Multiple sequence alignment - TraesCS2B01G542000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G542000 chr2B 100.000 1376 0 0 1 1376 738409225 738410600 0.000000e+00 2542.0
1 TraesCS2B01G542000 chr2B 100.000 1221 0 0 1733 2953 738410957 738412177 0.000000e+00 2255.0
2 TraesCS2B01G542000 chr2B 90.099 101 10 0 985 1085 738338177 738338277 6.640000e-27 132.0
3 TraesCS2B01G542000 chr2B 100.000 32 0 0 491 522 683172746 683172715 3.180000e-05 60.2
4 TraesCS2B01G542000 chr2B 92.500 40 3 0 1337 1376 738410492 738410531 1.140000e-04 58.4
5 TraesCS2B01G542000 chr2D 91.517 1391 79 19 1 1376 606693619 606694985 0.000000e+00 1879.0
6 TraesCS2B01G542000 chr2D 90.060 332 22 4 1747 2071 606695465 606695792 1.270000e-113 420.0
7 TraesCS2B01G542000 chr2D 75.913 739 109 40 694 1375 571458851 571458125 6.140000e-82 315.0
8 TraesCS2B01G542000 chr2D 87.190 242 12 9 2113 2337 606695793 606696032 1.050000e-64 257.0
9 TraesCS2B01G542000 chr2D 74.074 756 113 47 684 1375 571538587 571537851 1.770000e-57 233.0
10 TraesCS2B01G542000 chr2D 86.957 161 12 6 2391 2551 606698079 606698230 3.910000e-39 172.0
11 TraesCS2B01G542000 chr2D 91.000 100 9 0 985 1084 606689999 606690098 5.130000e-28 135.0
12 TraesCS2B01G542000 chr2D 93.333 90 6 0 2315 2404 606697319 606697408 1.850000e-27 134.0
13 TraesCS2B01G542000 chr2A 88.695 1088 62 34 307 1376 738341375 738342419 0.000000e+00 1271.0
14 TraesCS2B01G542000 chr2A 91.720 314 17 5 2092 2399 738343197 738343507 7.560000e-116 427.0
15 TraesCS2B01G542000 chr2A 90.764 314 27 2 2555 2867 748127276 748126964 4.550000e-113 418.0
16 TraesCS2B01G542000 chr2A 89.181 342 22 6 1738 2071 738342876 738343210 2.120000e-111 412.0
17 TraesCS2B01G542000 chr2A 89.809 314 30 2 2555 2867 748192629 748192317 4.580000e-108 401.0
18 TraesCS2B01G542000 chr2A 89.744 312 30 2 2555 2865 748168267 748167957 5.930000e-107 398.0
19 TraesCS2B01G542000 chr2A 87.248 149 15 4 316 461 738341203 738341350 1.820000e-37 167.0
20 TraesCS2B01G542000 chr2A 79.909 219 29 6 880 1084 738335798 738336015 2.370000e-31 147.0
21 TraesCS2B01G542000 chr2A 100.000 32 0 0 491 522 710265735 710265704 3.180000e-05 60.2
22 TraesCS2B01G542000 chr5D 90.491 326 23 6 2554 2872 407515755 407516079 9.780000e-115 424.0
23 TraesCS2B01G542000 chr7D 91.401 314 18 4 2554 2865 578911303 578910997 3.520000e-114 422.0
24 TraesCS2B01G542000 chr3B 87.619 315 36 3 2555 2867 383763710 383764023 2.160000e-96 363.0
25 TraesCS2B01G542000 chr3B 86.207 87 7 5 2792 2875 33828938 33829022 4.050000e-14 89.8
26 TraesCS2B01G542000 chr3A 85.366 246 29 4 2626 2865 132120417 132120661 6.320000e-62 248.0
27 TraesCS2B01G542000 chr6A 81.538 130 19 4 188 313 423308615 423308743 5.210000e-18 102.0
28 TraesCS2B01G542000 chrUn 84.112 107 7 10 2769 2868 93871433 93871330 8.710000e-16 95.3
29 TraesCS2B01G542000 chr7A 89.552 67 7 0 9 75 1765593 1765527 5.240000e-13 86.1
30 TraesCS2B01G542000 chr7A 89.552 67 7 0 9 75 1805424 1805358 5.240000e-13 86.1
31 TraesCS2B01G542000 chr7A 88.060 67 8 0 9 75 1785889 1785823 2.440000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G542000 chr2B 738409225 738412177 2952 False 1618.466667 2542 97.5000 1 2953 3 chr2B.!!$F2 2952
1 TraesCS2B01G542000 chr2D 606689999 606698230 8231 False 499.500000 1879 90.0095 1 2551 6 chr2D.!!$F1 2550
2 TraesCS2B01G542000 chr2D 571458125 571458851 726 True 315.000000 315 75.9130 694 1375 1 chr2D.!!$R1 681
3 TraesCS2B01G542000 chr2D 571537851 571538587 736 True 233.000000 233 74.0740 684 1375 1 chr2D.!!$R2 691
4 TraesCS2B01G542000 chr2A 738341203 738343507 2304 False 569.250000 1271 89.2110 307 2399 4 chr2A.!!$F2 2092

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
982 4827 0.103208 CTAGCCACTAGAAGCACCGG 59.897 60.0 0.0 0.0 36.26 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2597 9014 0.036164 CGGTGTCATCCCCTCAAACA 59.964 55.0 0.0 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 3650 2.134287 GCTGGTCTAGATCCCGCCA 61.134 63.158 13.21 7.43 30.78 5.69
53 3674 0.533491 TAACGGACGGGAACTGATGG 59.467 55.000 0.00 0.00 38.67 3.51
79 3700 2.336478 CGGGGCGTTAACAATGGCA 61.336 57.895 6.39 0.00 44.14 4.92
232 3853 8.426251 GTTCAGATAAAGAGTCGTAAGTTTCAC 58.574 37.037 0.00 0.00 39.48 3.18
285 3906 4.577687 TGCGAGATTAAACTACTTTGCG 57.422 40.909 0.00 0.00 0.00 4.85
299 3921 3.765026 ACTTTGCGAACACGAAACAATT 58.235 36.364 0.00 0.00 0.00 2.32
304 3926 2.852901 GCGAACACGAAACAATTGAGCA 60.853 45.455 13.59 0.00 0.00 4.26
305 3927 2.966708 CGAACACGAAACAATTGAGCAG 59.033 45.455 13.59 3.48 0.00 4.24
308 3930 0.238289 ACGAAACAATTGAGCAGCCG 59.762 50.000 13.59 8.79 0.00 5.52
386 4008 5.381174 AGTTCACTGTGCGTACATAAGTA 57.619 39.130 6.84 0.00 35.97 2.24
438 4246 2.808543 CTGCTTCAAAGACTACCACCAC 59.191 50.000 0.00 0.00 0.00 4.16
501 4309 3.371285 GGTTTCCATACGCAGAAGAAGAC 59.629 47.826 0.00 0.00 0.00 3.01
539 4347 1.938577 CTCTCGGCTGATTTGGATGTG 59.061 52.381 0.00 0.00 0.00 3.21
586 4394 5.768662 CCCACAGCTGATTAATGAGATTGAT 59.231 40.000 23.35 0.00 0.00 2.57
626 4434 2.202531 GACGCCGGGTACGACTTC 60.203 66.667 2.18 0.00 44.60 3.01
651 4459 4.988598 CACGAACAGTGCCCGCCT 62.989 66.667 4.88 0.00 44.72 5.52
652 4460 4.988598 ACGAACAGTGCCCGCCTG 62.989 66.667 4.88 4.31 36.01 4.85
757 4568 2.372837 TGCTAGATTGCTGGGATGCATA 59.627 45.455 0.00 0.00 42.96 3.14
769 4580 2.031157 GGGATGCATAAATGTGTACCGC 60.031 50.000 0.00 0.00 0.00 5.68
775 4586 0.391395 TAAATGTGTACCGCCCACCG 60.391 55.000 0.00 0.00 31.71 4.94
870 4697 1.915769 ACACTCACTGCTCCTCCCC 60.916 63.158 0.00 0.00 0.00 4.81
920 4750 4.777877 TGGCCTCTCCCTCCTATAAATA 57.222 45.455 3.32 0.00 0.00 1.40
948 4778 3.309138 GCTCTGCATGCTAATCCATATCG 59.691 47.826 20.33 0.00 0.00 2.92
951 4781 4.021192 TCTGCATGCTAATCCATATCGTCA 60.021 41.667 20.33 0.00 0.00 4.35
952 4782 4.640364 TGCATGCTAATCCATATCGTCAA 58.360 39.130 20.33 0.00 0.00 3.18
953 4783 5.247862 TGCATGCTAATCCATATCGTCAAT 58.752 37.500 20.33 0.00 0.00 2.57
954 4784 5.352293 TGCATGCTAATCCATATCGTCAATC 59.648 40.000 20.33 0.00 0.00 2.67
955 4785 5.352293 GCATGCTAATCCATATCGTCAATCA 59.648 40.000 11.37 0.00 0.00 2.57
982 4827 0.103208 CTAGCCACTAGAAGCACCGG 59.897 60.000 0.00 0.00 36.26 5.28
1131 5002 9.066892 ACTTTTGAACTAGCATGAATTAACTGA 57.933 29.630 0.00 0.00 0.00 3.41
1141 5014 7.855545 AGCATGAATTAACTGATCGTCATTAC 58.144 34.615 0.00 0.00 0.00 1.89
1180 5053 2.789092 GCTGCGTGCTGCTACTAATTTG 60.789 50.000 15.32 0.00 46.63 2.32
1189 5062 5.032863 GCTGCTACTAATTTGAATGCACAG 58.967 41.667 0.00 0.00 0.00 3.66
1301 5250 4.778143 GCTACCCAGGCCACGGTG 62.778 72.222 21.04 12.96 33.36 4.94
1302 5251 4.096003 CTACCCAGGCCACGGTGG 62.096 72.222 22.87 22.87 41.55 4.61
1303 5252 4.642488 TACCCAGGCCACGGTGGA 62.642 66.667 30.65 4.77 40.96 4.02
1856 6247 2.124570 GGCGGCAGTGGATGTCAT 60.125 61.111 3.07 0.00 30.75 3.06
1962 6353 1.661509 CGCAACTGAGCACACGAGA 60.662 57.895 0.00 0.00 0.00 4.04
1969 6360 1.447489 GAGCACACGAGATGCAGCT 60.447 57.895 2.90 2.90 45.92 4.24
2004 6403 2.227149 TGTGCGTACAACTCTACGTGAT 59.773 45.455 3.02 0.00 41.34 3.06
2015 6414 3.243737 ACTCTACGTGATGTTGTTCTGCA 60.244 43.478 0.00 0.00 0.00 4.41
2017 6416 1.662517 ACGTGATGTTGTTCTGCACA 58.337 45.000 0.00 0.00 0.00 4.57
2018 6417 1.330521 ACGTGATGTTGTTCTGCACAC 59.669 47.619 0.00 0.00 33.98 3.82
2019 6418 1.657260 CGTGATGTTGTTCTGCACACG 60.657 52.381 6.35 6.35 42.04 4.49
2020 6419 1.330521 GTGATGTTGTTCTGCACACGT 59.669 47.619 0.00 0.00 33.98 4.49
2072 6471 9.871238 TGGTCTCTGATAAATAAAGTGAGTAAC 57.129 33.333 0.00 0.00 0.00 2.50
2073 6472 9.315525 GGTCTCTGATAAATAAAGTGAGTAACC 57.684 37.037 0.00 0.00 0.00 2.85
2074 6473 9.871238 GTCTCTGATAAATAAAGTGAGTAACCA 57.129 33.333 0.00 0.00 0.00 3.67
2077 6476 9.109393 TCTGATAAATAAAGTGAGTAACCATGC 57.891 33.333 0.00 0.00 0.00 4.06
2078 6477 8.800370 TGATAAATAAAGTGAGTAACCATGCA 57.200 30.769 0.00 0.00 0.00 3.96
2079 6478 9.237187 TGATAAATAAAGTGAGTAACCATGCAA 57.763 29.630 0.00 0.00 0.00 4.08
2166 6576 4.614535 GCACAATGATCTTGGAGAACACAC 60.615 45.833 8.95 0.00 29.64 3.82
2167 6577 3.748048 ACAATGATCTTGGAGAACACACG 59.252 43.478 8.95 0.00 29.64 4.49
2202 6620 8.549731 TGTTCTTGTATGTATTAATACCCCACA 58.450 33.333 20.35 17.26 32.93 4.17
2307 6730 5.864418 ATATAGCCAAAGTTCTACACGGA 57.136 39.130 0.00 0.00 0.00 4.69
2308 6731 2.922740 AGCCAAAGTTCTACACGGAA 57.077 45.000 0.00 0.00 0.00 4.30
2362 8095 5.633830 TGCTGCAAAGAAAATAGAGGAAG 57.366 39.130 0.00 0.00 0.00 3.46
2367 8100 8.628280 GCTGCAAAGAAAATAGAGGAAGATAAT 58.372 33.333 0.00 0.00 0.00 1.28
2427 8844 0.555769 AAAGACTTCAACCAGGGGCA 59.444 50.000 0.00 0.00 0.00 5.36
2471 8888 1.546029 ACTGATCAAGCGCACTGTAGA 59.454 47.619 11.47 0.00 0.00 2.59
2475 8892 0.243907 TCAAGCGCACTGTAGAGACC 59.756 55.000 11.47 0.00 0.00 3.85
2476 8893 0.038251 CAAGCGCACTGTAGAGACCA 60.038 55.000 11.47 0.00 0.00 4.02
2478 8895 1.179174 AGCGCACTGTAGAGACCACA 61.179 55.000 11.47 0.00 0.00 4.17
2541 8958 9.458727 AGCTATAACATAAACTAGAGGCGTATA 57.541 33.333 0.00 0.00 0.00 1.47
2552 8969 9.909644 AAACTAGAGGCGTATAATAGTAATGTG 57.090 33.333 0.00 0.00 0.00 3.21
2553 8970 8.632906 ACTAGAGGCGTATAATAGTAATGTGT 57.367 34.615 0.00 0.00 0.00 3.72
2554 8971 8.728833 ACTAGAGGCGTATAATAGTAATGTGTC 58.271 37.037 0.00 0.00 0.00 3.67
2555 8972 7.762588 AGAGGCGTATAATAGTAATGTGTCT 57.237 36.000 0.00 0.00 0.00 3.41
2556 8973 7.818642 AGAGGCGTATAATAGTAATGTGTCTC 58.181 38.462 0.00 0.00 0.00 3.36
2557 8974 6.921914 AGGCGTATAATAGTAATGTGTCTCC 58.078 40.000 0.00 0.00 0.00 3.71
2558 8975 6.720288 AGGCGTATAATAGTAATGTGTCTCCT 59.280 38.462 0.00 0.00 0.00 3.69
2559 8976 6.807230 GGCGTATAATAGTAATGTGTCTCCTG 59.193 42.308 0.00 0.00 0.00 3.86
2560 8977 7.309012 GGCGTATAATAGTAATGTGTCTCCTGA 60.309 40.741 0.00 0.00 0.00 3.86
2561 8978 8.244802 GCGTATAATAGTAATGTGTCTCCTGAT 58.755 37.037 0.00 0.00 0.00 2.90
2562 8979 9.776158 CGTATAATAGTAATGTGTCTCCTGATC 57.224 37.037 0.00 0.00 0.00 2.92
2566 8983 5.946942 AGTAATGTGTCTCCTGATCATGT 57.053 39.130 0.00 0.00 0.00 3.21
2567 8984 5.668471 AGTAATGTGTCTCCTGATCATGTG 58.332 41.667 0.00 0.00 0.00 3.21
2568 8985 3.555527 ATGTGTCTCCTGATCATGTGG 57.444 47.619 0.00 0.00 0.00 4.17
2569 8986 1.556451 TGTGTCTCCTGATCATGTGGG 59.444 52.381 0.00 0.00 0.00 4.61
2570 8987 1.833630 GTGTCTCCTGATCATGTGGGA 59.166 52.381 0.00 0.00 0.00 4.37
2571 8988 2.113807 TGTCTCCTGATCATGTGGGAG 58.886 52.381 18.42 18.42 44.69 4.30
2572 8989 2.114616 GTCTCCTGATCATGTGGGAGT 58.885 52.381 21.81 0.00 43.97 3.85
2573 8990 2.503356 GTCTCCTGATCATGTGGGAGTT 59.497 50.000 21.81 0.00 43.97 3.01
2574 8991 2.502947 TCTCCTGATCATGTGGGAGTTG 59.497 50.000 21.81 4.91 43.97 3.16
2575 8992 2.238144 CTCCTGATCATGTGGGAGTTGT 59.762 50.000 16.91 0.00 40.11 3.32
2576 8993 2.026915 TCCTGATCATGTGGGAGTTGTG 60.027 50.000 0.00 0.00 0.00 3.33
2577 8994 2.362736 CTGATCATGTGGGAGTTGTGG 58.637 52.381 0.00 0.00 0.00 4.17
2578 8995 1.984424 TGATCATGTGGGAGTTGTGGA 59.016 47.619 0.00 0.00 0.00 4.02
2579 8996 2.374839 TGATCATGTGGGAGTTGTGGAA 59.625 45.455 0.00 0.00 0.00 3.53
2580 8997 3.181435 TGATCATGTGGGAGTTGTGGAAA 60.181 43.478 0.00 0.00 0.00 3.13
2581 8998 2.582052 TCATGTGGGAGTTGTGGAAAC 58.418 47.619 0.00 0.00 0.00 2.78
2582 8999 2.092158 TCATGTGGGAGTTGTGGAAACA 60.092 45.455 0.00 0.00 38.70 2.83
2596 9013 4.764679 TGGAAACACAGGAATTCGATTG 57.235 40.909 0.00 0.83 33.40 2.67
2597 9014 4.141287 TGGAAACACAGGAATTCGATTGT 58.859 39.130 0.00 1.46 33.40 2.71
2598 9015 4.023279 TGGAAACACAGGAATTCGATTGTG 60.023 41.667 23.55 23.55 44.81 3.33
2603 9020 5.107109 CACAGGAATTCGATTGTGTTTGA 57.893 39.130 19.85 0.00 36.92 2.69
2604 9021 5.149273 CACAGGAATTCGATTGTGTTTGAG 58.851 41.667 19.85 3.18 36.92 3.02
2605 9022 4.216257 ACAGGAATTCGATTGTGTTTGAGG 59.784 41.667 0.00 0.00 0.00 3.86
2606 9023 3.758554 AGGAATTCGATTGTGTTTGAGGG 59.241 43.478 0.00 0.00 0.00 4.30
2607 9024 3.119495 GGAATTCGATTGTGTTTGAGGGG 60.119 47.826 0.00 0.00 0.00 4.79
2608 9025 2.940994 TTCGATTGTGTTTGAGGGGA 57.059 45.000 0.00 0.00 0.00 4.81
2609 9026 3.433306 TTCGATTGTGTTTGAGGGGAT 57.567 42.857 0.00 0.00 0.00 3.85
2610 9027 2.710377 TCGATTGTGTTTGAGGGGATG 58.290 47.619 0.00 0.00 0.00 3.51
2611 9028 2.304470 TCGATTGTGTTTGAGGGGATGA 59.696 45.455 0.00 0.00 0.00 2.92
2612 9029 2.420022 CGATTGTGTTTGAGGGGATGAC 59.580 50.000 0.00 0.00 0.00 3.06
2613 9030 3.420893 GATTGTGTTTGAGGGGATGACA 58.579 45.455 0.00 0.00 0.00 3.58
2614 9031 2.270352 TGTGTTTGAGGGGATGACAC 57.730 50.000 0.00 0.00 40.62 3.67
2615 9032 1.202879 TGTGTTTGAGGGGATGACACC 60.203 52.381 0.00 0.00 39.76 4.16
2616 9033 0.036164 TGTTTGAGGGGATGACACCG 59.964 55.000 0.00 0.00 45.76 4.94
2617 9034 0.676782 GTTTGAGGGGATGACACCGG 60.677 60.000 0.00 0.00 45.76 5.28
2618 9035 0.838554 TTTGAGGGGATGACACCGGA 60.839 55.000 9.46 0.00 45.76 5.14
2619 9036 1.550130 TTGAGGGGATGACACCGGAC 61.550 60.000 9.46 0.00 45.76 4.79
2620 9037 3.075005 AGGGGATGACACCGGACG 61.075 66.667 9.46 0.00 45.76 4.79
2621 9038 3.387947 GGGGATGACACCGGACGT 61.388 66.667 9.46 4.27 0.00 4.34
2629 9046 2.431942 CACCGGACGTGCAGGTAC 60.432 66.667 19.36 12.32 43.66 3.34
2630 9047 2.599578 ACCGGACGTGCAGGTACT 60.600 61.111 19.04 0.00 43.67 2.73
2631 9048 2.181021 CCGGACGTGCAGGTACTC 59.819 66.667 19.04 8.26 34.60 2.59
2632 9049 2.181021 CGGACGTGCAGGTACTCC 59.819 66.667 19.04 12.13 34.60 3.85
2633 9050 2.341101 CGGACGTGCAGGTACTCCT 61.341 63.158 19.04 0.00 46.37 3.69
2634 9051 1.028330 CGGACGTGCAGGTACTCCTA 61.028 60.000 19.04 0.00 43.07 2.94
2635 9052 0.455005 GGACGTGCAGGTACTCCTAC 59.545 60.000 14.57 0.00 43.07 3.18
2636 9053 0.098376 GACGTGCAGGTACTCCTACG 59.902 60.000 12.81 7.68 45.74 3.51
2637 9054 1.310933 ACGTGCAGGTACTCCTACGG 61.311 60.000 10.95 0.00 45.03 4.02
2638 9055 1.028330 CGTGCAGGTACTCCTACGGA 61.028 60.000 0.00 0.00 43.07 4.69
2639 9056 1.180029 GTGCAGGTACTCCTACGGAA 58.820 55.000 0.00 0.00 43.07 4.30
2640 9057 1.547372 GTGCAGGTACTCCTACGGAAA 59.453 52.381 0.00 0.00 43.07 3.13
2641 9058 2.028748 GTGCAGGTACTCCTACGGAAAA 60.029 50.000 0.00 0.00 43.07 2.29
2642 9059 2.835764 TGCAGGTACTCCTACGGAAAAT 59.164 45.455 0.00 0.00 43.07 1.82
2643 9060 4.025360 TGCAGGTACTCCTACGGAAAATA 58.975 43.478 0.00 0.00 43.07 1.40
2644 9061 4.098960 TGCAGGTACTCCTACGGAAAATAG 59.901 45.833 0.00 0.00 43.07 1.73
2645 9062 4.618965 CAGGTACTCCTACGGAAAATAGC 58.381 47.826 0.00 0.00 43.07 2.97
2646 9063 3.640498 AGGTACTCCTACGGAAAATAGCC 59.360 47.826 0.00 0.00 43.12 3.93
2647 9064 3.640498 GGTACTCCTACGGAAAATAGCCT 59.360 47.826 0.00 0.00 0.00 4.58
2648 9065 4.261952 GGTACTCCTACGGAAAATAGCCTC 60.262 50.000 0.00 0.00 0.00 4.70
2649 9066 2.699321 ACTCCTACGGAAAATAGCCTCC 59.301 50.000 0.00 0.00 0.00 4.30
2655 9072 1.300481 GGAAAATAGCCTCCGAGTGC 58.700 55.000 0.00 0.00 0.00 4.40
2656 9073 0.931005 GAAAATAGCCTCCGAGTGCG 59.069 55.000 0.00 0.00 37.24 5.34
2657 9074 1.090052 AAAATAGCCTCCGAGTGCGC 61.090 55.000 0.00 0.00 35.83 6.09
2658 9075 3.774959 AATAGCCTCCGAGTGCGCG 62.775 63.158 0.00 0.00 35.83 6.86
2682 9099 4.832608 GCGAAGGCCGGGATCGTT 62.833 66.667 19.36 0.00 38.75 3.85
2683 9100 2.585247 CGAAGGCCGGGATCGTTC 60.585 66.667 2.18 3.16 33.95 3.95
2684 9101 2.582436 GAAGGCCGGGATCGTTCA 59.418 61.111 2.18 0.00 33.95 3.18
2685 9102 1.146263 GAAGGCCGGGATCGTTCAT 59.854 57.895 2.18 0.00 33.95 2.57
2686 9103 0.391597 GAAGGCCGGGATCGTTCATA 59.608 55.000 2.18 0.00 33.95 2.15
2687 9104 0.393077 AAGGCCGGGATCGTTCATAG 59.607 55.000 2.18 0.00 33.95 2.23
2688 9105 0.759436 AGGCCGGGATCGTTCATAGT 60.759 55.000 2.18 0.00 33.95 2.12
2689 9106 0.600255 GGCCGGGATCGTTCATAGTG 60.600 60.000 2.18 0.00 33.95 2.74
2690 9107 0.387929 GCCGGGATCGTTCATAGTGA 59.612 55.000 2.18 0.00 33.95 3.41
2691 9108 1.000955 GCCGGGATCGTTCATAGTGAT 59.999 52.381 2.18 0.00 33.95 3.06
2692 9109 2.548067 GCCGGGATCGTTCATAGTGATT 60.548 50.000 2.18 0.00 33.95 2.57
2693 9110 3.728845 CCGGGATCGTTCATAGTGATTT 58.271 45.455 0.00 0.00 33.95 2.17
2694 9111 3.741344 CCGGGATCGTTCATAGTGATTTC 59.259 47.826 0.00 0.00 33.95 2.17
2695 9112 3.425525 CGGGATCGTTCATAGTGATTTCG 59.574 47.826 0.00 0.00 0.00 3.46
2696 9113 4.617959 GGGATCGTTCATAGTGATTTCGA 58.382 43.478 0.00 0.00 32.55 3.71
2697 9114 4.681942 GGGATCGTTCATAGTGATTTCGAG 59.318 45.833 0.00 0.00 31.96 4.04
2698 9115 4.149046 GGATCGTTCATAGTGATTTCGAGC 59.851 45.833 0.00 0.00 33.63 5.03
2699 9116 3.444916 TCGTTCATAGTGATTTCGAGCC 58.555 45.455 0.00 0.00 0.00 4.70
2700 9117 3.119280 TCGTTCATAGTGATTTCGAGCCA 60.119 43.478 0.00 0.00 0.00 4.75
2701 9118 3.804325 CGTTCATAGTGATTTCGAGCCAT 59.196 43.478 0.00 0.00 0.00 4.40
2702 9119 4.271049 CGTTCATAGTGATTTCGAGCCATT 59.729 41.667 0.00 0.00 0.00 3.16
2703 9120 5.505286 GTTCATAGTGATTTCGAGCCATTG 58.495 41.667 0.00 0.00 0.00 2.82
2704 9121 4.129380 TCATAGTGATTTCGAGCCATTGG 58.871 43.478 0.00 0.00 0.00 3.16
2715 9132 2.515398 CCATTGGCGGCCCAGATA 59.485 61.111 17.97 0.00 43.37 1.98
2716 9133 1.601759 CCATTGGCGGCCCAGATAG 60.602 63.158 17.97 0.29 43.37 2.08
2717 9134 1.601759 CATTGGCGGCCCAGATAGG 60.602 63.158 17.97 0.00 43.37 2.57
2718 9135 2.078665 ATTGGCGGCCCAGATAGGT 61.079 57.895 17.97 0.00 43.37 3.08
2719 9136 2.343475 ATTGGCGGCCCAGATAGGTG 62.343 60.000 17.97 0.00 43.37 4.00
2720 9137 3.480133 GGCGGCCCAGATAGGTGT 61.480 66.667 8.12 0.00 34.66 4.16
2721 9138 2.203070 GCGGCCCAGATAGGTGTG 60.203 66.667 0.00 0.00 34.66 3.82
2722 9139 3.031417 GCGGCCCAGATAGGTGTGT 62.031 63.158 0.00 0.00 34.66 3.72
2723 9140 1.153369 CGGCCCAGATAGGTGTGTG 60.153 63.158 0.00 0.00 34.66 3.82
2724 9141 1.224592 GGCCCAGATAGGTGTGTGG 59.775 63.158 0.00 0.00 34.66 4.17
2726 9143 1.224592 CCCAGATAGGTGTGTGGGC 59.775 63.158 0.00 0.00 44.66 5.36
2727 9144 1.561769 CCCAGATAGGTGTGTGGGCA 61.562 60.000 0.00 0.00 44.66 5.36
2728 9145 0.107508 CCAGATAGGTGTGTGGGCAG 60.108 60.000 0.00 0.00 0.00 4.85
2729 9146 0.745845 CAGATAGGTGTGTGGGCAGC 60.746 60.000 0.00 0.00 37.16 5.25
2731 9148 4.551148 TAGGTGTGTGGGCAGCTA 57.449 55.556 0.00 1.49 44.25 3.32
2732 9149 2.286826 TAGGTGTGTGGGCAGCTAG 58.713 57.895 0.00 0.00 44.25 3.42
2733 9150 1.264749 TAGGTGTGTGGGCAGCTAGG 61.265 60.000 0.00 0.00 44.25 3.02
2734 9151 2.045926 GTGTGTGGGCAGCTAGGG 60.046 66.667 0.00 0.00 0.00 3.53
2735 9152 2.203922 TGTGTGGGCAGCTAGGGA 60.204 61.111 0.00 0.00 0.00 4.20
2736 9153 2.293318 TGTGTGGGCAGCTAGGGAG 61.293 63.158 0.00 0.00 0.00 4.30
2737 9154 2.122729 TGTGGGCAGCTAGGGAGT 59.877 61.111 0.00 0.00 0.00 3.85
2738 9155 0.976073 GTGTGGGCAGCTAGGGAGTA 60.976 60.000 0.00 0.00 0.00 2.59
2739 9156 0.687757 TGTGGGCAGCTAGGGAGTAG 60.688 60.000 0.00 0.00 0.00 2.57
2740 9157 0.688087 GTGGGCAGCTAGGGAGTAGT 60.688 60.000 0.00 0.00 0.00 2.73
2741 9158 0.397254 TGGGCAGCTAGGGAGTAGTC 60.397 60.000 0.00 0.00 0.00 2.59
2742 9159 1.116536 GGGCAGCTAGGGAGTAGTCC 61.117 65.000 8.22 8.22 43.05 3.85
2743 9160 0.397254 GGCAGCTAGGGAGTAGTCCA 60.397 60.000 18.49 0.00 46.07 4.02
2744 9161 1.710816 GCAGCTAGGGAGTAGTCCAT 58.289 55.000 18.49 13.97 46.07 3.41
2745 9162 1.342819 GCAGCTAGGGAGTAGTCCATG 59.657 57.143 18.49 8.38 46.07 3.66
2746 9163 2.672098 CAGCTAGGGAGTAGTCCATGT 58.328 52.381 18.49 4.91 46.07 3.21
2747 9164 3.833732 CAGCTAGGGAGTAGTCCATGTA 58.166 50.000 18.49 5.79 46.07 2.29
2748 9165 4.215908 CAGCTAGGGAGTAGTCCATGTAA 58.784 47.826 18.49 0.00 46.07 2.41
2749 9166 4.835615 CAGCTAGGGAGTAGTCCATGTAAT 59.164 45.833 18.49 0.00 46.07 1.89
2750 9167 5.305644 CAGCTAGGGAGTAGTCCATGTAATT 59.694 44.000 18.49 0.00 46.07 1.40
2751 9168 5.540719 AGCTAGGGAGTAGTCCATGTAATTC 59.459 44.000 18.49 0.00 46.07 2.17
2752 9169 5.540719 GCTAGGGAGTAGTCCATGTAATTCT 59.459 44.000 18.49 6.03 46.07 2.40
2753 9170 6.042208 GCTAGGGAGTAGTCCATGTAATTCTT 59.958 42.308 18.49 0.00 46.07 2.52
2754 9171 6.487299 AGGGAGTAGTCCATGTAATTCTTC 57.513 41.667 18.49 0.00 46.07 2.87
2755 9172 5.069251 AGGGAGTAGTCCATGTAATTCTTCG 59.931 44.000 18.49 0.00 46.07 3.79
2756 9173 5.290386 GGAGTAGTCCATGTAATTCTTCGG 58.710 45.833 12.02 0.00 43.31 4.30
2757 9174 5.277857 AGTAGTCCATGTAATTCTTCGGG 57.722 43.478 0.00 0.00 0.00 5.14
2758 9175 4.715297 AGTAGTCCATGTAATTCTTCGGGT 59.285 41.667 0.00 0.00 0.00 5.28
2759 9176 3.873910 AGTCCATGTAATTCTTCGGGTG 58.126 45.455 0.00 0.00 0.00 4.61
2760 9177 2.943033 GTCCATGTAATTCTTCGGGTGG 59.057 50.000 0.00 0.00 0.00 4.61
2761 9178 2.841266 TCCATGTAATTCTTCGGGTGGA 59.159 45.455 0.00 0.00 32.48 4.02
2762 9179 3.118408 TCCATGTAATTCTTCGGGTGGAG 60.118 47.826 0.00 0.00 31.39 3.86
2763 9180 3.370527 CCATGTAATTCTTCGGGTGGAGT 60.371 47.826 0.00 0.00 0.00 3.85
2764 9181 4.141801 CCATGTAATTCTTCGGGTGGAGTA 60.142 45.833 0.00 0.00 0.00 2.59
2765 9182 4.460948 TGTAATTCTTCGGGTGGAGTAC 57.539 45.455 0.00 0.00 0.00 2.73
2766 9183 2.667473 AATTCTTCGGGTGGAGTACG 57.333 50.000 0.00 0.00 0.00 3.67
2767 9184 1.553706 ATTCTTCGGGTGGAGTACGT 58.446 50.000 0.00 0.00 0.00 3.57
2768 9185 1.331214 TTCTTCGGGTGGAGTACGTT 58.669 50.000 0.00 0.00 0.00 3.99
2769 9186 1.331214 TCTTCGGGTGGAGTACGTTT 58.669 50.000 0.00 0.00 0.00 3.60
2770 9187 1.000060 TCTTCGGGTGGAGTACGTTTG 60.000 52.381 0.00 0.00 0.00 2.93
2771 9188 0.600782 TTCGGGTGGAGTACGTTTGC 60.601 55.000 0.00 0.00 0.00 3.68
2772 9189 1.005394 CGGGTGGAGTACGTTTGCT 60.005 57.895 0.00 0.00 0.00 3.91
2773 9190 0.601841 CGGGTGGAGTACGTTTGCTT 60.602 55.000 0.00 0.00 0.00 3.91
2774 9191 0.872388 GGGTGGAGTACGTTTGCTTG 59.128 55.000 0.00 0.00 0.00 4.01
2775 9192 1.589803 GGTGGAGTACGTTTGCTTGT 58.410 50.000 0.00 0.00 0.00 3.16
2776 9193 1.263217 GGTGGAGTACGTTTGCTTGTG 59.737 52.381 0.00 0.00 0.00 3.33
2777 9194 1.937899 GTGGAGTACGTTTGCTTGTGT 59.062 47.619 0.00 0.00 0.00 3.72
2778 9195 3.125316 GTGGAGTACGTTTGCTTGTGTA 58.875 45.455 0.00 0.00 0.00 2.90
2779 9196 3.556775 GTGGAGTACGTTTGCTTGTGTAA 59.443 43.478 0.00 0.00 0.00 2.41
2780 9197 4.034279 GTGGAGTACGTTTGCTTGTGTAAA 59.966 41.667 0.00 0.00 0.00 2.01
2781 9198 4.034279 TGGAGTACGTTTGCTTGTGTAAAC 59.966 41.667 0.00 0.00 42.61 2.01
2788 9205 5.783298 GTTTGCTTGTGTAAACGTGTATG 57.217 39.130 0.00 0.00 38.56 2.39
2789 9206 5.267776 GTTTGCTTGTGTAAACGTGTATGT 58.732 37.500 0.00 0.00 38.56 2.29
2790 9207 6.420588 GTTTGCTTGTGTAAACGTGTATGTA 58.579 36.000 0.00 0.00 38.56 2.29
2791 9208 6.600246 TTGCTTGTGTAAACGTGTATGTAA 57.400 33.333 0.00 0.00 0.00 2.41
2792 9209 6.600246 TGCTTGTGTAAACGTGTATGTAAA 57.400 33.333 0.00 0.00 0.00 2.01
2793 9210 6.420588 TGCTTGTGTAAACGTGTATGTAAAC 58.579 36.000 0.00 0.00 0.00 2.01
2794 9211 6.258287 TGCTTGTGTAAACGTGTATGTAAACT 59.742 34.615 0.00 0.00 0.00 2.66
2795 9212 6.572254 GCTTGTGTAAACGTGTATGTAAACTG 59.428 38.462 0.00 0.00 0.00 3.16
2796 9213 7.536895 TTGTGTAAACGTGTATGTAAACTGT 57.463 32.000 0.00 0.00 0.00 3.55
2797 9214 6.935291 TGTGTAAACGTGTATGTAAACTGTG 58.065 36.000 0.00 0.00 0.00 3.66
2798 9215 6.018913 TGTGTAAACGTGTATGTAAACTGTGG 60.019 38.462 0.00 0.00 0.00 4.17
2799 9216 6.200665 GTGTAAACGTGTATGTAAACTGTGGA 59.799 38.462 0.00 0.00 0.00 4.02
2800 9217 6.930164 TGTAAACGTGTATGTAAACTGTGGAT 59.070 34.615 0.00 0.00 0.00 3.41
2801 9218 5.856126 AACGTGTATGTAAACTGTGGATG 57.144 39.130 0.00 0.00 0.00 3.51
2802 9219 4.250464 ACGTGTATGTAAACTGTGGATGG 58.750 43.478 0.00 0.00 0.00 3.51
2803 9220 3.621268 CGTGTATGTAAACTGTGGATGGG 59.379 47.826 0.00 0.00 0.00 4.00
2804 9221 3.945285 GTGTATGTAAACTGTGGATGGGG 59.055 47.826 0.00 0.00 0.00 4.96
2805 9222 2.143876 ATGTAAACTGTGGATGGGGC 57.856 50.000 0.00 0.00 0.00 5.80
2806 9223 1.072266 TGTAAACTGTGGATGGGGCT 58.928 50.000 0.00 0.00 0.00 5.19
2807 9224 1.427368 TGTAAACTGTGGATGGGGCTT 59.573 47.619 0.00 0.00 0.00 4.35
2808 9225 2.092323 GTAAACTGTGGATGGGGCTTC 58.908 52.381 0.00 0.00 0.00 3.86
2809 9226 0.779997 AAACTGTGGATGGGGCTTCT 59.220 50.000 0.00 0.00 0.00 2.85
2810 9227 0.779997 AACTGTGGATGGGGCTTCTT 59.220 50.000 0.00 0.00 0.00 2.52
2811 9228 0.779997 ACTGTGGATGGGGCTTCTTT 59.220 50.000 0.00 0.00 0.00 2.52
2812 9229 1.147817 ACTGTGGATGGGGCTTCTTTT 59.852 47.619 0.00 0.00 0.00 2.27
2813 9230 1.821136 CTGTGGATGGGGCTTCTTTTC 59.179 52.381 0.00 0.00 0.00 2.29
2814 9231 1.186200 GTGGATGGGGCTTCTTTTCC 58.814 55.000 0.00 0.00 0.00 3.13
2815 9232 0.041090 TGGATGGGGCTTCTTTTCCC 59.959 55.000 0.00 0.00 41.87 3.97
2820 9237 3.579275 GGGCTTCTTTTCCCCTCTC 57.421 57.895 0.00 0.00 36.50 3.20
2821 9238 0.995803 GGGCTTCTTTTCCCCTCTCT 59.004 55.000 0.00 0.00 36.50 3.10
2822 9239 1.356059 GGGCTTCTTTTCCCCTCTCTT 59.644 52.381 0.00 0.00 36.50 2.85
2823 9240 2.619332 GGGCTTCTTTTCCCCTCTCTTC 60.619 54.545 0.00 0.00 36.50 2.87
2824 9241 2.307392 GGCTTCTTTTCCCCTCTCTTCT 59.693 50.000 0.00 0.00 0.00 2.85
2825 9242 3.245087 GGCTTCTTTTCCCCTCTCTTCTT 60.245 47.826 0.00 0.00 0.00 2.52
2826 9243 4.006989 GCTTCTTTTCCCCTCTCTTCTTC 58.993 47.826 0.00 0.00 0.00 2.87
2827 9244 4.505742 GCTTCTTTTCCCCTCTCTTCTTCA 60.506 45.833 0.00 0.00 0.00 3.02
2828 9245 5.625150 CTTCTTTTCCCCTCTCTTCTTCAA 58.375 41.667 0.00 0.00 0.00 2.69
2829 9246 5.850046 TCTTTTCCCCTCTCTTCTTCAAT 57.150 39.130 0.00 0.00 0.00 2.57
2830 9247 6.952605 TCTTTTCCCCTCTCTTCTTCAATA 57.047 37.500 0.00 0.00 0.00 1.90
2831 9248 7.516450 TCTTTTCCCCTCTCTTCTTCAATAT 57.484 36.000 0.00 0.00 0.00 1.28
2832 9249 8.624019 TCTTTTCCCCTCTCTTCTTCAATATA 57.376 34.615 0.00 0.00 0.00 0.86
2833 9250 9.230477 TCTTTTCCCCTCTCTTCTTCAATATAT 57.770 33.333 0.00 0.00 0.00 0.86
2834 9251 9.282569 CTTTTCCCCTCTCTTCTTCAATATATG 57.717 37.037 0.00 0.00 0.00 1.78
2835 9252 8.567198 TTTCCCCTCTCTTCTTCAATATATGA 57.433 34.615 0.00 0.00 35.85 2.15
2836 9253 8.748179 TTCCCCTCTCTTCTTCAATATATGAT 57.252 34.615 0.00 0.00 38.03 2.45
2837 9254 9.843704 TTCCCCTCTCTTCTTCAATATATGATA 57.156 33.333 0.00 0.00 38.03 2.15
2838 9255 9.261035 TCCCCTCTCTTCTTCAATATATGATAC 57.739 37.037 0.00 0.00 38.03 2.24
2839 9256 8.194104 CCCCTCTCTTCTTCAATATATGATACG 58.806 40.741 0.00 0.00 38.03 3.06
2840 9257 7.704472 CCCTCTCTTCTTCAATATATGATACGC 59.296 40.741 0.00 0.00 38.03 4.42
2841 9258 8.246871 CCTCTCTTCTTCAATATATGATACGCA 58.753 37.037 0.00 0.00 38.03 5.24
2842 9259 9.800433 CTCTCTTCTTCAATATATGATACGCAT 57.200 33.333 0.00 0.00 38.03 4.73
2847 9264 9.503427 TTCTTCAATATATGATACGCATACTCG 57.497 33.333 0.00 0.00 42.01 4.18
2848 9265 8.674607 TCTTCAATATATGATACGCATACTCGT 58.325 33.333 0.00 0.00 42.01 4.18
2849 9266 8.614994 TTCAATATATGATACGCATACTCGTG 57.385 34.615 0.00 0.00 42.01 4.35
2850 9267 6.691388 TCAATATATGATACGCATACTCGTGC 59.309 38.462 0.00 0.00 42.01 5.34
2859 9276 3.489563 GCATACTCGTGCGTATTCAAG 57.510 47.619 0.00 0.00 35.10 3.02
2860 9277 3.113322 GCATACTCGTGCGTATTCAAGA 58.887 45.455 0.00 0.00 35.10 3.02
2861 9278 3.550275 GCATACTCGTGCGTATTCAAGAA 59.450 43.478 0.00 0.00 35.10 2.52
2862 9279 4.032445 GCATACTCGTGCGTATTCAAGAAA 59.968 41.667 0.00 0.00 35.10 2.52
2863 9280 5.445407 GCATACTCGTGCGTATTCAAGAAAA 60.445 40.000 0.00 0.00 35.10 2.29
2864 9281 6.530567 CATACTCGTGCGTATTCAAGAAAAA 58.469 36.000 0.00 0.00 0.00 1.94
2887 9304 6.803154 AAAATAGTAGTGTGTCTCCTTTGC 57.197 37.500 0.00 0.00 0.00 3.68
2888 9305 2.841442 AGTAGTGTGTCTCCTTTGCC 57.159 50.000 0.00 0.00 0.00 4.52
2889 9306 1.000955 AGTAGTGTGTCTCCTTTGCCG 59.999 52.381 0.00 0.00 0.00 5.69
2890 9307 0.320421 TAGTGTGTCTCCTTTGCCGC 60.320 55.000 0.00 0.00 0.00 6.53
2891 9308 1.598130 GTGTGTCTCCTTTGCCGCT 60.598 57.895 0.00 0.00 0.00 5.52
2892 9309 1.301716 TGTGTCTCCTTTGCCGCTC 60.302 57.895 0.00 0.00 0.00 5.03
2893 9310 1.004440 GTGTCTCCTTTGCCGCTCT 60.004 57.895 0.00 0.00 0.00 4.09
2894 9311 1.016653 GTGTCTCCTTTGCCGCTCTC 61.017 60.000 0.00 0.00 0.00 3.20
2895 9312 1.293498 GTCTCCTTTGCCGCTCTCA 59.707 57.895 0.00 0.00 0.00 3.27
2896 9313 0.320771 GTCTCCTTTGCCGCTCTCAA 60.321 55.000 0.00 0.00 0.00 3.02
2897 9314 0.396435 TCTCCTTTGCCGCTCTCAAA 59.604 50.000 0.00 0.00 33.04 2.69
2898 9315 0.801251 CTCCTTTGCCGCTCTCAAAG 59.199 55.000 12.40 12.40 45.96 2.77
2905 9322 5.446143 TTTGCCGCTCTCAAAGAAAATAA 57.554 34.783 0.00 0.00 0.00 1.40
2906 9323 5.643379 TTGCCGCTCTCAAAGAAAATAAT 57.357 34.783 0.00 0.00 0.00 1.28
2907 9324 6.751514 TTGCCGCTCTCAAAGAAAATAATA 57.248 33.333 0.00 0.00 0.00 0.98
2908 9325 6.363577 TGCCGCTCTCAAAGAAAATAATAG 57.636 37.500 0.00 0.00 0.00 1.73
2909 9326 5.296780 TGCCGCTCTCAAAGAAAATAATAGG 59.703 40.000 0.00 0.00 0.00 2.57
2910 9327 5.278022 GCCGCTCTCAAAGAAAATAATAGGG 60.278 44.000 0.00 0.00 0.00 3.53
2911 9328 5.823045 CCGCTCTCAAAGAAAATAATAGGGT 59.177 40.000 0.00 0.00 0.00 4.34
2912 9329 6.318900 CCGCTCTCAAAGAAAATAATAGGGTT 59.681 38.462 0.00 0.00 0.00 4.11
2913 9330 7.189512 CGCTCTCAAAGAAAATAATAGGGTTG 58.810 38.462 0.00 0.00 0.00 3.77
2914 9331 7.148239 CGCTCTCAAAGAAAATAATAGGGTTGT 60.148 37.037 0.00 0.00 0.00 3.32
2915 9332 8.184848 GCTCTCAAAGAAAATAATAGGGTTGTC 58.815 37.037 0.00 0.00 0.00 3.18
2916 9333 8.263940 TCTCAAAGAAAATAATAGGGTTGTCG 57.736 34.615 0.00 0.00 0.00 4.35
2917 9334 7.881232 TCTCAAAGAAAATAATAGGGTTGTCGT 59.119 33.333 0.00 0.00 0.00 4.34
2918 9335 8.398878 TCAAAGAAAATAATAGGGTTGTCGTT 57.601 30.769 0.00 0.00 0.00 3.85
2919 9336 8.293867 TCAAAGAAAATAATAGGGTTGTCGTTG 58.706 33.333 0.00 0.00 0.00 4.10
2920 9337 6.753107 AGAAAATAATAGGGTTGTCGTTGG 57.247 37.500 0.00 0.00 0.00 3.77
2921 9338 6.243148 AGAAAATAATAGGGTTGTCGTTGGT 58.757 36.000 0.00 0.00 0.00 3.67
2922 9339 6.373495 AGAAAATAATAGGGTTGTCGTTGGTC 59.627 38.462 0.00 0.00 0.00 4.02
2923 9340 2.088950 AATAGGGTTGTCGTTGGTCG 57.911 50.000 0.00 0.00 41.41 4.79
2924 9341 0.248289 ATAGGGTTGTCGTTGGTCGG 59.752 55.000 0.00 0.00 40.32 4.79
2925 9342 0.827089 TAGGGTTGTCGTTGGTCGGA 60.827 55.000 0.00 0.00 40.32 4.55
2926 9343 1.957695 GGGTTGTCGTTGGTCGGAC 60.958 63.158 0.00 0.00 40.32 4.79
2927 9344 1.227321 GGTTGTCGTTGGTCGGACA 60.227 57.895 10.76 0.00 40.32 4.02
2928 9345 0.601841 GGTTGTCGTTGGTCGGACAT 60.602 55.000 10.76 0.00 40.32 3.06
2929 9346 1.337074 GGTTGTCGTTGGTCGGACATA 60.337 52.381 10.76 0.00 40.32 2.29
2930 9347 2.406130 GTTGTCGTTGGTCGGACATAA 58.594 47.619 10.76 1.81 40.32 1.90
2931 9348 2.801679 GTTGTCGTTGGTCGGACATAAA 59.198 45.455 10.76 0.00 40.32 1.40
2932 9349 3.322211 TGTCGTTGGTCGGACATAAAT 57.678 42.857 10.76 0.00 40.32 1.40
2933 9350 4.453177 TGTCGTTGGTCGGACATAAATA 57.547 40.909 10.76 0.00 40.32 1.40
2934 9351 4.426416 TGTCGTTGGTCGGACATAAATAG 58.574 43.478 10.76 1.29 40.32 1.73
2935 9352 4.158209 TGTCGTTGGTCGGACATAAATAGA 59.842 41.667 10.76 3.34 40.32 1.98
2936 9353 5.163488 TGTCGTTGGTCGGACATAAATAGAT 60.163 40.000 10.76 0.00 40.32 1.98
2937 9354 5.751990 GTCGTTGGTCGGACATAAATAGATT 59.248 40.000 10.76 0.00 40.32 2.40
2938 9355 5.751509 TCGTTGGTCGGACATAAATAGATTG 59.248 40.000 10.76 0.00 40.32 2.67
2939 9356 5.558273 CGTTGGTCGGACATAAATAGATTGC 60.558 44.000 10.76 0.00 35.71 3.56
2940 9357 5.029807 TGGTCGGACATAAATAGATTGCA 57.970 39.130 10.76 0.00 0.00 4.08
2941 9358 5.620206 TGGTCGGACATAAATAGATTGCAT 58.380 37.500 10.76 0.00 0.00 3.96
2942 9359 5.700832 TGGTCGGACATAAATAGATTGCATC 59.299 40.000 10.76 0.00 0.00 3.91
2943 9360 5.934625 GGTCGGACATAAATAGATTGCATCT 59.065 40.000 10.76 0.00 43.33 2.90
2944 9361 7.097192 GGTCGGACATAAATAGATTGCATCTA 58.903 38.462 10.76 7.89 45.23 1.98
2945 9362 7.063544 GGTCGGACATAAATAGATTGCATCTAC 59.936 40.741 10.76 0.00 44.07 2.59
2946 9363 6.806739 TCGGACATAAATAGATTGCATCTACG 59.193 38.462 7.69 5.62 44.07 3.51
2947 9364 6.454318 CGGACATAAATAGATTGCATCTACGC 60.454 42.308 7.69 0.00 44.07 4.42
2948 9365 6.368791 GGACATAAATAGATTGCATCTACGCA 59.631 38.462 7.69 0.00 44.07 5.24
2949 9366 7.065085 GGACATAAATAGATTGCATCTACGCAT 59.935 37.037 7.69 0.00 44.07 4.73
2950 9367 7.745972 ACATAAATAGATTGCATCTACGCATG 58.254 34.615 7.69 11.35 44.07 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.075005 TAGACCAGCCCCGCAGAC 61.075 66.667 0.00 0.00 0.00 3.51
3 4 2.589610 ATCTAGACCAGCCCCGCAGA 62.590 60.000 0.00 0.00 0.00 4.26
4 5 2.093537 GATCTAGACCAGCCCCGCAG 62.094 65.000 0.00 0.00 0.00 5.18
7 8 2.210711 GGGATCTAGACCAGCCCCG 61.211 68.421 11.82 0.00 32.50 5.73
10 11 2.737830 GCGGGATCTAGACCAGCC 59.262 66.667 18.70 8.90 41.38 4.85
11 12 2.093537 CTGGCGGGATCTAGACCAGC 62.094 65.000 20.21 20.21 45.16 4.85
12 13 2.045280 CTGGCGGGATCTAGACCAG 58.955 63.158 10.91 10.91 41.78 4.00
13 14 0.755698 GTCTGGCGGGATCTAGACCA 60.756 60.000 11.82 6.34 34.84 4.02
40 3661 0.250727 CCACAACCATCAGTTCCCGT 60.251 55.000 0.00 0.00 36.18 5.28
46 3667 2.034066 CCGGCCACAACCATCAGT 59.966 61.111 2.24 0.00 0.00 3.41
72 3693 4.942852 TGTTCCAAGTTTTACTGCCATTG 58.057 39.130 0.00 0.00 0.00 2.82
159 3780 8.208718 TGGTTGCAAGATATAATACACTTGTC 57.791 34.615 0.00 0.00 40.88 3.18
173 3794 2.393768 CGCTCGCTGGTTGCAAGAT 61.394 57.895 0.00 0.00 43.06 2.40
253 3874 9.856488 GTAGTTTAATCTCGCATGAGGATATAA 57.144 33.333 0.00 0.00 42.79 0.98
255 3876 8.128322 AGTAGTTTAATCTCGCATGAGGATAT 57.872 34.615 0.00 0.00 42.79 1.63
259 3880 6.709643 CAAAGTAGTTTAATCTCGCATGAGG 58.290 40.000 0.00 0.00 42.79 3.86
285 3906 2.721090 GCTGCTCAATTGTTTCGTGTTC 59.279 45.455 5.13 0.00 0.00 3.18
308 3930 2.808206 CCATCTACCGGACCTGCCC 61.808 68.421 9.46 0.00 0.00 5.36
386 4008 3.134804 CCACTATCATCTCCCCTTCGTTT 59.865 47.826 0.00 0.00 0.00 3.60
487 4295 2.089201 TCGGATGTCTTCTTCTGCGTA 58.911 47.619 0.00 0.00 0.00 4.42
489 4297 2.123342 GATCGGATGTCTTCTTCTGCG 58.877 52.381 0.00 0.00 0.00 5.18
501 4309 4.431809 GAGAGCATATTCTGGATCGGATG 58.568 47.826 0.00 0.00 0.00 3.51
539 4347 0.736325 AGTTAGACACGGACGCATGC 60.736 55.000 7.91 7.91 0.00 4.06
586 4394 4.261781 TTGCATGCACGCAACGCA 62.262 55.556 22.58 13.58 46.61 5.24
626 4434 1.482955 CACTGTTCGTGCGAAGACG 59.517 57.895 7.31 3.91 40.83 4.18
757 4568 1.673009 CGGTGGGCGGTACACATTT 60.673 57.895 0.00 0.00 40.54 2.32
769 4580 3.879885 TGGTGGTTGGACGGTGGG 61.880 66.667 0.00 0.00 0.00 4.61
775 4586 2.668550 GAGCGGTGGTGGTTGGAC 60.669 66.667 0.00 0.00 0.00 4.02
820 4631 0.616395 TTGACGCTGGGGTCTCCATA 60.616 55.000 16.48 0.00 46.01 2.74
870 4697 3.072944 GCTTGGATAAGATGGCTAGCTG 58.927 50.000 15.72 0.00 35.92 4.24
948 4778 3.372206 GTGGCTAGTGTGATGTGATTGAC 59.628 47.826 0.00 0.00 0.00 3.18
951 4781 3.988976 AGTGGCTAGTGTGATGTGATT 57.011 42.857 0.00 0.00 0.00 2.57
952 4782 4.281657 TCTAGTGGCTAGTGTGATGTGAT 58.718 43.478 3.48 0.00 35.72 3.06
953 4783 3.697166 TCTAGTGGCTAGTGTGATGTGA 58.303 45.455 3.48 0.00 35.72 3.58
954 4784 4.428209 CTTCTAGTGGCTAGTGTGATGTG 58.572 47.826 3.48 0.00 35.72 3.21
955 4785 3.118956 GCTTCTAGTGGCTAGTGTGATGT 60.119 47.826 3.48 0.00 35.72 3.06
982 4827 2.354259 CATGCTTGACACCCTCTTCTC 58.646 52.381 0.00 0.00 0.00 2.87
1141 5014 3.423571 CAGCAAAGCAAGATTCTTAGCG 58.576 45.455 0.00 0.00 0.00 4.26
1189 5062 3.304928 CCTCTGCATGGACAGAAAAACAC 60.305 47.826 4.82 0.00 45.72 3.32
1324 5273 3.706373 CCTCCACCGTGTCCTGGG 61.706 72.222 0.00 0.00 0.00 4.45
1838 6229 2.202236 AATGACATCCACTGCCGCCT 62.202 55.000 0.00 0.00 0.00 5.52
1872 6263 2.824041 GCAGCCATGGTACCCGTG 60.824 66.667 14.67 8.42 40.02 4.94
1913 6304 2.064581 GTACATGGGCTCCGGGACT 61.065 63.158 0.00 0.00 0.00 3.85
1962 6353 3.826236 CGTAGGTACGTATAGCTGCAT 57.174 47.619 1.02 0.00 44.13 3.96
1997 6396 2.542178 GTGTGCAGAACAACATCACGTA 59.458 45.455 0.00 0.00 41.57 3.57
1998 6397 1.330521 GTGTGCAGAACAACATCACGT 59.669 47.619 0.00 0.00 41.57 4.49
1999 6398 1.657260 CGTGTGCAGAACAACATCACG 60.657 52.381 6.35 6.35 41.57 4.35
2004 6403 0.924777 CGTACGTGTGCAGAACAACA 59.075 50.000 7.22 0.00 41.57 3.33
2009 6408 5.122239 ACTTACTATACGTACGTGTGCAGAA 59.878 40.000 30.25 15.24 30.30 3.02
2015 6414 5.327091 CAGCAACTTACTATACGTACGTGT 58.673 41.667 30.25 25.72 31.69 4.49
2017 6416 4.396166 ACCAGCAACTTACTATACGTACGT 59.604 41.667 25.98 25.98 32.53 3.57
2018 6417 4.913376 ACCAGCAACTTACTATACGTACG 58.087 43.478 15.01 15.01 0.00 3.67
2019 6418 8.862550 ATTTACCAGCAACTTACTATACGTAC 57.137 34.615 0.00 0.00 0.00 3.67
2089 6488 6.695245 CGGTATACGTACGCACTTTATTTTT 58.305 36.000 16.72 0.00 37.93 1.94
2090 6489 6.259743 CGGTATACGTACGCACTTTATTTT 57.740 37.500 16.72 0.00 37.93 1.82
2091 6490 5.871531 CGGTATACGTACGCACTTTATTT 57.128 39.130 16.72 0.00 37.93 1.40
2148 6555 2.350522 GCGTGTGTTCTCCAAGATCAT 58.649 47.619 0.00 0.00 0.00 2.45
2166 6576 0.320374 TACAAGAACACAGAGGGGCG 59.680 55.000 0.00 0.00 0.00 6.13
2167 6577 2.290323 ACATACAAGAACACAGAGGGGC 60.290 50.000 0.00 0.00 0.00 5.80
2209 6627 9.071276 GGAATTTGATACATACATGGAGAACAT 57.929 33.333 0.00 0.00 41.57 2.71
2231 6654 9.881773 ATATTCCCATAACTGTAAACATGGAAT 57.118 29.630 0.00 0.00 40.37 3.01
2244 6667 9.881773 ATTCCACAATAACATATTCCCATAACT 57.118 29.630 0.00 0.00 0.00 2.24
2278 6701 8.639761 GTGTAGAACTTTGGCTATATTCCTCTA 58.360 37.037 0.00 0.00 0.00 2.43
2307 6730 5.354234 CGGCATACAGAAGGAATTAAGTGTT 59.646 40.000 0.00 0.00 0.00 3.32
2308 6731 4.876107 CGGCATACAGAAGGAATTAAGTGT 59.124 41.667 0.00 0.00 0.00 3.55
2404 8137 3.500343 CCCCTGGTTGAAGTCTTTTGAT 58.500 45.455 0.00 0.00 0.00 2.57
2406 8139 1.341209 GCCCCTGGTTGAAGTCTTTTG 59.659 52.381 0.00 0.00 0.00 2.44
2407 8140 1.063266 TGCCCCTGGTTGAAGTCTTTT 60.063 47.619 0.00 0.00 0.00 2.27
2478 8895 9.386010 TGCGATGGTAGTTTATGTTATACTTTT 57.614 29.630 0.00 0.00 0.00 2.27
2492 8909 6.385649 TTTTCTTTTCTTGCGATGGTAGTT 57.614 33.333 0.00 0.00 0.00 2.24
2493 8910 5.562890 GCTTTTCTTTTCTTGCGATGGTAGT 60.563 40.000 0.00 0.00 0.00 2.73
2494 8911 4.853743 GCTTTTCTTTTCTTGCGATGGTAG 59.146 41.667 0.00 0.00 0.00 3.18
2495 8912 4.518970 AGCTTTTCTTTTCTTGCGATGGTA 59.481 37.500 0.00 0.00 0.00 3.25
2498 8915 7.750458 TGTTATAGCTTTTCTTTTCTTGCGATG 59.250 33.333 0.00 0.00 0.00 3.84
2501 8918 9.554724 TTATGTTATAGCTTTTCTTTTCTTGCG 57.445 29.630 0.00 0.00 0.00 4.85
2511 8928 8.488764 CGCCTCTAGTTTATGTTATAGCTTTTC 58.511 37.037 0.00 0.00 0.00 2.29
2513 8930 7.498443 ACGCCTCTAGTTTATGTTATAGCTTT 58.502 34.615 0.00 0.00 0.00 3.51
2514 8931 7.052142 ACGCCTCTAGTTTATGTTATAGCTT 57.948 36.000 0.00 0.00 0.00 3.74
2515 8932 6.651975 ACGCCTCTAGTTTATGTTATAGCT 57.348 37.500 0.00 0.00 0.00 3.32
2541 8958 7.930325 CACATGATCAGGAGACACATTACTATT 59.070 37.037 15.42 0.00 0.00 1.73
2542 8959 7.440198 CACATGATCAGGAGACACATTACTAT 58.560 38.462 15.42 0.00 0.00 2.12
2543 8960 6.183360 CCACATGATCAGGAGACACATTACTA 60.183 42.308 15.42 0.00 0.00 1.82
2544 8961 5.396101 CCACATGATCAGGAGACACATTACT 60.396 44.000 15.42 0.00 0.00 2.24
2545 8962 4.813161 CCACATGATCAGGAGACACATTAC 59.187 45.833 15.42 0.00 0.00 1.89
2546 8963 4.141642 CCCACATGATCAGGAGACACATTA 60.142 45.833 15.42 0.00 0.00 1.90
2548 8965 2.172082 CCCACATGATCAGGAGACACAT 59.828 50.000 15.42 0.00 0.00 3.21
2549 8966 1.556451 CCCACATGATCAGGAGACACA 59.444 52.381 15.42 0.00 0.00 3.72
2550 8967 1.833630 TCCCACATGATCAGGAGACAC 59.166 52.381 15.42 0.00 0.00 3.67
2551 8968 2.252535 TCCCACATGATCAGGAGACA 57.747 50.000 15.42 0.00 0.00 3.41
2555 8972 2.026915 CACAACTCCCACATGATCAGGA 60.027 50.000 15.42 7.81 0.00 3.86
2556 8973 2.362736 CACAACTCCCACATGATCAGG 58.637 52.381 5.68 5.68 0.00 3.86
2557 8974 2.026915 TCCACAACTCCCACATGATCAG 60.027 50.000 0.00 0.00 0.00 2.90
2558 8975 1.984424 TCCACAACTCCCACATGATCA 59.016 47.619 0.00 0.00 0.00 2.92
2559 8976 2.787473 TCCACAACTCCCACATGATC 57.213 50.000 0.00 0.00 0.00 2.92
2560 8977 3.157087 GTTTCCACAACTCCCACATGAT 58.843 45.455 0.00 0.00 0.00 2.45
2561 8978 2.092158 TGTTTCCACAACTCCCACATGA 60.092 45.455 0.00 0.00 0.00 3.07
2562 8979 2.034558 GTGTTTCCACAACTCCCACATG 59.965 50.000 0.00 0.00 41.44 3.21
2563 8980 2.306847 GTGTTTCCACAACTCCCACAT 58.693 47.619 0.00 0.00 41.44 3.21
2564 8981 1.757682 GTGTTTCCACAACTCCCACA 58.242 50.000 0.00 0.00 41.44 4.17
2574 8991 4.023193 ACAATCGAATTCCTGTGTTTCCAC 60.023 41.667 0.00 0.00 42.19 4.02
2575 8992 4.023279 CACAATCGAATTCCTGTGTTTCCA 60.023 41.667 16.39 0.00 35.52 3.53
2576 8993 4.475944 CACAATCGAATTCCTGTGTTTCC 58.524 43.478 16.39 0.00 35.52 3.13
2581 8998 5.107109 TCAAACACAATCGAATTCCTGTG 57.893 39.130 20.35 20.35 43.81 3.66
2582 8999 4.216257 CCTCAAACACAATCGAATTCCTGT 59.784 41.667 0.00 0.00 0.00 4.00
2583 9000 4.379813 CCCTCAAACACAATCGAATTCCTG 60.380 45.833 0.00 0.00 0.00 3.86
2584 9001 3.758554 CCCTCAAACACAATCGAATTCCT 59.241 43.478 0.00 0.00 0.00 3.36
2585 9002 3.119495 CCCCTCAAACACAATCGAATTCC 60.119 47.826 0.00 0.00 0.00 3.01
2586 9003 3.756434 TCCCCTCAAACACAATCGAATTC 59.244 43.478 0.00 0.00 0.00 2.17
2587 9004 3.761897 TCCCCTCAAACACAATCGAATT 58.238 40.909 0.00 0.00 0.00 2.17
2588 9005 3.433306 TCCCCTCAAACACAATCGAAT 57.567 42.857 0.00 0.00 0.00 3.34
2589 9006 2.940994 TCCCCTCAAACACAATCGAA 57.059 45.000 0.00 0.00 0.00 3.71
2590 9007 2.304470 TCATCCCCTCAAACACAATCGA 59.696 45.455 0.00 0.00 0.00 3.59
2591 9008 2.420022 GTCATCCCCTCAAACACAATCG 59.580 50.000 0.00 0.00 0.00 3.34
2592 9009 3.191371 GTGTCATCCCCTCAAACACAATC 59.809 47.826 0.00 0.00 39.91 2.67
2593 9010 3.157087 GTGTCATCCCCTCAAACACAAT 58.843 45.455 0.00 0.00 39.91 2.71
2594 9011 2.582052 GTGTCATCCCCTCAAACACAA 58.418 47.619 0.00 0.00 39.91 3.33
2595 9012 1.202879 GGTGTCATCCCCTCAAACACA 60.203 52.381 6.31 0.00 41.49 3.72
2596 9013 1.534729 GGTGTCATCCCCTCAAACAC 58.465 55.000 0.00 0.00 39.53 3.32
2597 9014 0.036164 CGGTGTCATCCCCTCAAACA 59.964 55.000 0.00 0.00 0.00 2.83
2598 9015 0.676782 CCGGTGTCATCCCCTCAAAC 60.677 60.000 0.00 0.00 0.00 2.93
2599 9016 0.838554 TCCGGTGTCATCCCCTCAAA 60.839 55.000 0.00 0.00 0.00 2.69
2600 9017 1.229368 TCCGGTGTCATCCCCTCAA 60.229 57.895 0.00 0.00 0.00 3.02
2601 9018 1.987855 GTCCGGTGTCATCCCCTCA 60.988 63.158 0.00 0.00 0.00 3.86
2602 9019 2.901042 GTCCGGTGTCATCCCCTC 59.099 66.667 0.00 0.00 0.00 4.30
2603 9020 3.075005 CGTCCGGTGTCATCCCCT 61.075 66.667 0.00 0.00 0.00 4.79
2604 9021 3.387947 ACGTCCGGTGTCATCCCC 61.388 66.667 0.00 0.00 0.00 4.81
2605 9022 2.125673 CACGTCCGGTGTCATCCC 60.126 66.667 0.00 0.00 41.89 3.85
2613 9030 2.599578 AGTACCTGCACGTCCGGT 60.600 61.111 0.00 0.00 34.86 5.28
2614 9031 2.181021 GAGTACCTGCACGTCCGG 59.819 66.667 0.00 0.00 0.00 5.14
2615 9032 2.181021 GGAGTACCTGCACGTCCG 59.819 66.667 0.00 0.00 0.00 4.79
2616 9033 3.198309 CGTAGGAGTACCTGCACGTCC 62.198 61.905 0.00 0.00 46.80 4.79
2617 9034 0.098376 CGTAGGAGTACCTGCACGTC 59.902 60.000 0.00 0.00 46.80 4.34
2618 9035 2.177950 CGTAGGAGTACCTGCACGT 58.822 57.895 0.00 0.00 46.80 4.49
2636 9053 1.300481 GCACTCGGAGGCTATTTTCC 58.700 55.000 10.23 0.00 0.00 3.13
2637 9054 0.931005 CGCACTCGGAGGCTATTTTC 59.069 55.000 10.23 0.00 0.00 2.29
2638 9055 1.090052 GCGCACTCGGAGGCTATTTT 61.090 55.000 10.23 0.00 35.95 1.82
2639 9056 1.521681 GCGCACTCGGAGGCTATTT 60.522 57.895 10.23 0.00 35.95 1.40
2640 9057 2.107141 GCGCACTCGGAGGCTATT 59.893 61.111 10.23 0.00 35.95 1.73
2641 9058 4.271816 CGCGCACTCGGAGGCTAT 62.272 66.667 8.75 0.00 35.95 2.97
2665 9082 4.832608 AACGATCCCGGCCTTCGC 62.833 66.667 15.91 0.00 40.78 4.70
2666 9083 2.585247 GAACGATCCCGGCCTTCG 60.585 66.667 14.81 14.81 40.78 3.79
2667 9084 0.391597 TATGAACGATCCCGGCCTTC 59.608 55.000 0.00 0.00 40.78 3.46
2668 9085 0.393077 CTATGAACGATCCCGGCCTT 59.607 55.000 0.00 0.00 40.78 4.35
2669 9086 0.759436 ACTATGAACGATCCCGGCCT 60.759 55.000 0.00 0.00 40.78 5.19
2670 9087 0.600255 CACTATGAACGATCCCGGCC 60.600 60.000 0.00 0.00 40.78 6.13
2671 9088 0.387929 TCACTATGAACGATCCCGGC 59.612 55.000 0.00 0.00 40.78 6.13
2672 9089 3.386768 AATCACTATGAACGATCCCGG 57.613 47.619 0.00 0.00 40.78 5.73
2673 9090 3.425525 CGAAATCACTATGAACGATCCCG 59.574 47.826 0.00 0.00 42.50 5.14
2674 9091 4.617959 TCGAAATCACTATGAACGATCCC 58.382 43.478 0.00 0.00 30.57 3.85
2675 9092 4.149046 GCTCGAAATCACTATGAACGATCC 59.851 45.833 0.00 0.00 33.23 3.36
2676 9093 4.149046 GGCTCGAAATCACTATGAACGATC 59.851 45.833 0.00 0.00 33.23 3.69
2677 9094 4.051922 GGCTCGAAATCACTATGAACGAT 58.948 43.478 0.00 0.00 33.23 3.73
2678 9095 3.119280 TGGCTCGAAATCACTATGAACGA 60.119 43.478 0.00 0.00 32.91 3.85
2679 9096 3.186909 TGGCTCGAAATCACTATGAACG 58.813 45.455 0.00 0.00 0.00 3.95
2680 9097 5.504665 CCAATGGCTCGAAATCACTATGAAC 60.505 44.000 0.00 0.00 0.00 3.18
2681 9098 4.576053 CCAATGGCTCGAAATCACTATGAA 59.424 41.667 0.00 0.00 0.00 2.57
2682 9099 4.129380 CCAATGGCTCGAAATCACTATGA 58.871 43.478 0.00 0.00 0.00 2.15
2683 9100 3.304257 GCCAATGGCTCGAAATCACTATG 60.304 47.826 18.47 0.00 46.69 2.23
2684 9101 2.880890 GCCAATGGCTCGAAATCACTAT 59.119 45.455 18.47 0.00 46.69 2.12
2685 9102 2.288666 GCCAATGGCTCGAAATCACTA 58.711 47.619 18.47 0.00 46.69 2.74
2686 9103 1.098050 GCCAATGGCTCGAAATCACT 58.902 50.000 18.47 0.00 46.69 3.41
2687 9104 3.629858 GCCAATGGCTCGAAATCAC 57.370 52.632 18.47 0.00 46.69 3.06
2698 9115 1.601759 CTATCTGGGCCGCCAATGG 60.602 63.158 12.58 0.00 0.00 3.16
2699 9116 1.601759 CCTATCTGGGCCGCCAATG 60.602 63.158 12.58 0.24 0.00 2.82
2700 9117 2.078665 ACCTATCTGGGCCGCCAAT 61.079 57.895 12.58 4.12 41.11 3.16
2701 9118 2.690881 ACCTATCTGGGCCGCCAA 60.691 61.111 12.58 0.00 41.11 4.52
2702 9119 3.479203 CACCTATCTGGGCCGCCA 61.479 66.667 12.58 0.00 41.11 5.69
2703 9120 3.480133 ACACCTATCTGGGCCGCC 61.480 66.667 0.00 0.00 41.11 6.13
2704 9121 2.203070 CACACCTATCTGGGCCGC 60.203 66.667 0.00 0.00 41.11 6.53
2705 9122 1.153369 CACACACCTATCTGGGCCG 60.153 63.158 0.00 0.00 41.11 6.13
2706 9123 1.224592 CCACACACCTATCTGGGCC 59.775 63.158 0.00 0.00 41.11 5.80
2707 9124 1.224592 CCCACACACCTATCTGGGC 59.775 63.158 0.00 0.00 37.13 5.36
2708 9125 1.224592 GCCCACACACCTATCTGGG 59.775 63.158 0.00 0.00 45.65 4.45
2709 9126 0.107508 CTGCCCACACACCTATCTGG 60.108 60.000 0.00 0.00 42.93 3.86
2710 9127 0.745845 GCTGCCCACACACCTATCTG 60.746 60.000 0.00 0.00 0.00 2.90
2711 9128 0.911525 AGCTGCCCACACACCTATCT 60.912 55.000 0.00 0.00 0.00 1.98
2712 9129 0.830648 TAGCTGCCCACACACCTATC 59.169 55.000 0.00 0.00 0.00 2.08
2713 9130 0.833287 CTAGCTGCCCACACACCTAT 59.167 55.000 0.00 0.00 0.00 2.57
2714 9131 1.264749 CCTAGCTGCCCACACACCTA 61.265 60.000 0.00 0.00 0.00 3.08
2715 9132 2.596851 CCTAGCTGCCCACACACCT 61.597 63.158 0.00 0.00 0.00 4.00
2716 9133 2.045926 CCTAGCTGCCCACACACC 60.046 66.667 0.00 0.00 0.00 4.16
2717 9134 2.045926 CCCTAGCTGCCCACACAC 60.046 66.667 0.00 0.00 0.00 3.82
2718 9135 2.203922 TCCCTAGCTGCCCACACA 60.204 61.111 0.00 0.00 0.00 3.72
2719 9136 0.976073 TACTCCCTAGCTGCCCACAC 60.976 60.000 0.00 0.00 0.00 3.82
2720 9137 0.687757 CTACTCCCTAGCTGCCCACA 60.688 60.000 0.00 0.00 0.00 4.17
2721 9138 0.688087 ACTACTCCCTAGCTGCCCAC 60.688 60.000 0.00 0.00 0.00 4.61
2722 9139 0.397254 GACTACTCCCTAGCTGCCCA 60.397 60.000 0.00 0.00 0.00 5.36
2723 9140 1.116536 GGACTACTCCCTAGCTGCCC 61.117 65.000 0.00 0.00 0.00 5.36
2724 9141 0.397254 TGGACTACTCCCTAGCTGCC 60.397 60.000 0.00 0.00 35.34 4.85
2725 9142 1.342819 CATGGACTACTCCCTAGCTGC 59.657 57.143 0.00 0.00 35.34 5.25
2726 9143 2.672098 ACATGGACTACTCCCTAGCTG 58.328 52.381 0.00 0.00 35.34 4.24
2727 9144 4.537945 TTACATGGACTACTCCCTAGCT 57.462 45.455 0.00 0.00 35.34 3.32
2728 9145 5.540719 AGAATTACATGGACTACTCCCTAGC 59.459 44.000 0.00 0.00 35.34 3.42
2729 9146 7.522399 CGAAGAATTACATGGACTACTCCCTAG 60.522 44.444 0.00 0.00 35.34 3.02
2730 9147 6.264744 CGAAGAATTACATGGACTACTCCCTA 59.735 42.308 0.00 0.00 35.34 3.53
2731 9148 5.069251 CGAAGAATTACATGGACTACTCCCT 59.931 44.000 0.00 0.00 35.34 4.20
2732 9149 5.290386 CGAAGAATTACATGGACTACTCCC 58.710 45.833 0.00 0.00 35.34 4.30
2733 9150 5.290386 CCGAAGAATTACATGGACTACTCC 58.710 45.833 0.00 0.00 37.04 3.85
2734 9151 5.163437 ACCCGAAGAATTACATGGACTACTC 60.163 44.000 0.00 0.00 0.00 2.59
2735 9152 4.715297 ACCCGAAGAATTACATGGACTACT 59.285 41.667 0.00 0.00 0.00 2.57
2736 9153 4.809426 CACCCGAAGAATTACATGGACTAC 59.191 45.833 0.00 0.00 0.00 2.73
2737 9154 4.141801 CCACCCGAAGAATTACATGGACTA 60.142 45.833 0.00 0.00 0.00 2.59
2738 9155 3.370527 CCACCCGAAGAATTACATGGACT 60.371 47.826 0.00 0.00 0.00 3.85
2739 9156 2.943033 CCACCCGAAGAATTACATGGAC 59.057 50.000 0.00 0.00 0.00 4.02
2740 9157 2.841266 TCCACCCGAAGAATTACATGGA 59.159 45.455 0.00 0.00 32.62 3.41
2741 9158 3.206150 CTCCACCCGAAGAATTACATGG 58.794 50.000 0.00 0.00 0.00 3.66
2742 9159 3.873910 ACTCCACCCGAAGAATTACATG 58.126 45.455 0.00 0.00 0.00 3.21
2743 9160 4.441079 CGTACTCCACCCGAAGAATTACAT 60.441 45.833 0.00 0.00 0.00 2.29
2744 9161 3.119388 CGTACTCCACCCGAAGAATTACA 60.119 47.826 0.00 0.00 0.00 2.41
2745 9162 3.119352 ACGTACTCCACCCGAAGAATTAC 60.119 47.826 0.00 0.00 0.00 1.89
2746 9163 3.091545 ACGTACTCCACCCGAAGAATTA 58.908 45.455 0.00 0.00 0.00 1.40
2747 9164 1.897802 ACGTACTCCACCCGAAGAATT 59.102 47.619 0.00 0.00 0.00 2.17
2748 9165 1.553706 ACGTACTCCACCCGAAGAAT 58.446 50.000 0.00 0.00 0.00 2.40
2749 9166 1.331214 AACGTACTCCACCCGAAGAA 58.669 50.000 0.00 0.00 0.00 2.52
2750 9167 1.000060 CAAACGTACTCCACCCGAAGA 60.000 52.381 0.00 0.00 0.00 2.87
2751 9168 1.425412 CAAACGTACTCCACCCGAAG 58.575 55.000 0.00 0.00 0.00 3.79
2752 9169 0.600782 GCAAACGTACTCCACCCGAA 60.601 55.000 0.00 0.00 0.00 4.30
2753 9170 1.005867 GCAAACGTACTCCACCCGA 60.006 57.895 0.00 0.00 0.00 5.14
2754 9171 0.601841 AAGCAAACGTACTCCACCCG 60.602 55.000 0.00 0.00 0.00 5.28
2755 9172 0.872388 CAAGCAAACGTACTCCACCC 59.128 55.000 0.00 0.00 0.00 4.61
2756 9173 1.263217 CACAAGCAAACGTACTCCACC 59.737 52.381 0.00 0.00 0.00 4.61
2757 9174 1.937899 ACACAAGCAAACGTACTCCAC 59.062 47.619 0.00 0.00 0.00 4.02
2758 9175 2.319136 ACACAAGCAAACGTACTCCA 57.681 45.000 0.00 0.00 0.00 3.86
2759 9176 4.521010 GTTTACACAAGCAAACGTACTCC 58.479 43.478 0.00 0.00 0.00 3.85
2766 9183 5.267776 ACATACACGTTTACACAAGCAAAC 58.732 37.500 0.00 0.00 0.00 2.93
2767 9184 5.487153 ACATACACGTTTACACAAGCAAA 57.513 34.783 0.00 0.00 0.00 3.68
2768 9185 6.600246 TTACATACACGTTTACACAAGCAA 57.400 33.333 0.00 0.00 0.00 3.91
2769 9186 6.258287 AGTTTACATACACGTTTACACAAGCA 59.742 34.615 0.00 0.00 0.00 3.91
2770 9187 6.572254 CAGTTTACATACACGTTTACACAAGC 59.428 38.462 0.00 0.00 0.00 4.01
2771 9188 7.581241 CACAGTTTACATACACGTTTACACAAG 59.419 37.037 0.00 0.00 0.00 3.16
2772 9189 7.400301 CACAGTTTACATACACGTTTACACAA 58.600 34.615 0.00 0.00 0.00 3.33
2773 9190 6.018913 CCACAGTTTACATACACGTTTACACA 60.019 38.462 0.00 0.00 0.00 3.72
2774 9191 6.200665 TCCACAGTTTACATACACGTTTACAC 59.799 38.462 0.00 0.00 0.00 2.90
2775 9192 6.279123 TCCACAGTTTACATACACGTTTACA 58.721 36.000 0.00 0.00 0.00 2.41
2776 9193 6.768029 TCCACAGTTTACATACACGTTTAC 57.232 37.500 0.00 0.00 0.00 2.01
2777 9194 6.369340 CCATCCACAGTTTACATACACGTTTA 59.631 38.462 0.00 0.00 0.00 2.01
2778 9195 5.180492 CCATCCACAGTTTACATACACGTTT 59.820 40.000 0.00 0.00 0.00 3.60
2779 9196 4.693566 CCATCCACAGTTTACATACACGTT 59.306 41.667 0.00 0.00 0.00 3.99
2780 9197 4.250464 CCATCCACAGTTTACATACACGT 58.750 43.478 0.00 0.00 0.00 4.49
2781 9198 3.621268 CCCATCCACAGTTTACATACACG 59.379 47.826 0.00 0.00 0.00 4.49
2782 9199 3.945285 CCCCATCCACAGTTTACATACAC 59.055 47.826 0.00 0.00 0.00 2.90
2783 9200 3.623703 GCCCCATCCACAGTTTACATACA 60.624 47.826 0.00 0.00 0.00 2.29
2784 9201 2.949644 GCCCCATCCACAGTTTACATAC 59.050 50.000 0.00 0.00 0.00 2.39
2785 9202 2.849943 AGCCCCATCCACAGTTTACATA 59.150 45.455 0.00 0.00 0.00 2.29
2786 9203 1.640670 AGCCCCATCCACAGTTTACAT 59.359 47.619 0.00 0.00 0.00 2.29
2787 9204 1.072266 AGCCCCATCCACAGTTTACA 58.928 50.000 0.00 0.00 0.00 2.41
2788 9205 2.092323 GAAGCCCCATCCACAGTTTAC 58.908 52.381 0.00 0.00 0.00 2.01
2789 9206 1.992557 AGAAGCCCCATCCACAGTTTA 59.007 47.619 0.00 0.00 0.00 2.01
2790 9207 0.779997 AGAAGCCCCATCCACAGTTT 59.220 50.000 0.00 0.00 0.00 2.66
2791 9208 0.779997 AAGAAGCCCCATCCACAGTT 59.220 50.000 0.00 0.00 0.00 3.16
2792 9209 0.779997 AAAGAAGCCCCATCCACAGT 59.220 50.000 0.00 0.00 0.00 3.55
2793 9210 1.821136 GAAAAGAAGCCCCATCCACAG 59.179 52.381 0.00 0.00 0.00 3.66
2794 9211 1.549950 GGAAAAGAAGCCCCATCCACA 60.550 52.381 0.00 0.00 0.00 4.17
2795 9212 1.186200 GGAAAAGAAGCCCCATCCAC 58.814 55.000 0.00 0.00 0.00 4.02
2796 9213 0.041090 GGGAAAAGAAGCCCCATCCA 59.959 55.000 0.00 0.00 39.89 3.41
2797 9214 2.901975 GGGAAAAGAAGCCCCATCC 58.098 57.895 0.00 0.00 39.89 3.51
2802 9219 0.995803 AGAGAGGGGAAAAGAAGCCC 59.004 55.000 0.00 0.00 43.91 5.19
2803 9220 2.307392 AGAAGAGAGGGGAAAAGAAGCC 59.693 50.000 0.00 0.00 0.00 4.35
2804 9221 3.712016 AGAAGAGAGGGGAAAAGAAGC 57.288 47.619 0.00 0.00 0.00 3.86
2805 9222 5.234466 TGAAGAAGAGAGGGGAAAAGAAG 57.766 43.478 0.00 0.00 0.00 2.85
2806 9223 5.646692 TTGAAGAAGAGAGGGGAAAAGAA 57.353 39.130 0.00 0.00 0.00 2.52
2807 9224 5.850046 ATTGAAGAAGAGAGGGGAAAAGA 57.150 39.130 0.00 0.00 0.00 2.52
2808 9225 9.282569 CATATATTGAAGAAGAGAGGGGAAAAG 57.717 37.037 0.00 0.00 0.00 2.27
2809 9226 9.003145 TCATATATTGAAGAAGAGAGGGGAAAA 57.997 33.333 0.00 0.00 0.00 2.29
2810 9227 8.567198 TCATATATTGAAGAAGAGAGGGGAAA 57.433 34.615 0.00 0.00 0.00 3.13
2811 9228 8.748179 ATCATATATTGAAGAAGAGAGGGGAA 57.252 34.615 0.00 0.00 38.03 3.97
2812 9229 9.261035 GTATCATATATTGAAGAAGAGAGGGGA 57.739 37.037 0.00 0.00 38.03 4.81
2813 9230 8.194104 CGTATCATATATTGAAGAAGAGAGGGG 58.806 40.741 0.00 0.00 38.03 4.79
2814 9231 7.704472 GCGTATCATATATTGAAGAAGAGAGGG 59.296 40.741 0.00 0.00 38.03 4.30
2815 9232 8.246871 TGCGTATCATATATTGAAGAAGAGAGG 58.753 37.037 0.00 0.00 38.03 3.69
2816 9233 9.800433 ATGCGTATCATATATTGAAGAAGAGAG 57.200 33.333 0.00 0.00 38.03 3.20
2821 9238 9.503427 CGAGTATGCGTATCATATATTGAAGAA 57.497 33.333 0.00 0.00 39.63 2.52
2822 9239 8.674607 ACGAGTATGCGTATCATATATTGAAGA 58.325 33.333 0.00 0.00 43.61 2.87
2823 9240 8.737648 CACGAGTATGCGTATCATATATTGAAG 58.262 37.037 0.00 0.00 43.59 3.02
2824 9241 7.220108 GCACGAGTATGCGTATCATATATTGAA 59.780 37.037 0.00 0.00 43.59 2.69
2825 9242 6.691388 GCACGAGTATGCGTATCATATATTGA 59.309 38.462 0.00 0.00 43.59 2.57
2826 9243 6.857026 GCACGAGTATGCGTATCATATATTG 58.143 40.000 0.00 0.00 43.59 1.90
2839 9256 3.113322 TCTTGAATACGCACGAGTATGC 58.887 45.455 0.00 0.00 42.48 3.14
2840 9257 5.696260 TTTCTTGAATACGCACGAGTATG 57.304 39.130 0.00 0.00 37.39 2.39
2841 9258 6.715344 TTTTTCTTGAATACGCACGAGTAT 57.285 33.333 0.00 0.00 38.83 2.12
2863 9280 6.206829 GGCAAAGGAGACACACTACTATTTTT 59.793 38.462 0.00 0.00 39.17 1.94
2864 9281 5.705905 GGCAAAGGAGACACACTACTATTTT 59.294 40.000 0.00 0.00 39.17 1.82
2865 9282 5.246307 GGCAAAGGAGACACACTACTATTT 58.754 41.667 0.00 0.00 39.17 1.40
2866 9283 4.620803 CGGCAAAGGAGACACACTACTATT 60.621 45.833 0.00 0.00 39.17 1.73
2867 9284 3.119101 CGGCAAAGGAGACACACTACTAT 60.119 47.826 0.00 0.00 39.17 2.12
2868 9285 2.230508 CGGCAAAGGAGACACACTACTA 59.769 50.000 0.00 0.00 39.17 1.82
2869 9286 1.000955 CGGCAAAGGAGACACACTACT 59.999 52.381 0.00 0.00 42.45 2.57
2870 9287 1.429463 CGGCAAAGGAGACACACTAC 58.571 55.000 0.00 0.00 0.00 2.73
2871 9288 0.320421 GCGGCAAAGGAGACACACTA 60.320 55.000 0.00 0.00 0.00 2.74
2872 9289 1.598130 GCGGCAAAGGAGACACACT 60.598 57.895 0.00 0.00 0.00 3.55
2873 9290 1.569479 GAGCGGCAAAGGAGACACAC 61.569 60.000 1.45 0.00 0.00 3.82
2874 9291 1.301716 GAGCGGCAAAGGAGACACA 60.302 57.895 1.45 0.00 0.00 3.72
2875 9292 1.004440 AGAGCGGCAAAGGAGACAC 60.004 57.895 1.45 0.00 0.00 3.67
2876 9293 1.293498 GAGAGCGGCAAAGGAGACA 59.707 57.895 1.45 0.00 0.00 3.41
2877 9294 0.320771 TTGAGAGCGGCAAAGGAGAC 60.321 55.000 1.45 0.00 0.00 3.36
2878 9295 0.396435 TTTGAGAGCGGCAAAGGAGA 59.604 50.000 1.45 0.00 32.04 3.71
2879 9296 0.801251 CTTTGAGAGCGGCAAAGGAG 59.199 55.000 16.29 0.00 45.17 3.69
2880 9297 2.932663 CTTTGAGAGCGGCAAAGGA 58.067 52.632 16.29 0.00 45.17 3.36
2883 9300 5.446143 TTATTTTCTTTGAGAGCGGCAAA 57.554 34.783 1.45 0.00 34.40 3.68
2884 9301 5.643379 ATTATTTTCTTTGAGAGCGGCAA 57.357 34.783 1.45 0.00 0.00 4.52
2885 9302 5.296780 CCTATTATTTTCTTTGAGAGCGGCA 59.703 40.000 1.45 0.00 0.00 5.69
2886 9303 5.278022 CCCTATTATTTTCTTTGAGAGCGGC 60.278 44.000 0.00 0.00 0.00 6.53
2887 9304 5.823045 ACCCTATTATTTTCTTTGAGAGCGG 59.177 40.000 0.00 0.00 0.00 5.52
2888 9305 6.927294 ACCCTATTATTTTCTTTGAGAGCG 57.073 37.500 0.00 0.00 0.00 5.03
2889 9306 8.056407 ACAACCCTATTATTTTCTTTGAGAGC 57.944 34.615 0.00 0.00 0.00 4.09
2890 9307 8.391106 CGACAACCCTATTATTTTCTTTGAGAG 58.609 37.037 0.00 0.00 0.00 3.20
2891 9308 7.881232 ACGACAACCCTATTATTTTCTTTGAGA 59.119 33.333 0.00 0.00 0.00 3.27
2892 9309 8.040716 ACGACAACCCTATTATTTTCTTTGAG 57.959 34.615 0.00 0.00 0.00 3.02
2893 9310 7.989416 ACGACAACCCTATTATTTTCTTTGA 57.011 32.000 0.00 0.00 0.00 2.69
2894 9311 7.540745 CCAACGACAACCCTATTATTTTCTTTG 59.459 37.037 0.00 0.00 0.00 2.77
2895 9312 7.231925 ACCAACGACAACCCTATTATTTTCTTT 59.768 33.333 0.00 0.00 0.00 2.52
2896 9313 6.717997 ACCAACGACAACCCTATTATTTTCTT 59.282 34.615 0.00 0.00 0.00 2.52
2897 9314 6.243148 ACCAACGACAACCCTATTATTTTCT 58.757 36.000 0.00 0.00 0.00 2.52
2898 9315 6.505044 ACCAACGACAACCCTATTATTTTC 57.495 37.500 0.00 0.00 0.00 2.29
2899 9316 5.122711 CGACCAACGACAACCCTATTATTTT 59.877 40.000 0.00 0.00 45.77 1.82
2900 9317 4.632688 CGACCAACGACAACCCTATTATTT 59.367 41.667 0.00 0.00 45.77 1.40
2901 9318 4.186159 CGACCAACGACAACCCTATTATT 58.814 43.478 0.00 0.00 45.77 1.40
2902 9319 3.431207 CCGACCAACGACAACCCTATTAT 60.431 47.826 0.00 0.00 45.77 1.28
2903 9320 2.094078 CCGACCAACGACAACCCTATTA 60.094 50.000 0.00 0.00 45.77 0.98
2904 9321 1.338389 CCGACCAACGACAACCCTATT 60.338 52.381 0.00 0.00 45.77 1.73
2905 9322 0.248289 CCGACCAACGACAACCCTAT 59.752 55.000 0.00 0.00 45.77 2.57
2906 9323 0.827089 TCCGACCAACGACAACCCTA 60.827 55.000 0.00 0.00 45.77 3.53
2907 9324 2.135581 TCCGACCAACGACAACCCT 61.136 57.895 0.00 0.00 45.77 4.34
2908 9325 1.957695 GTCCGACCAACGACAACCC 60.958 63.158 0.00 0.00 45.77 4.11
2909 9326 0.601841 ATGTCCGACCAACGACAACC 60.602 55.000 0.00 0.00 45.77 3.77
2910 9327 2.068837 TATGTCCGACCAACGACAAC 57.931 50.000 0.00 0.00 45.77 3.32
2911 9328 2.816204 TTATGTCCGACCAACGACAA 57.184 45.000 0.00 0.00 45.77 3.18
2912 9329 2.816204 TTTATGTCCGACCAACGACA 57.184 45.000 0.00 0.00 45.77 4.35
2913 9330 4.675510 TCTATTTATGTCCGACCAACGAC 58.324 43.478 0.00 0.00 45.77 4.34
2914 9331 4.987408 TCTATTTATGTCCGACCAACGA 57.013 40.909 0.00 0.00 45.77 3.85
2915 9332 5.558273 GCAATCTATTTATGTCCGACCAACG 60.558 44.000 0.00 0.00 42.18 4.10
2916 9333 5.295787 TGCAATCTATTTATGTCCGACCAAC 59.704 40.000 0.00 0.00 0.00 3.77
2917 9334 5.432645 TGCAATCTATTTATGTCCGACCAA 58.567 37.500 0.00 0.00 0.00 3.67
2918 9335 5.029807 TGCAATCTATTTATGTCCGACCA 57.970 39.130 0.00 0.00 0.00 4.02
2919 9336 6.170675 GATGCAATCTATTTATGTCCGACC 57.829 41.667 0.00 0.00 41.17 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.