Multiple sequence alignment - TraesCS2B01G541800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G541800 chr2B 100.000 2629 0 0 1 2629 738177979 738180607 0.000000e+00 4855
1 TraesCS2B01G541800 chr2B 96.266 616 20 2 2014 2629 570344509 570345121 0.000000e+00 1007
2 TraesCS2B01G541800 chr2B 95.961 619 19 2 2011 2629 229073132 229072520 0.000000e+00 1000
3 TraesCS2B01G541800 chr2D 88.312 1831 125 41 1 1754 606647324 606649142 0.000000e+00 2113
4 TraesCS2B01G541800 chr2A 89.915 1289 98 17 306 1568 738205332 738206614 0.000000e+00 1631
5 TraesCS2B01G541800 chr2A 89.239 920 71 16 860 1757 738213453 738214366 0.000000e+00 1125
6 TraesCS2B01G541800 chr2A 82.353 561 46 28 341 862 738212602 738213148 3.110000e-119 438
7 TraesCS2B01G541800 chr2A 88.021 192 17 5 1567 1757 738206938 738207124 3.410000e-54 222
8 TraesCS2B01G541800 chr2A 95.455 66 3 0 1 66 738204582 738204647 3.580000e-19 106
9 TraesCS2B01G541800 chr4B 96.429 616 16 2 2014 2629 401231703 401232312 0.000000e+00 1011
10 TraesCS2B01G541800 chr4B 96.117 618 19 2 2013 2629 386233473 386234086 0.000000e+00 1003
11 TraesCS2B01G541800 chr3B 96.429 616 16 2 2014 2629 487053915 487053306 0.000000e+00 1011
12 TraesCS2B01G541800 chr3B 96.110 617 18 2 2013 2629 487062294 487061684 0.000000e+00 1002
13 TraesCS2B01G541800 chr6B 96.266 616 19 1 2013 2628 579756589 579755978 0.000000e+00 1007
14 TraesCS2B01G541800 chr1B 96.266 616 18 2 2014 2629 320141378 320141988 0.000000e+00 1005
15 TraesCS2B01G541800 chr4A 96.104 616 20 1 2014 2629 664868053 664867442 0.000000e+00 1002
16 TraesCS2B01G541800 chr6A 82.101 257 38 7 1761 2014 66391213 66390962 2.050000e-51 213
17 TraesCS2B01G541800 chr7B 88.660 97 11 0 1917 2013 284123008 284123104 4.600000e-23 119
18 TraesCS2B01G541800 chr6D 82.258 124 22 0 1890 2013 463227011 463227134 9.950000e-20 108
19 TraesCS2B01G541800 chr7A 84.112 107 14 3 1907 2013 344756219 344756116 1.660000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G541800 chr2B 738177979 738180607 2628 False 4855.0 4855 100.000000 1 2629 1 chr2B.!!$F2 2628
1 TraesCS2B01G541800 chr2B 570344509 570345121 612 False 1007.0 1007 96.266000 2014 2629 1 chr2B.!!$F1 615
2 TraesCS2B01G541800 chr2B 229072520 229073132 612 True 1000.0 1000 95.961000 2011 2629 1 chr2B.!!$R1 618
3 TraesCS2B01G541800 chr2D 606647324 606649142 1818 False 2113.0 2113 88.312000 1 1754 1 chr2D.!!$F1 1753
4 TraesCS2B01G541800 chr2A 738212602 738214366 1764 False 781.5 1125 85.796000 341 1757 2 chr2A.!!$F2 1416
5 TraesCS2B01G541800 chr2A 738204582 738207124 2542 False 653.0 1631 91.130333 1 1757 3 chr2A.!!$F1 1756
6 TraesCS2B01G541800 chr4B 401231703 401232312 609 False 1011.0 1011 96.429000 2014 2629 1 chr4B.!!$F2 615
7 TraesCS2B01G541800 chr4B 386233473 386234086 613 False 1003.0 1003 96.117000 2013 2629 1 chr4B.!!$F1 616
8 TraesCS2B01G541800 chr3B 487053306 487053915 609 True 1011.0 1011 96.429000 2014 2629 1 chr3B.!!$R1 615
9 TraesCS2B01G541800 chr3B 487061684 487062294 610 True 1002.0 1002 96.110000 2013 2629 1 chr3B.!!$R2 616
10 TraesCS2B01G541800 chr6B 579755978 579756589 611 True 1007.0 1007 96.266000 2013 2628 1 chr6B.!!$R1 615
11 TraesCS2B01G541800 chr1B 320141378 320141988 610 False 1005.0 1005 96.266000 2014 2629 1 chr1B.!!$F1 615
12 TraesCS2B01G541800 chr4A 664867442 664868053 611 True 1002.0 1002 96.104000 2014 2629 1 chr4A.!!$R1 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
603 1071 0.250513 CAGAACTGGCTGGAGTACCC 59.749 60.0 0.0 0.0 34.81 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1929 3134 0.031449 GCCTTGTGTTTGCGCCTAAA 59.969 50.0 4.18 0.0 0.0 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.021016 GGCTGTGGTCTCGGATAAATATCT 60.021 45.833 0.81 0.00 33.28 1.98
103 221 0.730265 TGTCCTTGTGTGCACGAAAC 59.270 50.000 13.13 5.55 0.00 2.78
179 297 5.597182 ACTAGTGGCGAGAATAATCTAACCA 59.403 40.000 0.00 0.00 38.03 3.67
181 299 5.741011 AGTGGCGAGAATAATCTAACCAAA 58.259 37.500 3.41 0.00 40.54 3.28
209 328 3.041946 AGAGAAGACCGCCTTATCCATT 58.958 45.455 6.75 0.00 42.53 3.16
244 366 2.342279 CGGCGAAGAGGTGAACCA 59.658 61.111 0.00 0.00 38.89 3.67
245 367 2.027625 CGGCGAAGAGGTGAACCAC 61.028 63.158 0.00 0.00 38.89 4.16
252 374 3.377172 CGAAGAGGTGAACCACTTTGTTT 59.623 43.478 12.58 0.00 44.99 2.83
291 413 1.669795 GGAAAATGGAAGCTTGTGCCG 60.670 52.381 2.10 0.00 40.80 5.69
388 840 3.063197 AACTGGCACCGGGTTTGGA 62.063 57.895 6.32 0.00 0.00 3.53
389 841 2.035626 CTGGCACCGGGTTTGGAT 59.964 61.111 6.32 0.00 0.00 3.41
390 842 1.606313 CTGGCACCGGGTTTGGATT 60.606 57.895 6.32 0.00 0.00 3.01
429 886 2.621445 ATGTCCCGGCCCAATCCAA 61.621 57.895 0.00 0.00 0.00 3.53
470 927 4.183101 CACACACCAACATTCTGCTTTTT 58.817 39.130 0.00 0.00 0.00 1.94
472 929 3.556775 CACACCAACATTCTGCTTTTTGG 59.443 43.478 0.00 0.00 42.15 3.28
490 950 2.857483 TGGTTTGGTACAGTCCACATG 58.143 47.619 0.00 0.00 42.39 3.21
532 992 5.056480 TCGAGTTGTGATTGTGAACAGAAT 58.944 37.500 0.00 0.00 0.00 2.40
580 1040 2.483877 CGCTTCCACAGAATTAACAGCA 59.516 45.455 0.00 0.00 0.00 4.41
603 1071 0.250513 CAGAACTGGCTGGAGTACCC 59.749 60.000 0.00 0.00 34.81 3.69
613 1081 2.614734 GCTGGAGTACCCACCTTTGTAC 60.615 54.545 0.00 0.00 40.82 2.90
615 1083 3.320129 TGGAGTACCCACCTTTGTACTT 58.680 45.455 4.05 0.00 45.69 2.24
616 1084 4.491675 TGGAGTACCCACCTTTGTACTTA 58.508 43.478 4.05 0.00 45.69 2.24
649 1156 2.880890 GACACCATCTGGGCATGTAATC 59.119 50.000 0.54 0.00 42.05 1.75
650 1157 1.875514 CACCATCTGGGCATGTAATCG 59.124 52.381 0.54 0.00 42.05 3.34
651 1158 0.877071 CCATCTGGGCATGTAATCGC 59.123 55.000 0.00 0.00 0.00 4.58
693 1205 3.579709 CTCAGTGTGAAGTTACAGCGAT 58.420 45.455 0.00 0.00 0.00 4.58
698 1210 0.392461 TGAAGTTACAGCGATGGCCC 60.392 55.000 5.32 0.00 41.24 5.80
700 1212 1.895020 AAGTTACAGCGATGGCCCGA 61.895 55.000 5.32 0.00 41.24 5.14
704 1216 3.842923 CAGCGATGGCCCGAGTCT 61.843 66.667 0.00 0.00 41.24 3.24
731 1247 0.458543 GACATGTGTCGATCTGCCGT 60.459 55.000 1.15 0.00 35.12 5.68
772 1302 2.749076 CCTCAACTGATTCAATTCGCCA 59.251 45.455 0.00 0.00 0.00 5.69
912 1753 7.469181 GCCATTATTAGTTTCATCCAACTCCAG 60.469 40.741 0.00 0.00 38.07 3.86
972 1819 1.294459 GGTCAGGTCCGTGGTAACC 59.706 63.158 0.00 0.00 35.69 2.85
1077 1927 1.884235 CGGTGGGAGGAATTATCTGC 58.116 55.000 0.00 0.00 0.00 4.26
1080 1930 2.439507 GGTGGGAGGAATTATCTGCAGA 59.560 50.000 20.79 20.79 0.00 4.26
1185 2035 1.742761 CTCTGGCCGTTCAACATCAT 58.257 50.000 0.00 0.00 0.00 2.45
1436 2310 6.256053 AGATTGGTTTGATAGGTTGGTTCAT 58.744 36.000 0.00 0.00 0.00 2.57
1438 2312 6.827586 TTGGTTTGATAGGTTGGTTCATAC 57.172 37.500 0.00 0.00 0.00 2.39
1439 2313 4.938832 TGGTTTGATAGGTTGGTTCATACG 59.061 41.667 0.00 0.00 0.00 3.06
1441 2315 6.108015 GGTTTGATAGGTTGGTTCATACGTA 58.892 40.000 0.00 0.00 0.00 3.57
1442 2316 6.594937 GGTTTGATAGGTTGGTTCATACGTAA 59.405 38.462 0.00 0.00 0.00 3.18
1443 2317 7.281549 GGTTTGATAGGTTGGTTCATACGTAAT 59.718 37.037 0.00 0.00 0.00 1.89
1444 2318 8.671028 GTTTGATAGGTTGGTTCATACGTAATT 58.329 33.333 0.00 0.00 0.00 1.40
1445 2319 8.795842 TTGATAGGTTGGTTCATACGTAATTT 57.204 30.769 0.00 0.00 0.00 1.82
1446 2320 8.203937 TGATAGGTTGGTTCATACGTAATTTG 57.796 34.615 0.00 0.00 0.00 2.32
1447 2321 7.825270 TGATAGGTTGGTTCATACGTAATTTGT 59.175 33.333 0.00 0.00 0.00 2.83
1448 2322 6.887626 AGGTTGGTTCATACGTAATTTGTT 57.112 33.333 0.00 0.00 0.00 2.83
1449 2323 7.279750 AGGTTGGTTCATACGTAATTTGTTT 57.720 32.000 0.00 0.00 0.00 2.83
1450 2324 7.142680 AGGTTGGTTCATACGTAATTTGTTTG 58.857 34.615 0.00 0.00 0.00 2.93
1476 2350 1.600916 GGCCGTGCTCTTCTTGGTT 60.601 57.895 0.00 0.00 0.00 3.67
1477 2351 1.172812 GGCCGTGCTCTTCTTGGTTT 61.173 55.000 0.00 0.00 0.00 3.27
1484 2358 4.201724 CGTGCTCTTCTTGGTTTGTATAGC 60.202 45.833 0.00 0.00 0.00 2.97
1485 2359 4.095036 GTGCTCTTCTTGGTTTGTATAGCC 59.905 45.833 0.00 0.00 0.00 3.93
1486 2360 3.628032 GCTCTTCTTGGTTTGTATAGCCC 59.372 47.826 0.00 0.00 0.00 5.19
1502 2376 9.569122 TTGTATAGCCCAGTTATAAGAATTTCC 57.431 33.333 0.00 0.00 0.00 3.13
1503 2377 8.945193 TGTATAGCCCAGTTATAAGAATTTCCT 58.055 33.333 0.00 0.00 0.00 3.36
1509 2383 7.630728 GCCCAGTTATAAGAATTTCCTTTGGAC 60.631 40.741 0.00 0.00 0.00 4.02
1510 2384 7.615757 CCCAGTTATAAGAATTTCCTTTGGACT 59.384 37.037 0.00 0.00 0.00 3.85
1524 2398 0.538584 TGGACTCTGCACATAGCCAG 59.461 55.000 0.00 0.00 44.83 4.85
1527 2401 2.630098 GGACTCTGCACATAGCCAGATA 59.370 50.000 0.00 0.00 44.83 1.98
1555 2429 3.579586 TCCATTTCTCTTTGCCTGCATTT 59.420 39.130 0.00 0.00 0.00 2.32
1577 2776 2.095213 GTCGGCTGCGTTCATGAATTTA 59.905 45.455 12.12 0.10 0.00 1.40
1621 2820 9.723601 TTATGAAATGCAAAGGAGCTTAAATTT 57.276 25.926 0.00 0.00 34.99 1.82
1622 2821 8.625786 ATGAAATGCAAAGGAGCTTAAATTTT 57.374 26.923 0.00 0.00 34.99 1.82
1647 2846 4.885325 ACATACCCGGGTTCATATTGTTTC 59.115 41.667 35.42 0.00 0.00 2.78
1671 2871 4.391830 TGAAACAGTTGCACCGATCTTATC 59.608 41.667 0.00 0.00 0.00 1.75
1722 2922 6.831664 AGAATCCAACCATAGGACTACAAT 57.168 37.500 0.00 0.00 38.13 2.71
1724 2924 7.056635 AGAATCCAACCATAGGACTACAATTG 58.943 38.462 3.24 3.24 38.13 2.32
1727 2932 6.785076 TCCAACCATAGGACTACAATTGAAA 58.215 36.000 13.59 0.00 0.00 2.69
1759 2964 9.944376 ACATTGAAAACATATACACTACAGACT 57.056 29.630 0.00 0.00 0.00 3.24
1762 2967 9.772973 TTGAAAACATATACACTACAGACTTGT 57.227 29.630 0.00 0.00 41.39 3.16
1763 2968 9.772973 TGAAAACATATACACTACAGACTTGTT 57.227 29.630 0.00 0.00 38.76 2.83
1767 2972 9.555727 AACATATACACTACAGACTTGTTTTGT 57.444 29.630 0.00 0.00 38.76 2.83
1770 2975 5.986004 ACACTACAGACTTGTTTTGTAGC 57.014 39.130 17.96 0.00 45.06 3.58
1771 2976 4.814771 ACACTACAGACTTGTTTTGTAGCC 59.185 41.667 17.96 0.00 45.06 3.93
1772 2977 5.057149 CACTACAGACTTGTTTTGTAGCCT 58.943 41.667 17.96 5.62 45.06 4.58
1773 2978 5.527582 CACTACAGACTTGTTTTGTAGCCTT 59.472 40.000 17.96 5.17 45.06 4.35
1774 2979 5.758784 ACTACAGACTTGTTTTGTAGCCTTC 59.241 40.000 17.96 0.00 45.06 3.46
1775 2980 3.883489 ACAGACTTGTTTTGTAGCCTTCC 59.117 43.478 0.00 0.00 32.28 3.46
1776 2981 3.253432 CAGACTTGTTTTGTAGCCTTCCC 59.747 47.826 0.00 0.00 0.00 3.97
1777 2982 2.225727 GACTTGTTTTGTAGCCTTCCCG 59.774 50.000 0.00 0.00 0.00 5.14
1778 2983 2.158726 ACTTGTTTTGTAGCCTTCCCGA 60.159 45.455 0.00 0.00 0.00 5.14
1779 2984 2.178912 TGTTTTGTAGCCTTCCCGAG 57.821 50.000 0.00 0.00 0.00 4.63
1780 2985 0.803117 GTTTTGTAGCCTTCCCGAGC 59.197 55.000 0.00 0.00 0.00 5.03
1781 2986 0.672401 TTTTGTAGCCTTCCCGAGCG 60.672 55.000 0.00 0.00 0.00 5.03
1782 2987 1.537814 TTTGTAGCCTTCCCGAGCGA 61.538 55.000 0.00 0.00 0.00 4.93
1783 2988 1.945354 TTGTAGCCTTCCCGAGCGAG 61.945 60.000 0.00 0.00 0.00 5.03
1784 2989 3.528370 TAGCCTTCCCGAGCGAGC 61.528 66.667 0.00 0.00 0.00 5.03
1787 2992 4.521062 CCTTCCCGAGCGAGCCTG 62.521 72.222 0.00 0.00 0.00 4.85
1788 2993 4.521062 CTTCCCGAGCGAGCCTGG 62.521 72.222 0.00 0.00 0.00 4.45
1801 3006 4.087892 CCTGGCCCGTGGAGTCAG 62.088 72.222 0.00 3.00 0.00 3.51
1802 3007 4.767255 CTGGCCCGTGGAGTCAGC 62.767 72.222 0.00 0.00 0.00 4.26
1804 3009 4.767255 GGCCCGTGGAGTCAGCTG 62.767 72.222 7.63 7.63 0.00 4.24
1805 3010 4.767255 GCCCGTGGAGTCAGCTGG 62.767 72.222 15.13 0.00 0.00 4.85
1806 3011 4.767255 CCCGTGGAGTCAGCTGGC 62.767 72.222 11.28 11.28 0.00 4.85
1807 3012 3.699894 CCGTGGAGTCAGCTGGCT 61.700 66.667 23.48 23.48 0.00 4.75
1808 3013 2.125753 CGTGGAGTCAGCTGGCTC 60.126 66.667 35.29 35.29 45.58 4.70
1813 3018 3.312404 GAGTCAGCTGGCTCAACAA 57.688 52.632 37.21 3.18 45.61 2.83
1814 3019 1.597742 GAGTCAGCTGGCTCAACAAA 58.402 50.000 37.21 2.38 45.61 2.83
1815 3020 1.534595 GAGTCAGCTGGCTCAACAAAG 59.465 52.381 37.21 0.00 45.61 2.77
1816 3021 0.039708 GTCAGCTGGCTCAACAAAGC 60.040 55.000 12.09 0.00 41.73 3.51
1817 3022 0.179009 TCAGCTGGCTCAACAAAGCT 60.179 50.000 15.13 0.00 46.70 3.74
1818 3023 2.338381 AGCTGGCTCAACAAAGCTG 58.662 52.632 0.00 0.00 44.14 4.24
1819 3024 0.179009 AGCTGGCTCAACAAAGCTGA 60.179 50.000 0.00 0.00 44.14 4.26
1820 3025 0.039708 GCTGGCTCAACAAAGCTGAC 60.040 55.000 0.00 0.00 42.13 3.51
1821 3026 1.602311 CTGGCTCAACAAAGCTGACT 58.398 50.000 0.00 0.00 42.13 3.41
1822 3027 1.266175 CTGGCTCAACAAAGCTGACTG 59.734 52.381 0.00 0.00 42.13 3.51
1823 3028 1.312815 GGCTCAACAAAGCTGACTGT 58.687 50.000 0.00 0.00 42.13 3.55
1824 3029 1.002033 GGCTCAACAAAGCTGACTGTG 60.002 52.381 0.00 0.00 42.13 3.66
1825 3030 1.002033 GCTCAACAAAGCTGACTGTGG 60.002 52.381 0.00 0.00 39.27 4.17
1826 3031 2.292267 CTCAACAAAGCTGACTGTGGT 58.708 47.619 0.00 0.00 35.19 4.16
1827 3032 3.466836 CTCAACAAAGCTGACTGTGGTA 58.533 45.455 0.00 0.00 35.19 3.25
1828 3033 3.876914 CTCAACAAAGCTGACTGTGGTAA 59.123 43.478 0.00 0.00 35.19 2.85
1829 3034 4.265893 TCAACAAAGCTGACTGTGGTAAA 58.734 39.130 0.00 0.00 35.19 2.01
1830 3035 4.702612 TCAACAAAGCTGACTGTGGTAAAA 59.297 37.500 0.00 0.00 35.19 1.52
1831 3036 4.632538 ACAAAGCTGACTGTGGTAAAAC 57.367 40.909 0.00 0.00 35.19 2.43
1832 3037 4.013728 ACAAAGCTGACTGTGGTAAAACA 58.986 39.130 0.00 0.00 35.19 2.83
1841 3046 4.647424 CTGTGGTAAAACAGGCAGAAAA 57.353 40.909 0.00 0.00 43.22 2.29
1842 3047 5.200368 CTGTGGTAAAACAGGCAGAAAAT 57.800 39.130 0.00 0.00 43.22 1.82
1843 3048 5.195001 TGTGGTAAAACAGGCAGAAAATC 57.805 39.130 0.00 0.00 0.00 2.17
1844 3049 4.646945 TGTGGTAAAACAGGCAGAAAATCA 59.353 37.500 0.00 0.00 0.00 2.57
1845 3050 5.127845 TGTGGTAAAACAGGCAGAAAATCAA 59.872 36.000 0.00 0.00 0.00 2.57
1846 3051 5.462068 GTGGTAAAACAGGCAGAAAATCAAC 59.538 40.000 0.00 0.00 0.00 3.18
1847 3052 5.127845 TGGTAAAACAGGCAGAAAATCAACA 59.872 36.000 0.00 0.00 0.00 3.33
1848 3053 6.183360 TGGTAAAACAGGCAGAAAATCAACAT 60.183 34.615 0.00 0.00 0.00 2.71
1849 3054 6.366061 GGTAAAACAGGCAGAAAATCAACATC 59.634 38.462 0.00 0.00 0.00 3.06
1850 3055 5.796424 AAACAGGCAGAAAATCAACATCT 57.204 34.783 0.00 0.00 0.00 2.90
1851 3056 5.796424 AACAGGCAGAAAATCAACATCTT 57.204 34.783 0.00 0.00 0.00 2.40
1852 3057 5.382618 ACAGGCAGAAAATCAACATCTTC 57.617 39.130 0.00 0.00 0.00 2.87
1853 3058 4.083110 ACAGGCAGAAAATCAACATCTTCG 60.083 41.667 0.00 0.00 0.00 3.79
1854 3059 4.074970 AGGCAGAAAATCAACATCTTCGT 58.925 39.130 0.00 0.00 0.00 3.85
1855 3060 5.122239 CAGGCAGAAAATCAACATCTTCGTA 59.878 40.000 0.00 0.00 0.00 3.43
1856 3061 5.882557 AGGCAGAAAATCAACATCTTCGTAT 59.117 36.000 0.00 0.00 0.00 3.06
1857 3062 7.011389 CAGGCAGAAAATCAACATCTTCGTATA 59.989 37.037 0.00 0.00 0.00 1.47
1858 3063 7.225538 AGGCAGAAAATCAACATCTTCGTATAG 59.774 37.037 0.00 0.00 0.00 1.31
1859 3064 7.011482 GGCAGAAAATCAACATCTTCGTATAGT 59.989 37.037 0.00 0.00 0.00 2.12
1860 3065 8.391106 GCAGAAAATCAACATCTTCGTATAGTT 58.609 33.333 0.00 0.00 0.00 2.24
1865 3070 9.436957 AAATCAACATCTTCGTATAGTTTGACT 57.563 29.630 0.00 0.00 0.00 3.41
1866 3071 7.812309 TCAACATCTTCGTATAGTTTGACTG 57.188 36.000 0.00 0.00 0.00 3.51
1867 3072 6.310467 TCAACATCTTCGTATAGTTTGACTGC 59.690 38.462 0.00 0.00 0.00 4.40
1868 3073 4.798907 ACATCTTCGTATAGTTTGACTGCG 59.201 41.667 0.00 0.00 0.00 5.18
1869 3074 4.430137 TCTTCGTATAGTTTGACTGCGT 57.570 40.909 0.00 0.00 0.00 5.24
1870 3075 4.163552 TCTTCGTATAGTTTGACTGCGTG 58.836 43.478 0.00 0.00 0.00 5.34
1871 3076 2.256174 TCGTATAGTTTGACTGCGTGC 58.744 47.619 0.00 0.00 0.00 5.34
1872 3077 1.989864 CGTATAGTTTGACTGCGTGCA 59.010 47.619 0.00 0.00 0.00 4.57
1873 3078 2.603110 CGTATAGTTTGACTGCGTGCAT 59.397 45.455 0.00 0.00 0.00 3.96
1874 3079 3.794564 CGTATAGTTTGACTGCGTGCATA 59.205 43.478 0.00 0.00 0.00 3.14
1875 3080 4.444388 CGTATAGTTTGACTGCGTGCATAT 59.556 41.667 0.00 0.00 0.00 1.78
1876 3081 5.387444 CGTATAGTTTGACTGCGTGCATATC 60.387 44.000 0.00 0.00 0.00 1.63
1877 3082 2.698803 AGTTTGACTGCGTGCATATCA 58.301 42.857 0.00 0.00 0.00 2.15
1878 3083 3.273434 AGTTTGACTGCGTGCATATCAT 58.727 40.909 9.06 0.00 0.00 2.45
1879 3084 3.310774 AGTTTGACTGCGTGCATATCATC 59.689 43.478 9.06 6.74 0.00 2.92
1880 3085 2.896745 TGACTGCGTGCATATCATCT 57.103 45.000 0.00 0.00 0.00 2.90
1881 3086 4.320608 TTGACTGCGTGCATATCATCTA 57.679 40.909 9.06 0.00 0.00 1.98
1882 3087 3.905784 TGACTGCGTGCATATCATCTAG 58.094 45.455 0.00 0.00 0.00 2.43
1883 3088 3.249091 GACTGCGTGCATATCATCTAGG 58.751 50.000 0.00 0.00 0.00 3.02
1884 3089 1.998315 CTGCGTGCATATCATCTAGGC 59.002 52.381 0.00 0.00 0.00 3.93
1885 3090 1.620323 TGCGTGCATATCATCTAGGCT 59.380 47.619 0.00 0.00 0.00 4.58
1886 3091 1.998315 GCGTGCATATCATCTAGGCTG 59.002 52.381 0.00 0.00 0.00 4.85
1887 3092 1.998315 CGTGCATATCATCTAGGCTGC 59.002 52.381 0.00 0.00 0.00 5.25
1888 3093 2.611224 CGTGCATATCATCTAGGCTGCA 60.611 50.000 0.50 0.00 37.29 4.41
1889 3094 3.607741 GTGCATATCATCTAGGCTGCAT 58.392 45.455 0.50 0.00 41.17 3.96
1890 3095 3.374367 GTGCATATCATCTAGGCTGCATG 59.626 47.826 0.50 0.00 41.17 4.06
1891 3096 2.943690 GCATATCATCTAGGCTGCATGG 59.056 50.000 0.50 0.00 0.00 3.66
1892 3097 3.542648 CATATCATCTAGGCTGCATGGG 58.457 50.000 0.50 0.00 0.00 4.00
1893 3098 0.697079 ATCATCTAGGCTGCATGGGG 59.303 55.000 0.50 0.00 0.00 4.96
1894 3099 0.695462 TCATCTAGGCTGCATGGGGT 60.695 55.000 0.50 0.00 0.00 4.95
1895 3100 0.536687 CATCTAGGCTGCATGGGGTG 60.537 60.000 0.50 0.00 0.00 4.61
1896 3101 0.990282 ATCTAGGCTGCATGGGGTGT 60.990 55.000 0.50 0.00 0.00 4.16
1897 3102 0.326143 TCTAGGCTGCATGGGGTGTA 60.326 55.000 0.50 0.00 0.00 2.90
1898 3103 0.546122 CTAGGCTGCATGGGGTGTAA 59.454 55.000 0.50 0.00 0.00 2.41
1899 3104 0.254747 TAGGCTGCATGGGGTGTAAC 59.745 55.000 0.50 0.00 0.00 2.50
1900 3105 2.406616 GGCTGCATGGGGTGTAACG 61.407 63.158 0.50 0.00 38.12 3.18
1901 3106 1.376683 GCTGCATGGGGTGTAACGA 60.377 57.895 0.00 0.00 38.12 3.85
1902 3107 0.958382 GCTGCATGGGGTGTAACGAA 60.958 55.000 0.00 0.00 38.12 3.85
1903 3108 1.529226 CTGCATGGGGTGTAACGAAA 58.471 50.000 0.00 0.00 38.12 3.46
1904 3109 1.468520 CTGCATGGGGTGTAACGAAAG 59.531 52.381 0.00 0.00 38.12 2.62
1905 3110 0.808755 GCATGGGGTGTAACGAAAGG 59.191 55.000 0.00 0.00 38.12 3.11
1906 3111 1.884928 GCATGGGGTGTAACGAAAGGT 60.885 52.381 0.00 0.00 38.12 3.50
1907 3112 2.616001 GCATGGGGTGTAACGAAAGGTA 60.616 50.000 0.00 0.00 38.12 3.08
1908 3113 3.267483 CATGGGGTGTAACGAAAGGTAG 58.733 50.000 0.00 0.00 38.12 3.18
1909 3114 2.328319 TGGGGTGTAACGAAAGGTAGT 58.672 47.619 0.00 0.00 38.12 2.73
1910 3115 2.299867 TGGGGTGTAACGAAAGGTAGTC 59.700 50.000 0.00 0.00 38.12 2.59
1911 3116 2.564504 GGGGTGTAACGAAAGGTAGTCT 59.435 50.000 0.00 0.00 38.12 3.24
1912 3117 3.582780 GGGTGTAACGAAAGGTAGTCTG 58.417 50.000 0.00 0.00 38.12 3.51
1913 3118 3.006217 GGGTGTAACGAAAGGTAGTCTGT 59.994 47.826 0.00 0.00 38.12 3.41
1914 3119 4.502087 GGGTGTAACGAAAGGTAGTCTGTT 60.502 45.833 0.00 0.00 38.12 3.16
1915 3120 4.446719 GGTGTAACGAAAGGTAGTCTGTTG 59.553 45.833 0.00 0.00 38.12 3.33
1916 3121 4.446719 GTGTAACGAAAGGTAGTCTGTTGG 59.553 45.833 0.00 0.00 31.12 3.77
1917 3122 2.833631 ACGAAAGGTAGTCTGTTGGG 57.166 50.000 0.00 0.00 0.00 4.12
1918 3123 2.044758 ACGAAAGGTAGTCTGTTGGGT 58.955 47.619 0.00 0.00 0.00 4.51
1919 3124 2.436911 ACGAAAGGTAGTCTGTTGGGTT 59.563 45.455 0.00 0.00 0.00 4.11
1920 3125 2.806244 CGAAAGGTAGTCTGTTGGGTTG 59.194 50.000 0.00 0.00 0.00 3.77
1921 3126 3.743269 CGAAAGGTAGTCTGTTGGGTTGT 60.743 47.826 0.00 0.00 0.00 3.32
1922 3127 3.487120 AAGGTAGTCTGTTGGGTTGTC 57.513 47.619 0.00 0.00 0.00 3.18
1923 3128 1.697982 AGGTAGTCTGTTGGGTTGTCC 59.302 52.381 0.00 0.00 0.00 4.02
1924 3129 1.607251 GGTAGTCTGTTGGGTTGTCCG 60.607 57.143 0.00 0.00 38.76 4.79
1925 3130 0.034337 TAGTCTGTTGGGTTGTCCGC 59.966 55.000 0.00 0.00 38.76 5.54
1926 3131 1.227853 GTCTGTTGGGTTGTCCGCT 60.228 57.895 0.00 0.00 38.76 5.52
1927 3132 0.818040 GTCTGTTGGGTTGTCCGCTT 60.818 55.000 0.00 0.00 38.76 4.68
1928 3133 0.817634 TCTGTTGGGTTGTCCGCTTG 60.818 55.000 0.00 0.00 38.76 4.01
1929 3134 1.077357 TGTTGGGTTGTCCGCTTGT 60.077 52.632 0.00 0.00 38.76 3.16
1930 3135 0.681564 TGTTGGGTTGTCCGCTTGTT 60.682 50.000 0.00 0.00 38.76 2.83
1931 3136 0.458260 GTTGGGTTGTCCGCTTGTTT 59.542 50.000 0.00 0.00 38.76 2.83
1932 3137 1.677052 GTTGGGTTGTCCGCTTGTTTA 59.323 47.619 0.00 0.00 38.76 2.01
1933 3138 1.600023 TGGGTTGTCCGCTTGTTTAG 58.400 50.000 0.00 0.00 38.76 1.85
1934 3139 0.879090 GGGTTGTCCGCTTGTTTAGG 59.121 55.000 0.00 0.00 33.83 2.69
1935 3140 0.240145 GGTTGTCCGCTTGTTTAGGC 59.760 55.000 0.00 0.00 0.00 3.93
1940 3145 4.933483 CGCTTGTTTAGGCGCAAA 57.067 50.000 10.83 0.00 44.64 3.68
1941 3146 2.420097 CGCTTGTTTAGGCGCAAAC 58.580 52.632 10.83 13.15 44.64 2.93
1942 3147 0.317436 CGCTTGTTTAGGCGCAAACA 60.317 50.000 18.81 18.81 44.50 2.83
1943 3148 1.128513 GCTTGTTTAGGCGCAAACAC 58.871 50.000 21.50 10.64 45.52 3.32
1944 3149 1.535015 GCTTGTTTAGGCGCAAACACA 60.535 47.619 21.50 10.85 45.52 3.72
1945 3150 2.803451 CTTGTTTAGGCGCAAACACAA 58.197 42.857 21.50 16.66 45.52 3.33
1946 3151 2.483583 TGTTTAGGCGCAAACACAAG 57.516 45.000 18.81 0.00 42.08 3.16
1947 3152 1.066303 TGTTTAGGCGCAAACACAAGG 59.934 47.619 18.81 0.00 42.08 3.61
1948 3153 0.031449 TTTAGGCGCAAACACAAGGC 59.969 50.000 10.83 0.00 0.00 4.35
1949 3154 1.103987 TTAGGCGCAAACACAAGGCA 61.104 50.000 10.83 0.00 0.00 4.75
1950 3155 0.893270 TAGGCGCAAACACAAGGCAT 60.893 50.000 10.83 0.00 0.00 4.40
1951 3156 2.023223 GGCGCAAACACAAGGCATG 61.023 57.895 10.83 0.00 0.00 4.06
1952 3157 2.023223 GCGCAAACACAAGGCATGG 61.023 57.895 0.30 0.00 0.00 3.66
1953 3158 1.363443 CGCAAACACAAGGCATGGT 59.637 52.632 0.00 0.00 0.00 3.55
1954 3159 0.940519 CGCAAACACAAGGCATGGTG 60.941 55.000 3.87 3.87 40.78 4.17
1959 3164 0.752054 ACACAAGGCATGGTGTTTGG 59.248 50.000 5.51 0.00 45.39 3.28
1960 3165 0.752054 CACAAGGCATGGTGTTTGGT 59.248 50.000 0.00 0.00 0.00 3.67
1961 3166 1.138661 CACAAGGCATGGTGTTTGGTT 59.861 47.619 0.00 0.00 0.00 3.67
1962 3167 1.412343 ACAAGGCATGGTGTTTGGTTC 59.588 47.619 0.00 0.00 0.00 3.62
1963 3168 1.047801 AAGGCATGGTGTTTGGTTCC 58.952 50.000 0.00 0.00 0.00 3.62
1964 3169 0.105760 AGGCATGGTGTTTGGTTCCA 60.106 50.000 0.00 0.00 35.64 3.53
1965 3170 0.975887 GGCATGGTGTTTGGTTCCAT 59.024 50.000 0.00 0.00 41.88 3.41
1966 3171 1.066929 GGCATGGTGTTTGGTTCCATC 60.067 52.381 0.00 0.00 39.57 3.51
1967 3172 1.066929 GCATGGTGTTTGGTTCCATCC 60.067 52.381 0.00 0.00 39.57 3.51
1968 3173 2.246469 CATGGTGTTTGGTTCCATCCA 58.754 47.619 0.00 1.06 39.57 3.41
1969 3174 2.461300 TGGTGTTTGGTTCCATCCAA 57.539 45.000 0.00 0.00 44.48 3.53
1970 3175 2.035632 TGGTGTTTGGTTCCATCCAAC 58.964 47.619 0.00 0.00 45.60 3.77
1971 3176 2.035632 GGTGTTTGGTTCCATCCAACA 58.964 47.619 4.17 4.17 45.60 3.33
1972 3177 2.223947 GGTGTTTGGTTCCATCCAACAC 60.224 50.000 20.64 20.64 45.60 3.32
1973 3178 2.428890 GTGTTTGGTTCCATCCAACACA 59.571 45.455 22.43 8.50 45.60 3.72
1974 3179 3.069443 GTGTTTGGTTCCATCCAACACAT 59.931 43.478 22.43 0.00 45.60 3.21
1975 3180 3.069300 TGTTTGGTTCCATCCAACACATG 59.931 43.478 4.17 0.00 45.60 3.21
1976 3181 2.673775 TGGTTCCATCCAACACATGT 57.326 45.000 0.00 0.00 34.24 3.21
1977 3182 2.956132 TGGTTCCATCCAACACATGTT 58.044 42.857 0.00 0.00 39.12 2.71
1990 3195 5.869753 AACACATGTTGTCTGATAAGCTC 57.130 39.130 0.00 0.00 37.51 4.09
1991 3196 5.157940 ACACATGTTGTCTGATAAGCTCT 57.842 39.130 0.00 0.00 29.79 4.09
1992 3197 5.555017 ACACATGTTGTCTGATAAGCTCTT 58.445 37.500 0.00 0.00 29.79 2.85
1993 3198 5.641209 ACACATGTTGTCTGATAAGCTCTTC 59.359 40.000 0.00 0.00 29.79 2.87
1994 3199 4.867047 ACATGTTGTCTGATAAGCTCTTCG 59.133 41.667 0.00 0.00 0.00 3.79
1995 3200 4.783764 TGTTGTCTGATAAGCTCTTCGA 57.216 40.909 0.00 0.00 0.00 3.71
1996 3201 4.486090 TGTTGTCTGATAAGCTCTTCGAC 58.514 43.478 0.00 0.86 0.00 4.20
1997 3202 3.406728 TGTCTGATAAGCTCTTCGACG 57.593 47.619 0.00 0.00 0.00 5.12
1998 3203 3.007635 TGTCTGATAAGCTCTTCGACGA 58.992 45.455 0.00 0.00 0.00 4.20
1999 3204 3.064134 TGTCTGATAAGCTCTTCGACGAG 59.936 47.826 14.25 14.25 0.00 4.18
2000 3205 2.614520 TCTGATAAGCTCTTCGACGAGG 59.385 50.000 19.33 0.00 0.00 4.63
2001 3206 2.356382 CTGATAAGCTCTTCGACGAGGT 59.644 50.000 16.94 16.94 43.06 3.85
2002 3207 2.097629 TGATAAGCTCTTCGACGAGGTG 59.902 50.000 22.30 5.79 40.58 4.00
2003 3208 0.809385 TAAGCTCTTCGACGAGGTGG 59.191 55.000 22.30 0.00 40.58 4.61
2004 3209 1.179814 AAGCTCTTCGACGAGGTGGT 61.180 55.000 22.30 6.91 40.58 4.16
2005 3210 1.444553 GCTCTTCGACGAGGTGGTG 60.445 63.158 19.33 0.00 0.00 4.17
2006 3211 1.863662 GCTCTTCGACGAGGTGGTGA 61.864 60.000 19.33 0.00 0.00 4.02
2007 3212 0.811915 CTCTTCGACGAGGTGGTGAT 59.188 55.000 10.95 0.00 0.00 3.06
2008 3213 0.526211 TCTTCGACGAGGTGGTGATG 59.474 55.000 6.88 0.00 0.00 3.07
2009 3214 0.243907 CTTCGACGAGGTGGTGATGT 59.756 55.000 0.00 0.00 0.00 3.06
2039 3244 5.205056 AGGACCTTGAAGTATGTCTAGAGG 58.795 45.833 0.00 0.00 0.00 3.69
2040 3245 5.044030 AGGACCTTGAAGTATGTCTAGAGGA 60.044 44.000 0.00 0.00 0.00 3.71
2233 3441 4.022413 AGTAAAGAGAAGGGTTTGGAGC 57.978 45.455 0.00 0.00 0.00 4.70
2284 3492 1.855295 TGGCGTGGTTCTGATAGGTA 58.145 50.000 0.00 0.00 0.00 3.08
2330 3538 2.301009 GGAGACTTTAACCCACGAAGGA 59.699 50.000 2.46 0.00 41.22 3.36
2389 3597 0.250338 GGGTCCACGAAGAAGCAACT 60.250 55.000 0.00 0.00 0.00 3.16
2585 3793 2.094597 ACAAATGGTGCGTTGATGATGG 60.095 45.455 0.00 0.00 0.00 3.51
2603 3811 0.250467 GGACTCCTTGCTCTTGTGCA 60.250 55.000 0.00 0.00 41.65 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.448542 AGACCACAGCCCCACAGT 60.449 61.111 0.00 0.00 0.00 3.55
11 12 2.348998 GAGACCACAGCCCCACAG 59.651 66.667 0.00 0.00 0.00 3.66
103 221 3.924686 AGCTAACGTCCAAATCAAGTACG 59.075 43.478 0.00 0.00 39.37 3.67
133 251 2.286294 GCGTGGAGTCACATGATCATTC 59.714 50.000 5.16 0.28 43.79 2.67
179 297 1.270893 GCGGTCTTCTCTTGGAGGTTT 60.271 52.381 0.00 0.00 0.00 3.27
181 299 1.545706 GGCGGTCTTCTCTTGGAGGT 61.546 60.000 0.00 0.00 0.00 3.85
209 328 1.338674 CCGTCTAGGTGGAACATGCAA 60.339 52.381 0.00 0.00 44.52 4.08
272 394 1.269448 TCGGCACAAGCTTCCATTTTC 59.731 47.619 0.00 0.00 41.70 2.29
318 770 1.846782 CTAGCGTTCGACAAGGAATCG 59.153 52.381 0.00 0.00 41.00 3.34
395 847 1.214325 CATGTCGTGTCGGCACCTA 59.786 57.895 15.72 0.00 46.32 3.08
429 886 5.825679 TGTGTGGTGTTAAACTAAAGCAGAT 59.174 36.000 0.00 0.00 0.00 2.90
470 927 2.857483 CATGTGGACTGTACCAAACCA 58.143 47.619 0.00 0.00 41.87 3.67
472 929 2.504367 AGCATGTGGACTGTACCAAAC 58.496 47.619 0.00 0.00 41.87 2.93
490 950 5.236695 ACTCGAACCAAAAGAAGAAAGTAGC 59.763 40.000 0.00 0.00 0.00 3.58
532 992 3.014623 ACACGTCCGATTCTGTAGATGA 58.985 45.455 0.00 0.00 0.00 2.92
580 1040 3.241530 TCCAGCCAGTTCTGCGGT 61.242 61.111 0.00 0.00 32.87 5.68
613 1081 4.755411 ATGGTGTCCACAGAATACGTAAG 58.245 43.478 0.00 0.00 35.80 2.34
614 1082 4.464951 AGATGGTGTCCACAGAATACGTAA 59.535 41.667 0.00 0.00 35.80 3.18
615 1083 4.021229 AGATGGTGTCCACAGAATACGTA 58.979 43.478 0.00 0.00 35.80 3.57
616 1084 2.832129 AGATGGTGTCCACAGAATACGT 59.168 45.455 0.00 0.00 35.80 3.57
651 1158 2.588877 CCGCGTATGCCTTCTGGG 60.589 66.667 4.92 0.00 38.08 4.45
652 1159 3.272334 GCCGCGTATGCCTTCTGG 61.272 66.667 4.92 0.00 38.08 3.86
693 1205 4.671590 TCCGTGAGACTCGGGCCA 62.672 66.667 4.39 0.00 46.82 5.36
698 1210 0.099613 CATGTCCTCCGTGAGACTCG 59.900 60.000 0.00 0.00 31.20 4.18
700 1212 0.891373 CACATGTCCTCCGTGAGACT 59.109 55.000 0.00 0.00 34.01 3.24
704 1216 0.891904 TCGACACATGTCCTCCGTGA 60.892 55.000 6.44 0.00 41.86 4.35
731 1247 2.357638 TCGCGACGAATTGGCCAA 60.358 55.556 23.00 23.00 31.06 4.52
772 1302 1.672356 GCCTGCTGACATTGTCCGT 60.672 57.895 14.05 0.00 0.00 4.69
826 1356 4.499183 GAATGGACTCAGTTCTACAGTGG 58.501 47.826 0.00 0.00 0.00 4.00
972 1819 3.071580 GCTAGCTAGCTGGTGGTTG 57.928 57.895 33.71 9.04 45.62 3.77
1061 1911 3.007290 CGATCTGCAGATAATTCCTCCCA 59.993 47.826 28.78 0.00 34.37 4.37
1062 1912 3.259374 TCGATCTGCAGATAATTCCTCCC 59.741 47.826 28.78 12.10 34.37 4.30
1069 1919 2.733542 CGCCGATCGATCTGCAGATAAT 60.734 50.000 32.15 23.24 41.67 1.28
1242 2092 4.771356 GCTCGGCGTCGTAGTGCA 62.771 66.667 10.18 0.00 37.69 4.57
1408 2258 5.046159 ACCAACCTATCAAACCAATCTCGTA 60.046 40.000 0.00 0.00 0.00 3.43
1410 2260 4.261801 ACCAACCTATCAAACCAATCTCG 58.738 43.478 0.00 0.00 0.00 4.04
1411 2261 5.710099 TGAACCAACCTATCAAACCAATCTC 59.290 40.000 0.00 0.00 0.00 2.75
1414 2264 6.094881 CGTATGAACCAACCTATCAAACCAAT 59.905 38.462 0.00 0.00 0.00 3.16
1461 2335 4.201724 GCTATACAAACCAAGAAGAGCACG 60.202 45.833 0.00 0.00 0.00 5.34
1476 2350 9.569122 GGAAATTCTTATAACTGGGCTATACAA 57.431 33.333 0.00 0.00 0.00 2.41
1477 2351 8.945193 AGGAAATTCTTATAACTGGGCTATACA 58.055 33.333 0.00 0.00 0.00 2.29
1484 2358 7.615757 AGTCCAAAGGAAATTCTTATAACTGGG 59.384 37.037 0.00 0.00 31.38 4.45
1485 2359 8.581253 AGTCCAAAGGAAATTCTTATAACTGG 57.419 34.615 0.00 0.00 31.38 4.00
1486 2360 9.454859 AGAGTCCAAAGGAAATTCTTATAACTG 57.545 33.333 0.00 0.00 31.38 3.16
1502 2376 2.012673 GGCTATGTGCAGAGTCCAAAG 58.987 52.381 0.00 0.00 45.15 2.77
1503 2377 1.350684 TGGCTATGTGCAGAGTCCAAA 59.649 47.619 7.25 0.00 45.15 3.28
1509 2383 2.632028 ACCTATCTGGCTATGTGCAGAG 59.368 50.000 0.00 0.00 45.15 3.35
1510 2384 2.630098 GACCTATCTGGCTATGTGCAGA 59.370 50.000 0.00 0.00 45.15 4.26
1524 2398 5.298026 GGCAAAGAGAAATGGAAGACCTATC 59.702 44.000 0.00 0.00 37.04 2.08
1527 2401 3.075134 AGGCAAAGAGAAATGGAAGACCT 59.925 43.478 0.00 0.00 37.04 3.85
1555 2429 0.673333 ATTCATGAACGCAGCCGACA 60.673 50.000 11.07 0.00 38.29 4.35
1621 2820 4.080243 ACAATATGAACCCGGGTATGTCAA 60.080 41.667 30.52 17.04 0.00 3.18
1622 2821 3.456644 ACAATATGAACCCGGGTATGTCA 59.543 43.478 30.52 27.30 0.00 3.58
1647 2846 2.146342 AGATCGGTGCAACTGTTTCAG 58.854 47.619 0.00 0.00 45.64 3.02
1671 2871 2.875296 TCCAACCATCTTTCACAAGGG 58.125 47.619 0.00 0.00 0.00 3.95
1757 2962 2.158726 TCGGGAAGGCTACAAAACAAGT 60.159 45.455 0.00 0.00 0.00 3.16
1758 2963 2.484264 CTCGGGAAGGCTACAAAACAAG 59.516 50.000 0.00 0.00 0.00 3.16
1759 2964 2.500229 CTCGGGAAGGCTACAAAACAA 58.500 47.619 0.00 0.00 0.00 2.83
1760 2965 1.880646 GCTCGGGAAGGCTACAAAACA 60.881 52.381 0.00 0.00 0.00 2.83
1761 2966 0.803117 GCTCGGGAAGGCTACAAAAC 59.197 55.000 0.00 0.00 0.00 2.43
1762 2967 0.672401 CGCTCGGGAAGGCTACAAAA 60.672 55.000 0.00 0.00 0.00 2.44
1763 2968 1.079405 CGCTCGGGAAGGCTACAAA 60.079 57.895 0.00 0.00 0.00 2.83
1764 2969 1.945354 CTCGCTCGGGAAGGCTACAA 61.945 60.000 0.00 0.00 0.00 2.41
1765 2970 2.361992 TCGCTCGGGAAGGCTACA 60.362 61.111 0.00 0.00 0.00 2.74
1766 2971 2.413765 CTCGCTCGGGAAGGCTAC 59.586 66.667 0.00 0.00 0.00 3.58
1767 2972 3.528370 GCTCGCTCGGGAAGGCTA 61.528 66.667 0.00 0.00 0.00 3.93
1770 2975 4.521062 CAGGCTCGCTCGGGAAGG 62.521 72.222 0.00 0.00 0.00 3.46
1771 2976 4.521062 CCAGGCTCGCTCGGGAAG 62.521 72.222 0.00 0.00 0.00 3.46
1784 2989 4.087892 CTGACTCCACGGGCCAGG 62.088 72.222 8.08 4.75 0.00 4.45
1785 2990 4.767255 GCTGACTCCACGGGCCAG 62.767 72.222 4.39 1.85 0.00 4.85
1787 2992 4.767255 CAGCTGACTCCACGGGCC 62.767 72.222 8.42 0.00 0.00 5.80
1788 2993 4.767255 CCAGCTGACTCCACGGGC 62.767 72.222 17.39 0.00 0.00 6.13
1789 2994 4.767255 GCCAGCTGACTCCACGGG 62.767 72.222 17.39 0.00 0.00 5.28
1790 2995 3.655810 GAGCCAGCTGACTCCACGG 62.656 68.421 18.50 0.00 0.00 4.94
1791 2996 2.125753 GAGCCAGCTGACTCCACG 60.126 66.667 18.50 0.00 0.00 4.94
1792 2997 0.952984 GTTGAGCCAGCTGACTCCAC 60.953 60.000 25.01 20.69 31.65 4.02
1793 2998 1.372683 GTTGAGCCAGCTGACTCCA 59.627 57.895 25.01 13.38 31.65 3.86
1794 2999 0.250467 TTGTTGAGCCAGCTGACTCC 60.250 55.000 25.01 12.56 31.65 3.85
1795 3000 1.534595 CTTTGTTGAGCCAGCTGACTC 59.465 52.381 21.91 21.91 0.00 3.36
1796 3001 1.602311 CTTTGTTGAGCCAGCTGACT 58.398 50.000 17.39 9.44 0.00 3.41
1797 3002 0.039708 GCTTTGTTGAGCCAGCTGAC 60.040 55.000 17.39 2.52 36.66 3.51
1798 3003 0.179009 AGCTTTGTTGAGCCAGCTGA 60.179 50.000 17.39 0.00 43.74 4.26
1799 3004 2.338381 AGCTTTGTTGAGCCAGCTG 58.662 52.632 6.78 6.78 43.74 4.24
1800 3005 0.179009 TCAGCTTTGTTGAGCCAGCT 60.179 50.000 0.00 0.00 43.74 4.24
1801 3006 0.039708 GTCAGCTTTGTTGAGCCAGC 60.040 55.000 0.00 0.00 43.74 4.85
1802 3007 1.266175 CAGTCAGCTTTGTTGAGCCAG 59.734 52.381 0.00 0.00 43.74 4.85
1803 3008 1.311859 CAGTCAGCTTTGTTGAGCCA 58.688 50.000 0.00 0.00 43.74 4.75
1804 3009 1.002033 CACAGTCAGCTTTGTTGAGCC 60.002 52.381 0.00 0.00 43.74 4.70
1805 3010 1.002033 CCACAGTCAGCTTTGTTGAGC 60.002 52.381 0.00 0.00 43.02 4.26
1806 3011 2.292267 ACCACAGTCAGCTTTGTTGAG 58.708 47.619 0.00 0.00 0.00 3.02
1807 3012 2.418368 ACCACAGTCAGCTTTGTTGA 57.582 45.000 0.00 0.00 0.00 3.18
1808 3013 4.630894 TTTACCACAGTCAGCTTTGTTG 57.369 40.909 0.00 0.00 0.00 3.33
1809 3014 4.461081 TGTTTTACCACAGTCAGCTTTGTT 59.539 37.500 0.00 0.00 0.00 2.83
1810 3015 4.013728 TGTTTTACCACAGTCAGCTTTGT 58.986 39.130 0.00 0.00 0.00 2.83
1811 3016 4.498009 CCTGTTTTACCACAGTCAGCTTTG 60.498 45.833 0.44 0.00 42.45 2.77
1812 3017 3.632145 CCTGTTTTACCACAGTCAGCTTT 59.368 43.478 0.44 0.00 42.45 3.51
1813 3018 3.214328 CCTGTTTTACCACAGTCAGCTT 58.786 45.455 0.44 0.00 42.45 3.74
1814 3019 2.851195 CCTGTTTTACCACAGTCAGCT 58.149 47.619 0.44 0.00 42.45 4.24
1815 3020 1.266989 GCCTGTTTTACCACAGTCAGC 59.733 52.381 0.44 0.00 42.45 4.26
1816 3021 2.549754 CTGCCTGTTTTACCACAGTCAG 59.450 50.000 0.00 0.00 42.59 3.51
1817 3022 2.171659 TCTGCCTGTTTTACCACAGTCA 59.828 45.455 0.44 0.00 42.45 3.41
1818 3023 2.846193 TCTGCCTGTTTTACCACAGTC 58.154 47.619 0.44 0.00 42.45 3.51
1819 3024 3.290948 TTCTGCCTGTTTTACCACAGT 57.709 42.857 0.44 0.00 42.45 3.55
1820 3025 4.647424 TTTTCTGCCTGTTTTACCACAG 57.353 40.909 0.00 0.00 43.46 3.66
1821 3026 4.646945 TGATTTTCTGCCTGTTTTACCACA 59.353 37.500 0.00 0.00 0.00 4.17
1822 3027 5.195001 TGATTTTCTGCCTGTTTTACCAC 57.805 39.130 0.00 0.00 0.00 4.16
1823 3028 5.127845 TGTTGATTTTCTGCCTGTTTTACCA 59.872 36.000 0.00 0.00 0.00 3.25
1824 3029 5.596845 TGTTGATTTTCTGCCTGTTTTACC 58.403 37.500 0.00 0.00 0.00 2.85
1825 3030 7.147976 AGATGTTGATTTTCTGCCTGTTTTAC 58.852 34.615 0.00 0.00 0.00 2.01
1826 3031 7.288810 AGATGTTGATTTTCTGCCTGTTTTA 57.711 32.000 0.00 0.00 0.00 1.52
1827 3032 6.165700 AGATGTTGATTTTCTGCCTGTTTT 57.834 33.333 0.00 0.00 0.00 2.43
1828 3033 5.796424 AGATGTTGATTTTCTGCCTGTTT 57.204 34.783 0.00 0.00 0.00 2.83
1829 3034 5.563475 CGAAGATGTTGATTTTCTGCCTGTT 60.563 40.000 0.00 0.00 0.00 3.16
1830 3035 4.083110 CGAAGATGTTGATTTTCTGCCTGT 60.083 41.667 0.00 0.00 0.00 4.00
1831 3036 4.083110 ACGAAGATGTTGATTTTCTGCCTG 60.083 41.667 0.00 0.00 0.00 4.85
1832 3037 4.074970 ACGAAGATGTTGATTTTCTGCCT 58.925 39.130 0.00 0.00 0.00 4.75
1833 3038 4.425577 ACGAAGATGTTGATTTTCTGCC 57.574 40.909 0.00 0.00 0.00 4.85
1834 3039 7.910304 ACTATACGAAGATGTTGATTTTCTGC 58.090 34.615 0.00 0.00 0.00 4.26
1839 3044 9.436957 AGTCAAACTATACGAAGATGTTGATTT 57.563 29.630 0.00 0.00 0.00 2.17
1840 3045 8.873830 CAGTCAAACTATACGAAGATGTTGATT 58.126 33.333 0.00 0.00 0.00 2.57
1841 3046 7.010552 GCAGTCAAACTATACGAAGATGTTGAT 59.989 37.037 0.00 0.00 0.00 2.57
1842 3047 6.310467 GCAGTCAAACTATACGAAGATGTTGA 59.690 38.462 0.00 0.00 0.00 3.18
1843 3048 6.470160 GCAGTCAAACTATACGAAGATGTTG 58.530 40.000 0.00 0.00 0.00 3.33
1844 3049 5.288712 CGCAGTCAAACTATACGAAGATGTT 59.711 40.000 0.00 0.00 0.00 2.71
1845 3050 4.798907 CGCAGTCAAACTATACGAAGATGT 59.201 41.667 0.00 0.00 0.00 3.06
1846 3051 4.798907 ACGCAGTCAAACTATACGAAGATG 59.201 41.667 0.00 0.00 29.74 2.90
1847 3052 4.798907 CACGCAGTCAAACTATACGAAGAT 59.201 41.667 0.00 0.00 41.61 2.40
1848 3053 4.163552 CACGCAGTCAAACTATACGAAGA 58.836 43.478 0.00 0.00 41.61 2.87
1849 3054 3.241678 GCACGCAGTCAAACTATACGAAG 60.242 47.826 0.00 0.00 41.61 3.79
1850 3055 2.664568 GCACGCAGTCAAACTATACGAA 59.335 45.455 0.00 0.00 41.61 3.85
1851 3056 2.256174 GCACGCAGTCAAACTATACGA 58.744 47.619 0.00 0.00 41.61 3.43
1852 3057 1.989864 TGCACGCAGTCAAACTATACG 59.010 47.619 0.00 0.00 41.61 3.06
1853 3058 5.462068 TGATATGCACGCAGTCAAACTATAC 59.538 40.000 7.26 0.00 41.61 1.47
1854 3059 5.596845 TGATATGCACGCAGTCAAACTATA 58.403 37.500 7.26 0.00 41.61 1.31
1855 3060 4.441792 TGATATGCACGCAGTCAAACTAT 58.558 39.130 7.26 0.00 41.61 2.12
1856 3061 3.855858 TGATATGCACGCAGTCAAACTA 58.144 40.909 7.26 0.00 41.61 2.24
1857 3062 2.698803 TGATATGCACGCAGTCAAACT 58.301 42.857 7.26 0.00 41.61 2.66
1858 3063 3.310774 AGATGATATGCACGCAGTCAAAC 59.689 43.478 12.16 9.99 41.61 2.93
1859 3064 3.534554 AGATGATATGCACGCAGTCAAA 58.465 40.909 12.16 0.00 41.61 2.69
1860 3065 3.183793 AGATGATATGCACGCAGTCAA 57.816 42.857 12.16 0.28 41.61 3.18
1861 3066 2.896745 AGATGATATGCACGCAGTCA 57.103 45.000 10.97 10.97 41.61 3.41
1862 3067 3.249091 CCTAGATGATATGCACGCAGTC 58.751 50.000 0.00 0.00 41.61 3.51
1864 3069 1.998315 GCCTAGATGATATGCACGCAG 59.002 52.381 0.00 0.00 0.00 5.18
1865 3070 1.620323 AGCCTAGATGATATGCACGCA 59.380 47.619 0.00 0.00 0.00 5.24
1866 3071 1.998315 CAGCCTAGATGATATGCACGC 59.002 52.381 0.00 0.00 0.00 5.34
1867 3072 1.998315 GCAGCCTAGATGATATGCACG 59.002 52.381 0.00 0.00 33.92 5.34
1868 3073 3.049708 TGCAGCCTAGATGATATGCAC 57.950 47.619 0.00 0.00 38.64 4.57
1869 3074 3.606687 CATGCAGCCTAGATGATATGCA 58.393 45.455 0.00 0.00 46.50 3.96
1870 3075 2.943690 CCATGCAGCCTAGATGATATGC 59.056 50.000 0.00 0.00 0.00 3.14
1871 3076 3.542648 CCCATGCAGCCTAGATGATATG 58.457 50.000 0.00 0.00 0.00 1.78
1872 3077 2.508716 CCCCATGCAGCCTAGATGATAT 59.491 50.000 0.00 0.00 0.00 1.63
1873 3078 1.911357 CCCCATGCAGCCTAGATGATA 59.089 52.381 0.00 0.00 0.00 2.15
1874 3079 0.697079 CCCCATGCAGCCTAGATGAT 59.303 55.000 0.00 0.00 0.00 2.45
1875 3080 0.695462 ACCCCATGCAGCCTAGATGA 60.695 55.000 0.00 0.00 0.00 2.92
1876 3081 0.536687 CACCCCATGCAGCCTAGATG 60.537 60.000 0.00 0.00 0.00 2.90
1877 3082 0.990282 ACACCCCATGCAGCCTAGAT 60.990 55.000 0.00 0.00 0.00 1.98
1878 3083 0.326143 TACACCCCATGCAGCCTAGA 60.326 55.000 0.00 0.00 0.00 2.43
1879 3084 0.546122 TTACACCCCATGCAGCCTAG 59.454 55.000 0.00 0.00 0.00 3.02
1880 3085 0.254747 GTTACACCCCATGCAGCCTA 59.745 55.000 0.00 0.00 0.00 3.93
1881 3086 1.000896 GTTACACCCCATGCAGCCT 60.001 57.895 0.00 0.00 0.00 4.58
1882 3087 2.406616 CGTTACACCCCATGCAGCC 61.407 63.158 0.00 0.00 0.00 4.85
1883 3088 0.958382 TTCGTTACACCCCATGCAGC 60.958 55.000 0.00 0.00 0.00 5.25
1884 3089 1.468520 CTTTCGTTACACCCCATGCAG 59.531 52.381 0.00 0.00 0.00 4.41
1885 3090 1.529226 CTTTCGTTACACCCCATGCA 58.471 50.000 0.00 0.00 0.00 3.96
1886 3091 0.808755 CCTTTCGTTACACCCCATGC 59.191 55.000 0.00 0.00 0.00 4.06
1887 3092 2.194201 ACCTTTCGTTACACCCCATG 57.806 50.000 0.00 0.00 0.00 3.66
1888 3093 2.908351 ACTACCTTTCGTTACACCCCAT 59.092 45.455 0.00 0.00 0.00 4.00
1889 3094 2.299867 GACTACCTTTCGTTACACCCCA 59.700 50.000 0.00 0.00 0.00 4.96
1890 3095 2.564504 AGACTACCTTTCGTTACACCCC 59.435 50.000 0.00 0.00 0.00 4.95
1891 3096 3.006217 ACAGACTACCTTTCGTTACACCC 59.994 47.826 0.00 0.00 0.00 4.61
1892 3097 4.248691 ACAGACTACCTTTCGTTACACC 57.751 45.455 0.00 0.00 0.00 4.16
1893 3098 4.446719 CCAACAGACTACCTTTCGTTACAC 59.553 45.833 0.00 0.00 0.00 2.90
1894 3099 4.501915 CCCAACAGACTACCTTTCGTTACA 60.502 45.833 0.00 0.00 0.00 2.41
1895 3100 3.992427 CCCAACAGACTACCTTTCGTTAC 59.008 47.826 0.00 0.00 0.00 2.50
1896 3101 3.642848 ACCCAACAGACTACCTTTCGTTA 59.357 43.478 0.00 0.00 0.00 3.18
1897 3102 2.436911 ACCCAACAGACTACCTTTCGTT 59.563 45.455 0.00 0.00 0.00 3.85
1898 3103 2.044758 ACCCAACAGACTACCTTTCGT 58.955 47.619 0.00 0.00 0.00 3.85
1899 3104 2.806244 CAACCCAACAGACTACCTTTCG 59.194 50.000 0.00 0.00 0.00 3.46
1900 3105 3.813724 GACAACCCAACAGACTACCTTTC 59.186 47.826 0.00 0.00 0.00 2.62
1901 3106 3.434596 GGACAACCCAACAGACTACCTTT 60.435 47.826 0.00 0.00 34.14 3.11
1902 3107 2.105993 GGACAACCCAACAGACTACCTT 59.894 50.000 0.00 0.00 34.14 3.50
1903 3108 1.697982 GGACAACCCAACAGACTACCT 59.302 52.381 0.00 0.00 34.14 3.08
1904 3109 1.607251 CGGACAACCCAACAGACTACC 60.607 57.143 0.00 0.00 34.14 3.18
1905 3110 1.792006 CGGACAACCCAACAGACTAC 58.208 55.000 0.00 0.00 34.14 2.73
1906 3111 0.034337 GCGGACAACCCAACAGACTA 59.966 55.000 0.00 0.00 34.14 2.59
1907 3112 1.227853 GCGGACAACCCAACAGACT 60.228 57.895 0.00 0.00 34.14 3.24
1908 3113 0.818040 AAGCGGACAACCCAACAGAC 60.818 55.000 0.00 0.00 34.14 3.51
1909 3114 0.817634 CAAGCGGACAACCCAACAGA 60.818 55.000 0.00 0.00 34.14 3.41
1910 3115 1.101049 ACAAGCGGACAACCCAACAG 61.101 55.000 0.00 0.00 34.14 3.16
1911 3116 0.681564 AACAAGCGGACAACCCAACA 60.682 50.000 0.00 0.00 34.14 3.33
1912 3117 0.458260 AAACAAGCGGACAACCCAAC 59.542 50.000 0.00 0.00 34.14 3.77
1913 3118 1.950909 CTAAACAAGCGGACAACCCAA 59.049 47.619 0.00 0.00 34.14 4.12
1914 3119 1.600023 CTAAACAAGCGGACAACCCA 58.400 50.000 0.00 0.00 34.14 4.51
1915 3120 0.879090 CCTAAACAAGCGGACAACCC 59.121 55.000 0.00 0.00 0.00 4.11
1916 3121 0.240145 GCCTAAACAAGCGGACAACC 59.760 55.000 0.00 0.00 0.00 3.77
1917 3122 3.767287 GCCTAAACAAGCGGACAAC 57.233 52.632 0.00 0.00 0.00 3.32
1924 3129 3.560826 TGTTTGCGCCTAAACAAGC 57.439 47.368 20.01 3.54 44.84 4.01
1927 3132 1.066303 CCTTGTGTTTGCGCCTAAACA 59.934 47.619 18.81 18.81 45.41 2.83
1928 3133 1.766069 CCTTGTGTTTGCGCCTAAAC 58.234 50.000 14.54 14.54 40.18 2.01
1929 3134 0.031449 GCCTTGTGTTTGCGCCTAAA 59.969 50.000 4.18 0.00 0.00 1.85
1930 3135 1.103987 TGCCTTGTGTTTGCGCCTAA 61.104 50.000 4.18 0.00 0.00 2.69
1931 3136 0.893270 ATGCCTTGTGTTTGCGCCTA 60.893 50.000 4.18 0.00 0.00 3.93
1932 3137 2.202395 ATGCCTTGTGTTTGCGCCT 61.202 52.632 4.18 0.00 0.00 5.52
1933 3138 2.023223 CATGCCTTGTGTTTGCGCC 61.023 57.895 4.18 0.00 0.00 6.53
1934 3139 2.023223 CCATGCCTTGTGTTTGCGC 61.023 57.895 0.00 0.00 0.00 6.09
1935 3140 0.940519 CACCATGCCTTGTGTTTGCG 60.941 55.000 0.00 0.00 0.00 4.85
1936 3141 0.104671 ACACCATGCCTTGTGTTTGC 59.895 50.000 0.21 0.00 42.82 3.68
1941 3146 0.752054 ACCAAACACCATGCCTTGTG 59.248 50.000 0.00 0.00 38.44 3.33
1942 3147 1.412343 GAACCAAACACCATGCCTTGT 59.588 47.619 0.00 0.00 0.00 3.16
1943 3148 1.270252 GGAACCAAACACCATGCCTTG 60.270 52.381 0.00 0.00 0.00 3.61
1944 3149 1.047801 GGAACCAAACACCATGCCTT 58.952 50.000 0.00 0.00 0.00 4.35
1945 3150 0.105760 TGGAACCAAACACCATGCCT 60.106 50.000 0.00 0.00 0.00 4.75
1946 3151 0.975887 ATGGAACCAAACACCATGCC 59.024 50.000 0.00 0.00 41.96 4.40
1947 3152 1.066929 GGATGGAACCAAACACCATGC 60.067 52.381 0.00 0.00 43.30 4.06
1948 3153 2.246469 TGGATGGAACCAAACACCATG 58.754 47.619 0.00 0.00 43.30 3.66
1949 3154 2.692709 TGGATGGAACCAAACACCAT 57.307 45.000 0.00 0.00 45.50 3.55
1950 3155 2.461300 TTGGATGGAACCAAACACCA 57.539 45.000 0.00 3.47 45.36 4.17
1956 3161 2.956132 ACATGTGTTGGATGGAACCAA 58.044 42.857 0.00 0.00 46.02 3.67
1957 3162 2.673775 ACATGTGTTGGATGGAACCA 57.326 45.000 0.00 0.00 38.24 3.67
1968 3173 5.555017 AGAGCTTATCAGACAACATGTGTT 58.445 37.500 0.00 0.00 41.96 3.32
1969 3174 5.157940 AGAGCTTATCAGACAACATGTGT 57.842 39.130 0.00 0.00 45.74 3.72
1970 3175 5.220359 CGAAGAGCTTATCAGACAACATGTG 60.220 44.000 0.00 0.00 0.00 3.21
1971 3176 4.867047 CGAAGAGCTTATCAGACAACATGT 59.133 41.667 0.00 0.00 0.00 3.21
1972 3177 5.005203 GTCGAAGAGCTTATCAGACAACATG 59.995 44.000 13.99 0.00 36.95 3.21
1973 3178 5.105752 GTCGAAGAGCTTATCAGACAACAT 58.894 41.667 13.99 0.00 36.95 2.71
1974 3179 4.486090 GTCGAAGAGCTTATCAGACAACA 58.514 43.478 13.99 0.00 36.95 3.33
1975 3180 3.544285 CGTCGAAGAGCTTATCAGACAAC 59.456 47.826 16.60 0.00 36.95 3.32
1976 3181 3.439129 TCGTCGAAGAGCTTATCAGACAA 59.561 43.478 0.00 4.63 36.95 3.18
1977 3182 3.007635 TCGTCGAAGAGCTTATCAGACA 58.992 45.455 0.00 7.93 36.95 3.41
1978 3183 3.547214 CCTCGTCGAAGAGCTTATCAGAC 60.547 52.174 21.22 1.73 36.95 3.51
1979 3184 2.614520 CCTCGTCGAAGAGCTTATCAGA 59.385 50.000 21.22 0.00 36.95 3.27
1980 3185 2.356382 ACCTCGTCGAAGAGCTTATCAG 59.644 50.000 21.22 9.40 36.95 2.90
1981 3186 2.097629 CACCTCGTCGAAGAGCTTATCA 59.902 50.000 21.22 0.00 36.95 2.15
1982 3187 2.541999 CCACCTCGTCGAAGAGCTTATC 60.542 54.545 21.22 0.00 36.95 1.75
1983 3188 1.405821 CCACCTCGTCGAAGAGCTTAT 59.594 52.381 21.22 5.08 36.95 1.73
1984 3189 0.809385 CCACCTCGTCGAAGAGCTTA 59.191 55.000 21.22 0.00 36.95 3.09
1985 3190 1.179814 ACCACCTCGTCGAAGAGCTT 61.180 55.000 21.22 8.61 36.95 3.74
1986 3191 1.604023 ACCACCTCGTCGAAGAGCT 60.604 57.895 21.22 6.60 36.95 4.09
1987 3192 1.444553 CACCACCTCGTCGAAGAGC 60.445 63.158 21.22 0.00 36.95 4.09
1988 3193 0.811915 ATCACCACCTCGTCGAAGAG 59.188 55.000 19.92 19.92 36.95 2.85
1989 3194 0.526211 CATCACCACCTCGTCGAAGA 59.474 55.000 0.03 0.03 0.00 2.87
1990 3195 0.243907 ACATCACCACCTCGTCGAAG 59.756 55.000 0.00 0.00 0.00 3.79
1991 3196 0.677288 AACATCACCACCTCGTCGAA 59.323 50.000 0.00 0.00 0.00 3.71
1992 3197 1.200716 GTAACATCACCACCTCGTCGA 59.799 52.381 0.00 0.00 0.00 4.20
1993 3198 1.201647 AGTAACATCACCACCTCGTCG 59.798 52.381 0.00 0.00 0.00 5.12
1994 3199 2.029290 ACAGTAACATCACCACCTCGTC 60.029 50.000 0.00 0.00 0.00 4.20
1995 3200 1.968493 ACAGTAACATCACCACCTCGT 59.032 47.619 0.00 0.00 0.00 4.18
1996 3201 2.743636 ACAGTAACATCACCACCTCG 57.256 50.000 0.00 0.00 0.00 4.63
1997 3202 3.767673 TCCTACAGTAACATCACCACCTC 59.232 47.826 0.00 0.00 0.00 3.85
1998 3203 3.514309 GTCCTACAGTAACATCACCACCT 59.486 47.826 0.00 0.00 0.00 4.00
1999 3204 3.369157 GGTCCTACAGTAACATCACCACC 60.369 52.174 0.00 0.00 0.00 4.61
2000 3205 3.514309 AGGTCCTACAGTAACATCACCAC 59.486 47.826 0.00 0.00 0.00 4.16
2001 3206 3.786553 AGGTCCTACAGTAACATCACCA 58.213 45.455 0.00 0.00 0.00 4.17
2002 3207 4.222145 TCAAGGTCCTACAGTAACATCACC 59.778 45.833 0.00 0.00 0.00 4.02
2003 3208 5.401531 TCAAGGTCCTACAGTAACATCAC 57.598 43.478 0.00 0.00 0.00 3.06
2004 3209 5.542635 ACTTCAAGGTCCTACAGTAACATCA 59.457 40.000 0.00 0.00 0.00 3.07
2005 3210 6.038997 ACTTCAAGGTCCTACAGTAACATC 57.961 41.667 0.00 0.00 0.00 3.06
2006 3211 7.180408 ACATACTTCAAGGTCCTACAGTAACAT 59.820 37.037 8.23 0.00 0.00 2.71
2007 3212 6.495872 ACATACTTCAAGGTCCTACAGTAACA 59.504 38.462 8.23 0.00 0.00 2.41
2008 3213 6.932947 ACATACTTCAAGGTCCTACAGTAAC 58.067 40.000 8.23 0.00 0.00 2.50
2009 3214 6.952358 AGACATACTTCAAGGTCCTACAGTAA 59.048 38.462 8.23 0.00 0.00 2.24
2090 3298 9.912634 CTGAAATCTGCCAAACTCTAAAATTAA 57.087 29.630 0.00 0.00 0.00 1.40
2091 3299 8.028938 GCTGAAATCTGCCAAACTCTAAAATTA 58.971 33.333 1.22 0.00 35.17 1.40
2114 3322 4.808364 GCTTGACTTGTCCTAAGATAGCTG 59.192 45.833 0.00 0.00 0.00 4.24
2233 3441 3.670055 GTGTCTCCAATTGCGTTTGAATG 59.330 43.478 0.00 0.00 0.00 2.67
2284 3492 4.099419 TCAACATGGATGTACGATAGCACT 59.901 41.667 0.00 0.00 40.80 4.40
2317 3525 2.178580 ACCGTTATCCTTCGTGGGTTA 58.821 47.619 0.00 0.00 36.20 2.85
2330 3538 1.808390 GGACTCGCGCAACCGTTAT 60.808 57.895 8.75 0.00 36.67 1.89
2389 3597 1.064017 GGCCATGGTGGGATAGACAAA 60.064 52.381 14.67 0.00 38.19 2.83
2585 3793 3.312404 TGCACAAGAGCAAGGAGTC 57.688 52.632 0.00 0.00 42.46 3.36
2603 3811 5.192522 AGTGTTGGGGAGACTATCATTTGAT 59.807 40.000 0.00 0.00 38.51 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.