Multiple sequence alignment - TraesCS2B01G540500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G540500 chr2B 100.000 2267 0 0 1 2267 737049234 737051500 0.000000e+00 4187.0
1 TraesCS2B01G540500 chr2B 85.542 332 42 4 964 1290 737449854 737450184 2.160000e-90 342.0
2 TraesCS2B01G540500 chr2B 91.228 57 4 1 1412 1467 737453248 737453304 2.410000e-10 76.8
3 TraesCS2B01G540500 chr2B 85.965 57 4 4 815 870 737449636 737449689 8.750000e-05 58.4
4 TraesCS2B01G540500 chr2D 91.160 1810 112 16 502 2267 606132256 606134061 0.000000e+00 2412.0
5 TraesCS2B01G540500 chr2D 80.337 356 39 13 1 326 606131114 606131468 8.090000e-60 241.0
6 TraesCS2B01G540500 chr2D 88.034 117 11 2 391 504 606131975 606132091 3.930000e-28 135.0
7 TraesCS2B01G540500 chr2A 88.714 700 51 11 1581 2266 737833447 737834132 0.000000e+00 830.0
8 TraesCS2B01G540500 chr2A 85.384 821 72 16 808 1590 737644771 737645581 0.000000e+00 808.0
9 TraesCS2B01G540500 chr2A 83.133 830 52 35 808 1590 737829486 737830274 0.000000e+00 676.0
10 TraesCS2B01G540500 chr2A 87.227 321 34 5 391 704 737826865 737827185 2.140000e-95 359.0
11 TraesCS2B01G540500 chr2A 92.672 232 15 1 2036 2267 737731255 737731484 1.300000e-87 333.0
12 TraesCS2B01G540500 chr2A 87.372 293 22 9 395 676 737643852 737644140 2.810000e-84 322.0
13 TraesCS2B01G540500 chr2A 91.736 121 9 1 1581 1700 737730697 737730817 1.390000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G540500 chr2B 737049234 737051500 2266 False 4187.000000 4187 100.000000 1 2267 1 chr2B.!!$F1 2266
1 TraesCS2B01G540500 chr2D 606131114 606134061 2947 False 929.333333 2412 86.510333 1 2267 3 chr2D.!!$F1 2266
2 TraesCS2B01G540500 chr2A 737826865 737834132 7267 False 621.666667 830 86.358000 391 2266 3 chr2A.!!$F3 1875
3 TraesCS2B01G540500 chr2A 737643852 737645581 1729 False 565.000000 808 86.378000 395 1590 2 chr2A.!!$F1 1195
4 TraesCS2B01G540500 chr2A 737730697 737731484 787 False 250.000000 333 92.204000 1581 2267 2 chr2A.!!$F2 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
777 4096 0.107508 AGCCCCTCGTCACATTCATG 60.108 55.0 0.0 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1811 8413 2.16503 GAGGGGTGCATTTGATTGACTG 59.835 50.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.175760 TTCGAAGCAGAATCCCCGAG 59.824 55.000 0.00 0.00 0.00 4.63
86 92 3.419264 TCAGCAACACAACATGAACAC 57.581 42.857 0.00 0.00 0.00 3.32
91 97 3.677121 GCAACACAACATGAACACACAAA 59.323 39.130 0.00 0.00 0.00 2.83
96 102 6.829703 ACACAACATGAACACACAAAATTTG 58.170 32.000 3.89 3.89 0.00 2.32
101 107 5.458452 ACATGAACACACAAAATTTGTAGCG 59.542 36.000 11.33 5.55 43.23 4.26
112 118 6.433093 ACAAAATTTGTAGCGGACCTTAAGAT 59.567 34.615 9.92 0.00 43.27 2.40
131 137 8.628630 TTAAGATTCATCACAACATGTTGGTA 57.371 30.769 35.20 25.01 44.45 3.25
153 159 7.223582 TGGTATGTGTTTGCAACAACATAAAAG 59.776 33.333 24.56 0.00 44.16 2.27
159 166 4.662468 TGCAACAACATAAAAGCAAGGA 57.338 36.364 0.00 0.00 0.00 3.36
161 168 4.142071 TGCAACAACATAAAAGCAAGGACA 60.142 37.500 0.00 0.00 0.00 4.02
180 188 1.193203 CATAGCATGTCGAACGGATGC 59.807 52.381 17.56 17.56 42.37 3.91
181 189 0.529773 TAGCATGTCGAACGGATGCC 60.530 55.000 19.87 9.22 42.93 4.40
192 200 2.966324 CGGATGCCGTAACATCGAA 58.034 52.632 0.00 0.00 46.11 3.71
203 211 4.632688 CCGTAACATCGAATAACCCAAAGT 59.367 41.667 0.00 0.00 0.00 2.66
224 232 2.341846 AACCTTTGTCCGAGAAAGCA 57.658 45.000 11.65 0.00 0.00 3.91
227 235 2.357952 ACCTTTGTCCGAGAAAGCAAAC 59.642 45.455 11.65 0.00 0.00 2.93
230 238 2.341846 TGTCCGAGAAAGCAAACCTT 57.658 45.000 0.00 0.00 34.51 3.50
231 239 1.946768 TGTCCGAGAAAGCAAACCTTG 59.053 47.619 0.00 0.00 33.01 3.61
236 244 2.095718 CGAGAAAGCAAACCTTGTAGCC 60.096 50.000 0.00 0.00 33.01 3.93
247 255 1.135257 CCTTGTAGCCAGAGACTCGTG 60.135 57.143 0.00 0.00 0.00 4.35
252 260 3.201494 CCAGAGACTCGTGGCGAT 58.799 61.111 7.69 0.00 34.61 4.58
255 263 0.383590 CAGAGACTCGTGGCGATGAT 59.616 55.000 0.00 0.00 34.61 2.45
256 264 0.665835 AGAGACTCGTGGCGATGATC 59.334 55.000 0.00 0.00 34.61 2.92
257 265 0.665835 GAGACTCGTGGCGATGATCT 59.334 55.000 0.00 0.00 34.61 2.75
258 266 0.383590 AGACTCGTGGCGATGATCTG 59.616 55.000 0.00 0.00 34.61 2.90
260 268 1.953138 CTCGTGGCGATGATCTGGC 60.953 63.158 0.00 4.45 34.61 4.85
274 305 1.857965 TCTGGCAGATCTAGTGTGCT 58.142 50.000 14.43 0.00 45.83 4.40
284 315 5.873712 CAGATCTAGTGTGCTCAAACTCATT 59.126 40.000 0.00 0.00 0.00 2.57
285 316 7.038048 CAGATCTAGTGTGCTCAAACTCATTA 58.962 38.462 0.00 0.00 0.00 1.90
289 320 2.162408 GTGTGCTCAAACTCATTAGCCC 59.838 50.000 0.00 0.00 33.99 5.19
342 781 2.360475 GCTGCTCCAACCTGACCC 60.360 66.667 0.00 0.00 0.00 4.46
346 785 2.757077 CTCCAACCTGACCCCCAC 59.243 66.667 0.00 0.00 0.00 4.61
347 786 2.856988 TCCAACCTGACCCCCACC 60.857 66.667 0.00 0.00 0.00 4.61
348 787 3.182263 CCAACCTGACCCCCACCA 61.182 66.667 0.00 0.00 0.00 4.17
349 788 2.436109 CAACCTGACCCCCACCAG 59.564 66.667 0.00 0.00 0.00 4.00
368 807 2.792947 GGATGGCCATGGCTGCAAG 61.793 63.158 34.70 0.00 41.60 4.01
391 830 0.903236 AGGAGGTAGGGAAAACTCGC 59.097 55.000 0.00 0.00 0.00 5.03
392 831 0.107800 GGAGGTAGGGAAAACTCGCC 60.108 60.000 0.00 0.00 0.00 5.54
415 903 1.736681 GAGGAGAAGTGCTGCATCAAC 59.263 52.381 5.27 0.00 37.43 3.18
422 910 4.214971 AGAAGTGCTGCATCAACTAAACAG 59.785 41.667 5.27 0.00 0.00 3.16
556 1216 9.288576 TGTTTGATTATATCTCATCATTGGTCC 57.711 33.333 0.00 0.00 29.45 4.46
597 1257 7.497595 ACTATGGGTTTTGTCTTTTCCTTTTC 58.502 34.615 0.00 0.00 0.00 2.29
602 1267 6.403049 GGTTTTGTCTTTTCCTTTTCTGGAA 58.597 36.000 0.00 0.00 43.63 3.53
674 1755 1.577468 CAGTACGTGTTCCAGCACAA 58.423 50.000 0.00 0.00 39.19 3.33
708 1789 1.278637 GCCCGCCGTGAAATAATCG 59.721 57.895 0.00 0.00 0.00 3.34
730 3983 3.063588 GCCTGAAAGTAGTAATTGCGTCC 59.936 47.826 0.00 0.00 0.00 4.79
777 4096 0.107508 AGCCCCTCGTCACATTCATG 60.108 55.000 0.00 0.00 0.00 3.07
800 4123 2.669133 CCAGACCCGGCCAAGATGA 61.669 63.158 2.24 0.00 0.00 2.92
805 4128 1.227263 CCCGGCCAAGATGAGTACG 60.227 63.158 2.24 0.00 0.00 3.67
810 4142 2.794981 CGGCCAAGATGAGTACGTACTG 60.795 54.545 31.91 16.85 36.50 2.74
955 4296 0.662619 CTGCCACTTGCGAAAGAACA 59.337 50.000 11.02 3.81 45.60 3.18
1059 4427 4.393155 TTCGCGCAGGTGCTCCAT 62.393 61.111 8.75 0.00 39.32 3.41
1276 4671 2.229302 GTCTTCTACTGACCGAGTTGCT 59.771 50.000 0.00 0.00 35.96 3.91
1380 4798 7.972832 TTCTTGTTCACTTGTATTTACCGAT 57.027 32.000 0.00 0.00 0.00 4.18
1384 4802 8.780846 TTGTTCACTTGTATTTACCGATATGT 57.219 30.769 0.00 0.00 0.00 2.29
1385 4803 8.780846 TGTTCACTTGTATTTACCGATATGTT 57.219 30.769 0.00 0.00 0.00 2.71
1420 4838 9.577110 AAATAATCTGCATTTGTAACACTGATG 57.423 29.630 0.00 0.00 0.00 3.07
1451 4869 6.788598 AGAGATGAATTCTGCTAGAACTGA 57.211 37.500 7.05 0.00 37.00 3.41
1457 4875 4.744795 ATTCTGCTAGAACTGACGGATT 57.255 40.909 0.00 0.00 37.00 3.01
1467 4885 4.039245 AGAACTGACGGATTCTCTGTTTCA 59.961 41.667 0.00 0.00 35.83 2.69
1496 4914 4.108886 GCGATCAGCGATTTCTTCTTAC 57.891 45.455 0.00 0.00 44.57 2.34
1548 4966 8.612619 AGATTAATTCGCGAAATAGTTGTTGAT 58.387 29.630 27.23 14.97 0.00 2.57
1554 4972 5.123186 TCGCGAAATAGTTGTTGATTTGGAT 59.877 36.000 6.20 0.00 0.00 3.41
1584 5002 1.654105 CGACAATCGACACTGGCTTAC 59.346 52.381 0.00 0.00 43.74 2.34
1633 8233 8.733458 TCAATTTAACTCCATTCATGAGTTCAG 58.267 33.333 8.77 0.00 39.53 3.02
1712 8313 8.867112 TCATCATTAACTAACTGATAACCGAC 57.133 34.615 0.00 0.00 0.00 4.79
1786 8388 3.641436 AGTATGAACTATGATCGTGGCCA 59.359 43.478 0.00 0.00 32.84 5.36
1811 8413 5.571784 TCTGCATTTCATTCTGGTCAATC 57.428 39.130 0.00 0.00 0.00 2.67
1914 8518 2.553602 TCGTAAACGCAACAGTCCTAGA 59.446 45.455 0.00 0.00 39.60 2.43
1928 8532 5.305644 ACAGTCCTAGATCTGACTTTTGTGT 59.694 40.000 11.94 6.22 39.76 3.72
1971 8575 7.663043 AGATCCTAACCGTATTTTCTTCTCT 57.337 36.000 0.00 0.00 0.00 3.10
1974 8578 7.001099 TCCTAACCGTATTTTCTTCTCTTGT 57.999 36.000 0.00 0.00 0.00 3.16
1981 8585 7.444183 ACCGTATTTTCTTCTCTTGTGATTTGA 59.556 33.333 0.00 0.00 0.00 2.69
2005 8609 6.698380 ACGAAGTTAATGTGGAGTTGTATCT 58.302 36.000 0.00 0.00 37.78 1.98
2090 8833 5.614324 CAGTTGGTGGGACTGAATAGATA 57.386 43.478 0.00 0.00 45.72 1.98
2199 8949 7.544217 ACCAAAACTGCTAACTGTTTGTTTAAG 59.456 33.333 0.00 4.38 44.33 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.175760 CTCGGGGATTCTGCTTCGAA 59.824 55.000 0.00 0.00 0.00 3.71
9 10 1.482593 TCTTCTCGGGGATTCTGCTTC 59.517 52.381 0.00 0.00 0.00 3.86
10 11 1.573108 TCTTCTCGGGGATTCTGCTT 58.427 50.000 0.00 0.00 0.00 3.91
15 16 4.061596 GTGATGATTCTTCTCGGGGATTC 58.938 47.826 1.76 0.00 0.00 2.52
49 55 4.916983 GCTGAATGCATGGGTTTACATA 57.083 40.909 0.00 0.00 42.31 2.29
63 69 4.207635 GTGTTCATGTTGTGTTGCTGAATG 59.792 41.667 0.00 0.00 0.00 2.67
64 70 4.142204 TGTGTTCATGTTGTGTTGCTGAAT 60.142 37.500 0.00 0.00 0.00 2.57
86 92 3.915437 AGGTCCGCTACAAATTTTGTG 57.085 42.857 22.04 13.78 45.03 3.33
91 97 6.177610 TGAATCTTAAGGTCCGCTACAAATT 58.822 36.000 1.85 0.00 0.00 1.82
96 102 4.745620 GTGATGAATCTTAAGGTCCGCTAC 59.254 45.833 1.85 0.00 0.00 3.58
101 107 6.375455 ACATGTTGTGATGAATCTTAAGGTCC 59.625 38.462 1.85 0.00 0.00 4.46
112 118 5.534278 ACACATACCAACATGTTGTGATGAA 59.466 36.000 34.33 18.61 39.98 2.57
161 168 1.502231 GCATCCGTTCGACATGCTAT 58.498 50.000 16.19 0.00 39.92 2.97
175 182 3.185797 GGTTATTCGATGTTACGGCATCC 59.814 47.826 10.01 0.00 41.49 3.51
176 183 3.185797 GGGTTATTCGATGTTACGGCATC 59.814 47.826 6.77 6.77 41.21 3.91
180 188 4.632688 ACTTTGGGTTATTCGATGTTACGG 59.367 41.667 0.00 0.00 0.00 4.02
181 189 5.789710 ACTTTGGGTTATTCGATGTTACG 57.210 39.130 0.00 0.00 0.00 3.18
203 211 3.811083 TGCTTTCTCGGACAAAGGTTAA 58.189 40.909 7.68 0.00 32.35 2.01
216 224 2.884639 TGGCTACAAGGTTTGCTTTCTC 59.115 45.455 0.00 0.00 0.00 2.87
217 225 2.887152 CTGGCTACAAGGTTTGCTTTCT 59.113 45.455 0.00 0.00 0.00 2.52
221 229 1.699634 TCTCTGGCTACAAGGTTTGCT 59.300 47.619 0.00 0.00 0.00 3.91
224 232 2.028930 CGAGTCTCTGGCTACAAGGTTT 60.029 50.000 0.00 0.00 0.00 3.27
227 235 1.135257 CACGAGTCTCTGGCTACAAGG 60.135 57.143 0.00 0.00 0.00 3.61
230 238 2.568003 CCACGAGTCTCTGGCTACA 58.432 57.895 0.00 0.00 0.00 2.74
236 244 0.383590 ATCATCGCCACGAGTCTCTG 59.616 55.000 0.00 0.00 39.91 3.35
255 263 1.753649 GAGCACACTAGATCTGCCAGA 59.246 52.381 5.18 0.00 0.00 3.86
256 264 1.479730 TGAGCACACTAGATCTGCCAG 59.520 52.381 5.18 0.00 0.00 4.85
257 265 1.560505 TGAGCACACTAGATCTGCCA 58.439 50.000 5.18 0.00 0.00 4.92
258 266 2.675348 GTTTGAGCACACTAGATCTGCC 59.325 50.000 5.18 0.00 0.00 4.85
260 268 4.814147 TGAGTTTGAGCACACTAGATCTG 58.186 43.478 5.18 0.00 0.00 2.90
267 298 3.077359 GGCTAATGAGTTTGAGCACACT 58.923 45.455 0.00 0.00 36.63 3.55
274 305 2.912956 AGGTCAGGGCTAATGAGTTTGA 59.087 45.455 0.00 0.00 0.00 2.69
284 315 2.040606 GGTGGGAGGTCAGGGCTA 59.959 66.667 0.00 0.00 0.00 3.93
285 316 3.586225 ATGGTGGGAGGTCAGGGCT 62.586 63.158 0.00 0.00 0.00 5.19
289 320 2.378634 GGGGATGGTGGGAGGTCAG 61.379 68.421 0.00 0.00 0.00 3.51
321 352 1.004560 TCAGGTTGGAGCAGCTTCG 60.005 57.895 0.00 0.00 0.00 3.79
326 357 2.352805 GGGGTCAGGTTGGAGCAG 59.647 66.667 0.00 0.00 37.03 4.24
327 358 3.256960 GGGGGTCAGGTTGGAGCA 61.257 66.667 0.00 0.00 37.03 4.26
347 786 2.520982 CAGCCATGGCCATCCCTG 60.521 66.667 33.14 20.11 43.17 4.45
348 787 4.534824 GCAGCCATGGCCATCCCT 62.535 66.667 33.14 12.19 43.17 4.20
349 788 4.845447 TGCAGCCATGGCCATCCC 62.845 66.667 33.14 16.61 43.17 3.85
350 789 2.760799 TTGCAGCCATGGCCATCC 60.761 61.111 33.14 18.37 43.17 3.51
351 790 2.812499 CTTGCAGCCATGGCCATC 59.188 61.111 33.14 21.43 43.17 3.51
352 791 3.467226 GCTTGCAGCCATGGCCAT 61.467 61.111 33.14 14.09 43.17 4.40
362 801 1.222936 CTACCTCCTGGGCTTGCAG 59.777 63.158 0.00 0.00 39.10 4.41
368 807 0.034380 GTTTTCCCTACCTCCTGGGC 60.034 60.000 0.00 0.00 43.04 5.36
370 809 1.207329 CGAGTTTTCCCTACCTCCTGG 59.793 57.143 0.00 0.00 39.83 4.45
372 811 0.903236 GCGAGTTTTCCCTACCTCCT 59.097 55.000 0.00 0.00 0.00 3.69
391 830 2.507992 CAGCACTTCTCCTCGCGG 60.508 66.667 6.13 0.00 0.00 6.46
392 831 3.184683 GCAGCACTTCTCCTCGCG 61.185 66.667 0.00 0.00 0.00 5.87
415 903 6.319152 TCCTCTCGTATTTCTCCTCTGTTTAG 59.681 42.308 0.00 0.00 0.00 1.85
422 910 7.942990 TCTTTATTCCTCTCGTATTTCTCCTC 58.057 38.462 0.00 0.00 0.00 3.71
568 1228 8.721133 AGGAAAAGACAAAACCCATAGTATTT 57.279 30.769 0.00 0.00 0.00 1.40
574 1234 7.418483 CCAGAAAAGGAAAAGACAAAACCCATA 60.418 37.037 0.00 0.00 0.00 2.74
602 1267 3.639561 ACTTGGCAAATCCTACGGTTTTT 59.360 39.130 0.00 0.00 35.26 1.94
619 1285 3.297620 GCCCACACTGCCACTTGG 61.298 66.667 0.00 0.00 38.53 3.61
655 1321 1.260561 GTTGTGCTGGAACACGTACTG 59.739 52.381 0.00 0.00 43.74 2.74
674 1755 1.315257 GGGCCATCGAATTGCAGTGT 61.315 55.000 4.39 0.00 0.00 3.55
708 1789 3.063588 GGACGCAATTACTACTTTCAGGC 59.936 47.826 0.00 0.00 0.00 4.85
746 3999 4.131088 GGGGCTCGGTCAGTCGAC 62.131 72.222 7.70 7.70 41.80 4.20
800 4123 2.096713 GTCGTCGTTGTCAGTACGTACT 60.097 50.000 22.45 22.45 39.84 2.73
805 4128 1.312752 GTCGTCGTCGTTGTCAGTAC 58.687 55.000 1.33 0.00 38.33 2.73
810 4142 1.869503 TTATCGTCGTCGTCGTTGTC 58.130 50.000 11.41 0.00 38.33 3.18
955 4296 1.069765 CACAGCTCCACTCCACGTT 59.930 57.895 0.00 0.00 0.00 3.99
999 4367 2.943265 AGCAGGTGGAGCCCCATT 60.943 61.111 0.00 0.00 45.68 3.16
1084 4455 2.360350 CGGCAGCCAGGTGTTGAT 60.360 61.111 13.30 0.00 0.00 2.57
1344 4762 6.560253 AGTGAACAAGAAACCACACATATC 57.440 37.500 0.00 0.00 32.35 1.63
1345 4763 6.321181 ACAAGTGAACAAGAAACCACACATAT 59.679 34.615 0.00 0.00 32.35 1.78
1346 4764 5.650266 ACAAGTGAACAAGAAACCACACATA 59.350 36.000 0.00 0.00 32.35 2.29
1347 4765 4.462483 ACAAGTGAACAAGAAACCACACAT 59.538 37.500 0.00 0.00 32.35 3.21
1348 4766 3.823873 ACAAGTGAACAAGAAACCACACA 59.176 39.130 0.00 0.00 32.35 3.72
1349 4767 4.434713 ACAAGTGAACAAGAAACCACAC 57.565 40.909 0.00 0.00 32.35 3.82
1350 4768 6.767524 AATACAAGTGAACAAGAAACCACA 57.232 33.333 0.00 0.00 32.35 4.17
1351 4769 7.646526 GGTAAATACAAGTGAACAAGAAACCAC 59.353 37.037 0.00 0.00 0.00 4.16
1420 4838 9.155975 TCTAGCAGAATTCATCTCTTTTTACAC 57.844 33.333 8.44 0.00 35.73 2.90
1451 4869 3.866651 CATCCTGAAACAGAGAATCCGT 58.133 45.455 0.00 0.00 33.66 4.69
1457 4875 1.673923 CGCAGCATCCTGAAACAGAGA 60.674 52.381 0.00 0.00 41.77 3.10
1545 4963 3.438781 GTCGGTGTTGCTAATCCAAATCA 59.561 43.478 0.00 0.00 0.00 2.57
1548 4966 2.852449 TGTCGGTGTTGCTAATCCAAA 58.148 42.857 0.00 0.00 0.00 3.28
1554 4972 2.063266 GTCGATTGTCGGTGTTGCTAA 58.937 47.619 0.00 0.00 40.88 3.09
1712 8313 3.897819 GCTTTATGCCCTTCGTTCG 57.102 52.632 0.00 0.00 35.15 3.95
1786 8388 4.338012 TGACCAGAATGAAATGCAGATGT 58.662 39.130 0.00 0.00 39.69 3.06
1811 8413 2.165030 GAGGGGTGCATTTGATTGACTG 59.835 50.000 0.00 0.00 0.00 3.51
1971 8575 6.261158 TCCACATTAACTTCGTCAAATCACAA 59.739 34.615 0.00 0.00 0.00 3.33
1974 8578 5.995282 ACTCCACATTAACTTCGTCAAATCA 59.005 36.000 0.00 0.00 0.00 2.57
1981 8585 6.590292 CAGATACAACTCCACATTAACTTCGT 59.410 38.462 0.00 0.00 0.00 3.85
2090 8833 7.673926 TCCTAGAAAAGCCAAACCAGAATAAAT 59.326 33.333 0.00 0.00 0.00 1.40
2199 8949 6.071952 TCCATTGCTGAAGAAAGGATAACAAC 60.072 38.462 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.