Multiple sequence alignment - TraesCS2B01G541300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G541300 chr2B 100.000 2258 0 0 1 2258 737634276 737636533 0.000000e+00 4170.0
1 TraesCS2B01G541300 chr2B 83.281 1268 127 52 44 1296 737685351 737686548 0.000000e+00 1088.0
2 TraesCS2B01G541300 chr2B 81.741 471 65 13 44 501 737625044 737625506 7.620000e-100 374.0
3 TraesCS2B01G541300 chr2B 84.000 250 20 4 1450 1679 737686721 737686970 2.920000e-54 222.0
4 TraesCS2B01G541300 chr2B 88.462 182 19 2 993 1173 738175984 738176164 3.780000e-53 219.0
5 TraesCS2B01G541300 chr2B 93.407 91 5 1 622 712 737623922 737624011 1.410000e-27 134.0
6 TraesCS2B01G541300 chr2B 97.778 45 1 0 2125 2169 737636370 737636414 6.690000e-11 78.7
7 TraesCS2B01G541300 chr2B 97.778 45 1 0 2095 2139 737636400 737636444 6.690000e-11 78.7
8 TraesCS2B01G541300 chr2A 82.581 1263 133 42 44 1295 738039450 738040636 0.000000e+00 1033.0
9 TraesCS2B01G541300 chr2A 81.360 853 79 44 1450 2258 738041075 738041891 2.460000e-174 621.0
10 TraesCS2B01G541300 chr2A 82.353 510 51 21 785 1279 738113216 738113701 7.510000e-110 407.0
11 TraesCS2B01G541300 chr2A 78.704 648 79 30 44 667 738029616 738030228 5.890000e-101 377.0
12 TraesCS2B01G541300 chr2A 87.778 180 22 0 994 1173 738202598 738202777 6.320000e-51 211.0
13 TraesCS2B01G541300 chr2A 86.170 188 14 6 708 891 738050502 738050681 2.290000e-45 193.0
14 TraesCS2B01G541300 chr2D 90.430 721 36 11 656 1357 606514005 606514711 0.000000e+00 918.0
15 TraesCS2B01G541300 chr2D 83.634 721 77 20 1450 2138 606514833 606515544 6.800000e-180 640.0
16 TraesCS2B01G541300 chr2D 93.381 423 17 5 708 1126 606549556 606549971 1.150000e-172 616.0
17 TraesCS2B01G541300 chr2D 84.146 328 20 19 997 1324 606587133 606587428 2.840000e-74 289.0
18 TraesCS2B01G541300 chr2D 83.482 224 34 3 994 1217 606637244 606637464 2.940000e-49 206.0
19 TraesCS2B01G541300 chr2D 80.660 212 36 3 44 250 606513791 606514002 2.320000e-35 159.0
20 TraesCS2B01G541300 chr2D 86.806 144 13 6 1144 1285 606549938 606550077 3.000000e-34 156.0
21 TraesCS2B01G541300 chr2D 80.723 166 13 6 1488 1635 606587769 606587933 6.590000e-21 111.0
22 TraesCS2B01G541300 chr2D 95.000 40 2 0 1411 1450 565938366 565938405 1.870000e-06 63.9
23 TraesCS2B01G541300 chr7A 100.000 36 0 0 1415 1450 266968181 266968146 1.450000e-07 67.6
24 TraesCS2B01G541300 chr6D 97.368 38 1 0 1413 1450 312732303 312732340 5.210000e-07 65.8
25 TraesCS2B01G541300 chr6D 97.368 38 1 0 1413 1450 437959780 437959817 5.210000e-07 65.8
26 TraesCS2B01G541300 chr5A 97.368 38 1 0 1413 1450 468934190 468934227 5.210000e-07 65.8
27 TraesCS2B01G541300 chr4D 97.368 38 1 0 1413 1450 26481822 26481859 5.210000e-07 65.8
28 TraesCS2B01G541300 chr6B 95.122 41 1 1 1411 1450 558924686 558924726 1.870000e-06 63.9
29 TraesCS2B01G541300 chr6A 95.000 40 2 0 1413 1452 141847382 141847421 1.870000e-06 63.9
30 TraesCS2B01G541300 chr1D 100.000 33 0 0 1418 1450 105339135 105339103 6.730000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G541300 chr2B 737634276 737636533 2257 False 1442.466667 4170 98.518667 1 2258 3 chr2B.!!$F3 2257
1 TraesCS2B01G541300 chr2B 737685351 737686970 1619 False 655.000000 1088 83.640500 44 1679 2 chr2B.!!$F4 1635
2 TraesCS2B01G541300 chr2B 737623922 737625506 1584 False 254.000000 374 87.574000 44 712 2 chr2B.!!$F2 668
3 TraesCS2B01G541300 chr2A 738039450 738041891 2441 False 827.000000 1033 81.970500 44 2258 2 chr2A.!!$F5 2214
4 TraesCS2B01G541300 chr2A 738029616 738030228 612 False 377.000000 377 78.704000 44 667 1 chr2A.!!$F1 623
5 TraesCS2B01G541300 chr2D 606513791 606515544 1753 False 572.333333 918 84.908000 44 2138 3 chr2D.!!$F3 2094
6 TraesCS2B01G541300 chr2D 606549556 606550077 521 False 386.000000 616 90.093500 708 1285 2 chr2D.!!$F4 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
505 1612 0.03601 ACTCCGGCCTTGATCTGTTG 60.036 55.0 0.0 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2128 3652 0.251916 TCCGTGAATGAAATCGGCCT 59.748 50.0 0.0 0.0 42.28 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 1179 2.478709 CCAAATAAATTAGGCGCGTGCA 60.479 45.455 24.18 1.91 45.35 4.57
123 1208 5.858381 TCTCTGCTCTTCACTTAACACATT 58.142 37.500 0.00 0.00 0.00 2.71
134 1219 7.397892 TCACTTAACACATTGACAAGGAAAA 57.602 32.000 6.88 0.00 0.00 2.29
137 1222 6.756542 ACTTAACACATTGACAAGGAAAAAGC 59.243 34.615 6.88 0.00 0.00 3.51
204 1294 0.179062 GCAGACAGATGGCGAGGAAT 60.179 55.000 0.00 0.00 0.00 3.01
218 1308 3.448686 CGAGGAATAGAAGCATCACGTT 58.551 45.455 0.00 0.00 0.00 3.99
233 1323 2.672874 TCACGTTGATGCTGCAAGATAC 59.327 45.455 6.36 2.05 34.07 2.24
250 1340 6.628185 CAAGATACGTGTAAAAGGGACTAGT 58.372 40.000 0.00 0.00 38.49 2.57
251 1341 6.205101 AGATACGTGTAAAAGGGACTAGTG 57.795 41.667 0.00 0.00 38.49 2.74
307 1400 5.251601 ACGCTAGAGTATTTCTTCAGGAC 57.748 43.478 0.00 0.00 37.36 3.85
311 1404 6.199908 CGCTAGAGTATTTCTTCAGGACATTG 59.800 42.308 0.00 0.00 37.36 2.82
321 1414 6.808008 TCTTCAGGACATTGATCTGTTTTC 57.192 37.500 0.00 0.00 0.00 2.29
331 1424 3.349927 TGATCTGTTTTCTCCATGGCAG 58.650 45.455 6.96 7.68 0.00 4.85
335 1428 2.229784 CTGTTTTCTCCATGGCAGGAAC 59.770 50.000 6.96 10.01 37.20 3.62
364 1457 1.978580 ACTTCCTAGTGACTTGTGGGG 59.021 52.381 0.00 0.00 31.99 4.96
373 1466 5.888982 AGTGACTTGTGGGGTTATATAGG 57.111 43.478 0.00 0.00 0.00 2.57
377 1470 1.750022 TGTGGGGTTATATAGGGGGC 58.250 55.000 0.00 0.00 0.00 5.80
381 1474 0.252197 GGGTTATATAGGGGGCGCAG 59.748 60.000 10.83 0.00 0.00 5.18
410 1503 5.738370 CGAGCGTAATCAGGAAAAATAAGG 58.262 41.667 0.00 0.00 0.00 2.69
437 1530 3.119388 GCCATTCATGTACAATGTGTGCT 60.119 43.478 0.00 0.00 33.97 4.40
447 1550 2.274437 CAATGTGTGCTACGCTCATCT 58.726 47.619 0.00 0.00 34.62 2.90
466 1573 8.748412 GCTCATCTACTTATTATCAGGTCATCT 58.252 37.037 0.00 0.00 0.00 2.90
478 1585 6.744175 ATCAGGTCATCTTACTGTCATGAT 57.256 37.500 0.00 0.00 33.21 2.45
479 1586 6.550938 TCAGGTCATCTTACTGTCATGATT 57.449 37.500 0.00 0.00 34.02 2.57
480 1587 7.660030 TCAGGTCATCTTACTGTCATGATTA 57.340 36.000 0.00 0.00 34.02 1.75
481 1588 8.078060 TCAGGTCATCTTACTGTCATGATTAA 57.922 34.615 0.00 0.00 34.02 1.40
482 1589 7.981789 TCAGGTCATCTTACTGTCATGATTAAC 59.018 37.037 0.00 0.00 34.02 2.01
483 1590 7.984050 CAGGTCATCTTACTGTCATGATTAACT 59.016 37.037 0.00 0.00 0.00 2.24
484 1591 7.984050 AGGTCATCTTACTGTCATGATTAACTG 59.016 37.037 0.00 0.00 0.00 3.16
485 1592 7.225538 GGTCATCTTACTGTCATGATTAACTGG 59.774 40.741 0.00 0.00 0.00 4.00
486 1593 7.981789 GTCATCTTACTGTCATGATTAACTGGA 59.018 37.037 0.00 0.00 0.00 3.86
487 1594 7.981789 TCATCTTACTGTCATGATTAACTGGAC 59.018 37.037 0.00 0.00 0.00 4.02
488 1595 7.482169 TCTTACTGTCATGATTAACTGGACT 57.518 36.000 0.00 0.00 0.00 3.85
489 1596 7.548097 TCTTACTGTCATGATTAACTGGACTC 58.452 38.462 0.00 0.00 0.00 3.36
490 1597 5.091261 ACTGTCATGATTAACTGGACTCC 57.909 43.478 0.00 0.00 0.00 3.85
491 1598 4.115516 CTGTCATGATTAACTGGACTCCG 58.884 47.826 0.00 0.00 0.00 4.63
492 1599 3.118775 TGTCATGATTAACTGGACTCCGG 60.119 47.826 0.00 1.90 35.68 5.14
493 1600 2.158957 TCATGATTAACTGGACTCCGGC 60.159 50.000 3.52 0.00 32.02 6.13
494 1601 0.539986 TGATTAACTGGACTCCGGCC 59.460 55.000 3.52 0.00 32.02 6.13
495 1602 0.831307 GATTAACTGGACTCCGGCCT 59.169 55.000 0.00 0.00 32.02 5.19
496 1603 1.209747 GATTAACTGGACTCCGGCCTT 59.790 52.381 0.00 0.00 32.02 4.35
497 1604 0.323629 TTAACTGGACTCCGGCCTTG 59.676 55.000 0.00 0.00 32.02 3.61
498 1605 0.543410 TAACTGGACTCCGGCCTTGA 60.543 55.000 0.00 0.00 32.02 3.02
499 1606 1.201429 AACTGGACTCCGGCCTTGAT 61.201 55.000 0.00 0.00 32.02 2.57
500 1607 1.144936 CTGGACTCCGGCCTTGATC 59.855 63.158 0.00 0.00 0.00 2.92
501 1608 1.306141 TGGACTCCGGCCTTGATCT 60.306 57.895 0.00 0.00 0.00 2.75
502 1609 1.144936 GGACTCCGGCCTTGATCTG 59.855 63.158 0.00 0.00 0.00 2.90
503 1610 1.617947 GGACTCCGGCCTTGATCTGT 61.618 60.000 0.00 0.00 0.00 3.41
504 1611 0.250513 GACTCCGGCCTTGATCTGTT 59.749 55.000 0.00 0.00 0.00 3.16
505 1612 0.036010 ACTCCGGCCTTGATCTGTTG 60.036 55.000 0.00 0.00 0.00 3.33
506 1613 0.250234 CTCCGGCCTTGATCTGTTGA 59.750 55.000 0.00 0.00 0.00 3.18
507 1614 0.911769 TCCGGCCTTGATCTGTTGAT 59.088 50.000 0.00 0.00 35.26 2.57
508 1615 1.134401 TCCGGCCTTGATCTGTTGATC 60.134 52.381 0.00 0.00 46.89 2.92
526 1633 7.774134 TGTTGATCATGCTAAATATGTGCTTT 58.226 30.769 0.00 0.00 0.00 3.51
575 1704 4.192000 GTGAGAGGCACGGTGATG 57.808 61.111 13.29 0.00 37.83 3.07
577 1706 0.530744 GTGAGAGGCACGGTGATGTA 59.469 55.000 13.29 0.00 37.83 2.29
578 1707 0.817654 TGAGAGGCACGGTGATGTAG 59.182 55.000 13.29 0.00 0.00 2.74
579 1708 1.103803 GAGAGGCACGGTGATGTAGA 58.896 55.000 13.29 0.00 0.00 2.59
580 1709 1.476891 GAGAGGCACGGTGATGTAGAA 59.523 52.381 13.29 0.00 0.00 2.10
581 1710 2.101582 GAGAGGCACGGTGATGTAGAAT 59.898 50.000 13.29 0.00 0.00 2.40
601 1751 7.458409 AGAATTGTAGATCATGCAACTGTTT 57.542 32.000 0.00 0.00 36.25 2.83
602 1752 8.565896 AGAATTGTAGATCATGCAACTGTTTA 57.434 30.769 0.00 0.00 36.25 2.01
603 1753 8.454106 AGAATTGTAGATCATGCAACTGTTTAC 58.546 33.333 0.00 0.00 36.25 2.01
608 1758 4.697352 AGATCATGCAACTGTTTACACTCC 59.303 41.667 0.00 0.00 0.00 3.85
615 1765 3.290948 ACTGTTTACACTCCCAGCAAA 57.709 42.857 0.00 0.00 0.00 3.68
652 1803 2.226912 CCTCGATTTTGTGCCCGTTTTA 59.773 45.455 0.00 0.00 0.00 1.52
663 1814 1.201414 GCCCGTTTTACCCTTCACATG 59.799 52.381 0.00 0.00 0.00 3.21
667 1830 2.227865 CGTTTTACCCTTCACATGGTGG 59.772 50.000 0.00 0.00 36.04 4.61
668 1831 1.917872 TTTACCCTTCACATGGTGGC 58.082 50.000 0.00 0.00 36.04 5.01
669 1832 0.774276 TTACCCTTCACATGGTGGCA 59.226 50.000 0.00 0.00 36.04 4.92
670 1833 0.998928 TACCCTTCACATGGTGGCAT 59.001 50.000 0.00 0.00 36.04 4.40
671 1834 0.998928 ACCCTTCACATGGTGGCATA 59.001 50.000 0.00 0.00 33.87 3.14
672 1835 1.570501 ACCCTTCACATGGTGGCATAT 59.429 47.619 0.00 0.00 33.87 1.78
673 1836 2.233271 CCCTTCACATGGTGGCATATC 58.767 52.381 0.00 0.00 33.87 1.63
674 1837 1.875514 CCTTCACATGGTGGCATATCG 59.124 52.381 0.00 0.00 33.87 2.92
675 1838 1.875514 CTTCACATGGTGGCATATCGG 59.124 52.381 0.00 0.00 33.87 4.18
676 1839 0.836606 TCACATGGTGGCATATCGGT 59.163 50.000 0.00 0.00 33.87 4.69
677 1840 1.202639 TCACATGGTGGCATATCGGTC 60.203 52.381 0.00 0.00 33.87 4.79
692 1860 3.360340 GTCCGTCCTCGTCGTGGT 61.360 66.667 12.76 0.00 35.01 4.16
726 1895 1.101049 ACCAAGTTGTCGGCCTTGTG 61.101 55.000 0.00 0.84 37.05 3.33
728 1897 1.453015 AAGTTGTCGGCCTTGTGCA 60.453 52.632 0.00 0.00 43.89 4.57
771 1942 1.758514 GAGGTCCATCCCGCTCTCA 60.759 63.158 0.00 0.00 36.75 3.27
901 2075 2.811873 GCTTTCTTGCCTCCTCACTTCA 60.812 50.000 0.00 0.00 0.00 3.02
981 2157 3.775654 GGCGGAGTGGAGGTGGAG 61.776 72.222 0.00 0.00 0.00 3.86
982 2158 3.775654 GCGGAGTGGAGGTGGAGG 61.776 72.222 0.00 0.00 0.00 4.30
1095 2271 2.348998 CCGCTCAACCTCTGGCTT 59.651 61.111 0.00 0.00 0.00 4.35
1098 2274 1.682257 GCTCAACCTCTGGCTTCCT 59.318 57.895 0.00 0.00 0.00 3.36
1273 2458 0.600255 CTGAGACGCTGGAACCGTTT 60.600 55.000 0.00 0.00 39.30 3.60
1279 2465 1.566018 CGCTGGAACCGTTTGAGACC 61.566 60.000 0.00 0.00 0.00 3.85
1285 2471 1.343465 GAACCGTTTGAGACCTGGAGA 59.657 52.381 0.00 0.00 0.00 3.71
1350 2544 6.206829 AGAGGTAGTGGTTAATTTCAGTTTGC 59.793 38.462 0.00 0.00 0.00 3.68
1363 2571 5.398603 TTCAGTTTGCTCTTTTGGTTTCA 57.601 34.783 0.00 0.00 0.00 2.69
1371 2581 4.405358 TGCTCTTTTGGTTTCATTCTTGGT 59.595 37.500 0.00 0.00 0.00 3.67
1393 2641 3.711190 TCTAGCAATGCCTGGTCTGAATA 59.289 43.478 0.00 0.00 36.95 1.75
1404 2660 4.881850 CCTGGTCTGAATATGGGTTGTAAC 59.118 45.833 0.00 0.00 0.00 2.50
1408 2664 7.867921 TGGTCTGAATATGGGTTGTAACTAAT 58.132 34.615 0.00 0.00 0.00 1.73
1410 2666 7.444487 GGTCTGAATATGGGTTGTAACTAATCC 59.556 40.741 0.00 0.00 0.00 3.01
1411 2667 8.211629 GTCTGAATATGGGTTGTAACTAATCCT 58.788 37.037 0.00 0.00 31.88 3.24
1412 2668 9.442062 TCTGAATATGGGTTGTAACTAATCCTA 57.558 33.333 0.00 0.00 31.88 2.94
1460 2937 3.446516 AGTTTACGGAGGTACAGGTGATC 59.553 47.826 0.00 0.00 0.00 2.92
1482 2959 0.175531 TTCATCCGCGCTTCTCATGA 59.824 50.000 5.56 2.69 0.00 3.07
1529 3006 2.876368 GAATGCTAGCTGCCACCGGT 62.876 60.000 17.23 0.00 42.00 5.28
1532 3009 2.125512 CTAGCTGCCACCGGTGAC 60.126 66.667 36.07 26.02 0.00 3.67
1545 3022 0.246635 CGGTGACTTCCAGATCGGTT 59.753 55.000 3.97 0.00 35.57 4.44
1546 3023 1.475280 CGGTGACTTCCAGATCGGTTA 59.525 52.381 3.97 0.00 35.57 2.85
1547 3024 2.734492 CGGTGACTTCCAGATCGGTTAC 60.734 54.545 3.97 0.00 35.57 2.50
1548 3025 2.527100 GTGACTTCCAGATCGGTTACG 58.473 52.381 3.97 0.00 42.74 3.18
1558 3055 2.587080 TCGGTTACGATGCTTCCCT 58.413 52.632 0.00 0.00 45.59 4.20
1574 3071 4.141869 GCTTCCCTGTGCATTTTTATCCAT 60.142 41.667 0.00 0.00 0.00 3.41
1599 3096 3.769739 TTGGGATATGATGAAGACCGG 57.230 47.619 0.00 0.00 0.00 5.28
1655 3160 3.119245 CCAGTCAAATGCCAGAAGGAATG 60.119 47.826 0.00 0.00 31.55 2.67
1700 3205 4.150897 TCACAACTTAGAACACCAAGCT 57.849 40.909 0.00 0.00 0.00 3.74
1712 3217 4.882671 ACACCAAGCTAGAATTATTGCG 57.117 40.909 0.00 0.00 0.00 4.85
1716 3221 5.295787 CACCAAGCTAGAATTATTGCGGTAA 59.704 40.000 5.95 0.00 0.00 2.85
1724 3229 8.770828 GCTAGAATTATTGCGGTAAAATAGTGA 58.229 33.333 0.00 0.00 0.00 3.41
1735 3240 6.208204 GCGGTAAAATAGTGACTAGGAGGATA 59.792 42.308 0.00 0.00 0.00 2.59
1737 3242 9.458727 CGGTAAAATAGTGACTAGGAGGATATA 57.541 37.037 0.00 0.00 0.00 0.86
1745 3250 4.844655 TGACTAGGAGGATATAAAAGGGCC 59.155 45.833 0.00 0.00 0.00 5.80
1746 3251 4.839589 ACTAGGAGGATATAAAAGGGCCA 58.160 43.478 6.18 0.00 0.00 5.36
1763 3268 7.544804 AAGGGCCATATGGAATTAAGATTTC 57.455 36.000 26.47 2.51 37.39 2.17
1785 3292 6.024563 TCCCATATTTAGCCAAATCAAGGA 57.975 37.500 0.00 0.00 35.88 3.36
1907 3423 5.584649 TCGAATGAATGGAGTATTTCGCTTT 59.415 36.000 0.00 0.00 30.44 3.51
1908 3424 5.904080 CGAATGAATGGAGTATTTCGCTTTC 59.096 40.000 0.00 0.00 0.00 2.62
1923 3439 1.661460 GCTTTCTGTGAAAGCGTCTGC 60.661 52.381 23.27 6.61 42.46 4.26
1977 3493 3.459232 TGCAATATAGACGAGCTTGCT 57.541 42.857 0.00 2.00 42.01 3.91
1991 3507 4.512484 GAGCTTGCTTAGTCTGATTTCCT 58.488 43.478 0.00 0.00 0.00 3.36
2003 3519 1.601903 TGATTTCCTTCGCACACACAC 59.398 47.619 0.00 0.00 0.00 3.82
2004 3520 0.951558 ATTTCCTTCGCACACACACC 59.048 50.000 0.00 0.00 0.00 4.16
2005 3521 0.393132 TTTCCTTCGCACACACACCA 60.393 50.000 0.00 0.00 0.00 4.17
2006 3522 0.393132 TTCCTTCGCACACACACCAA 60.393 50.000 0.00 0.00 0.00 3.67
2007 3523 0.393132 TCCTTCGCACACACACCAAA 60.393 50.000 0.00 0.00 0.00 3.28
2040 3556 1.002201 TGGCGAGTTACGGGAATTCAA 59.998 47.619 7.93 0.00 42.83 2.69
2113 3637 5.192927 AGTGATTAAGGCCGATTTCATTCA 58.807 37.500 0.00 0.00 0.00 2.57
2114 3638 5.066505 AGTGATTAAGGCCGATTTCATTCAC 59.933 40.000 0.00 4.48 0.00 3.18
2115 3639 4.035091 TGATTAAGGCCGATTTCATTCACG 59.965 41.667 0.00 0.00 0.00 4.35
2116 3640 1.094785 AAGGCCGATTTCATTCACGG 58.905 50.000 0.00 0.00 46.74 4.94
2117 3641 0.251916 AGGCCGATTTCATTCACGGA 59.748 50.000 0.00 0.00 46.94 4.69
2118 3642 1.091537 GGCCGATTTCATTCACGGAA 58.908 50.000 0.00 0.00 46.94 4.30
2119 3643 1.470890 GGCCGATTTCATTCACGGAAA 59.529 47.619 0.00 0.00 46.94 3.13
2120 3644 2.094957 GGCCGATTTCATTCACGGAAAA 60.095 45.455 0.00 0.00 46.94 2.29
2121 3645 3.171277 GCCGATTTCATTCACGGAAAAG 58.829 45.455 0.00 0.00 46.94 2.27
2122 3646 3.119990 GCCGATTTCATTCACGGAAAAGA 60.120 43.478 0.00 0.00 46.94 2.52
2123 3647 4.438744 GCCGATTTCATTCACGGAAAAGAT 60.439 41.667 0.00 0.00 46.94 2.40
2124 3648 5.220777 GCCGATTTCATTCACGGAAAAGATA 60.221 40.000 0.00 0.00 46.94 1.98
2125 3649 6.513393 GCCGATTTCATTCACGGAAAAGATAT 60.513 38.462 0.00 0.00 46.94 1.63
2126 3650 7.417612 CCGATTTCATTCACGGAAAAGATATT 58.582 34.615 0.00 0.00 46.94 1.28
2127 3651 8.556194 CCGATTTCATTCACGGAAAAGATATTA 58.444 33.333 0.00 0.00 46.94 0.98
2128 3652 9.929722 CGATTTCATTCACGGAAAAGATATTAA 57.070 29.630 0.00 0.00 37.74 1.40
2131 3655 7.259290 TCATTCACGGAAAAGATATTAAGGC 57.741 36.000 0.00 0.00 0.00 4.35
2132 3656 6.262273 TCATTCACGGAAAAGATATTAAGGCC 59.738 38.462 0.00 0.00 0.00 5.19
2133 3657 4.124238 TCACGGAAAAGATATTAAGGCCG 58.876 43.478 0.00 0.00 42.85 6.13
2134 3658 4.124238 CACGGAAAAGATATTAAGGCCGA 58.876 43.478 0.00 0.00 39.85 5.54
2135 3659 4.755123 CACGGAAAAGATATTAAGGCCGAT 59.245 41.667 0.00 0.00 39.85 4.18
2136 3660 5.238650 CACGGAAAAGATATTAAGGCCGATT 59.761 40.000 0.00 0.00 39.85 3.34
2137 3661 5.826208 ACGGAAAAGATATTAAGGCCGATTT 59.174 36.000 0.00 0.00 39.85 2.17
2138 3662 6.017357 ACGGAAAAGATATTAAGGCCGATTTC 60.017 38.462 0.00 0.00 39.85 2.17
2139 3663 6.017440 CGGAAAAGATATTAAGGCCGATTTCA 60.017 38.462 0.00 0.00 39.85 2.69
2140 3664 7.308589 CGGAAAAGATATTAAGGCCGATTTCAT 60.309 37.037 0.00 0.00 39.85 2.57
2141 3665 8.360390 GGAAAAGATATTAAGGCCGATTTCATT 58.640 33.333 0.00 0.00 0.00 2.57
2142 3666 9.399403 GAAAAGATATTAAGGCCGATTTCATTC 57.601 33.333 0.00 4.23 0.00 2.67
2143 3667 8.463930 AAAGATATTAAGGCCGATTTCATTCA 57.536 30.769 0.00 0.00 0.00 2.57
2151 3677 3.171277 GCCGATTTCATTCACGGAAAAG 58.829 45.455 0.00 0.00 46.94 2.27
2174 3700 9.875691 AAAGATATTAAGGCCAATTTCTTGTTC 57.124 29.630 16.86 0.00 36.74 3.18
2222 3748 4.142609 TGCTCCTCATTGTCTCATTACC 57.857 45.455 0.00 0.00 0.00 2.85
2231 3757 4.729227 TTGTCTCATTACCGATAGTGCA 57.271 40.909 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.408069 CTAATTTTACGAACTAAGACTGTCTGT 57.592 33.333 11.71 6.28 0.00 3.41
29 30 9.868277 CTAGAAAATGAAGACTGTCTGTAGATT 57.132 33.333 11.71 4.75 0.00 2.40
30 31 7.978975 GCTAGAAAATGAAGACTGTCTGTAGAT 59.021 37.037 11.71 0.00 0.00 1.98
31 32 7.039714 TGCTAGAAAATGAAGACTGTCTGTAGA 60.040 37.037 11.71 0.00 0.00 2.59
33 34 6.993079 TGCTAGAAAATGAAGACTGTCTGTA 58.007 36.000 11.71 3.92 0.00 2.74
34 35 5.858381 TGCTAGAAAATGAAGACTGTCTGT 58.142 37.500 11.71 1.70 0.00 3.41
35 36 6.620303 GCTTGCTAGAAAATGAAGACTGTCTG 60.620 42.308 11.71 0.00 0.00 3.51
36 37 5.411053 GCTTGCTAGAAAATGAAGACTGTCT 59.589 40.000 4.06 4.06 0.00 3.41
37 38 5.411053 AGCTTGCTAGAAAATGAAGACTGTC 59.589 40.000 0.00 0.00 0.00 3.51
41 42 5.877564 AGGTAGCTTGCTAGAAAATGAAGAC 59.122 40.000 2.20 0.00 0.00 3.01
42 43 5.877012 CAGGTAGCTTGCTAGAAAATGAAGA 59.123 40.000 2.20 0.00 0.00 2.87
46 47 5.886960 AACAGGTAGCTTGCTAGAAAATG 57.113 39.130 2.20 1.39 0.00 2.32
53 1134 3.326588 TGGAAGAAACAGGTAGCTTGCTA 59.673 43.478 0.00 0.00 31.16 3.49
94 1179 6.210385 TGTTAAGTGAAGAGCAGAGAAGAGAT 59.790 38.462 0.00 0.00 0.00 2.75
123 1208 2.341846 ACTCCGCTTTTTCCTTGTCA 57.658 45.000 0.00 0.00 0.00 3.58
134 1219 3.933861 ATATGGAAAGGAACTCCGCTT 57.066 42.857 0.00 0.00 38.49 4.68
137 1222 7.095607 CGATAAGAAATATGGAAAGGAACTCCG 60.096 40.741 0.00 0.00 38.49 4.63
188 1278 3.648009 CTTCTATTCCTCGCCATCTGTC 58.352 50.000 0.00 0.00 0.00 3.51
189 1279 2.224161 GCTTCTATTCCTCGCCATCTGT 60.224 50.000 0.00 0.00 0.00 3.41
218 1308 2.385013 ACACGTATCTTGCAGCATCA 57.615 45.000 0.00 0.00 0.00 3.07
233 1323 3.251571 GAGCACTAGTCCCTTTTACACG 58.748 50.000 0.00 0.00 0.00 4.49
250 1340 1.654220 GAGCAAACCAAAGCGAGCA 59.346 52.632 0.00 0.00 35.48 4.26
251 1341 1.081175 GGAGCAAACCAAAGCGAGC 60.081 57.895 0.00 0.00 35.48 5.03
307 1400 4.158949 TGCCATGGAGAAAACAGATCAATG 59.841 41.667 18.40 0.00 0.00 2.82
311 1404 2.686915 CCTGCCATGGAGAAAACAGATC 59.313 50.000 18.40 0.00 0.00 2.75
321 1414 2.114616 ACTCTAGTTCCTGCCATGGAG 58.885 52.381 18.40 10.04 37.43 3.86
331 1424 7.394077 AGTCACTAGGAAGTTTACTCTAGTTCC 59.606 40.741 7.98 0.00 42.81 3.62
335 1428 8.024285 CACAAGTCACTAGGAAGTTTACTCTAG 58.976 40.741 0.00 0.00 31.24 2.43
364 1457 0.392595 GGCTGCGCCCCCTATATAAC 60.393 60.000 4.18 0.00 44.06 1.89
381 1474 2.860628 CTGATTACGCTCGCACGGC 61.861 63.158 2.08 0.00 37.37 5.68
388 1481 6.679327 ACCTTATTTTTCCTGATTACGCTC 57.321 37.500 0.00 0.00 0.00 5.03
410 1503 6.473131 CACACATTGTACATGAATGGCATTAC 59.527 38.462 13.65 7.89 35.48 1.89
437 1530 7.664318 TGACCTGATAATAAGTAGATGAGCGTA 59.336 37.037 0.00 0.00 0.00 4.42
466 1573 6.627287 CGGAGTCCAGTTAATCATGACAGTAA 60.627 42.308 10.49 0.00 0.00 2.24
478 1585 0.323629 CAAGGCCGGAGTCCAGTTAA 59.676 55.000 5.05 0.00 0.00 2.01
479 1586 0.543410 TCAAGGCCGGAGTCCAGTTA 60.543 55.000 5.05 0.00 0.00 2.24
480 1587 1.201429 ATCAAGGCCGGAGTCCAGTT 61.201 55.000 5.05 0.00 0.00 3.16
481 1588 1.613630 ATCAAGGCCGGAGTCCAGT 60.614 57.895 5.05 0.00 0.00 4.00
482 1589 1.144936 GATCAAGGCCGGAGTCCAG 59.855 63.158 5.05 0.00 0.00 3.86
483 1590 1.306141 AGATCAAGGCCGGAGTCCA 60.306 57.895 5.05 0.00 0.00 4.02
484 1591 1.144936 CAGATCAAGGCCGGAGTCC 59.855 63.158 5.05 0.00 0.00 3.85
485 1592 0.250513 AACAGATCAAGGCCGGAGTC 59.749 55.000 5.05 0.00 0.00 3.36
486 1593 0.036010 CAACAGATCAAGGCCGGAGT 60.036 55.000 5.05 0.00 0.00 3.85
487 1594 0.250234 TCAACAGATCAAGGCCGGAG 59.750 55.000 5.05 0.00 0.00 4.63
488 1595 0.911769 ATCAACAGATCAAGGCCGGA 59.088 50.000 5.05 0.00 0.00 5.14
489 1596 1.303309 GATCAACAGATCAAGGCCGG 58.697 55.000 0.00 0.00 38.41 6.13
490 1597 2.028420 TGATCAACAGATCAAGGCCG 57.972 50.000 5.74 0.00 43.75 6.13
497 1604 7.749570 GCACATATTTAGCATGATCAACAGATC 59.250 37.037 0.00 0.00 38.89 2.75
498 1605 7.447545 AGCACATATTTAGCATGATCAACAGAT 59.552 33.333 0.00 0.00 0.00 2.90
499 1606 6.769341 AGCACATATTTAGCATGATCAACAGA 59.231 34.615 0.00 0.00 0.00 3.41
500 1607 6.967135 AGCACATATTTAGCATGATCAACAG 58.033 36.000 0.00 0.00 0.00 3.16
501 1608 6.947644 AGCACATATTTAGCATGATCAACA 57.052 33.333 0.00 0.00 0.00 3.33
502 1609 7.168637 CCAAAGCACATATTTAGCATGATCAAC 59.831 37.037 0.00 0.00 0.00 3.18
503 1610 7.204604 CCAAAGCACATATTTAGCATGATCAA 58.795 34.615 0.00 0.00 0.00 2.57
504 1611 6.736519 GCCAAAGCACATATTTAGCATGATCA 60.737 38.462 0.00 0.00 39.53 2.92
505 1612 5.632347 GCCAAAGCACATATTTAGCATGATC 59.368 40.000 0.00 0.00 39.53 2.92
506 1613 5.535333 GCCAAAGCACATATTTAGCATGAT 58.465 37.500 0.00 0.00 39.53 2.45
507 1614 4.497842 CGCCAAAGCACATATTTAGCATGA 60.498 41.667 0.00 0.00 39.83 3.07
508 1615 3.732219 CGCCAAAGCACATATTTAGCATG 59.268 43.478 0.00 0.00 39.83 4.06
509 1616 3.631686 TCGCCAAAGCACATATTTAGCAT 59.368 39.130 0.00 0.00 39.83 3.79
510 1617 3.013219 TCGCCAAAGCACATATTTAGCA 58.987 40.909 0.00 0.00 39.83 3.49
511 1618 3.691049 TCGCCAAAGCACATATTTAGC 57.309 42.857 0.00 0.00 39.83 3.09
556 1685 3.006756 ATCACCGTGCCTCTCACCG 62.007 63.158 0.00 0.00 42.69 4.94
569 1698 6.707608 TGCATGATCTACAATTCTACATCACC 59.292 38.462 0.00 0.00 0.00 4.02
570 1699 7.719778 TGCATGATCTACAATTCTACATCAC 57.280 36.000 0.00 0.00 0.00 3.06
572 1701 8.281194 CAGTTGCATGATCTACAATTCTACATC 58.719 37.037 0.00 0.00 0.00 3.06
573 1702 7.772292 ACAGTTGCATGATCTACAATTCTACAT 59.228 33.333 0.00 0.00 0.00 2.29
574 1703 7.105588 ACAGTTGCATGATCTACAATTCTACA 58.894 34.615 0.00 0.00 0.00 2.74
575 1704 7.545362 ACAGTTGCATGATCTACAATTCTAC 57.455 36.000 0.00 0.00 0.00 2.59
577 1706 7.458409 AAACAGTTGCATGATCTACAATTCT 57.542 32.000 0.00 0.00 0.00 2.40
578 1707 8.236586 TGTAAACAGTTGCATGATCTACAATTC 58.763 33.333 0.00 0.00 0.00 2.17
579 1708 8.023128 GTGTAAACAGTTGCATGATCTACAATT 58.977 33.333 0.00 0.00 31.62 2.32
580 1709 7.391554 AGTGTAAACAGTTGCATGATCTACAAT 59.608 33.333 0.00 0.00 31.62 2.71
581 1710 6.710295 AGTGTAAACAGTTGCATGATCTACAA 59.290 34.615 0.00 0.00 31.62 2.41
634 1784 2.321263 GGTAAAACGGGCACAAAATCG 58.679 47.619 0.00 0.00 0.00 3.34
638 1788 1.682323 GAAGGGTAAAACGGGCACAAA 59.318 47.619 0.00 0.00 0.00 2.83
641 1792 0.594602 GTGAAGGGTAAAACGGGCAC 59.405 55.000 0.00 0.00 0.00 5.01
643 1794 1.201414 CATGTGAAGGGTAAAACGGGC 59.799 52.381 0.00 0.00 0.00 6.13
652 1803 0.998928 TATGCCACCATGTGAAGGGT 59.001 50.000 0.00 0.00 35.23 4.34
663 1814 1.300697 GACGGACCGATATGCCACC 60.301 63.158 23.38 0.00 0.00 4.61
667 1830 1.081376 CGAGGACGGACCGATATGC 60.081 63.158 23.38 3.21 44.74 3.14
668 1831 0.237761 GACGAGGACGGACCGATATG 59.762 60.000 23.38 8.54 44.74 1.78
669 1832 1.226686 CGACGAGGACGGACCGATAT 61.227 60.000 23.38 4.91 44.74 1.63
670 1833 1.884464 CGACGAGGACGGACCGATA 60.884 63.158 23.38 0.00 44.74 2.92
671 1834 3.200593 CGACGAGGACGGACCGAT 61.201 66.667 23.38 5.74 44.74 4.18
672 1835 4.687215 ACGACGAGGACGGACCGA 62.687 66.667 23.38 0.00 44.74 4.69
673 1836 4.456253 CACGACGAGGACGGACCG 62.456 72.222 13.61 13.61 44.74 4.79
674 1837 4.112341 CCACGACGAGGACGGACC 62.112 72.222 5.25 0.00 44.46 4.46
675 1838 3.360340 ACCACGACGAGGACGGAC 61.360 66.667 18.62 0.00 44.46 4.79
676 1839 3.359523 CACCACGACGAGGACGGA 61.360 66.667 18.62 0.00 44.46 4.69
677 1840 1.855213 TAACACCACGACGAGGACGG 61.855 60.000 18.62 9.19 44.46 4.79
692 1860 6.068010 ACAACTTGGTCAGATTTGGATAACA 58.932 36.000 0.00 0.00 0.00 2.41
726 1895 0.317436 TGTTGTCGTTGCGGATTTGC 60.317 50.000 0.00 0.00 0.00 3.68
728 1897 2.098443 ACTTTGTTGTCGTTGCGGATTT 59.902 40.909 0.00 0.00 0.00 2.17
855 2029 2.436539 CGACTGATGGTGTGTCGCG 61.437 63.158 0.00 0.00 45.00 5.87
976 2152 2.105930 CAGCTAGCTCGCCTCCAC 59.894 66.667 16.15 0.00 0.00 4.02
977 2153 3.150335 CCAGCTAGCTCGCCTCCA 61.150 66.667 16.15 0.00 0.00 3.86
978 2154 3.151022 ACCAGCTAGCTCGCCTCC 61.151 66.667 16.15 0.00 0.00 4.30
979 2155 2.105930 CACCAGCTAGCTCGCCTC 59.894 66.667 16.15 0.00 0.00 4.70
980 2156 3.465403 CCACCAGCTAGCTCGCCT 61.465 66.667 16.15 0.00 0.00 5.52
1273 2458 1.075536 TGCTACTGTCTCCAGGTCTCA 59.924 52.381 0.00 0.00 43.36 3.27
1279 2465 4.521130 TTAACACTGCTACTGTCTCCAG 57.479 45.455 0.00 0.00 44.68 3.86
1285 2471 9.502091 TGAGAAAATTATTAACACTGCTACTGT 57.498 29.630 0.00 0.00 0.00 3.55
1319 2513 7.837863 TGAAATTAACCACTACCTCTACTCTG 58.162 38.462 0.00 0.00 0.00 3.35
1350 2544 6.396829 AGACCAAGAATGAAACCAAAAGAG 57.603 37.500 0.00 0.00 0.00 2.85
1363 2571 3.285484 CAGGCATTGCTAGACCAAGAAT 58.715 45.455 8.82 0.00 0.00 2.40
1371 2581 1.571955 TCAGACCAGGCATTGCTAGA 58.428 50.000 8.82 0.00 0.00 2.43
1454 2931 1.766143 GCGCGGATGAACAGATCACC 61.766 60.000 8.83 0.00 41.93 4.02
1460 2937 0.737367 TGAGAAGCGCGGATGAACAG 60.737 55.000 8.83 0.00 0.00 3.16
1470 2947 3.432782 CAAAATTCCTCATGAGAAGCGC 58.567 45.455 24.62 0.00 0.00 5.92
1482 2959 5.943416 TGTATTCATCGTCACCAAAATTCCT 59.057 36.000 0.00 0.00 0.00 3.36
1529 3006 2.439409 TCGTAACCGATCTGGAAGTCA 58.561 47.619 10.05 0.00 42.00 3.41
1545 3022 1.979262 TGCACAGGGAAGCATCGTA 59.021 52.632 0.00 0.00 35.51 3.43
1546 3023 2.749682 TGCACAGGGAAGCATCGT 59.250 55.556 0.00 0.00 35.51 3.73
1558 3055 7.046652 CCCAATTGTATGGATAAAAATGCACA 58.953 34.615 4.43 0.00 43.54 4.57
1574 3071 6.230472 CGGTCTTCATCATATCCCAATTGTA 58.770 40.000 4.43 0.00 0.00 2.41
1599 3096 9.511144 AAAATAGTGTTACCGCTTTTATAATGC 57.489 29.630 0.00 0.00 32.54 3.56
1700 3205 9.826574 AGTCACTATTTTACCGCAATAATTCTA 57.173 29.630 0.00 0.00 0.00 2.10
1724 3229 4.839589 TGGCCCTTTTATATCCTCCTAGT 58.160 43.478 0.00 0.00 0.00 2.57
1735 3240 9.619842 AATCTTAATTCCATATGGCCCTTTTAT 57.380 29.630 17.58 3.30 34.44 1.40
1737 3242 7.936026 AATCTTAATTCCATATGGCCCTTTT 57.064 32.000 17.58 8.02 34.44 2.27
1763 3268 6.729690 TTCCTTGATTTGGCTAAATATGGG 57.270 37.500 8.15 10.13 36.66 4.00
1809 3316 8.786826 ATCAACGAGACTAATTTTGGAATACA 57.213 30.769 0.00 0.00 0.00 2.29
1813 3320 9.496873 TCTAAATCAACGAGACTAATTTTGGAA 57.503 29.630 0.00 0.00 0.00 3.53
1859 3375 9.878599 CGAAAATAAGTGTCACTGATTTAAAGT 57.121 29.630 23.29 11.61 38.11 2.66
1871 3387 7.390440 ACTCCATTCATTCGAAAATAAGTGTCA 59.610 33.333 0.00 0.00 34.01 3.58
1884 3400 5.409643 AAGCGAAATACTCCATTCATTCG 57.590 39.130 0.00 0.00 41.69 3.34
1888 3404 5.122239 CACAGAAAGCGAAATACTCCATTCA 59.878 40.000 0.00 0.00 0.00 2.57
1918 3434 3.512516 GCATTCCCGGCAGCAGAC 61.513 66.667 0.00 0.00 0.00 3.51
1921 3437 4.349503 AGTGCATTCCCGGCAGCA 62.350 61.111 0.00 0.00 42.85 4.41
1923 3439 1.243342 TTTGAGTGCATTCCCGGCAG 61.243 55.000 6.77 0.00 42.85 4.85
1927 3443 1.879380 TCAACTTTGAGTGCATTCCCG 59.121 47.619 6.77 0.00 32.50 5.14
1932 3448 3.484407 AGAGCTTCAACTTTGAGTGCAT 58.516 40.909 16.20 6.46 39.35 3.96
1977 3493 3.994392 GTGTGCGAAGGAAATCAGACTAA 59.006 43.478 0.00 0.00 0.00 2.24
2015 3531 2.173669 CCCGTAACTCGCCATGCTG 61.174 63.158 0.00 0.00 38.35 4.41
2022 3538 1.395954 GGTTGAATTCCCGTAACTCGC 59.604 52.381 2.27 0.00 38.35 5.03
2040 3556 0.474184 CCATAGGAAGGCAATCGGGT 59.526 55.000 0.00 0.00 0.00 5.28
2060 3576 3.372206 GCACTTGCCACAATACTACAGAG 59.628 47.826 0.00 0.00 34.31 3.35
2113 3637 4.411256 TCGGCCTTAATATCTTTTCCGT 57.589 40.909 0.00 0.00 37.18 4.69
2114 3638 5.941948 AATCGGCCTTAATATCTTTTCCG 57.058 39.130 0.00 0.00 37.21 4.30
2115 3639 7.272037 TGAAATCGGCCTTAATATCTTTTCC 57.728 36.000 0.00 0.00 0.00 3.13
2116 3640 9.399403 GAATGAAATCGGCCTTAATATCTTTTC 57.601 33.333 0.00 0.00 0.00 2.29
2117 3641 8.912988 TGAATGAAATCGGCCTTAATATCTTTT 58.087 29.630 0.00 0.00 0.00 2.27
2118 3642 8.352942 GTGAATGAAATCGGCCTTAATATCTTT 58.647 33.333 0.00 0.00 0.00 2.52
2119 3643 7.307989 CGTGAATGAAATCGGCCTTAATATCTT 60.308 37.037 0.00 0.00 0.00 2.40
2120 3644 6.147821 CGTGAATGAAATCGGCCTTAATATCT 59.852 38.462 0.00 0.00 0.00 1.98
2121 3645 6.307155 CGTGAATGAAATCGGCCTTAATATC 58.693 40.000 0.00 0.00 0.00 1.63
2122 3646 5.181245 CCGTGAATGAAATCGGCCTTAATAT 59.819 40.000 0.00 0.00 36.68 1.28
2123 3647 4.513692 CCGTGAATGAAATCGGCCTTAATA 59.486 41.667 0.00 0.00 36.68 0.98
2124 3648 3.315191 CCGTGAATGAAATCGGCCTTAAT 59.685 43.478 0.00 0.00 36.68 1.40
2125 3649 2.680841 CCGTGAATGAAATCGGCCTTAA 59.319 45.455 0.00 0.00 36.68 1.85
2126 3650 2.093394 TCCGTGAATGAAATCGGCCTTA 60.093 45.455 0.00 0.00 42.28 2.69
2127 3651 1.094785 CCGTGAATGAAATCGGCCTT 58.905 50.000 0.00 0.00 36.68 4.35
2128 3652 0.251916 TCCGTGAATGAAATCGGCCT 59.748 50.000 0.00 0.00 42.28 5.19
2129 3653 1.091537 TTCCGTGAATGAAATCGGCC 58.908 50.000 0.00 0.00 42.28 6.13
2130 3654 2.911819 TTTCCGTGAATGAAATCGGC 57.088 45.000 0.00 0.00 42.28 5.54
2131 3655 4.678509 TCTTTTCCGTGAATGAAATCGG 57.321 40.909 0.00 0.00 43.65 4.18
2132 3656 9.929722 TTAATATCTTTTCCGTGAATGAAATCG 57.070 29.630 0.00 0.00 32.19 3.34
2135 3659 8.188139 GCCTTAATATCTTTTCCGTGAATGAAA 58.812 33.333 0.00 0.00 0.00 2.69
2136 3660 7.201785 GGCCTTAATATCTTTTCCGTGAATGAA 60.202 37.037 0.00 0.00 0.00 2.57
2137 3661 6.262273 GGCCTTAATATCTTTTCCGTGAATGA 59.738 38.462 0.00 0.00 0.00 2.57
2138 3662 6.039270 TGGCCTTAATATCTTTTCCGTGAATG 59.961 38.462 3.32 0.00 0.00 2.67
2139 3663 6.126409 TGGCCTTAATATCTTTTCCGTGAAT 58.874 36.000 3.32 0.00 0.00 2.57
2140 3664 5.502079 TGGCCTTAATATCTTTTCCGTGAA 58.498 37.500 3.32 0.00 0.00 3.18
2141 3665 5.105567 TGGCCTTAATATCTTTTCCGTGA 57.894 39.130 3.32 0.00 0.00 4.35
2142 3666 5.828299 TTGGCCTTAATATCTTTTCCGTG 57.172 39.130 3.32 0.00 0.00 4.94
2143 3667 7.342026 AGAAATTGGCCTTAATATCTTTTCCGT 59.658 33.333 3.32 0.00 0.00 4.69
2151 3677 6.417930 GCGAACAAGAAATTGGCCTTAATATC 59.582 38.462 3.32 0.00 0.00 1.63
2231 3757 7.446319 TCCAGATAATGAAAGCATTCGATCAAT 59.554 33.333 11.31 0.00 43.43 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.