00 41.47 2.57
635 637 1.546923 CAGTGCCATGCAAGGAATGAA 59.453 47.619 13.26 0.00 41.47 2.57
636 638 1.179152 CAGTGCCATGCAAGGAATGA 58.821 50.000 13.26 0.00 41.47 2.57
637 639 1.179152 TCAGTGCCATGCAAGGAATG 58.821 50.000 13.26 7.45 41.47 2.67
638 640 1.822990 CTTCAGTGCCATGCAAGGAAT 59.177 47.619 13.26 0.00 41.47 3.01
639 641 1.202915 TCTTCAGTGCCATGCAAGGAA 60.203 47.619 13.26 0.00 41.47 3.36
640 642 0.401356 TCTTCAGTGCCATGCAAGGA 59.599 50.000 13.26 0.00 41.47 3.36
641 643 1.201647 CTTCTTCAGTGCCATGCAAGG 59.798 52.381 2.86 2.86 41.47 3.61
642 644 2.156917 TCTTCTTCAGTGCCATGCAAG 58.843 47.619 0.00 0.00 41.47 4.01
643 645 2.156917 CTCTTCTTCAGTGCCATGCAA 58.843 47.619 0.00 0.00 41.47 4.08
644 646 1.072806 ACTCTTCTTCAGTGCCATGCA 59.927 47.619 0.00 0.00 35.60 3.96
645 647 1.818642 ACTCTTCTTCAGTGCCATGC 58.181 50.000 0.00 0.00 0.00 4.06
646 648 5.947228 TTTTACTCTTCTTCAGTGCCATG 57.053 39.130 0.00 0.00 0.00 3.66
647 649 6.716628 TGATTTTTACTCTTCTTCAGTGCCAT 59.283 34.615 0.00 0.00 0.00 4.40
648 650 6.061441 TGATTTTTACTCTTCTTCAGTGCCA 58.939 36.000 0.00 0.00 0.00 4.92
649 651 6.560253 TGATTTTTACTCTTCTTCAGTGCC 57.440 37.500 0.00 0.00 0.00 5.01
650 652 8.078596 ACATTGATTTTTACTCTTCTTCAGTGC 58.921 33.333 0.00 0.00 0.00 4.40
657 659 9.753674 TGGGATTACATTGATTTTTACTCTTCT 57.246 29.630 0.00 0.00 0.00 2.85
662 664 9.382275 GCAAATGGGATTACATTGATTTTTACT 57.618 29.630 0.00 0.00 40.71 2.24
663 665 8.327429 CGCAAATGGGATTACATTGATTTTTAC 58.673 33.333 0.00 0.00 40.71 2.01
664 666 8.037758 ACGCAAATGGGATTACATTGATTTTTA 58.962 29.630 4.34 0.00 40.71 1.52
665 667 6.878389 ACGCAAATGGGATTACATTGATTTTT 59.122 30.769 4.34 0.00 40.71 1.94
666 668 6.405538 ACGCAAATGGGATTACATTGATTTT 58.594 32.000 4.34 0.00 40.71 1.82
667 669 5.976458 ACGCAAATGGGATTACATTGATTT 58.024 33.333 4.34 0.00 40.71 2.17
668 670 5.596836 ACGCAAATGGGATTACATTGATT 57.403 34.783 4.34 0.00 40.71 2.57
669 671 5.451798 GGAACGCAAATGGGATTACATTGAT 60.452 40.000 4.34 0.00 40.71 2.57
670 672 4.142271 GGAACGCAAATGGGATTACATTGA 60.142 41.667 4.34 0.00 40.71 2.57
671 673 4.111916 GGAACGCAAATGGGATTACATTG 58.888 43.478 4.34 0.00 40.71 2.82
672 674 4.385358 GGAACGCAAATGGGATTACATT 57.615 40.909 4.34 0.00 42.56 2.71
689 691 2.427095 CCCCTCCATCAAAAATCGGAAC 59.573 50.000 0.00 0.00 0.00 3.62
690 692 2.310349 TCCCCTCCATCAAAAATCGGAA 59.690 45.455 0.00 0.00 0.00 4.30
691 693 1.919654 TCCCCTCCATCAAAAATCGGA 59.080 47.619 0.00 0.00 0.00 4.55
692 694 2.435372 TCCCCTCCATCAAAAATCGG 57.565 50.000 0.00 0.00 0.00 4.18
693 695 3.491447 GCAATCCCCTCCATCAAAAATCG 60.491 47.826 0.00 0.00 0.00 3.34
694 696 3.491447 CGCAATCCCCTCCATCAAAAATC 60.491 47.826 0.00 0.00 0.00 2.17
695 697 2.431782 CGCAATCCCCTCCATCAAAAAT 59.568 45.455 0.00 0.00 0.00 1.82
696 698 1.824230 CGCAATCCCCTCCATCAAAAA 59.176 47.619 0.00 0.00 0.00 1.94
697 699 1.272425 ACGCAATCCCCTCCATCAAAA 60.272 47.619 0.00 0.00 0.00 2.44
698 700 0.331278 ACGCAATCCCCTCCATCAAA 59.669 50.000 0.00 0.00 0.00 2.69
699 701 0.107214 GACGCAATCCCCTCCATCAA 60.107 55.000 0.00 0.00 0.00 2.57
700 702 1.526887 GACGCAATCCCCTCCATCA 59.473 57.895 0.00 0.00 0.00 3.07
701 703 1.227973 GGACGCAATCCCCTCCATC 60.228 63.158 0.00 0.00 42.46 3.51
702 704 2.919043 GGACGCAATCCCCTCCAT 59.081 61.111 0.00 0.00 42.46 3.41
703 705 3.781307 CGGACGCAATCCCCTCCA 61.781 66.667 0.00 0.00 46.04 3.86
704 706 4.547367 CCGGACGCAATCCCCTCC 62.547 72.222 0.00 0.00 46.04 4.30
705 707 2.325393 AATCCGGACGCAATCCCCTC 62.325 60.000 6.12 0.00 46.04 4.30
706 708 2.325393 GAATCCGGACGCAATCCCCT 62.325 60.000 6.12 0.00 46.04 4.79
707 709 1.892391 GAATCCGGACGCAATCCCC 60.892 63.158 6.12 0.00 46.04 4.81
708 710 1.892391 GGAATCCGGACGCAATCCC 60.892 63.158 6.12 0.00 46.04 3.85
709 711 0.535102 ATGGAATCCGGACGCAATCC 60.535 55.000 6.12 10.62 45.20 3.01
710 712 0.868406 GATGGAATCCGGACGCAATC 59.132 55.000 6.12 6.66 37.38 2.67
711 713 3.006672 GATGGAATCCGGACGCAAT 57.993 52.632 6.12 0.00 37.38 3.56
712 714 4.532490 GATGGAATCCGGACGCAA 57.468 55.556 6.12 0.00 37.38 4.85
721 723 1.610522 CGGCAAATCAGGGATGGAATC 59.389 52.381 0.00 0.00 44.55 2.52
722 724 1.696063 CGGCAAATCAGGGATGGAAT 58.304 50.000 0.00 0.00 0.00 3.01
723 725 1.037030 GCGGCAAATCAGGGATGGAA 61.037 55.000 0.00 0.00 0.00 3.53
724 726 1.453745 GCGGCAAATCAGGGATGGA 60.454 57.895 0.00 0.00 0.00 3.41
725 727 1.111116 ATGCGGCAAATCAGGGATGG 61.111 55.000 6.82 0.00 0.00 3.51
726 728 0.748450 AATGCGGCAAATCAGGGATG 59.252 50.000 6.82 0.00 0.00 3.51
727 729 1.137479 CAAATGCGGCAAATCAGGGAT 59.863 47.619 6.82 0.00 0.00 3.85
728 730 0.531657 CAAATGCGGCAAATCAGGGA 59.468 50.000 6.82 0.00 0.00 4.20
729 731 1.085501 GCAAATGCGGCAAATCAGGG 61.086 55.000 6.82 0.00 0.00 4.45
730 732 2.375981 GCAAATGCGGCAAATCAGG 58.624 52.632 6.82 0.00 0.00 3.86
740 742 3.716739 CGAGTGTCGTGAGCAAATGCG 62.717 57.143 0.00 0.00 39.66 4.73
741 743 0.179240 CGAGTGTCGTGAGCAAATGC 60.179 55.000 0.00 0.00 36.82 3.56
742 744 3.935133 CGAGTGTCGTGAGCAAATG 57.065 52.632 0.00 0.00 34.72 2.32
752 754 3.673338 TGATTTGCTCTTTACGAGTGTCG 59.327 43.478 0.00 0.00 46.93 4.35
753 755 5.591643 TTGATTTGCTCTTTACGAGTGTC 57.408 39.130 0.00 0.00 41.98 3.67
754 756 6.560253 AATTGATTTGCTCTTTACGAGTGT 57.440 33.333 0.00 0.00 41.98 3.55
755 757 7.077605 TGAAATTGATTTGCTCTTTACGAGTG 58.922 34.615 0.00 0.00 41.98 3.51
756 758 7.202016 TGAAATTGATTTGCTCTTTACGAGT 57.798 32.000 0.00 0.00 41.98 4.18
757 759 9.773328 TTATGAAATTGATTTGCTCTTTACGAG 57.227 29.630 0.00 0.00 42.88 4.18
758 760 9.773328 CTTATGAAATTGATTTGCTCTTTACGA 57.227 29.630 0.00 0.00 0.00 3.43
759 761 9.773328 TCTTATGAAATTGATTTGCTCTTTACG 57.227 29.630 0.00 0.00 0.00 3.18
763 765 9.095065 GCAATCTTATGAAATTGATTTGCTCTT 57.905 29.630 0.00 0.00 35.35 2.85
764 766 8.255206 TGCAATCTTATGAAATTGATTTGCTCT 58.745 29.630 10.39 0.00 35.35 4.09
765 767 8.415192 TGCAATCTTATGAAATTGATTTGCTC 57.585 30.769 10.39 0.00 35.35 4.26
766 768 8.958119 ATGCAATCTTATGAAATTGATTTGCT 57.042 26.923 0.00 0.00 35.35 3.91
777 779 9.554395 TCCTAAAATCGTATGCAATCTTATGAA 57.446 29.630 0.00 0.00 0.00 2.57
778 780 9.554395 TTCCTAAAATCGTATGCAATCTTATGA 57.446 29.630 0.00 0.00 0.00 2.15
781 783 9.607988 TCTTTCCTAAAATCGTATGCAATCTTA 57.392 29.630 0.00 0.00 0.00 2.10
782 784 8.506168 TCTTTCCTAAAATCGTATGCAATCTT 57.494 30.769 0.00 0.00 0.00 2.40
783 785 7.987458 TCTCTTTCCTAAAATCGTATGCAATCT 59.013 33.333 0.00 0.00 0.00 2.40
784 786 8.142994 TCTCTTTCCTAAAATCGTATGCAATC 57.857 34.615 0.00 0.00 0.00 2.67
785 787 7.227512 CCTCTCTTTCCTAAAATCGTATGCAAT 59.772 37.037 0.00 0.00 0.00 3.56
786 788 6.538742 CCTCTCTTTCCTAAAATCGTATGCAA 59.461 38.462 0.00 0.00 0.00 4.08
787 789 6.049149 CCTCTCTTTCCTAAAATCGTATGCA 58.951 40.000 0.00 0.00 0.00 3.96
788 790 6.281405 TCCTCTCTTTCCTAAAATCGTATGC 58.719 40.000 0.00 0.00 0.00 3.14
789 791 8.768955 CAATCCTCTCTTTCCTAAAATCGTATG 58.231 37.037 0.00 0.00 0.00 2.39
790 792 7.442666 GCAATCCTCTCTTTCCTAAAATCGTAT 59.557 37.037 0.00 0.00 0.00 3.06
791 793 6.761714 GCAATCCTCTCTTTCCTAAAATCGTA 59.238 38.462 0.00 0.00 0.00 3.43
792 794 5.586643 GCAATCCTCTCTTTCCTAAAATCGT 59.413 40.000 0.00 0.00 0.00 3.73
793 795 5.819901 AGCAATCCTCTCTTTCCTAAAATCG 59.180 40.000 0.00 0.00 0.00 3.34
794 796 7.201776 GGAAGCAATCCTCTCTTTCCTAAAATC 60.202 40.741 1.50 0.00 45.56 2.17
795 797 6.605194 GGAAGCAATCCTCTCTTTCCTAAAAT 59.395 38.462 1.50 0.00 45.56 1.82
796 798 5.946377 GGAAGCAATCCTCTCTTTCCTAAAA 59.054 40.000 1.50 0.00 45.56 1.52
797 799 5.501156 GGAAGCAATCCTCTCTTTCCTAAA 58.499 41.667 1.50 0.00 45.56 1.85
798 800 4.383118 CGGAAGCAATCCTCTCTTTCCTAA 60.383 45.833 6.95 0.00 46.98 2.69
799 801 3.133003 CGGAAGCAATCCTCTCTTTCCTA 59.867 47.826 6.95 0.00 46.98 2.94
800 802 2.093235 CGGAAGCAATCCTCTCTTTCCT 60.093 50.000 6.95 0.00 46.98 3.36
801 803 2.284190 CGGAAGCAATCCTCTCTTTCC 58.716 52.381 6.95 0.00 46.98 3.13
802 804 2.093447 TCCGGAAGCAATCCTCTCTTTC 60.093 50.000 0.00 0.00 46.98 2.62
803 805 1.909302 TCCGGAAGCAATCCTCTCTTT 59.091 47.619 0.00 0.00 46.98 2.52
804 806 1.573108 TCCGGAAGCAATCCTCTCTT 58.427 50.000 0.00 0.00 46.98 2.85
805 807 1.799933 ATCCGGAAGCAATCCTCTCT 58.200 50.000 9.01 0.00 46.98 3.10
806 808 2.103941 AGAATCCGGAAGCAATCCTCTC 59.896 50.000 9.01 0.00 46.98 3.20
807 809 2.122768 AGAATCCGGAAGCAATCCTCT 58.877 47.619 9.01 0.00 46.98 3.69
808 810 2.629336 AGAATCCGGAAGCAATCCTC 57.371 50.000 9.01 0.00 46.98 3.71
809 811 3.282885 GAAAGAATCCGGAAGCAATCCT 58.717 45.455 9.01 0.00 46.98 3.24
810 812 2.359214 GGAAAGAATCCGGAAGCAATCC 59.641 50.000 9.01 10.76 45.57 3.01
811 813 3.699779 GGAAAGAATCCGGAAGCAATC 57.300 47.619 9.01 4.71 38.79 2.67
822 824 6.183360 GGATACTGCAAAGGAAGGAAAGAATC 60.183 42.308 0.00 0.00 0.00 2.52
823 825 5.654209 GGATACTGCAAAGGAAGGAAAGAAT 59.346 40.000 0.00 0.00 0.00 2.40
824 826 5.010282 GGATACTGCAAAGGAAGGAAAGAA 58.990 41.667 0.00 0.00 0.00 2.52
825 827 4.589908 GGATACTGCAAAGGAAGGAAAGA 58.410 43.478 0.00 0.00 0.00 2.52
826 828 3.375299 CGGATACTGCAAAGGAAGGAAAG 59.625 47.826 0.00 0.00 0.00 2.62
827 829 3.343617 CGGATACTGCAAAGGAAGGAAA 58.656 45.455 0.00 0.00 0.00 3.13
828 830 2.355716 CCGGATACTGCAAAGGAAGGAA 60.356 50.000 0.00 0.00 0.00 3.36
829 831 1.209504 CCGGATACTGCAAAGGAAGGA 59.790 52.381 0.00 0.00 0.00 3.36
830 832 1.209504 TCCGGATACTGCAAAGGAAGG 59.790 52.381 0.00 0.00 0.00 3.46
831 833 2.691409 TCCGGATACTGCAAAGGAAG 57.309 50.000 0.00 0.00 0.00 3.46
832 834 3.054728 TCAATCCGGATACTGCAAAGGAA 60.055 43.478 19.48 0.00 0.00 3.36
833 835 2.503765 TCAATCCGGATACTGCAAAGGA 59.496 45.455 19.48 1.85 0.00 3.36
834 836 2.917933 TCAATCCGGATACTGCAAAGG 58.082 47.619 19.48 0.00 0.00 3.11
835 837 3.242413 CGTTCAATCCGGATACTGCAAAG 60.242 47.826 19.48 8.23 0.00 2.77
836 838 2.675844 CGTTCAATCCGGATACTGCAAA 59.324 45.455 19.48 1.78 0.00 3.68
837 839 2.276201 CGTTCAATCCGGATACTGCAA 58.724 47.619 19.48 7.08 0.00 4.08
838 840 1.934589 CGTTCAATCCGGATACTGCA 58.065 50.000 19.48 0.02 0.00 4.41
862 865 2.736721 CGACACGAGTCAAATGGTCAAT 59.263 45.455 13.46 0.00 45.23 2.57
889 892 2.152830 GGTATAGATGCGAGGTCGAGT 58.847 52.381 2.94 0.00 43.02 4.18
895 904 1.200252 CTCGTGGGTATAGATGCGAGG 59.800 57.143 0.00 0.00 41.14 4.63
900 909 1.000955 GGTGGCTCGTGGGTATAGATG 59.999 57.143 0.00 0.00 0.00 2.90
905 914 1.298667 GTTGGTGGCTCGTGGGTAT 59.701 57.895 0.00 0.00 0.00 2.73
910 919 1.966451 GGAAGGTTGGTGGCTCGTG 60.966 63.158 0.00 0.00 0.00 4.35
913 922 0.393132 GCTAGGAAGGTTGGTGGCTC 60.393 60.000 0.00 0.00 0.00 4.70
915 924 0.678048 CTGCTAGGAAGGTTGGTGGC 60.678 60.000 0.00 0.00 0.00 5.01
921 930 2.269241 GGCGCTGCTAGGAAGGTT 59.731 61.111 7.64 0.00 0.00 3.50
922 931 3.787001 GGGCGCTGCTAGGAAGGT 61.787 66.667 7.64 0.00 0.00 3.50
923 932 4.899239 CGGGCGCTGCTAGGAAGG 62.899 72.222 7.64 0.00 0.00 3.46
1009 1020 3.172106 TTCCTGGTTGGTGCGGGA 61.172 61.111 0.00 0.00 37.07 5.14
1021 1034 1.815003 GCTTGGTGAATGGAGTTCCTG 59.185 52.381 0.00 0.00 35.91 3.86
1078 1097 1.336755 CGGAGAGCTAGAAGAAGAGGC 59.663 57.143 0.00 0.00 0.00 4.70
1111 2047 5.050431 GCTTAATGAAGTTGAGCTAGCTAGC 60.050 44.000 33.96 33.96 43.85 3.42
1114 2050 4.195416 GGCTTAATGAAGTTGAGCTAGCT 58.805 43.478 19.45 19.45 45.81 3.32
1115 2051 3.941483 TGGCTTAATGAAGTTGAGCTAGC 59.059 43.478 6.62 6.62 45.81 3.42
1116 2052 6.238593 GGATTGGCTTAATGAAGTTGAGCTAG 60.239 42.308 4.86 0.00 45.81 3.42
1199 2268 2.056223 CCCAAGCTGCCCATTCCTG 61.056 63.158 0.00 0.00 0.00 3.86
1246 2315 4.717629 CGCTGCCTTGTCGTCGGA 62.718 66.667 0.00 0.00 0.00 4.55
1275 2344 0.533491 CACGGACATCTTCGGGGTTA 59.467 55.000 0.00 0.00 0.00 2.85
1302 2371 1.006571 GAAGTCGACGGCCTTGTGA 60.007 57.895 10.46 0.00 0.00 3.58
1365 2434 0.392060 GGTATCCCGGCTTCACGTTT 60.392 55.000 0.00 0.00 0.00 3.60
1971 3040 4.451150 GGCATGAGACCGGCGTCA 62.451 66.667 6.01 4.77 41.87 4.35
1984 3053 0.664761 GCGCAGACATATGTTGGCAT 59.335 50.000 23.80 3.93 34.87 4.40
2159 3228 3.070159 GCTCATGCTAATGGAGTCCACTA 59.930 47.826 15.86 7.17 34.23 2.74
2160 3229 2.158842 GCTCATGCTAATGGAGTCCACT 60.159 50.000 15.86 6.08 34.23 4.00
2245 3314 1.066858 GGTCTCCAATGAGTCGCTCAA 60.067 52.381 12.43 0.00 44.04 3.02
2462 3531 1.203994 CCACCTCAAACCTATCGTCGT 59.796 52.381 0.00 0.00 0.00 4.34
2490 3559 3.385755 AGCACACAAGAGCAAAATTCCTT 59.614 39.130 0.00 0.00 33.43 3.36
2496 3565 3.951037 TCCTAAAGCACACAAGAGCAAAA 59.049 39.130 0.00 0.00 33.43 2.44
2853 3966 7.237209 GACCCTTGGTCGGTATATATAAACT 57.763 40.000 0.00 0.00 43.14 2.66
3236 4352 7.290014 ACTTTGGGAATTGGTTATCTTGTCTTT 59.710 33.333 0.00 0.00 0.00 2.52
4001 6898 3.474570 GCCTCGACCCATGCCTCT 61.475 66.667 0.00 0.00 0.00 3.69
4081 6978 3.941483 GAGAACATGAACGTCAATCCCAT 59.059 43.478 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.