Multiple sequence alignment - TraesCS2B01G542700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G542700 chr2B 100.000 5175 0 0 1 5175 740566338 740561164 0.000000e+00 9557
1 TraesCS2B01G542700 chr2B 96.584 527 16 2 1 525 631606908 631606382 0.000000e+00 872
2 TraesCS2B01G542700 chr2B 96.045 531 19 2 1 530 653683357 653682828 0.000000e+00 863
3 TraesCS2B01G542700 chr2B 83.195 601 76 18 1587 2177 740561938 740561353 1.280000e-145 527
4 TraesCS2B01G542700 chr2B 83.167 600 78 18 4401 4986 740564752 740564162 1.280000e-145 527
5 TraesCS2B01G542700 chr2B 89.147 258 19 8 522 774 253707104 253706851 3.890000e-81 313
6 TraesCS2B01G542700 chr2D 92.117 888 52 10 4296 5175 607637571 607636694 0.000000e+00 1236
7 TraesCS2B01G542700 chr2D 93.403 576 31 5 4604 5175 607640186 607639614 0.000000e+00 846
8 TraesCS2B01G542700 chr2D 87.623 711 68 13 1519 2228 607644487 607643796 0.000000e+00 808
9 TraesCS2B01G542700 chr2D 87.759 531 44 13 3684 4210 607640821 607640308 7.410000e-168 601
10 TraesCS2B01G542700 chr2D 92.584 418 19 7 2261 2675 607643794 607643386 1.600000e-164 590
11 TraesCS2B01G542700 chr2D 83.054 596 71 18 4401 4986 607644422 607643847 9.940000e-142 514
12 TraesCS2B01G542700 chr2D 82.167 600 82 16 1590 2177 607637467 607636881 4.660000e-135 492
13 TraesCS2B01G542700 chr2D 90.085 353 28 4 990 1335 607644974 607644622 7.900000e-123 451
14 TraesCS2B01G542700 chr2D 83.081 396 51 12 1788 2177 607640186 607639801 3.840000e-91 346
15 TraesCS2B01G542700 chr2D 94.811 212 11 0 3453 3664 607642807 607642596 1.070000e-86 331
16 TraesCS2B01G542700 chr2D 92.000 175 7 5 2761 2931 387193687 387193858 6.700000e-59 239
17 TraesCS2B01G542700 chr2D 89.130 184 16 3 2928 3110 607643242 607643062 5.210000e-55 226
18 TraesCS2B01G542700 chr2D 90.217 92 4 1 2679 2770 607643327 607643241 1.180000e-21 115
19 TraesCS2B01G542700 chr2A 87.879 891 64 18 4296 5175 739256062 739255205 0.000000e+00 1007
20 TraesCS2B01G542700 chr2A 80.452 1284 169 49 1519 2770 739275477 739274244 0.000000e+00 905
21 TraesCS2B01G542700 chr2A 87.358 530 41 14 2936 3448 739274241 739273721 7.470000e-163 584
22 TraesCS2B01G542700 chr2A 82.226 602 84 17 4401 4989 739275412 739274821 1.000000e-136 497
23 TraesCS2B01G542700 chr2A 78.974 585 82 25 1605 2177 739255937 739255382 1.370000e-95 361
24 TraesCS2B01G542700 chr2A 86.154 260 22 6 3813 4065 739271530 739271278 8.540000e-68 268
25 TraesCS2B01G542700 chr2A 90.533 169 15 1 4063 4231 739256437 739256270 6.740000e-54 222
26 TraesCS2B01G542700 chr2A 94.615 130 7 0 3533 3662 739273719 739273590 8.790000e-48 202
27 TraesCS2B01G542700 chr7B 96.798 531 16 1 1 531 667781830 667782359 0.000000e+00 885
28 TraesCS2B01G542700 chr7B 96.395 527 17 1 1 525 678280404 678280930 0.000000e+00 867
29 TraesCS2B01G542700 chr4A 96.768 526 16 1 1 525 151958848 151959373 0.000000e+00 876
30 TraesCS2B01G542700 chr6B 96.584 527 16 2 1 525 67945928 67945402 0.000000e+00 872
31 TraesCS2B01G542700 chr6B 96.241 532 19 1 1 531 126998513 126997982 0.000000e+00 870
32 TraesCS2B01G542700 chr1B 96.234 531 19 1 1 530 277458994 277458464 0.000000e+00 869
33 TraesCS2B01G542700 chr1B 96.395 527 17 2 1 525 295769258 295768732 0.000000e+00 867
34 TraesCS2B01G542700 chr1B 89.453 256 22 3 522 774 486495272 486495525 8.360000e-83 318
35 TraesCS2B01G542700 chr1B 94.792 96 3 2 775 869 486495655 486495749 1.160000e-31 148
36 TraesCS2B01G542700 chr3B 91.016 256 19 3 522 774 599097393 599097647 4.960000e-90 342
37 TraesCS2B01G542700 chr3B 94.845 97 4 1 775 870 599097780 599097876 3.230000e-32 150
38 TraesCS2B01G542700 chr6D 90.476 252 18 5 522 768 446618699 446618949 1.390000e-85 327
39 TraesCS2B01G542700 chr3A 89.844 256 19 6 522 774 735721858 735721607 6.460000e-84 322
40 TraesCS2B01G542700 chr4D 88.163 245 25 3 522 763 204709756 204709999 6.560000e-74 289
41 TraesCS2B01G542700 chr4D 91.228 171 14 1 2769 2938 334164552 334164382 1.120000e-56 231
42 TraesCS2B01G542700 chr4D 85.577 104 13 2 778 880 455752716 455752818 1.970000e-19 108
43 TraesCS2B01G542700 chr1D 88.211 246 24 4 522 763 46326317 46326073 6.560000e-74 289
44 TraesCS2B01G542700 chr1D 87.895 190 19 4 2742 2930 443117379 443117193 2.430000e-53 220
45 TraesCS2B01G542700 chr5D 86.719 256 24 8 525 774 407694878 407694627 5.100000e-70 276
46 TraesCS2B01G542700 chr7D 86.100 259 25 9 522 774 509832542 509832795 8.540000e-68 268
47 TraesCS2B01G542700 chr7D 92.308 169 12 1 2762 2929 199357179 199357347 6.700000e-59 239
48 TraesCS2B01G542700 chr5A 93.252 163 10 1 2768 2929 320214406 320214244 6.700000e-59 239
49 TraesCS2B01G542700 chr5A 93.210 162 10 1 2769 2929 558675497 558675658 2.410000e-58 237
50 TraesCS2B01G542700 chr3D 92.727 165 11 1 2768 2931 128214006 128214170 2.410000e-58 237
51 TraesCS2B01G542700 chr7A 92.216 167 11 2 2769 2933 156113386 156113552 8.660000e-58 235
52 TraesCS2B01G542700 chr7A 90.341 176 14 3 2755 2929 494786817 494786990 1.450000e-55 228


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G542700 chr2B 740561164 740566338 5174 True 9557.000000 9557 100.000000 1 5175 1 chr2B.!!$R4 5174
1 TraesCS2B01G542700 chr2B 631606382 631606908 526 True 872.000000 872 96.584000 1 525 1 chr2B.!!$R2 524
2 TraesCS2B01G542700 chr2B 653682828 653683357 529 True 863.000000 863 96.045000 1 530 1 chr2B.!!$R3 529
3 TraesCS2B01G542700 chr2B 740561353 740564752 3399 True 527.000000 527 83.181000 1587 4986 2 chr2B.!!$R5 3399
4 TraesCS2B01G542700 chr2D 607636694 607644974 8280 True 546.333333 1236 88.835917 990 5175 12 chr2D.!!$R1 4185
5 TraesCS2B01G542700 chr2A 739255205 739256437 1232 True 530.000000 1007 85.795333 1605 5175 3 chr2A.!!$R1 3570
6 TraesCS2B01G542700 chr2A 739271278 739275477 4199 True 491.200000 905 86.161000 1519 4989 5 chr2A.!!$R2 3470
7 TraesCS2B01G542700 chr7B 667781830 667782359 529 False 885.000000 885 96.798000 1 531 1 chr7B.!!$F1 530
8 TraesCS2B01G542700 chr7B 678280404 678280930 526 False 867.000000 867 96.395000 1 525 1 chr7B.!!$F2 524
9 TraesCS2B01G542700 chr4A 151958848 151959373 525 False 876.000000 876 96.768000 1 525 1 chr4A.!!$F1 524
10 TraesCS2B01G542700 chr6B 67945402 67945928 526 True 872.000000 872 96.584000 1 525 1 chr6B.!!$R1 524
11 TraesCS2B01G542700 chr6B 126997982 126998513 531 True 870.000000 870 96.241000 1 531 1 chr6B.!!$R2 530
12 TraesCS2B01G542700 chr1B 277458464 277458994 530 True 869.000000 869 96.234000 1 530 1 chr1B.!!$R1 529
13 TraesCS2B01G542700 chr1B 295768732 295769258 526 True 867.000000 867 96.395000 1 525 1 chr1B.!!$R2 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
940 946 0.105778 CTCGAATCCCCTGCTTCTCC 59.894 60.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
5057 10778 3.011949 TGCCAAAGATTGCGAAGTTTC 57.988 42.857 0.0 0.0 0.0 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 138 8.819974 CATGGCAATTTTAGTTTATGGTTCATC 58.180 33.333 0.00 0.00 0.00 2.92
222 224 8.174733 AGAAAATAGCTGAAACATATCATGGG 57.825 34.615 0.00 0.00 33.60 4.00
280 282 6.197096 GCAATAGACATGGCAACTTTTAATCG 59.803 38.462 0.00 0.00 30.66 3.34
451 457 0.584876 CATGCATGCGATGACGTGAT 59.415 50.000 14.93 0.00 41.98 3.06
485 491 0.461339 AGAAACGTGTGGTGCGTCTT 60.461 50.000 0.00 0.00 42.10 3.01
531 537 0.781787 GCGCGACCCAAAATGTTTTC 59.218 50.000 12.10 0.00 0.00 2.29
532 538 1.601914 GCGCGACCCAAAATGTTTTCT 60.602 47.619 12.10 0.00 0.00 2.52
533 539 2.315901 CGCGACCCAAAATGTTTTCTC 58.684 47.619 0.00 0.00 0.00 2.87
534 540 2.672714 GCGACCCAAAATGTTTTCTCC 58.327 47.619 0.00 0.00 0.00 3.71
535 541 2.035321 GCGACCCAAAATGTTTTCTCCA 59.965 45.455 0.00 0.00 0.00 3.86
536 542 3.306019 GCGACCCAAAATGTTTTCTCCAT 60.306 43.478 0.00 0.00 0.00 3.41
537 543 4.799255 GCGACCCAAAATGTTTTCTCCATT 60.799 41.667 0.00 0.00 34.07 3.16
538 544 5.296748 CGACCCAAAATGTTTTCTCCATTT 58.703 37.500 0.00 0.00 42.68 2.32
539 545 6.451393 CGACCCAAAATGTTTTCTCCATTTA 58.549 36.000 0.00 0.00 40.62 1.40
540 546 7.096551 CGACCCAAAATGTTTTCTCCATTTAT 58.903 34.615 0.00 0.00 40.62 1.40
541 547 7.602265 CGACCCAAAATGTTTTCTCCATTTATT 59.398 33.333 0.00 0.00 40.62 1.40
542 548 9.283768 GACCCAAAATGTTTTCTCCATTTATTT 57.716 29.630 0.00 0.00 40.62 1.40
543 549 9.283768 ACCCAAAATGTTTTCTCCATTTATTTC 57.716 29.630 0.00 0.00 40.62 2.17
544 550 8.442384 CCCAAAATGTTTTCTCCATTTATTTCG 58.558 33.333 0.00 0.00 40.62 3.46
545 551 9.202273 CCAAAATGTTTTCTCCATTTATTTCGA 57.798 29.630 0.00 0.00 40.62 3.71
558 564 9.757227 TCCATTTATTTCGAAAAATTTCTGTGT 57.243 25.926 15.66 0.00 36.49 3.72
565 571 8.657074 TTTCGAAAAATTTCTGTGTCTAGAGA 57.343 30.769 8.44 0.00 35.07 3.10
566 572 7.875316 TCGAAAAATTTCTGTGTCTAGAGAG 57.125 36.000 0.00 0.00 35.07 3.20
567 573 7.658261 TCGAAAAATTTCTGTGTCTAGAGAGA 58.342 34.615 0.00 0.00 35.07 3.10
568 574 8.141909 TCGAAAAATTTCTGTGTCTAGAGAGAA 58.858 33.333 0.00 0.00 35.07 2.87
569 575 8.930760 CGAAAAATTTCTGTGTCTAGAGAGAAT 58.069 33.333 8.80 0.00 35.07 2.40
593 599 5.581126 TTTTCACCATATCACTTGATGGC 57.419 39.130 1.77 0.00 45.63 4.40
594 600 3.929955 TCACCATATCACTTGATGGCA 57.070 42.857 1.77 0.00 45.63 4.92
595 601 4.442401 TCACCATATCACTTGATGGCAT 57.558 40.909 0.00 0.00 45.63 4.40
596 602 4.795469 TCACCATATCACTTGATGGCATT 58.205 39.130 0.00 0.00 45.63 3.56
597 603 5.202765 TCACCATATCACTTGATGGCATTT 58.797 37.500 0.00 0.00 45.63 2.32
598 604 5.657745 TCACCATATCACTTGATGGCATTTT 59.342 36.000 0.00 0.00 45.63 1.82
599 605 6.154877 TCACCATATCACTTGATGGCATTTTT 59.845 34.615 0.00 0.00 45.63 1.94
630 636 8.844441 TTTTTCGTAAACTTTTGTAGTGATGG 57.156 30.769 0.00 0.00 37.12 3.51
631 637 5.600908 TCGTAAACTTTTGTAGTGATGGC 57.399 39.130 0.00 0.00 37.12 4.40
632 638 5.057819 TCGTAAACTTTTGTAGTGATGGCA 58.942 37.500 0.00 0.00 37.12 4.92
633 639 5.527951 TCGTAAACTTTTGTAGTGATGGCAA 59.472 36.000 0.00 0.00 37.12 4.52
634 640 5.623673 CGTAAACTTTTGTAGTGATGGCAAC 59.376 40.000 0.00 0.00 37.12 4.17
635 641 5.852282 AAACTTTTGTAGTGATGGCAACT 57.148 34.783 0.00 0.00 37.12 3.16
636 642 5.852282 AACTTTTGTAGTGATGGCAACTT 57.148 34.783 0.00 0.00 37.12 2.66
637 643 5.852282 ACTTTTGTAGTGATGGCAACTTT 57.148 34.783 0.00 0.00 35.19 2.66
638 644 6.220726 ACTTTTGTAGTGATGGCAACTTTT 57.779 33.333 0.00 0.00 35.19 2.27
639 645 6.273071 ACTTTTGTAGTGATGGCAACTTTTC 58.727 36.000 0.00 0.00 35.19 2.29
640 646 4.481930 TTGTAGTGATGGCAACTTTTCG 57.518 40.909 0.00 0.00 37.61 3.46
641 647 3.472652 TGTAGTGATGGCAACTTTTCGT 58.527 40.909 0.00 0.00 37.61 3.85
642 648 4.633175 TGTAGTGATGGCAACTTTTCGTA 58.367 39.130 0.00 0.00 37.61 3.43
643 649 4.449743 TGTAGTGATGGCAACTTTTCGTAC 59.550 41.667 0.00 0.00 37.61 3.67
644 650 3.740115 AGTGATGGCAACTTTTCGTACT 58.260 40.909 0.00 0.00 37.61 2.73
645 651 3.498397 AGTGATGGCAACTTTTCGTACTG 59.502 43.478 0.00 0.00 37.61 2.74
646 652 3.250040 GTGATGGCAACTTTTCGTACTGT 59.750 43.478 0.00 0.00 37.61 3.55
647 653 4.449743 GTGATGGCAACTTTTCGTACTGTA 59.550 41.667 0.00 0.00 37.61 2.74
648 654 4.688879 TGATGGCAACTTTTCGTACTGTAG 59.311 41.667 0.00 0.00 37.61 2.74
649 655 4.325028 TGGCAACTTTTCGTACTGTAGA 57.675 40.909 0.00 0.00 37.61 2.59
650 656 4.304110 TGGCAACTTTTCGTACTGTAGAG 58.696 43.478 0.00 0.00 37.61 2.43
651 657 4.038282 TGGCAACTTTTCGTACTGTAGAGA 59.962 41.667 0.00 0.00 37.61 3.10
652 658 5.169295 GGCAACTTTTCGTACTGTAGAGAT 58.831 41.667 0.00 0.00 0.00 2.75
653 659 5.062308 GGCAACTTTTCGTACTGTAGAGATG 59.938 44.000 0.00 0.00 0.00 2.90
654 660 5.444745 GCAACTTTTCGTACTGTAGAGATGC 60.445 44.000 0.00 0.00 0.00 3.91
655 661 5.386958 ACTTTTCGTACTGTAGAGATGCA 57.613 39.130 0.00 0.00 0.00 3.96
656 662 5.967088 ACTTTTCGTACTGTAGAGATGCAT 58.033 37.500 0.00 0.00 0.00 3.96
657 663 5.807520 ACTTTTCGTACTGTAGAGATGCATG 59.192 40.000 2.46 0.00 0.00 4.06
658 664 4.983671 TTCGTACTGTAGAGATGCATGT 57.016 40.909 2.46 0.00 0.00 3.21
659 665 4.983671 TCGTACTGTAGAGATGCATGTT 57.016 40.909 2.46 0.00 0.00 2.71
660 666 4.672409 TCGTACTGTAGAGATGCATGTTG 58.328 43.478 2.46 0.00 0.00 3.33
661 667 3.243877 CGTACTGTAGAGATGCATGTTGC 59.756 47.826 2.46 0.00 45.29 4.17
662 668 2.636830 ACTGTAGAGATGCATGTTGCC 58.363 47.619 2.46 0.00 44.23 4.52
663 669 2.026915 ACTGTAGAGATGCATGTTGCCA 60.027 45.455 2.46 0.00 44.23 4.92
664 670 3.211865 CTGTAGAGATGCATGTTGCCAT 58.788 45.455 2.46 0.00 44.23 4.40
675 681 2.957402 TGTTGCCATGACTTCTTCCT 57.043 45.000 0.00 0.00 0.00 3.36
676 682 3.228188 TGTTGCCATGACTTCTTCCTT 57.772 42.857 0.00 0.00 0.00 3.36
677 683 3.565307 TGTTGCCATGACTTCTTCCTTT 58.435 40.909 0.00 0.00 0.00 3.11
678 684 3.960102 TGTTGCCATGACTTCTTCCTTTT 59.040 39.130 0.00 0.00 0.00 2.27
679 685 4.405358 TGTTGCCATGACTTCTTCCTTTTT 59.595 37.500 0.00 0.00 0.00 1.94
715 721 8.948631 TTTAAAACATAAACTTGAACATGGCA 57.051 26.923 0.00 0.00 0.00 4.92
716 722 8.948631 TTAAAACATAAACTTGAACATGGCAA 57.051 26.923 0.00 0.06 0.00 4.52
717 723 9.553064 TTAAAACATAAACTTGAACATGGCAAT 57.447 25.926 0.00 0.00 0.00 3.56
718 724 8.449251 AAAACATAAACTTGAACATGGCAATT 57.551 26.923 0.00 0.00 0.00 2.32
719 725 8.449251 AAACATAAACTTGAACATGGCAATTT 57.551 26.923 0.00 0.00 0.00 1.82
720 726 7.656707 ACATAAACTTGAACATGGCAATTTC 57.343 32.000 0.00 0.00 0.00 2.17
721 727 7.444299 ACATAAACTTGAACATGGCAATTTCT 58.556 30.769 11.42 0.00 0.00 2.52
722 728 7.933033 ACATAAACTTGAACATGGCAATTTCTT 59.067 29.630 11.42 2.49 0.00 2.52
723 729 8.776470 CATAAACTTGAACATGGCAATTTCTTT 58.224 29.630 11.42 7.35 0.00 2.52
724 730 6.849588 AACTTGAACATGGCAATTTCTTTC 57.150 33.333 11.42 1.19 0.00 2.62
725 731 5.916318 ACTTGAACATGGCAATTTCTTTCA 58.084 33.333 11.42 3.35 0.00 2.69
726 732 6.527423 ACTTGAACATGGCAATTTCTTTCAT 58.473 32.000 11.42 0.00 0.00 2.57
727 733 6.993902 ACTTGAACATGGCAATTTCTTTCATT 59.006 30.769 11.42 0.00 0.00 2.57
728 734 6.788684 TGAACATGGCAATTTCTTTCATTG 57.211 33.333 11.42 0.00 35.12 2.82
729 735 6.522946 TGAACATGGCAATTTCTTTCATTGA 58.477 32.000 11.42 0.00 34.05 2.57
730 736 6.990939 TGAACATGGCAATTTCTTTCATTGAA 59.009 30.769 11.42 0.00 34.05 2.69
731 737 7.662258 TGAACATGGCAATTTCTTTCATTGAAT 59.338 29.630 11.42 0.00 34.05 2.57
732 738 7.372451 ACATGGCAATTTCTTTCATTGAATG 57.628 32.000 0.00 0.00 35.45 2.67
733 739 6.373216 ACATGGCAATTTCTTTCATTGAATGG 59.627 34.615 5.20 3.77 34.57 3.16
734 740 4.696402 TGGCAATTTCTTTCATTGAATGGC 59.304 37.500 5.20 12.50 34.05 4.40
735 741 4.696402 GGCAATTTCTTTCATTGAATGGCA 59.304 37.500 13.83 0.00 34.05 4.92
736 742 5.181622 GGCAATTTCTTTCATTGAATGGCAA 59.818 36.000 13.83 8.01 41.53 4.52
737 743 6.294065 GGCAATTTCTTTCATTGAATGGCAAA 60.294 34.615 13.83 8.47 40.48 3.68
738 744 7.140048 GCAATTTCTTTCATTGAATGGCAAAA 58.860 30.769 5.20 2.57 40.48 2.44
739 745 7.325097 GCAATTTCTTTCATTGAATGGCAAAAG 59.675 33.333 5.20 8.16 40.48 2.27
740 746 8.347035 CAATTTCTTTCATTGAATGGCAAAAGT 58.653 29.630 13.89 4.87 40.48 2.66
741 747 7.481275 TTTCTTTCATTGAATGGCAAAAGTC 57.519 32.000 13.89 0.00 40.48 3.01
742 748 5.540911 TCTTTCATTGAATGGCAAAAGTCC 58.459 37.500 13.89 0.00 40.48 3.85
743 749 4.952071 TTCATTGAATGGCAAAAGTCCA 57.048 36.364 5.20 0.00 40.48 4.02
744 750 5.486735 TTCATTGAATGGCAAAAGTCCAT 57.513 34.783 5.20 0.00 45.70 3.41
745 751 4.823157 TCATTGAATGGCAAAAGTCCATG 58.177 39.130 5.20 0.00 43.13 3.66
746 752 3.681593 TTGAATGGCAAAAGTCCATGG 57.318 42.857 4.97 4.97 43.13 3.66
747 753 1.275856 TGAATGGCAAAAGTCCATGGC 59.724 47.619 6.96 2.00 43.13 4.40
751 757 2.477845 GGCAAAAGTCCATGGCAATT 57.522 45.000 6.96 0.00 41.38 2.32
752 758 2.781923 GGCAAAAGTCCATGGCAATTT 58.218 42.857 6.96 5.38 41.38 1.82
753 759 3.148412 GGCAAAAGTCCATGGCAATTTT 58.852 40.909 6.96 11.11 41.38 1.82
754 760 3.058085 GGCAAAAGTCCATGGCAATTTTG 60.058 43.478 27.24 27.24 41.51 2.44
755 761 3.565063 GCAAAAGTCCATGGCAATTTTGT 59.435 39.130 29.21 10.87 40.96 2.83
756 762 4.319694 GCAAAAGTCCATGGCAATTTTGTC 60.320 41.667 29.21 23.02 40.96 3.18
757 763 3.302365 AAGTCCATGGCAATTTTGTCG 57.698 42.857 6.96 0.00 35.00 4.35
758 764 2.238521 AGTCCATGGCAATTTTGTCGT 58.761 42.857 6.96 0.00 35.00 4.34
759 765 2.030007 AGTCCATGGCAATTTTGTCGTG 60.030 45.455 6.96 9.60 46.51 4.35
760 766 1.070038 CCATGGCAATTTTGTCGTGC 58.930 50.000 10.83 0.00 45.81 5.34
761 767 1.604947 CCATGGCAATTTTGTCGTGCA 60.605 47.619 10.83 0.00 45.81 4.57
762 768 2.133553 CATGGCAATTTTGTCGTGCAA 58.866 42.857 4.34 0.00 42.11 4.08
763 769 2.299993 TGGCAATTTTGTCGTGCAAA 57.700 40.000 0.00 4.35 44.52 3.68
764 770 2.200067 TGGCAATTTTGTCGTGCAAAG 58.800 42.857 0.00 0.00 46.40 2.77
765 771 1.526464 GGCAATTTTGTCGTGCAAAGG 59.474 47.619 0.00 4.65 46.40 3.11
766 772 2.468831 GCAATTTTGTCGTGCAAAGGA 58.531 42.857 0.00 0.00 46.40 3.36
767 773 2.218530 GCAATTTTGTCGTGCAAAGGAC 59.781 45.455 6.81 6.81 46.40 3.85
768 774 2.793278 ATTTTGTCGTGCAAAGGACC 57.207 45.000 10.29 0.00 46.40 4.46
769 775 1.464734 TTTTGTCGTGCAAAGGACCA 58.535 45.000 10.29 0.00 46.40 4.02
770 776 1.464734 TTTGTCGTGCAAAGGACCAA 58.535 45.000 10.29 4.41 41.68 3.67
771 777 1.686355 TTGTCGTGCAAAGGACCAAT 58.314 45.000 10.29 0.00 33.53 3.16
772 778 0.950836 TGTCGTGCAAAGGACCAATG 59.049 50.000 10.29 0.00 32.19 2.82
773 779 0.951558 GTCGTGCAAAGGACCAATGT 59.048 50.000 0.00 0.00 0.00 2.71
774 780 1.069227 GTCGTGCAAAGGACCAATGTC 60.069 52.381 0.00 0.00 40.98 3.06
775 781 0.110238 CGTGCAAAGGACCAATGTCG 60.110 55.000 0.00 0.00 42.73 4.35
776 782 1.234821 GTGCAAAGGACCAATGTCGA 58.765 50.000 0.00 0.00 42.73 4.20
777 783 1.197721 GTGCAAAGGACCAATGTCGAG 59.802 52.381 0.00 0.00 42.73 4.04
778 784 1.071542 TGCAAAGGACCAATGTCGAGA 59.928 47.619 0.00 0.00 42.73 4.04
779 785 2.151202 GCAAAGGACCAATGTCGAGAA 58.849 47.619 0.00 0.00 42.73 2.87
780 786 2.095718 GCAAAGGACCAATGTCGAGAAC 60.096 50.000 0.00 0.00 42.73 3.01
781 787 2.080286 AAGGACCAATGTCGAGAACG 57.920 50.000 0.00 0.00 42.73 3.95
782 788 1.254026 AGGACCAATGTCGAGAACGA 58.746 50.000 0.00 0.00 46.56 3.85
798 804 2.695646 GAAGCGTTCGGTCGATGC 59.304 61.111 9.17 9.17 0.00 3.91
799 805 2.799540 GAAGCGTTCGGTCGATGCC 61.800 63.158 12.30 0.00 0.00 4.40
800 806 4.814294 AGCGTTCGGTCGATGCCC 62.814 66.667 12.30 0.00 0.00 5.36
802 808 4.143333 CGTTCGGTCGATGCCCCT 62.143 66.667 0.00 0.00 0.00 4.79
803 809 2.202892 GTTCGGTCGATGCCCCTC 60.203 66.667 0.00 0.00 0.00 4.30
804 810 3.467226 TTCGGTCGATGCCCCTCC 61.467 66.667 0.00 0.00 0.00 4.30
808 814 4.222847 GTCGATGCCCCTCCCGTC 62.223 72.222 0.00 0.00 0.00 4.79
832 838 4.699522 GAAGCGTTCGGCCTGGGT 62.700 66.667 0.00 0.00 45.17 4.51
847 853 2.047179 GGTGCTCCCAGACCGAAC 60.047 66.667 0.00 0.00 0.00 3.95
848 854 2.432628 GTGCTCCCAGACCGAACG 60.433 66.667 0.00 0.00 0.00 3.95
849 855 3.691342 TGCTCCCAGACCGAACGG 61.691 66.667 11.83 11.83 42.03 4.44
862 868 0.636733 CGAACGGTCGGTTGTTATCG 59.363 55.000 16.82 0.00 43.81 2.92
863 869 1.728825 CGAACGGTCGGTTGTTATCGA 60.729 52.381 16.82 0.00 43.81 3.59
864 870 2.533266 GAACGGTCGGTTGTTATCGAT 58.467 47.619 2.16 2.16 39.50 3.59
865 871 1.917273 ACGGTCGGTTGTTATCGATG 58.083 50.000 8.54 0.00 37.73 3.84
866 872 1.203052 ACGGTCGGTTGTTATCGATGT 59.797 47.619 8.54 0.00 37.73 3.06
867 873 1.850441 CGGTCGGTTGTTATCGATGTC 59.150 52.381 8.54 1.35 37.73 3.06
868 874 2.199236 GGTCGGTTGTTATCGATGTCC 58.801 52.381 8.54 2.49 37.73 4.02
869 875 2.417651 GGTCGGTTGTTATCGATGTCCA 60.418 50.000 8.54 0.00 37.73 4.02
870 876 3.255725 GTCGGTTGTTATCGATGTCCAA 58.744 45.455 8.54 5.21 37.73 3.53
871 877 3.869246 GTCGGTTGTTATCGATGTCCAAT 59.131 43.478 8.54 0.00 37.73 3.16
872 878 5.045215 GTCGGTTGTTATCGATGTCCAATA 58.955 41.667 8.54 0.00 37.73 1.90
873 879 5.694910 GTCGGTTGTTATCGATGTCCAATAT 59.305 40.000 8.54 0.00 37.73 1.28
874 880 6.202188 GTCGGTTGTTATCGATGTCCAATATT 59.798 38.462 8.54 0.00 37.73 1.28
875 881 6.764085 TCGGTTGTTATCGATGTCCAATATTT 59.236 34.615 8.54 0.00 0.00 1.40
876 882 7.281324 TCGGTTGTTATCGATGTCCAATATTTT 59.719 33.333 8.54 0.00 0.00 1.82
877 883 7.913297 CGGTTGTTATCGATGTCCAATATTTTT 59.087 33.333 8.54 0.00 0.00 1.94
878 884 9.233232 GGTTGTTATCGATGTCCAATATTTTTC 57.767 33.333 8.54 0.00 0.00 2.29
879 885 9.233232 GTTGTTATCGATGTCCAATATTTTTCC 57.767 33.333 8.54 0.00 0.00 3.13
880 886 7.936584 TGTTATCGATGTCCAATATTTTTCCC 58.063 34.615 8.54 0.00 0.00 3.97
881 887 7.558081 TGTTATCGATGTCCAATATTTTTCCCA 59.442 33.333 8.54 0.00 0.00 4.37
882 888 5.828299 TCGATGTCCAATATTTTTCCCAC 57.172 39.130 0.00 0.00 0.00 4.61
883 889 4.334203 TCGATGTCCAATATTTTTCCCACG 59.666 41.667 0.00 0.00 0.00 4.94
884 890 3.859411 TGTCCAATATTTTTCCCACGC 57.141 42.857 0.00 0.00 0.00 5.34
885 891 2.494073 TGTCCAATATTTTTCCCACGCC 59.506 45.455 0.00 0.00 0.00 5.68
886 892 2.104170 TCCAATATTTTTCCCACGCCC 58.896 47.619 0.00 0.00 0.00 6.13
887 893 2.107366 CCAATATTTTTCCCACGCCCT 58.893 47.619 0.00 0.00 0.00 5.19
888 894 2.159114 CCAATATTTTTCCCACGCCCTG 60.159 50.000 0.00 0.00 0.00 4.45
889 895 1.111277 ATATTTTTCCCACGCCCTGC 58.889 50.000 0.00 0.00 0.00 4.85
890 896 0.251386 TATTTTTCCCACGCCCTGCA 60.251 50.000 0.00 0.00 0.00 4.41
891 897 0.904394 ATTTTTCCCACGCCCTGCAT 60.904 50.000 0.00 0.00 0.00 3.96
892 898 1.531739 TTTTTCCCACGCCCTGCATC 61.532 55.000 0.00 0.00 0.00 3.91
893 899 3.936772 TTTCCCACGCCCTGCATCC 62.937 63.158 0.00 0.00 0.00 3.51
905 911 4.802051 GCATCCGGCTGCCCTCAA 62.802 66.667 19.59 0.00 40.25 3.02
906 912 2.825836 CATCCGGCTGCCCTCAAC 60.826 66.667 14.12 0.00 0.00 3.18
907 913 4.115199 ATCCGGCTGCCCTCAACC 62.115 66.667 14.12 0.00 0.00 3.77
909 915 4.659172 CCGGCTGCCCTCAACCAA 62.659 66.667 14.12 0.00 0.00 3.67
910 916 2.361610 CGGCTGCCCTCAACCAAT 60.362 61.111 14.12 0.00 0.00 3.16
911 917 2.409870 CGGCTGCCCTCAACCAATC 61.410 63.158 14.12 0.00 0.00 2.67
912 918 2.409870 GGCTGCCCTCAACCAATCG 61.410 63.158 7.66 0.00 0.00 3.34
913 919 2.409870 GCTGCCCTCAACCAATCGG 61.410 63.158 0.00 0.00 38.77 4.18
914 920 1.299648 CTGCCCTCAACCAATCGGA 59.700 57.895 0.00 0.00 35.59 4.55
915 921 0.107017 CTGCCCTCAACCAATCGGAT 60.107 55.000 0.00 0.00 35.59 4.18
916 922 0.107214 TGCCCTCAACCAATCGGATC 60.107 55.000 0.00 0.00 35.59 3.36
917 923 0.107214 GCCCTCAACCAATCGGATCA 60.107 55.000 0.00 0.00 35.59 2.92
918 924 1.681780 GCCCTCAACCAATCGGATCAA 60.682 52.381 0.00 0.00 35.59 2.57
919 925 2.017049 CCCTCAACCAATCGGATCAAC 58.983 52.381 0.00 0.00 35.59 3.18
920 926 2.356125 CCCTCAACCAATCGGATCAACT 60.356 50.000 0.00 0.00 35.59 3.16
921 927 2.939103 CCTCAACCAATCGGATCAACTC 59.061 50.000 0.00 0.00 35.59 3.01
922 928 3.369892 CCTCAACCAATCGGATCAACTCT 60.370 47.826 0.00 0.00 35.59 3.24
923 929 3.861840 TCAACCAATCGGATCAACTCTC 58.138 45.455 0.00 0.00 35.59 3.20
924 930 2.586258 ACCAATCGGATCAACTCTCG 57.414 50.000 0.00 0.00 35.59 4.04
925 931 2.100197 ACCAATCGGATCAACTCTCGA 58.900 47.619 0.00 0.00 35.59 4.04
926 932 2.496070 ACCAATCGGATCAACTCTCGAA 59.504 45.455 0.00 0.00 32.71 3.71
927 933 3.133003 ACCAATCGGATCAACTCTCGAAT 59.867 43.478 0.00 0.00 32.71 3.34
928 934 3.738282 CCAATCGGATCAACTCTCGAATC 59.262 47.826 0.00 0.00 32.71 2.52
929 935 3.651803 ATCGGATCAACTCTCGAATCC 57.348 47.619 2.04 2.04 32.71 3.01
930 936 1.681793 TCGGATCAACTCTCGAATCCC 59.318 52.381 6.08 0.00 0.00 3.85
931 937 1.269831 CGGATCAACTCTCGAATCCCC 60.270 57.143 6.08 0.00 0.00 4.81
932 938 2.043227 GGATCAACTCTCGAATCCCCT 58.957 52.381 0.78 0.00 0.00 4.79
933 939 2.224161 GGATCAACTCTCGAATCCCCTG 60.224 54.545 0.78 0.00 0.00 4.45
934 940 0.537188 TCAACTCTCGAATCCCCTGC 59.463 55.000 0.00 0.00 0.00 4.85
935 941 0.539051 CAACTCTCGAATCCCCTGCT 59.461 55.000 0.00 0.00 0.00 4.24
936 942 1.065854 CAACTCTCGAATCCCCTGCTT 60.066 52.381 0.00 0.00 0.00 3.91
937 943 0.827368 ACTCTCGAATCCCCTGCTTC 59.173 55.000 0.00 0.00 0.00 3.86
938 944 1.118838 CTCTCGAATCCCCTGCTTCT 58.881 55.000 0.00 0.00 0.00 2.85
939 945 1.068434 CTCTCGAATCCCCTGCTTCTC 59.932 57.143 0.00 0.00 0.00 2.87
940 946 0.105778 CTCGAATCCCCTGCTTCTCC 59.894 60.000 0.00 0.00 0.00 3.71
941 947 1.227380 CGAATCCCCTGCTTCTCCG 60.227 63.158 0.00 0.00 0.00 4.63
942 948 1.676678 CGAATCCCCTGCTTCTCCGA 61.677 60.000 0.00 0.00 0.00 4.55
943 949 0.761802 GAATCCCCTGCTTCTCCGAT 59.238 55.000 0.00 0.00 0.00 4.18
944 950 0.761802 AATCCCCTGCTTCTCCGATC 59.238 55.000 0.00 0.00 0.00 3.69
945 951 1.124477 ATCCCCTGCTTCTCCGATCC 61.124 60.000 0.00 0.00 0.00 3.36
946 952 2.066393 CCCCTGCTTCTCCGATCCA 61.066 63.158 0.00 0.00 0.00 3.41
947 953 1.144936 CCCTGCTTCTCCGATCCAC 59.855 63.158 0.00 0.00 0.00 4.02
948 954 1.144936 CCTGCTTCTCCGATCCACC 59.855 63.158 0.00 0.00 0.00 4.61
949 955 1.144936 CTGCTTCTCCGATCCACCC 59.855 63.158 0.00 0.00 0.00 4.61
950 956 1.612146 TGCTTCTCCGATCCACCCA 60.612 57.895 0.00 0.00 0.00 4.51
951 957 1.153349 GCTTCTCCGATCCACCCAC 60.153 63.158 0.00 0.00 0.00 4.61
952 958 1.522569 CTTCTCCGATCCACCCACC 59.477 63.158 0.00 0.00 0.00 4.61
953 959 1.229368 TTCTCCGATCCACCCACCA 60.229 57.895 0.00 0.00 0.00 4.17
954 960 1.264749 TTCTCCGATCCACCCACCAG 61.265 60.000 0.00 0.00 0.00 4.00
955 961 1.685765 CTCCGATCCACCCACCAGA 60.686 63.158 0.00 0.00 0.00 3.86
956 962 1.961180 CTCCGATCCACCCACCAGAC 61.961 65.000 0.00 0.00 0.00 3.51
957 963 2.290287 CCGATCCACCCACCAGACA 61.290 63.158 0.00 0.00 0.00 3.41
958 964 1.219124 CGATCCACCCACCAGACAG 59.781 63.158 0.00 0.00 0.00 3.51
959 965 1.257750 CGATCCACCCACCAGACAGA 61.258 60.000 0.00 0.00 0.00 3.41
960 966 0.539051 GATCCACCCACCAGACAGAG 59.461 60.000 0.00 0.00 0.00 3.35
961 967 0.911525 ATCCACCCACCAGACAGAGG 60.912 60.000 0.00 0.00 0.00 3.69
962 968 1.536418 CCACCCACCAGACAGAGGA 60.536 63.158 0.00 0.00 0.00 3.71
963 969 1.674057 CACCCACCAGACAGAGGAC 59.326 63.158 0.00 0.00 0.00 3.85
964 970 1.536662 ACCCACCAGACAGAGGACC 60.537 63.158 0.00 0.00 0.00 4.46
965 971 2.650116 CCCACCAGACAGAGGACCG 61.650 68.421 0.00 0.00 0.00 4.79
966 972 2.262915 CACCAGACAGAGGACCGC 59.737 66.667 0.00 0.00 0.00 5.68
967 973 2.997897 ACCAGACAGAGGACCGCC 60.998 66.667 0.00 0.00 0.00 6.13
968 974 4.135153 CCAGACAGAGGACCGCCG 62.135 72.222 0.00 0.00 39.96 6.46
969 975 3.374402 CAGACAGAGGACCGCCGT 61.374 66.667 0.00 0.00 39.96 5.68
970 976 3.063084 AGACAGAGGACCGCCGTC 61.063 66.667 3.53 3.53 39.96 4.79
983 989 4.609247 CCGTCCCTCGTCGCGATC 62.609 72.222 14.06 5.25 34.61 3.69
984 990 3.872728 CGTCCCTCGTCGCGATCA 61.873 66.667 14.06 0.00 34.61 2.92
985 991 2.488355 GTCCCTCGTCGCGATCAA 59.512 61.111 14.06 0.00 34.61 2.57
986 992 1.153901 GTCCCTCGTCGCGATCAAA 60.154 57.895 14.06 0.00 34.61 2.69
987 993 0.527817 GTCCCTCGTCGCGATCAAAT 60.528 55.000 14.06 0.00 34.61 2.32
988 994 0.248907 TCCCTCGTCGCGATCAAATC 60.249 55.000 14.06 0.00 34.61 2.17
995 1001 3.706140 GCGATCAAATCCGCGAGT 58.294 55.556 8.23 0.00 42.02 4.18
1003 1009 2.094234 TCAAATCCGCGAGTGAAGATGA 60.094 45.455 8.23 0.25 0.00 2.92
1004 1010 1.927895 AATCCGCGAGTGAAGATGAC 58.072 50.000 8.23 0.00 0.00 3.06
1006 1012 0.109272 TCCGCGAGTGAAGATGACAC 60.109 55.000 8.23 0.00 38.38 3.67
1007 1013 1.078759 CCGCGAGTGAAGATGACACC 61.079 60.000 8.23 0.00 38.82 4.16
1010 1016 1.078759 CGAGTGAAGATGACACCCGC 61.079 60.000 0.00 0.00 38.82 6.13
1030 1036 2.160205 CTCACCTCTTCTCGTACACCA 58.840 52.381 0.00 0.00 0.00 4.17
1061 1067 1.038130 CCAGGTCGATCGTCCTTCCT 61.038 60.000 27.90 18.12 31.56 3.36
1070 1076 3.082055 GTCCTTCCTCCCCGTCCC 61.082 72.222 0.00 0.00 0.00 4.46
1105 1114 4.753662 CTCCGACCCCTCCCGTCA 62.754 72.222 0.00 0.00 0.00 4.35
1174 1183 4.980805 GCGGGGTGCTGACGTTGA 62.981 66.667 0.00 0.00 41.73 3.18
1175 1184 3.041940 CGGGGTGCTGACGTTGAC 61.042 66.667 0.00 0.00 0.00 3.18
1176 1185 2.668550 GGGGTGCTGACGTTGACC 60.669 66.667 0.00 0.00 0.00 4.02
1177 1186 2.426023 GGGTGCTGACGTTGACCT 59.574 61.111 0.00 0.00 0.00 3.85
1178 1187 1.961277 GGGTGCTGACGTTGACCTG 60.961 63.158 0.00 0.00 0.00 4.00
1180 1189 1.222115 GGTGCTGACGTTGACCTGTC 61.222 60.000 0.00 0.00 35.67 3.51
1181 1190 1.299850 TGCTGACGTTGACCTGTCG 60.300 57.895 0.00 0.00 37.94 4.35
1300 1313 4.429212 CACCATCGCCGTCCACGA 62.429 66.667 0.00 0.00 44.75 4.35
1330 1343 4.265073 GTCAAGCTTTACATCTGGGACAT 58.735 43.478 5.90 0.00 38.20 3.06
1335 1348 2.418368 TTACATCTGGGACATGGTGC 57.582 50.000 0.00 0.00 38.20 5.01
1337 1350 1.078214 CATCTGGGACATGGTGCGT 60.078 57.895 0.00 0.00 38.20 5.24
1339 1352 3.434319 CTGGGACATGGTGCGTGC 61.434 66.667 0.00 0.00 38.20 5.34
1342 1355 2.560119 GGGACATGGTGCGTGCAAA 61.560 57.895 0.00 0.00 0.00 3.68
1343 1356 1.371635 GGACATGGTGCGTGCAAAC 60.372 57.895 0.00 0.00 0.00 2.93
1344 1357 1.654220 GACATGGTGCGTGCAAACT 59.346 52.632 0.00 0.00 0.00 2.66
1345 1358 0.030638 GACATGGTGCGTGCAAACTT 59.969 50.000 0.00 0.00 0.00 2.66
1346 1359 1.265635 GACATGGTGCGTGCAAACTTA 59.734 47.619 0.00 0.00 0.00 2.24
1347 1360 1.885887 ACATGGTGCGTGCAAACTTAT 59.114 42.857 0.00 0.00 0.00 1.73
1348 1361 2.295909 ACATGGTGCGTGCAAACTTATT 59.704 40.909 0.00 0.00 0.00 1.40
1349 1362 3.243704 ACATGGTGCGTGCAAACTTATTT 60.244 39.130 0.00 0.00 0.00 1.40
1350 1363 4.022762 ACATGGTGCGTGCAAACTTATTTA 60.023 37.500 0.00 0.00 0.00 1.40
1351 1364 3.891324 TGGTGCGTGCAAACTTATTTAC 58.109 40.909 0.00 0.00 0.00 2.01
1352 1365 3.239254 GGTGCGTGCAAACTTATTTACC 58.761 45.455 0.00 0.00 0.00 2.85
1353 1366 3.239254 GTGCGTGCAAACTTATTTACCC 58.761 45.455 0.00 0.00 0.00 3.69
1354 1367 3.057806 GTGCGTGCAAACTTATTTACCCT 60.058 43.478 0.00 0.00 0.00 4.34
1355 1368 3.570550 TGCGTGCAAACTTATTTACCCTT 59.429 39.130 0.00 0.00 0.00 3.95
1356 1369 4.163552 GCGTGCAAACTTATTTACCCTTC 58.836 43.478 0.00 0.00 0.00 3.46
1357 1370 4.729595 CGTGCAAACTTATTTACCCTTCC 58.270 43.478 0.00 0.00 0.00 3.46
1358 1371 4.457949 CGTGCAAACTTATTTACCCTTCCT 59.542 41.667 0.00 0.00 0.00 3.36
1359 1372 5.048294 CGTGCAAACTTATTTACCCTTCCTT 60.048 40.000 0.00 0.00 0.00 3.36
1360 1373 6.387465 GTGCAAACTTATTTACCCTTCCTTC 58.613 40.000 0.00 0.00 0.00 3.46
1361 1374 5.479027 TGCAAACTTATTTACCCTTCCTTCC 59.521 40.000 0.00 0.00 0.00 3.46
1362 1375 5.715279 GCAAACTTATTTACCCTTCCTTCCT 59.285 40.000 0.00 0.00 0.00 3.36
1363 1376 6.210784 GCAAACTTATTTACCCTTCCTTCCTT 59.789 38.462 0.00 0.00 0.00 3.36
1364 1377 7.577046 GCAAACTTATTTACCCTTCCTTCCTTC 60.577 40.741 0.00 0.00 0.00 3.46
1365 1378 6.075949 ACTTATTTACCCTTCCTTCCTTCC 57.924 41.667 0.00 0.00 0.00 3.46
1366 1379 5.796399 ACTTATTTACCCTTCCTTCCTTCCT 59.204 40.000 0.00 0.00 0.00 3.36
1367 1380 6.277283 ACTTATTTACCCTTCCTTCCTTCCTT 59.723 38.462 0.00 0.00 0.00 3.36
1368 1381 4.382386 TTTACCCTTCCTTCCTTCCTTG 57.618 45.455 0.00 0.00 0.00 3.61
1369 1382 1.834540 ACCCTTCCTTCCTTCCTTGT 58.165 50.000 0.00 0.00 0.00 3.16
1370 1383 1.705745 ACCCTTCCTTCCTTCCTTGTC 59.294 52.381 0.00 0.00 0.00 3.18
1371 1384 1.705186 CCCTTCCTTCCTTCCTTGTCA 59.295 52.381 0.00 0.00 0.00 3.58
1372 1385 2.108250 CCCTTCCTTCCTTCCTTGTCAA 59.892 50.000 0.00 0.00 0.00 3.18
1373 1386 3.436470 CCCTTCCTTCCTTCCTTGTCAAA 60.436 47.826 0.00 0.00 0.00 2.69
1374 1387 4.215109 CCTTCCTTCCTTCCTTGTCAAAA 58.785 43.478 0.00 0.00 0.00 2.44
1375 1388 4.835056 CCTTCCTTCCTTCCTTGTCAAAAT 59.165 41.667 0.00 0.00 0.00 1.82
1376 1389 5.047731 CCTTCCTTCCTTCCTTGTCAAAATC 60.048 44.000 0.00 0.00 0.00 2.17
1377 1390 4.407365 TCCTTCCTTCCTTGTCAAAATCC 58.593 43.478 0.00 0.00 0.00 3.01
1378 1391 3.191371 CCTTCCTTCCTTGTCAAAATCCG 59.809 47.826 0.00 0.00 0.00 4.18
1379 1392 3.780804 TCCTTCCTTGTCAAAATCCGA 57.219 42.857 0.00 0.00 0.00 4.55
1380 1393 3.674997 TCCTTCCTTGTCAAAATCCGAG 58.325 45.455 0.00 0.00 0.00 4.63
1381 1394 3.326588 TCCTTCCTTGTCAAAATCCGAGA 59.673 43.478 0.00 0.00 0.00 4.04
1382 1395 3.686726 CCTTCCTTGTCAAAATCCGAGAG 59.313 47.826 0.00 0.00 0.00 3.20
1407 1420 3.902881 CAGAGATTTCTGCCCTAGTGT 57.097 47.619 0.00 0.00 43.98 3.55
1411 1424 2.906389 AGATTTCTGCCCTAGTGTCACA 59.094 45.455 5.62 0.00 0.00 3.58
1412 1425 3.327757 AGATTTCTGCCCTAGTGTCACAA 59.672 43.478 5.62 0.00 0.00 3.33
1419 1432 3.264193 TGCCCTAGTGTCACAATTGATCT 59.736 43.478 13.59 5.35 33.11 2.75
1420 1433 3.624861 GCCCTAGTGTCACAATTGATCTG 59.375 47.826 13.59 0.00 33.11 2.90
1422 1435 5.626809 GCCCTAGTGTCACAATTGATCTGTA 60.627 44.000 13.59 0.00 33.11 2.74
1423 1436 6.586344 CCCTAGTGTCACAATTGATCTGTAT 58.414 40.000 13.59 0.00 33.11 2.29
1424 1437 7.050377 CCCTAGTGTCACAATTGATCTGTATT 58.950 38.462 13.59 0.00 33.11 1.89
1429 1442 9.283768 AGTGTCACAATTGATCTGTATTTTACA 57.716 29.630 13.59 0.00 33.11 2.41
1430 1443 9.329913 GTGTCACAATTGATCTGTATTTTACAC 57.670 33.333 13.59 5.93 33.11 2.90
1431 1444 8.511321 TGTCACAATTGATCTGTATTTTACACC 58.489 33.333 13.59 0.00 33.11 4.16
1432 1445 8.511321 GTCACAATTGATCTGTATTTTACACCA 58.489 33.333 13.59 0.00 33.11 4.17
1433 1446 8.511321 TCACAATTGATCTGTATTTTACACCAC 58.489 33.333 13.59 0.00 34.46 4.16
1434 1447 8.296000 CACAATTGATCTGTATTTTACACCACA 58.704 33.333 13.59 0.00 34.46 4.17
1435 1448 8.296713 ACAATTGATCTGTATTTTACACCACAC 58.703 33.333 13.59 0.00 34.46 3.82
1436 1449 6.811253 TTGATCTGTATTTTACACCACACC 57.189 37.500 0.00 0.00 34.46 4.16
1438 1451 5.703592 TGATCTGTATTTTACACCACACCAC 59.296 40.000 0.00 0.00 34.46 4.16
1440 1453 5.060506 TCTGTATTTTACACCACACCACAG 58.939 41.667 0.00 0.00 34.46 3.66
1442 1455 5.926663 TGTATTTTACACCACACCACAGTA 58.073 37.500 0.00 0.00 32.89 2.74
1443 1456 6.354938 TGTATTTTACACCACACCACAGTAA 58.645 36.000 0.00 0.00 32.89 2.24
1445 1458 6.969993 ATTTTACACCACACCACAGTAAAT 57.030 33.333 0.00 0.00 35.39 1.40
1446 1459 9.001542 GTATTTTACACCACACCACAGTAAATA 57.998 33.333 0.00 0.00 35.39 1.40
1447 1460 8.644374 ATTTTACACCACACCACAGTAAATAT 57.356 30.769 0.00 0.00 35.39 1.28
1526 1543 4.813027 AGCACAATAAGGTGATGCTTTTG 58.187 39.130 0.00 0.00 44.01 2.44
1542 1559 3.365565 GCTTTTGCATGCCTTTTTCATGG 60.366 43.478 16.68 0.00 46.58 3.66
1543 1560 3.488778 TTTGCATGCCTTTTTCATGGT 57.511 38.095 16.68 0.00 41.08 3.55
1544 1561 2.459060 TGCATGCCTTTTTCATGGTG 57.541 45.000 16.68 0.00 41.08 4.17
1545 1562 1.693062 TGCATGCCTTTTTCATGGTGT 59.307 42.857 16.68 0.00 41.08 4.16
1547 1564 2.738314 GCATGCCTTTTTCATGGTGTTC 59.262 45.455 6.36 0.00 41.08 3.18
1549 1566 3.731652 TGCCTTTTTCATGGTGTTCTG 57.268 42.857 0.00 0.00 0.00 3.02
1553 1570 4.783242 CCTTTTTCATGGTGTTCTGTACG 58.217 43.478 0.00 0.00 0.00 3.67
1554 1571 4.274950 CCTTTTTCATGGTGTTCTGTACGT 59.725 41.667 0.00 0.00 0.00 3.57
1555 1572 5.467399 CCTTTTTCATGGTGTTCTGTACGTA 59.533 40.000 0.00 0.00 0.00 3.57
1576 1593 5.051907 CGTAGTACCATACGTGCTGAATTTC 60.052 44.000 0.00 0.00 42.73 2.17
1577 1594 4.827692 AGTACCATACGTGCTGAATTTCA 58.172 39.130 0.00 0.00 35.88 2.69
1579 1596 4.621068 ACCATACGTGCTGAATTTCATG 57.379 40.909 0.00 0.00 0.00 3.07
1582 1599 5.645929 ACCATACGTGCTGAATTTCATGTTA 59.354 36.000 0.00 0.00 34.59 2.41
5057 10778 3.305398 ACTTACTTTGCCAGTCTCTCG 57.695 47.619 0.00 0.00 36.88 4.04
5064 10785 2.440539 TGCCAGTCTCTCGAAACTTC 57.559 50.000 0.00 0.00 0.00 3.01
5081 10802 0.038343 TTCGCAATCTTTGGCAAGCC 60.038 50.000 3.61 3.61 0.00 4.35
5089 10810 1.043022 CTTTGGCAAGCCTTGGAGTT 58.957 50.000 12.96 0.00 36.94 3.01
5099 10820 4.640771 AGCCTTGGAGTTGTCAAATCTA 57.359 40.909 12.40 4.00 0.00 1.98
5158 10879 5.126067 CAAAATGGGTCGATGGAAGTAGAT 58.874 41.667 0.00 0.00 0.00 1.98
5159 10880 6.126883 ACAAAATGGGTCGATGGAAGTAGATA 60.127 38.462 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 138 6.543736 GGGAAATTAAGAAACTAGACTTGCG 58.456 40.000 0.00 0.00 0.00 4.85
222 224 5.048782 TGCCATGATGTTTACACTGAAGTTC 60.049 40.000 0.00 0.00 0.00 3.01
451 457 8.714179 CCACACGTTTCTAATGTAAACAGATTA 58.286 33.333 0.00 0.00 36.78 1.75
485 491 0.813610 CACACGTGTGGCAGGAAAGA 60.814 55.000 35.65 0.00 42.10 2.52
532 538 9.757227 ACACAGAAATTTTTCGAAATAAATGGA 57.243 25.926 12.12 0.00 41.92 3.41
539 545 9.273016 TCTCTAGACACAGAAATTTTTCGAAAT 57.727 29.630 12.12 0.00 41.92 2.17
540 546 8.657074 TCTCTAGACACAGAAATTTTTCGAAA 57.343 30.769 6.47 6.47 41.92 3.46
541 547 8.141909 TCTCTCTAGACACAGAAATTTTTCGAA 58.858 33.333 0.00 0.00 41.92 3.71
542 548 7.658261 TCTCTCTAGACACAGAAATTTTTCGA 58.342 34.615 0.00 0.00 41.92 3.71
543 549 7.875316 TCTCTCTAGACACAGAAATTTTTCG 57.125 36.000 0.00 0.00 41.92 3.46
570 576 5.479724 TGCCATCAAGTGATATGGTGAAAAA 59.520 36.000 0.00 0.00 43.87 1.94
571 577 5.015515 TGCCATCAAGTGATATGGTGAAAA 58.984 37.500 0.00 0.00 43.87 2.29
572 578 4.598022 TGCCATCAAGTGATATGGTGAAA 58.402 39.130 0.00 0.00 43.87 2.69
573 579 4.233632 TGCCATCAAGTGATATGGTGAA 57.766 40.909 0.00 0.00 43.87 3.18
574 580 3.929955 TGCCATCAAGTGATATGGTGA 57.070 42.857 0.00 0.00 43.87 4.02
575 581 5.524971 AAATGCCATCAAGTGATATGGTG 57.475 39.130 0.00 0.00 43.87 4.17
576 582 6.549433 AAAAATGCCATCAAGTGATATGGT 57.451 33.333 0.00 0.00 43.87 3.55
605 611 7.432838 GCCATCACTACAAAAGTTTACGAAAAA 59.567 33.333 0.00 0.00 35.76 1.94
606 612 6.913673 GCCATCACTACAAAAGTTTACGAAAA 59.086 34.615 0.00 0.00 35.76 2.29
607 613 6.038382 TGCCATCACTACAAAAGTTTACGAAA 59.962 34.615 0.00 0.00 35.76 3.46
608 614 5.527951 TGCCATCACTACAAAAGTTTACGAA 59.472 36.000 0.00 0.00 35.76 3.85
609 615 5.057819 TGCCATCACTACAAAAGTTTACGA 58.942 37.500 0.00 0.00 35.76 3.43
610 616 5.351233 TGCCATCACTACAAAAGTTTACG 57.649 39.130 0.00 0.00 35.76 3.18
611 617 6.735130 AGTTGCCATCACTACAAAAGTTTAC 58.265 36.000 0.00 0.00 35.76 2.01
612 618 6.952773 AGTTGCCATCACTACAAAAGTTTA 57.047 33.333 0.00 0.00 35.76 2.01
613 619 5.852282 AGTTGCCATCACTACAAAAGTTT 57.148 34.783 0.00 0.00 35.76 2.66
614 620 5.852282 AAGTTGCCATCACTACAAAAGTT 57.148 34.783 0.00 0.00 35.76 2.66
615 621 5.852282 AAAGTTGCCATCACTACAAAAGT 57.148 34.783 0.00 0.00 39.81 2.66
616 622 5.399301 CGAAAAGTTGCCATCACTACAAAAG 59.601 40.000 0.00 0.00 0.00 2.27
617 623 5.163602 ACGAAAAGTTGCCATCACTACAAAA 60.164 36.000 0.00 0.00 0.00 2.44
618 624 4.336993 ACGAAAAGTTGCCATCACTACAAA 59.663 37.500 0.00 0.00 0.00 2.83
619 625 3.880490 ACGAAAAGTTGCCATCACTACAA 59.120 39.130 0.00 0.00 0.00 2.41
620 626 3.472652 ACGAAAAGTTGCCATCACTACA 58.527 40.909 0.00 0.00 0.00 2.74
621 627 4.689345 AGTACGAAAAGTTGCCATCACTAC 59.311 41.667 0.00 0.00 0.00 2.73
622 628 4.688879 CAGTACGAAAAGTTGCCATCACTA 59.311 41.667 0.00 0.00 0.00 2.74
623 629 3.498397 CAGTACGAAAAGTTGCCATCACT 59.502 43.478 0.00 0.00 0.00 3.41
624 630 3.250040 ACAGTACGAAAAGTTGCCATCAC 59.750 43.478 0.00 0.00 0.00 3.06
625 631 3.472652 ACAGTACGAAAAGTTGCCATCA 58.527 40.909 0.00 0.00 0.00 3.07
626 632 4.927425 TCTACAGTACGAAAAGTTGCCATC 59.073 41.667 0.00 0.00 0.00 3.51
627 633 4.890088 TCTACAGTACGAAAAGTTGCCAT 58.110 39.130 0.00 0.00 0.00 4.40
628 634 4.038282 TCTCTACAGTACGAAAAGTTGCCA 59.962 41.667 0.00 0.00 0.00 4.92
629 635 4.553323 TCTCTACAGTACGAAAAGTTGCC 58.447 43.478 0.00 0.00 0.00 4.52
630 636 5.444745 GCATCTCTACAGTACGAAAAGTTGC 60.445 44.000 0.00 0.00 0.00 4.17
631 637 5.633601 TGCATCTCTACAGTACGAAAAGTTG 59.366 40.000 0.00 0.00 0.00 3.16
632 638 5.779922 TGCATCTCTACAGTACGAAAAGTT 58.220 37.500 0.00 0.00 0.00 2.66
633 639 5.386958 TGCATCTCTACAGTACGAAAAGT 57.613 39.130 0.00 0.00 0.00 2.66
634 640 5.807520 ACATGCATCTCTACAGTACGAAAAG 59.192 40.000 0.00 0.00 0.00 2.27
635 641 5.720202 ACATGCATCTCTACAGTACGAAAA 58.280 37.500 0.00 0.00 0.00 2.29
636 642 5.324784 ACATGCATCTCTACAGTACGAAA 57.675 39.130 0.00 0.00 0.00 3.46
637 643 4.983671 ACATGCATCTCTACAGTACGAA 57.016 40.909 0.00 0.00 0.00 3.85
638 644 4.672409 CAACATGCATCTCTACAGTACGA 58.328 43.478 0.00 0.00 0.00 3.43
639 645 3.243877 GCAACATGCATCTCTACAGTACG 59.756 47.826 0.00 0.00 44.26 3.67
640 646 4.785669 GCAACATGCATCTCTACAGTAC 57.214 45.455 0.00 0.00 44.26 2.73
657 663 4.590850 AAAAGGAAGAAGTCATGGCAAC 57.409 40.909 0.00 0.00 0.00 4.17
689 695 9.383519 TGCCATGTTCAAGTTTATGTTTTAAAA 57.616 25.926 0.00 0.00 0.00 1.52
690 696 8.948631 TGCCATGTTCAAGTTTATGTTTTAAA 57.051 26.923 0.00 0.00 0.00 1.52
691 697 8.948631 TTGCCATGTTCAAGTTTATGTTTTAA 57.051 26.923 0.00 0.00 0.00 1.52
692 698 9.553064 AATTGCCATGTTCAAGTTTATGTTTTA 57.447 25.926 0.00 0.00 0.00 1.52
693 699 8.449251 AATTGCCATGTTCAAGTTTATGTTTT 57.551 26.923 0.00 0.00 0.00 2.43
694 700 8.449251 AAATTGCCATGTTCAAGTTTATGTTT 57.551 26.923 5.24 0.00 28.86 2.83
695 701 7.933033 AGAAATTGCCATGTTCAAGTTTATGTT 59.067 29.630 10.52 0.00 32.77 2.71
696 702 7.444299 AGAAATTGCCATGTTCAAGTTTATGT 58.556 30.769 10.52 0.00 32.77 2.29
697 703 7.894376 AGAAATTGCCATGTTCAAGTTTATG 57.106 32.000 10.52 0.00 32.77 1.90
698 704 8.907222 AAAGAAATTGCCATGTTCAAGTTTAT 57.093 26.923 10.52 3.17 32.77 1.40
699 705 7.984050 TGAAAGAAATTGCCATGTTCAAGTTTA 59.016 29.630 10.52 0.00 32.77 2.01
700 706 6.822676 TGAAAGAAATTGCCATGTTCAAGTTT 59.177 30.769 10.52 7.85 32.77 2.66
701 707 6.347696 TGAAAGAAATTGCCATGTTCAAGTT 58.652 32.000 9.41 9.41 34.91 2.66
702 708 5.916318 TGAAAGAAATTGCCATGTTCAAGT 58.084 33.333 0.00 0.00 0.00 3.16
703 709 7.171848 TCAATGAAAGAAATTGCCATGTTCAAG 59.828 33.333 0.00 0.00 35.43 3.02
704 710 6.990939 TCAATGAAAGAAATTGCCATGTTCAA 59.009 30.769 0.00 0.00 35.43 2.69
705 711 6.522946 TCAATGAAAGAAATTGCCATGTTCA 58.477 32.000 0.00 0.00 35.43 3.18
706 712 7.424227 TTCAATGAAAGAAATTGCCATGTTC 57.576 32.000 0.00 0.00 35.43 3.18
707 713 7.094549 CCATTCAATGAAAGAAATTGCCATGTT 60.095 33.333 0.00 0.00 35.43 2.71
708 714 6.373216 CCATTCAATGAAAGAAATTGCCATGT 59.627 34.615 0.00 0.00 35.43 3.21
709 715 6.676943 GCCATTCAATGAAAGAAATTGCCATG 60.677 38.462 0.00 0.00 35.43 3.66
710 716 5.355910 GCCATTCAATGAAAGAAATTGCCAT 59.644 36.000 0.00 0.00 35.43 4.40
711 717 4.696402 GCCATTCAATGAAAGAAATTGCCA 59.304 37.500 0.00 0.00 35.43 4.92
712 718 4.696402 TGCCATTCAATGAAAGAAATTGCC 59.304 37.500 0.00 0.00 35.43 4.52
713 719 5.866335 TGCCATTCAATGAAAGAAATTGC 57.134 34.783 0.00 0.00 35.43 3.56
714 720 8.347035 ACTTTTGCCATTCAATGAAAGAAATTG 58.653 29.630 14.11 0.00 36.54 2.32
715 721 8.454570 ACTTTTGCCATTCAATGAAAGAAATT 57.545 26.923 14.11 0.00 34.12 1.82
716 722 7.173735 GGACTTTTGCCATTCAATGAAAGAAAT 59.826 33.333 14.11 0.00 34.12 2.17
717 723 6.482973 GGACTTTTGCCATTCAATGAAAGAAA 59.517 34.615 14.11 0.00 34.12 2.52
718 724 5.990996 GGACTTTTGCCATTCAATGAAAGAA 59.009 36.000 14.11 0.00 34.12 2.52
719 725 5.070180 TGGACTTTTGCCATTCAATGAAAGA 59.930 36.000 14.11 0.00 34.12 2.52
720 726 5.299148 TGGACTTTTGCCATTCAATGAAAG 58.701 37.500 0.00 3.88 34.12 2.62
721 727 5.287674 TGGACTTTTGCCATTCAATGAAA 57.712 34.783 0.00 0.00 34.12 2.69
722 728 4.952071 TGGACTTTTGCCATTCAATGAA 57.048 36.364 0.00 0.00 34.12 2.57
723 729 4.322877 CCATGGACTTTTGCCATTCAATGA 60.323 41.667 5.56 0.00 43.42 2.57
724 730 3.936453 CCATGGACTTTTGCCATTCAATG 59.064 43.478 5.56 0.00 43.42 2.82
725 731 3.620472 GCCATGGACTTTTGCCATTCAAT 60.620 43.478 18.40 0.00 43.42 2.57
726 732 2.289569 GCCATGGACTTTTGCCATTCAA 60.290 45.455 18.40 0.00 43.42 2.69
727 733 1.275856 GCCATGGACTTTTGCCATTCA 59.724 47.619 18.40 0.00 43.42 2.57
728 734 1.275856 TGCCATGGACTTTTGCCATTC 59.724 47.619 18.40 0.00 43.42 2.67
729 735 1.350071 TGCCATGGACTTTTGCCATT 58.650 45.000 18.40 0.00 43.42 3.16
730 736 1.350071 TTGCCATGGACTTTTGCCAT 58.650 45.000 18.40 0.00 46.76 4.40
731 737 1.350071 ATTGCCATGGACTTTTGCCA 58.650 45.000 18.40 0.00 40.24 4.92
732 738 2.477845 AATTGCCATGGACTTTTGCC 57.522 45.000 18.40 0.00 0.00 4.52
733 739 3.565063 ACAAAATTGCCATGGACTTTTGC 59.435 39.130 28.49 11.89 39.32 3.68
734 740 4.084433 CGACAAAATTGCCATGGACTTTTG 60.084 41.667 27.71 27.71 40.73 2.44
735 741 4.057432 CGACAAAATTGCCATGGACTTTT 58.943 39.130 18.40 13.91 0.00 2.27
736 742 3.069443 ACGACAAAATTGCCATGGACTTT 59.931 39.130 18.40 8.33 0.00 2.66
737 743 2.627699 ACGACAAAATTGCCATGGACTT 59.372 40.909 18.40 1.58 0.00 3.01
738 744 2.030007 CACGACAAAATTGCCATGGACT 60.030 45.455 18.40 0.00 0.00 3.85
739 745 2.327568 CACGACAAAATTGCCATGGAC 58.672 47.619 18.40 7.64 0.00 4.02
740 746 1.336702 GCACGACAAAATTGCCATGGA 60.337 47.619 18.40 0.00 0.00 3.41
741 747 1.070038 GCACGACAAAATTGCCATGG 58.930 50.000 7.63 7.63 0.00 3.66
742 748 1.780806 TGCACGACAAAATTGCCATG 58.219 45.000 0.00 0.00 35.26 3.66
743 749 2.522836 TTGCACGACAAAATTGCCAT 57.477 40.000 0.00 0.00 34.56 4.40
744 750 2.299993 TTTGCACGACAAAATTGCCA 57.700 40.000 6.01 0.00 45.22 4.92
750 756 7.891732 GACATTGGTCCTTTGCACGACAAAA 62.892 44.000 9.33 4.60 40.48 2.44
751 757 1.464734 TTGGTCCTTTGCACGACAAA 58.535 45.000 9.33 7.85 46.01 2.83
752 758 1.336440 CATTGGTCCTTTGCACGACAA 59.664 47.619 9.33 0.00 36.13 3.18
753 759 0.950836 CATTGGTCCTTTGCACGACA 59.049 50.000 9.33 0.00 0.00 4.35
754 760 0.951558 ACATTGGTCCTTTGCACGAC 59.048 50.000 0.00 0.00 0.00 4.34
755 761 1.234821 GACATTGGTCCTTTGCACGA 58.765 50.000 0.00 0.00 38.12 4.35
756 762 0.110238 CGACATTGGTCCTTTGCACG 60.110 55.000 0.00 0.00 41.13 5.34
757 763 1.197721 CTCGACATTGGTCCTTTGCAC 59.802 52.381 0.00 0.00 41.13 4.57
758 764 1.071542 TCTCGACATTGGTCCTTTGCA 59.928 47.619 0.00 0.00 41.13 4.08
759 765 1.808411 TCTCGACATTGGTCCTTTGC 58.192 50.000 0.00 0.00 41.13 3.68
760 766 2.157668 CGTTCTCGACATTGGTCCTTTG 59.842 50.000 0.00 0.00 41.13 2.77
761 767 2.036733 TCGTTCTCGACATTGGTCCTTT 59.963 45.455 0.00 0.00 41.13 3.11
762 768 1.616865 TCGTTCTCGACATTGGTCCTT 59.383 47.619 0.00 0.00 41.13 3.36
763 769 1.254026 TCGTTCTCGACATTGGTCCT 58.746 50.000 0.00 0.00 41.13 3.85
764 770 1.993370 CTTCGTTCTCGACATTGGTCC 59.007 52.381 0.00 0.00 46.03 4.46
765 771 1.390463 GCTTCGTTCTCGACATTGGTC 59.610 52.381 0.00 0.00 46.03 4.02
766 772 1.429463 GCTTCGTTCTCGACATTGGT 58.571 50.000 0.00 0.00 46.03 3.67
767 773 0.366871 CGCTTCGTTCTCGACATTGG 59.633 55.000 0.00 0.00 46.03 3.16
768 774 1.060713 ACGCTTCGTTCTCGACATTG 58.939 50.000 0.00 0.00 46.03 2.82
769 775 3.491581 ACGCTTCGTTCTCGACATT 57.508 47.368 0.00 0.00 46.03 2.71
781 787 2.695646 GCATCGACCGAACGCTTC 59.304 61.111 9.11 0.00 0.00 3.86
782 788 2.813908 GGCATCGACCGAACGCTT 60.814 61.111 14.00 0.00 0.00 4.68
783 789 4.814294 GGGCATCGACCGAACGCT 62.814 66.667 14.00 0.00 0.00 5.07
785 791 4.143333 AGGGGCATCGACCGAACG 62.143 66.667 0.00 0.00 0.00 3.95
786 792 2.202892 GAGGGGCATCGACCGAAC 60.203 66.667 0.00 0.00 0.00 3.95
787 793 3.467226 GGAGGGGCATCGACCGAA 61.467 66.667 0.00 0.00 0.00 4.30
791 797 4.222847 GACGGGAGGGGCATCGAC 62.223 72.222 0.00 0.00 0.00 4.20
815 821 4.699522 ACCCAGGCCGAACGCTTC 62.700 66.667 0.00 0.00 37.74 3.86
830 836 2.047179 GTTCGGTCTGGGAGCACC 60.047 66.667 0.00 0.00 40.81 5.01
831 837 2.432628 CGTTCGGTCTGGGAGCAC 60.433 66.667 0.00 0.00 0.00 4.40
832 838 3.691342 CCGTTCGGTCTGGGAGCA 61.691 66.667 2.82 0.00 0.00 4.26
833 839 3.692406 ACCGTTCGGTCTGGGAGC 61.692 66.667 11.27 0.00 32.13 4.70
843 849 0.636733 CGATAACAACCGACCGTTCG 59.363 55.000 0.00 0.00 45.44 3.95
844 850 1.981254 TCGATAACAACCGACCGTTC 58.019 50.000 0.00 0.00 29.93 3.95
845 851 2.264813 CATCGATAACAACCGACCGTT 58.735 47.619 0.00 0.00 37.64 4.44
846 852 1.203052 ACATCGATAACAACCGACCGT 59.797 47.619 0.00 0.00 37.64 4.83
847 853 1.850441 GACATCGATAACAACCGACCG 59.150 52.381 0.00 0.00 37.64 4.79
848 854 2.199236 GGACATCGATAACAACCGACC 58.801 52.381 0.00 0.00 37.64 4.79
849 855 2.883574 TGGACATCGATAACAACCGAC 58.116 47.619 0.00 0.00 37.64 4.79
850 856 3.596310 TTGGACATCGATAACAACCGA 57.404 42.857 0.00 0.00 39.25 4.69
851 857 6.539649 AATATTGGACATCGATAACAACCG 57.460 37.500 0.00 0.00 0.00 4.44
852 858 9.233232 GAAAAATATTGGACATCGATAACAACC 57.767 33.333 0.00 0.00 0.00 3.77
853 859 9.233232 GGAAAAATATTGGACATCGATAACAAC 57.767 33.333 0.00 0.00 0.00 3.32
854 860 8.410141 GGGAAAAATATTGGACATCGATAACAA 58.590 33.333 0.00 4.32 0.00 2.83
855 861 7.558081 TGGGAAAAATATTGGACATCGATAACA 59.442 33.333 0.00 0.00 0.00 2.41
856 862 7.860872 GTGGGAAAAATATTGGACATCGATAAC 59.139 37.037 0.00 0.00 0.00 1.89
857 863 7.254966 CGTGGGAAAAATATTGGACATCGATAA 60.255 37.037 0.00 0.00 0.00 1.75
858 864 6.203915 CGTGGGAAAAATATTGGACATCGATA 59.796 38.462 0.00 0.00 0.00 2.92
859 865 5.008613 CGTGGGAAAAATATTGGACATCGAT 59.991 40.000 0.00 0.00 0.00 3.59
860 866 4.334203 CGTGGGAAAAATATTGGACATCGA 59.666 41.667 0.00 0.00 0.00 3.59
861 867 4.597079 CGTGGGAAAAATATTGGACATCG 58.403 43.478 0.00 0.00 0.00 3.84
862 868 4.359706 GCGTGGGAAAAATATTGGACATC 58.640 43.478 0.00 0.00 0.00 3.06
863 869 3.132111 GGCGTGGGAAAAATATTGGACAT 59.868 43.478 0.00 0.00 0.00 3.06
864 870 2.494073 GGCGTGGGAAAAATATTGGACA 59.506 45.455 0.00 0.00 0.00 4.02
865 871 2.159156 GGGCGTGGGAAAAATATTGGAC 60.159 50.000 0.00 0.00 0.00 4.02
866 872 2.104170 GGGCGTGGGAAAAATATTGGA 58.896 47.619 0.00 0.00 0.00 3.53
867 873 2.107366 AGGGCGTGGGAAAAATATTGG 58.893 47.619 0.00 0.00 0.00 3.16
868 874 2.738321 GCAGGGCGTGGGAAAAATATTG 60.738 50.000 9.49 0.00 0.00 1.90
869 875 1.480545 GCAGGGCGTGGGAAAAATATT 59.519 47.619 9.49 0.00 0.00 1.28
870 876 1.111277 GCAGGGCGTGGGAAAAATAT 58.889 50.000 9.49 0.00 0.00 1.28
871 877 0.251386 TGCAGGGCGTGGGAAAAATA 60.251 50.000 9.49 0.00 0.00 1.40
872 878 0.904394 ATGCAGGGCGTGGGAAAAAT 60.904 50.000 9.49 0.00 0.00 1.82
873 879 1.531739 GATGCAGGGCGTGGGAAAAA 61.532 55.000 9.49 0.00 0.00 1.94
874 880 1.976474 GATGCAGGGCGTGGGAAAA 60.976 57.895 9.49 0.00 0.00 2.29
875 881 2.361104 GATGCAGGGCGTGGGAAA 60.361 61.111 9.49 0.00 0.00 3.13
876 882 4.424711 GGATGCAGGGCGTGGGAA 62.425 66.667 9.49 0.00 0.00 3.97
888 894 4.802051 TTGAGGGCAGCCGGATGC 62.802 66.667 35.96 35.96 45.74 3.91
889 895 2.825836 GTTGAGGGCAGCCGGATG 60.826 66.667 17.26 17.26 0.00 3.51
890 896 4.115199 GGTTGAGGGCAGCCGGAT 62.115 66.667 5.05 0.00 35.61 4.18
894 900 2.409870 CGATTGGTTGAGGGCAGCC 61.410 63.158 1.26 1.26 44.84 4.85
895 901 2.409870 CCGATTGGTTGAGGGCAGC 61.410 63.158 0.00 0.00 0.00 5.25
896 902 0.107017 ATCCGATTGGTTGAGGGCAG 60.107 55.000 0.00 0.00 36.30 4.85
897 903 0.107214 GATCCGATTGGTTGAGGGCA 60.107 55.000 0.00 0.00 36.30 5.36
898 904 0.107214 TGATCCGATTGGTTGAGGGC 60.107 55.000 0.00 0.00 36.30 5.19
899 905 2.017049 GTTGATCCGATTGGTTGAGGG 58.983 52.381 0.00 0.00 36.30 4.30
900 906 2.939103 GAGTTGATCCGATTGGTTGAGG 59.061 50.000 0.00 0.00 36.30 3.86
901 907 3.866651 AGAGTTGATCCGATTGGTTGAG 58.133 45.455 0.00 0.00 36.30 3.02
902 908 3.676049 CGAGAGTTGATCCGATTGGTTGA 60.676 47.826 0.00 0.00 36.30 3.18
903 909 2.604914 CGAGAGTTGATCCGATTGGTTG 59.395 50.000 0.00 0.00 36.30 3.77
904 910 2.496070 TCGAGAGTTGATCCGATTGGTT 59.504 45.455 0.00 0.00 36.30 3.67
905 911 2.100197 TCGAGAGTTGATCCGATTGGT 58.900 47.619 0.00 0.00 36.30 3.67
906 912 2.871182 TCGAGAGTTGATCCGATTGG 57.129 50.000 0.00 0.00 0.00 3.16
907 913 3.738282 GGATTCGAGAGTTGATCCGATTG 59.262 47.826 0.00 0.00 32.87 2.67
908 914 3.243907 GGGATTCGAGAGTTGATCCGATT 60.244 47.826 5.66 0.00 37.17 3.34
909 915 2.297597 GGGATTCGAGAGTTGATCCGAT 59.702 50.000 5.66 0.00 37.17 4.18
910 916 1.681793 GGGATTCGAGAGTTGATCCGA 59.318 52.381 5.66 0.00 37.17 4.55
911 917 1.269831 GGGGATTCGAGAGTTGATCCG 60.270 57.143 5.66 0.00 37.17 4.18
912 918 2.043227 AGGGGATTCGAGAGTTGATCC 58.957 52.381 3.37 3.37 36.30 3.36
913 919 2.804933 GCAGGGGATTCGAGAGTTGATC 60.805 54.545 0.00 0.00 0.00 2.92
914 920 1.139853 GCAGGGGATTCGAGAGTTGAT 59.860 52.381 0.00 0.00 0.00 2.57
915 921 0.537188 GCAGGGGATTCGAGAGTTGA 59.463 55.000 0.00 0.00 0.00 3.18
916 922 0.539051 AGCAGGGGATTCGAGAGTTG 59.461 55.000 0.00 0.00 0.00 3.16
917 923 1.208293 GAAGCAGGGGATTCGAGAGTT 59.792 52.381 0.00 0.00 28.65 3.01
918 924 0.827368 GAAGCAGGGGATTCGAGAGT 59.173 55.000 0.00 0.00 28.65 3.24
919 925 1.068434 GAGAAGCAGGGGATTCGAGAG 59.932 57.143 0.00 0.00 44.01 3.20
920 926 1.115467 GAGAAGCAGGGGATTCGAGA 58.885 55.000 0.00 0.00 44.01 4.04
921 927 0.105778 GGAGAAGCAGGGGATTCGAG 59.894 60.000 0.00 0.00 44.01 4.04
922 928 1.676678 CGGAGAAGCAGGGGATTCGA 61.677 60.000 0.00 0.00 44.01 3.71
923 929 1.227380 CGGAGAAGCAGGGGATTCG 60.227 63.158 0.00 0.00 44.01 3.34
924 930 0.761802 ATCGGAGAAGCAGGGGATTC 59.238 55.000 0.00 0.00 43.58 2.52
925 931 0.761802 GATCGGAGAAGCAGGGGATT 59.238 55.000 0.00 0.00 43.58 3.01
926 932 1.124477 GGATCGGAGAAGCAGGGGAT 61.124 60.000 0.00 0.00 43.58 3.85
927 933 1.762460 GGATCGGAGAAGCAGGGGA 60.762 63.158 0.00 0.00 43.58 4.81
928 934 2.066393 TGGATCGGAGAAGCAGGGG 61.066 63.158 0.00 0.00 43.58 4.79
929 935 1.144936 GTGGATCGGAGAAGCAGGG 59.855 63.158 0.00 0.00 43.58 4.45
930 936 1.144936 GGTGGATCGGAGAAGCAGG 59.855 63.158 0.00 0.00 43.58 4.85
931 937 1.144936 GGGTGGATCGGAGAAGCAG 59.855 63.158 0.00 0.00 43.58 4.24
932 938 1.612146 TGGGTGGATCGGAGAAGCA 60.612 57.895 0.00 0.00 43.58 3.91
933 939 1.153349 GTGGGTGGATCGGAGAAGC 60.153 63.158 0.00 0.00 43.58 3.86
934 940 1.264749 TGGTGGGTGGATCGGAGAAG 61.265 60.000 0.00 0.00 43.58 2.85
935 941 1.229368 TGGTGGGTGGATCGGAGAA 60.229 57.895 0.00 0.00 43.58 2.87
936 942 1.685765 CTGGTGGGTGGATCGGAGA 60.686 63.158 0.00 0.00 45.75 3.71
937 943 1.685765 TCTGGTGGGTGGATCGGAG 60.686 63.158 0.00 0.00 0.00 4.63
938 944 1.987855 GTCTGGTGGGTGGATCGGA 60.988 63.158 0.00 0.00 0.00 4.55
939 945 2.244117 CTGTCTGGTGGGTGGATCGG 62.244 65.000 0.00 0.00 0.00 4.18
940 946 1.219124 CTGTCTGGTGGGTGGATCG 59.781 63.158 0.00 0.00 0.00 3.69
941 947 0.539051 CTCTGTCTGGTGGGTGGATC 59.461 60.000 0.00 0.00 0.00 3.36
942 948 0.911525 CCTCTGTCTGGTGGGTGGAT 60.912 60.000 0.00 0.00 0.00 3.41
943 949 1.536418 CCTCTGTCTGGTGGGTGGA 60.536 63.158 0.00 0.00 0.00 4.02
944 950 1.536418 TCCTCTGTCTGGTGGGTGG 60.536 63.158 0.00 0.00 0.00 4.61
945 951 1.674057 GTCCTCTGTCTGGTGGGTG 59.326 63.158 0.00 0.00 0.00 4.61
946 952 1.536662 GGTCCTCTGTCTGGTGGGT 60.537 63.158 0.00 0.00 0.00 4.51
947 953 2.650116 CGGTCCTCTGTCTGGTGGG 61.650 68.421 0.00 0.00 0.00 4.61
948 954 2.973899 CGGTCCTCTGTCTGGTGG 59.026 66.667 0.00 0.00 0.00 4.61
949 955 2.262915 GCGGTCCTCTGTCTGGTG 59.737 66.667 0.00 0.00 0.00 4.17
950 956 2.997897 GGCGGTCCTCTGTCTGGT 60.998 66.667 0.00 0.00 0.00 4.00
951 957 4.135153 CGGCGGTCCTCTGTCTGG 62.135 72.222 0.00 0.00 0.00 3.86
952 958 3.343788 GACGGCGGTCCTCTGTCTG 62.344 68.421 13.24 0.00 37.19 3.51
953 959 3.063084 GACGGCGGTCCTCTGTCT 61.063 66.667 13.24 0.00 37.19 3.41
966 972 4.609247 GATCGCGACGAGGGACGG 62.609 72.222 12.93 0.00 44.86 4.79
967 973 2.860690 TTTGATCGCGACGAGGGACG 62.861 60.000 12.93 0.00 44.86 4.79
968 974 0.527817 ATTTGATCGCGACGAGGGAC 60.528 55.000 12.93 0.00 44.86 4.46
969 975 0.248907 GATTTGATCGCGACGAGGGA 60.249 55.000 12.93 0.00 46.13 4.20
970 976 1.215655 GGATTTGATCGCGACGAGGG 61.216 60.000 12.93 0.00 39.91 4.30
971 977 1.540607 CGGATTTGATCGCGACGAGG 61.541 60.000 12.93 0.00 39.91 4.63
972 978 1.840061 CGGATTTGATCGCGACGAG 59.160 57.895 12.93 0.00 39.91 4.18
973 979 2.228241 GCGGATTTGATCGCGACGA 61.228 57.895 12.93 2.31 42.48 4.20
974 980 2.242670 GCGGATTTGATCGCGACG 59.757 61.111 12.93 10.16 42.48 5.12
979 985 1.256376 CTTCACTCGCGGATTTGATCG 59.744 52.381 6.13 0.00 0.00 3.69
980 986 2.540515 TCTTCACTCGCGGATTTGATC 58.459 47.619 6.13 0.00 0.00 2.92
981 987 2.672961 TCTTCACTCGCGGATTTGAT 57.327 45.000 6.13 0.00 0.00 2.57
982 988 2.094234 TCATCTTCACTCGCGGATTTGA 60.094 45.455 6.13 0.57 0.00 2.69
983 989 2.029728 GTCATCTTCACTCGCGGATTTG 59.970 50.000 6.13 0.00 0.00 2.32
984 990 2.271800 GTCATCTTCACTCGCGGATTT 58.728 47.619 6.13 0.00 0.00 2.17
985 991 1.204704 TGTCATCTTCACTCGCGGATT 59.795 47.619 6.13 0.00 0.00 3.01
986 992 0.817654 TGTCATCTTCACTCGCGGAT 59.182 50.000 6.13 0.00 0.00 4.18
987 993 0.109272 GTGTCATCTTCACTCGCGGA 60.109 55.000 6.13 0.00 33.59 5.54
988 994 1.078759 GGTGTCATCTTCACTCGCGG 61.079 60.000 6.13 0.00 36.25 6.46
994 1000 0.037326 TGAGCGGGTGTCATCTTCAC 60.037 55.000 0.00 0.00 35.36 3.18
995 1001 0.037326 GTGAGCGGGTGTCATCTTCA 60.037 55.000 0.00 0.00 0.00 3.02
1003 1009 1.534235 AGAAGAGGTGAGCGGGTGT 60.534 57.895 0.00 0.00 0.00 4.16
1004 1010 1.216710 GAGAAGAGGTGAGCGGGTG 59.783 63.158 0.00 0.00 0.00 4.61
1006 1012 1.030488 TACGAGAAGAGGTGAGCGGG 61.030 60.000 0.00 0.00 0.00 6.13
1007 1013 0.099082 GTACGAGAAGAGGTGAGCGG 59.901 60.000 0.00 0.00 0.00 5.52
1010 1016 2.160205 TGGTGTACGAGAAGAGGTGAG 58.840 52.381 0.00 0.00 0.00 3.51
1030 1036 2.764128 ACCTGGGTCGCCGATGAT 60.764 61.111 0.00 0.00 0.00 2.45
1061 1067 2.123164 CCGGATTAGGGACGGGGA 60.123 66.667 0.00 0.00 43.69 4.81
1104 1113 4.580044 GCCGATCATGCGTGCGTG 62.580 66.667 7.74 7.74 0.00 5.34
1110 1119 2.711311 CTGTTGGCCGATCATGCG 59.289 61.111 0.00 0.00 0.00 4.73
1170 1179 1.601903 TGCAACAATCGACAGGTCAAC 59.398 47.619 0.00 0.00 0.00 3.18
1171 1180 1.872952 CTGCAACAATCGACAGGTCAA 59.127 47.619 0.00 0.00 0.00 3.18
1172 1181 1.511850 CTGCAACAATCGACAGGTCA 58.488 50.000 0.00 0.00 0.00 4.02
1173 1182 0.798776 CCTGCAACAATCGACAGGTC 59.201 55.000 8.88 0.00 43.86 3.85
1174 1183 2.932663 CCTGCAACAATCGACAGGT 58.067 52.632 8.88 0.00 43.86 4.00
1176 1185 1.133253 CGCCTGCAACAATCGACAG 59.867 57.895 0.00 0.00 0.00 3.51
1177 1186 1.565156 GACGCCTGCAACAATCGACA 61.565 55.000 0.00 0.00 0.00 4.35
1178 1187 1.132640 GACGCCTGCAACAATCGAC 59.867 57.895 0.00 0.00 0.00 4.20
1180 1189 2.096406 CGACGCCTGCAACAATCG 59.904 61.111 0.00 0.00 0.00 3.34
1181 1190 2.480555 CCGACGCCTGCAACAATC 59.519 61.111 0.00 0.00 0.00 2.67
1246 1259 4.457496 CGATGGTGGGCTCGTGCT 62.457 66.667 9.61 0.00 39.59 4.40
1300 1313 0.234884 GTAAAGCTTGACGCGCTTGT 59.765 50.000 5.73 0.00 46.24 3.16
1308 1321 3.674997 TGTCCCAGATGTAAAGCTTGAC 58.325 45.455 7.04 7.04 0.00 3.18
1317 1330 0.177836 CGCACCATGTCCCAGATGTA 59.822 55.000 0.00 0.00 0.00 2.29
1330 1343 3.304794 GGTAAATAAGTTTGCACGCACCA 60.305 43.478 0.00 0.00 32.33 4.17
1335 1348 4.457949 AGGAAGGGTAAATAAGTTTGCACG 59.542 41.667 0.00 0.00 38.24 5.34
1337 1350 5.479027 GGAAGGAAGGGTAAATAAGTTTGCA 59.521 40.000 0.00 0.00 32.33 4.08
1339 1352 7.093902 GGAAGGAAGGAAGGGTAAATAAGTTTG 60.094 40.741 0.00 0.00 0.00 2.93
1342 1355 5.796399 AGGAAGGAAGGAAGGGTAAATAAGT 59.204 40.000 0.00 0.00 0.00 2.24
1343 1356 6.328782 AGGAAGGAAGGAAGGGTAAATAAG 57.671 41.667 0.00 0.00 0.00 1.73
1344 1357 6.046286 ACAAGGAAGGAAGGAAGGGTAAATAA 59.954 38.462 0.00 0.00 0.00 1.40
1345 1358 5.554350 ACAAGGAAGGAAGGAAGGGTAAATA 59.446 40.000 0.00 0.00 0.00 1.40
1346 1359 4.357097 ACAAGGAAGGAAGGAAGGGTAAAT 59.643 41.667 0.00 0.00 0.00 1.40
1347 1360 3.725267 ACAAGGAAGGAAGGAAGGGTAAA 59.275 43.478 0.00 0.00 0.00 2.01
1348 1361 3.329814 GACAAGGAAGGAAGGAAGGGTAA 59.670 47.826 0.00 0.00 0.00 2.85
1349 1362 2.910977 GACAAGGAAGGAAGGAAGGGTA 59.089 50.000 0.00 0.00 0.00 3.69
1350 1363 1.705745 GACAAGGAAGGAAGGAAGGGT 59.294 52.381 0.00 0.00 0.00 4.34
1351 1364 1.705186 TGACAAGGAAGGAAGGAAGGG 59.295 52.381 0.00 0.00 0.00 3.95
1352 1365 3.508845 TTGACAAGGAAGGAAGGAAGG 57.491 47.619 0.00 0.00 0.00 3.46
1353 1366 5.047731 GGATTTTGACAAGGAAGGAAGGAAG 60.048 44.000 0.00 0.00 0.00 3.46
1354 1367 4.832823 GGATTTTGACAAGGAAGGAAGGAA 59.167 41.667 0.00 0.00 0.00 3.36
1355 1368 4.407365 GGATTTTGACAAGGAAGGAAGGA 58.593 43.478 0.00 0.00 0.00 3.36
1356 1369 3.191371 CGGATTTTGACAAGGAAGGAAGG 59.809 47.826 0.00 0.00 0.00 3.46
1357 1370 4.072131 TCGGATTTTGACAAGGAAGGAAG 58.928 43.478 0.00 0.00 0.00 3.46
1358 1371 4.072131 CTCGGATTTTGACAAGGAAGGAA 58.928 43.478 0.00 0.00 0.00 3.36
1359 1372 3.326588 TCTCGGATTTTGACAAGGAAGGA 59.673 43.478 0.00 0.00 0.00 3.36
1360 1373 3.674997 TCTCGGATTTTGACAAGGAAGG 58.325 45.455 0.00 0.00 0.00 3.46
1361 1374 3.686726 CCTCTCGGATTTTGACAAGGAAG 59.313 47.826 0.00 0.00 0.00 3.46
1362 1375 3.326588 TCCTCTCGGATTTTGACAAGGAA 59.673 43.478 0.00 0.00 33.30 3.36
1363 1376 2.903784 TCCTCTCGGATTTTGACAAGGA 59.096 45.455 0.00 0.00 33.30 3.36
1364 1377 3.334583 TCCTCTCGGATTTTGACAAGG 57.665 47.619 0.00 0.00 33.30 3.61
1365 1378 3.126000 GCTTCCTCTCGGATTTTGACAAG 59.874 47.826 0.00 0.00 39.58 3.16
1366 1379 3.074412 GCTTCCTCTCGGATTTTGACAA 58.926 45.455 0.00 0.00 39.58 3.18
1367 1380 2.038426 TGCTTCCTCTCGGATTTTGACA 59.962 45.455 0.00 0.00 39.58 3.58
1368 1381 2.675348 CTGCTTCCTCTCGGATTTTGAC 59.325 50.000 0.00 0.00 39.58 3.18
1369 1382 2.567169 TCTGCTTCCTCTCGGATTTTGA 59.433 45.455 0.00 0.00 39.58 2.69
1370 1383 2.935201 CTCTGCTTCCTCTCGGATTTTG 59.065 50.000 0.00 0.00 39.58 2.44
1371 1384 2.834549 TCTCTGCTTCCTCTCGGATTTT 59.165 45.455 0.00 0.00 39.58 1.82
1372 1385 2.461695 TCTCTGCTTCCTCTCGGATTT 58.538 47.619 0.00 0.00 39.58 2.17
1373 1386 2.151502 TCTCTGCTTCCTCTCGGATT 57.848 50.000 0.00 0.00 39.58 3.01
1374 1387 2.380064 ATCTCTGCTTCCTCTCGGAT 57.620 50.000 0.00 0.00 39.58 4.18
1375 1388 2.151502 AATCTCTGCTTCCTCTCGGA 57.848 50.000 0.00 0.00 37.60 4.55
1376 1389 2.430332 AGAAATCTCTGCTTCCTCTCGG 59.570 50.000 0.00 0.00 0.00 4.63
1377 1390 3.446799 CAGAAATCTCTGCTTCCTCTCG 58.553 50.000 0.00 0.00 42.66 4.04
1388 1401 3.196685 GTGACACTAGGGCAGAAATCTCT 59.803 47.826 0.00 0.00 0.00 3.10
1389 1402 3.055819 TGTGACACTAGGGCAGAAATCTC 60.056 47.826 7.20 0.00 0.00 2.75
1403 1416 9.283768 TGTAAAATACAGATCAATTGTGACACT 57.716 29.630 7.20 0.00 33.54 3.55
1404 1417 9.329913 GTGTAAAATACAGATCAATTGTGACAC 57.670 33.333 5.13 0.00 39.77 3.67
1407 1420 8.511321 GTGGTGTAAAATACAGATCAATTGTGA 58.489 33.333 5.13 0.00 39.77 3.58
1411 1424 7.450014 TGGTGTGGTGTAAAATACAGATCAATT 59.550 33.333 0.00 0.00 39.77 2.32
1412 1425 6.945435 TGGTGTGGTGTAAAATACAGATCAAT 59.055 34.615 0.00 0.00 39.77 2.57
1419 1432 4.783055 ACTGTGGTGTGGTGTAAAATACA 58.217 39.130 0.00 0.00 36.08 2.29
1420 1433 6.864360 TTACTGTGGTGTGGTGTAAAATAC 57.136 37.500 0.00 0.00 0.00 1.89
1422 1435 6.969993 ATTTACTGTGGTGTGGTGTAAAAT 57.030 33.333 0.00 0.00 36.90 1.82
1423 1436 9.742144 ATATATTTACTGTGGTGTGGTGTAAAA 57.258 29.630 0.00 0.00 36.90 1.52
1424 1437 9.742144 AATATATTTACTGTGGTGTGGTGTAAA 57.258 29.630 0.00 0.00 37.45 2.01
1427 1440 6.094881 GCAATATATTTACTGTGGTGTGGTGT 59.905 38.462 0.00 0.00 0.00 4.16
1428 1441 6.318648 AGCAATATATTTACTGTGGTGTGGTG 59.681 38.462 0.00 0.00 0.00 4.17
1429 1442 6.423182 AGCAATATATTTACTGTGGTGTGGT 58.577 36.000 0.00 0.00 0.00 4.16
1430 1443 6.942532 AGCAATATATTTACTGTGGTGTGG 57.057 37.500 0.00 0.00 0.00 4.17
1495 1512 8.836413 GCATCACCTTATTGTGCTAGTTATTAA 58.164 33.333 0.00 0.00 36.17 1.40
1496 1513 8.210946 AGCATCACCTTATTGTGCTAGTTATTA 58.789 33.333 0.00 0.00 43.69 0.98
1499 1516 5.989477 AGCATCACCTTATTGTGCTAGTTA 58.011 37.500 0.00 0.00 43.69 2.24
1500 1517 4.848357 AGCATCACCTTATTGTGCTAGTT 58.152 39.130 0.00 0.00 43.69 2.24
1501 1518 4.494091 AGCATCACCTTATTGTGCTAGT 57.506 40.909 0.00 0.00 43.69 2.57
1502 1519 5.824904 AAAGCATCACCTTATTGTGCTAG 57.175 39.130 0.00 0.00 44.66 3.42
1503 1520 5.622007 GCAAAAGCATCACCTTATTGTGCTA 60.622 40.000 0.00 0.00 44.66 3.49
1505 1522 3.368843 GCAAAAGCATCACCTTATTGTGC 59.631 43.478 0.00 0.00 36.17 4.57
1512 1529 1.338389 GGCATGCAAAAGCATCACCTT 60.338 47.619 21.36 0.00 0.00 3.50
1514 1531 0.248289 AGGCATGCAAAAGCATCACC 59.752 50.000 21.36 5.58 0.00 4.02
1515 1532 2.088950 AAGGCATGCAAAAGCATCAC 57.911 45.000 21.36 0.00 0.00 3.06
1517 1534 3.499157 TGAAAAAGGCATGCAAAAGCATC 59.501 39.130 21.36 8.87 0.00 3.91
1526 1543 2.460757 ACACCATGAAAAAGGCATGC 57.539 45.000 9.90 9.90 41.30 4.06
1537 1554 4.156556 GGTACTACGTACAGAACACCATGA 59.843 45.833 0.00 0.00 40.41 3.07
1538 1555 4.082625 TGGTACTACGTACAGAACACCATG 60.083 45.833 6.51 0.00 40.41 3.66
1539 1556 4.081406 TGGTACTACGTACAGAACACCAT 58.919 43.478 6.51 0.00 40.41 3.55
1540 1557 3.485394 TGGTACTACGTACAGAACACCA 58.515 45.455 6.51 0.00 40.41 4.17
1542 1559 5.258622 CGTATGGTACTACGTACAGAACAC 58.741 45.833 6.53 0.00 40.41 3.32
1543 1560 5.469373 CGTATGGTACTACGTACAGAACA 57.531 43.478 6.53 0.00 40.41 3.18
1553 1570 5.808540 TGAAATTCAGCACGTATGGTACTAC 59.191 40.000 0.00 0.00 33.82 2.73
1554 1571 5.968254 TGAAATTCAGCACGTATGGTACTA 58.032 37.500 0.00 0.00 33.82 1.82
1555 1572 4.827692 TGAAATTCAGCACGTATGGTACT 58.172 39.130 0.00 0.00 33.82 2.73
1563 1580 5.878332 TCATAACATGAAATTCAGCACGT 57.122 34.783 0.00 0.00 36.11 4.49
1565 1582 6.755141 ATGCTTCATAACATGAAATTCAGCAC 59.245 34.615 12.30 0.00 45.43 4.40
1576 1593 8.026341 ACGAGATGAATATGCTTCATAACATG 57.974 34.615 0.05 0.00 39.08 3.21
1577 1594 9.881649 ATACGAGATGAATATGCTTCATAACAT 57.118 29.630 0.05 8.46 39.08 2.71
5057 10778 3.011949 TGCCAAAGATTGCGAAGTTTC 57.988 42.857 0.00 0.00 0.00 2.78
5064 10785 0.037975 AAGGCTTGCCAAAGATTGCG 60.038 50.000 14.54 0.00 35.19 4.85
5081 10802 4.326826 TGCCTAGATTTGACAACTCCAAG 58.673 43.478 2.15 1.40 0.00 3.61
5089 10810 2.804986 TGGCATGCCTAGATTTGACA 57.195 45.000 35.53 10.21 36.94 3.58
5146 10867 7.225784 TCTCAGCTTCATATCTACTTCCATC 57.774 40.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.