AutoCloner

Multiple sequence alignment - TraesCS2B01G539700

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BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G539700	chr2B	100.000	4466	0	0	1	4466	734853651	734858116	0.000000e+00	8248.0
1	TraesCS2B01G539700	chr2B	98.427	445	7	0	1	445	734846822	734847266	0.000000e+00	784.0
2	TraesCS2B01G539700	chr2B	98.210	447	8	0	1	447	47979184	47978738	0.000000e+00	782.0
3	TraesCS2B01G539700	chr2B	86.179	369	27	10	1815	2171	416250148	416249792	1.170000e-100	377.0
4	TraesCS2B01G539700	chr2B	94.186	86	4	1	1725	1810	33677837	33677921	3.630000e-26	130.0
5	TraesCS2B01G539700	chr2B	93.103	58	2	1	4113	4168	751534555	751534498	2.860000e-12	84.2
6	TraesCS2B01G539700	chr7A	90.636	2264	96	42	1696	3937	665379397	665377228	0.000000e+00	2900.0
7	TraesCS2B01G539700	chr7A	91.194	511	37	7	3070	3572	498259225	498258715	0.000000e+00	688.0
8	TraesCS2B01G539700	chr7A	90.802	511	39	7	3070	3572	84571814	84571304	0.000000e+00	676.0
9	TraesCS2B01G539700	chr7A	86.493	422	24	12	898	1289	665379815	665379397	2.470000e-117	433.0
10	TraesCS2B01G539700	chr7A	85.388	438	29	14	1288	1697	147056412	147055982	5.340000e-114	422.0
11	TraesCS2B01G539700	chr7B	93.896	1540	34	17	1696	3206	636627324	636625816	0.000000e+00	2268.0
12	TraesCS2B01G539700	chr7B	95.495	444	18	2	446	887	63057391	63057834	0.000000e+00	708.0
13	TraesCS2B01G539700	chr7B	94.595	444	22	2	446	887	63094421	63094864	0.000000e+00	686.0
14	TraesCS2B01G539700	chr7B	94.131	443	21	5	446	886	616830109	616829670	0.000000e+00	669.0
15	TraesCS2B01G539700	chr7B	93.333	450	28	2	446	893	684151660	684151211	0.000000e+00	664.0
16	TraesCS2B01G539700	chr7B	89.806	412	7	5	898	1289	636627720	636627324	3.100000e-136	496.0
17	TraesCS2B01G539700	chr7B	88.424	311	22	4	1872	2171	106512275	106512582	3.280000e-96	363.0
18	TraesCS2B01G539700	chr7B	95.067	223	10	1	3674	3896	636623312	636623091	2.560000e-92	350.0
19	TraesCS2B01G539700	chr7B	83.375	403	40	17	1293	1681	108562421	108562032	9.190000e-92	348.0
20	TraesCS2B01G539700	chr7B	98.824	85	1	0	3561	3645	636623393	636623309	7.740000e-33	152.0
21	TraesCS2B01G539700	chr7B	92.391	92	7	0	1469	1560	108561820	108561729	1.010000e-26	132.0
22	TraesCS2B01G539700	chr7B	84.906	106	11	5	2938	3039	431284161	431284265	7.900000e-18	102.0
23	TraesCS2B01G539700	chr5A	82.910	1141	104	49	2911	4026	617236662	617235588	0.000000e+00	942.0
24	TraesCS2B01G539700	chr5A	91.585	511	35	7	3070	3572	503374752	503375262	0.000000e+00	699.0
25	TraesCS2B01G539700	chr5A	91.585	511	34	8	3070	3572	682620843	682620334	0.000000e+00	697.0
26	TraesCS2B01G539700	chr5A	91.373	510	37	6	3070	3572	631551834	631552343	0.000000e+00	691.0
27	TraesCS2B01G539700	chr5A	91.194	511	37	7	3070	3572	104959473	104959983	0.000000e+00	688.0
28	TraesCS2B01G539700	chr5A	90.411	511	41	7	3070	3572	420434153	420433643	0.000000e+00	665.0
29	TraesCS2B01G539700	chr5A	87.576	491	33	9	1696	2171	617237164	617236687	1.090000e-150	544.0
30	TraesCS2B01G539700	chr5A	84.439	437	45	12	2407	2823	573302827	573303260	4.160000e-110	409.0
31	TraesCS2B01G539700	chr5A	90.214	327	10	9	982	1289	617237483	617237160	1.500000e-109	407.0
32	TraesCS2B01G539700	chr5A	85.678	398	37	8	1785	2171	667565603	667565991	6.960000e-108	401.0
33	TraesCS2B01G539700	chr5A	87.081	209	16	5	1974	2171	241457954	241457746	4.490000e-55	226.0
34	TraesCS2B01G539700	chr5A	97.802	91	2	0	2726	2816	606018798	606018708	1.660000e-34	158.0
35	TraesCS2B01G539700	chr5A	82.796	186	20	12	2724	2898	606045207	606045023	5.980000e-34	156.0
36	TraesCS2B01G539700	chr5A	93.617	94	3	2	2567	2657	606018997	606018904	2.170000e-28	137.0
37	TraesCS2B01G539700	chr5A	92.000	100	5	2	2567	2663	606045391	606045292	2.170000e-28	137.0
38	TraesCS2B01G539700	chr3B	91.405	605	28	7	2166	2768	739981798	739981216	0.000000e+00	808.0
39	TraesCS2B01G539700	chr3B	98.420	443	7	0	3	445	75601265	75601707	0.000000e+00	780.0
40	TraesCS2B01G539700	chr3B	98.194	443	8	0	1	443	1819076	1818634	0.000000e+00	774.0
41	TraesCS2B01G539700	chr3B	95.227	440	16	3	446	883	515159718	515160154	0.000000e+00	691.0
42	TraesCS2B01G539700	chr3B	93.498	446	28	1	446	890	115242453	115242008	0.000000e+00	662.0
43	TraesCS2B01G539700	chr3B	89.153	378	38	3	2180	2554	739983071	739982694	6.760000e-128	468.0
44	TraesCS2B01G539700	chr6B	98.430	446	6	1	1	445	21410263	21409818	0.000000e+00	784.0
45	TraesCS2B01G539700	chr6B	97.778	450	8	2	1	449	206047375	206047823	0.000000e+00	774.0
46	TraesCS2B01G539700	chr1B	98.206	446	7	1	1	445	359579264	359578819	0.000000e+00	778.0
47	TraesCS2B01G539700	chr1B	98.206	446	7	1	1	445	516998302	516998747	0.000000e+00	778.0
48	TraesCS2B01G539700	chr1B	97.577	454	9	2	1	453	359572402	359571950	0.000000e+00	776.0
49	TraesCS2B01G539700	chr1B	85.670	321	36	8	2190	2507	677993051	677992738	3.330000e-86	329.0
50	TraesCS2B01G539700	chr3A	87.844	691	36	8	2175	2863	693460166	693459522	0.000000e+00	767.0
51	TraesCS2B01G539700	chr3A	89.037	374	29	7	2191	2554	693461371	693461000	1.890000e-123	453.0
52	TraesCS2B01G539700	chr3A	87.500	400	28	7	1783	2171	703851562	703851174	4.100000e-120	442.0
53	TraesCS2B01G539700	chr3A	85.961	406	32	10	1777	2171	354908882	354909273	1.160000e-110	411.0
54	TraesCS2B01G539700	chr3A	98.020	101	2	0	2713	2813	693460890	693460790	4.590000e-40	176.0
55	TraesCS2B01G539700	chr5D	88.487	608	41	16	2993	3572	393440725	393440119	0.000000e+00	708.0
56	TraesCS2B01G539700	chr5D	88.423	596	55	5	3181	3773	494235664	494235080	0.000000e+00	706.0
57	TraesCS2B01G539700	chr5D	83.430	519	52	19	2407	2895	454119495	454120009	6.810000e-123	451.0
58	TraesCS2B01G539700	chr5D	89.722	360	24	10	3045	3391	46863959	46863600	8.810000e-122	448.0
59	TraesCS2B01G539700	chr5D	90.598	351	14	14	927	1261	494236799	494236452	8.810000e-122	448.0
60	TraesCS2B01G539700	chr5D	89.167	360	26	6	3045	3391	414378424	414378065	1.910000e-118	436.0
61	TraesCS2B01G539700	chr5D	92.593	243	10	5	1708	1950	494236406	494236172	4.280000e-90	342.0
62	TraesCS2B01G539700	chr5D	91.275	149	11	2	3425	3572	46863602	46863455	7.570000e-48	202.0
63	TraesCS2B01G539700	chr5D	90.667	150	12	2	3425	3572	414378067	414377918	9.800000e-47	198.0
64	TraesCS2B01G539700	chr5D	95.327	107	3	2	2724	2829	484403884	484403779	7.680000e-38	169.0
65	TraesCS2B01G539700	chr5D	94.286	105	4	2	2726	2829	484411752	484411649	4.620000e-35	159.0
66	TraesCS2B01G539700	chr5D	96.739	92	2	1	2726	2817	484308725	484308635	7.740000e-33	152.0
67	TraesCS2B01G539700	chr5D	94.792	96	3	1	2726	2819	484308363	484308268	1.000000e-31	148.0
68	TraesCS2B01G539700	chr5D	95.604	91	4	0	2726	2816	484308155	484308065	3.600000e-31	147.0
69	TraesCS2B01G539700	chr5D	94.505	91	5	0	2567	2657	484404078	484403988	1.670000e-29	141.0
70	TraesCS2B01G539700	chr5D	93.407	91	6	0	2567	2657	484308560	484308470	7.790000e-28	135.0
71	TraesCS2B01G539700	chr5D	92.553	94	6	1	2724	2817	484415086	484414994	2.800000e-27	134.0
72	TraesCS2B01G539700	chr5D	90.000	100	7	2	2567	2663	484411938	484411839	4.690000e-25	126.0
73	TraesCS2B01G539700	chrUn	95.682	440	17	2	446	883	131818433	131818872	0.000000e+00	706.0
74	TraesCS2B01G539700	chrUn	95.455	440	18	2	446	883	4346019	4345580	0.000000e+00	701.0
75	TraesCS2B01G539700	chrUn	95.455	440	18	2	446	883	378240359	378239920	0.000000e+00	701.0
76	TraesCS2B01G539700	chrUn	88.611	360	28	5	3045	3391	84995958	84996317	4.130000e-115	425.0
77	TraesCS2B01G539700	chrUn	87.814	279	23	5	3045	3312	397261310	397261588	2.590000e-82	316.0
78	TraesCS2B01G539700	chrUn	88.079	151	15	3	3425	3572	84996315	84996465	4.590000e-40	176.0
79	TraesCS2B01G539700	chrUn	89.091	110	11	1	3425	3533	397261641	397261750	7.790000e-28	135.0
80	TraesCS2B01G539700	chr4A	91.389	511	36	7	3070	3572	578355074	578354564	0.000000e+00	693.0
81	TraesCS2B01G539700	chr4A	86.000	400	33	9	1783	2171	644921851	644921464	1.500000e-109	407.0
82	TraesCS2B01G539700	chr4A	85.849	106	8	5	2938	3039	644921415	644921313	6.110000e-19	106.0
83	TraesCS2B01G539700	chr2A	91.194	511	37	7	3070	3572	448225902	448225392	0.000000e+00	688.0
84	TraesCS2B01G539700	chr4B	91.000	500	38	6	3070	3562	38469550	38469051	0.000000e+00	667.0
85	TraesCS2B01G539700	chr4B	90.234	512	41	7	3070	3572	97316949	97317460	0.000000e+00	660.0
86	TraesCS2B01G539700	chr4B	86.700	406	32	8	1777	2171	145028656	145029050	8.870000e-117	431.0
87	TraesCS2B01G539700	chr4B	85.961	406	34	9	1777	2171	20175986	20176379	3.210000e-111	412.0
88	TraesCS2B01G539700	chr4B	85.849	106	10	5	2938	3039	145029099	145029203	1.700000e-19	108.0
89	TraesCS2B01G539700	chr7D	90.444	450	31	6	3146	3585	575362565	575362118	2.320000e-162	582.0
90	TraesCS2B01G539700	chr7D	88.000	400	26	7	1783	2171	180441631	180442019	1.890000e-123	453.0
91	TraesCS2B01G539700	chr7D	89.053	338	15	8	1708	2043	575362907	575362590	2.500000e-107	399.0
92	TraesCS2B01G539700	chr7D	87.328	363	19	7	949	1287	575363267	575362908	1.510000e-104	390.0
93	TraesCS2B01G539700	chr7D	82.380	437	31	18	1288	1697	146239080	146238663	5.530000e-89	339.0
94	TraesCS2B01G539700	chr7D	90.526	95	8	1	1469	1562	146238473	146238379	1.690000e-24	124.0
95	TraesCS2B01G539700	chr7D	100.000	29	0	0	898	926	575363291	575363263	2.000000e-03	54.7
96	TraesCS2B01G539700	chr5B	88.415	492	30	9	1696	2170	610546530	610546049	6.480000e-158	568.0
97	TraesCS2B01G539700	chr5B	83.044	519	49	24	2407	2895	555011079	555011588	6.860000e-118	435.0
98	TraesCS2B01G539700	chr5B	90.663	332	11	7	975	1289	610546854	610546526	1.490000e-114	424.0
99	TraesCS2B01G539700	chr5B	90.136	294	14	8	4172	4465	610543400	610543122	7.060000e-98	368.0
100	TraesCS2B01G539700	chr5B	92.857	98	6	1	2567	2663	595621017	595620920	1.670000e-29	141.0
101	TraesCS2B01G539700	chr4D	90.000	360	22	8	3045	3391	63852124	63852482	1.890000e-123	453.0
102	TraesCS2B01G539700	chr4D	88.920	361	25	8	3045	3391	220186817	220187176	8.870000e-117	431.0
103	TraesCS2B01G539700	chr4D	90.667	150	12	2	3425	3572	63852480	63852629	9.800000e-47	198.0
104	TraesCS2B01G539700	chr4D	88.667	150	15	2	3425	3572	220187174	220187323	9.870000e-42	182.0
105	TraesCS2B01G539700	chr6D	89.722	360	24	7	3045	3391	76675397	76675038	8.810000e-122	448.0
106	TraesCS2B01G539700	chr6D	86.750	400	31	6	1783	2171	150884673	150884285	4.130000e-115	425.0
107	TraesCS2B01G539700	chr6D	89.333	150	14	2	3425	3572	76675040	76674891	2.120000e-43	187.0
108	TraesCS2B01G539700	chr6D	86.792	106	9	5	2938	3039	150884236	150884132	3.650000e-21	113.0
109	TraesCS2B01G539700	chr1D	89.722	360	24	7	3045	3391	487507577	487507936	8.810000e-122	448.0
110	TraesCS2B01G539700	chr1D	89.071	183	14	5	2719	2898	486866771	486866592	5.810000e-54	222.0
111	TraesCS2B01G539700	chr1D	90.667	150	12	2	3425	3572	487507934	487508083	9.800000e-47	198.0
112	TraesCS2B01G539700	chr3D	88.889	360	27	7	3045	3391	358048773	358049132	8.870000e-117	431.0
113	TraesCS2B01G539700	chr3D	88.539	349	38	2	2207	2554	557704839	557704492	5.340000e-114	422.0
114	TraesCS2B01G539700	chr3D	86.500	400	31	9	1783	2171	86079399	86079012	6.910000e-113	418.0
115	TraesCS2B01G539700	chr3D	87.744	359	18	7	1777	2124	327311688	327312031	3.240000e-106	396.0
116	TraesCS2B01G539700	chr3D	93.333	240	12	3	2170	2407	557703625	557703388	7.110000e-93	351.0
117	TraesCS2B01G539700	chr3D	90.667	150	12	2	3425	3572	358049130	358049279	9.800000e-47	198.0
118	TraesCS2B01G539700	chr3D	94.574	129	6	1	2478	2606	557703388	557703261	9.800000e-47	198.0
119	TraesCS2B01G539700	chr3D	85.938	192	16	8	2713	2898	557704381	557704195	1.270000e-45	195.0
120	TraesCS2B01G539700	chr3D	85.849	106	10	5	2938	3039	86078963	86078859	1.700000e-19	108.0
121	TraesCS2B01G539700	chr2D	87.335	379	26	7	1804	2171	105779025	105778658	8.940000e-112	414.0
122	TraesCS2B01G539700	chr2D	86.979	384	28	7	1799	2171	91715457	91715829	3.210000e-111	412.0
123	TraesCS2B01G539700	chr2D	81.609	522	56	28	2405	2895	403328307	403327795	3.240000e-106	396.0
124	TraesCS2B01G539700	chr2D	85.849	106	10	5	2938	3039	91715878	91715982	1.700000e-19	108.0
125	TraesCS2B01G539700	chr2D	84.906	106	11	5	2938	3039	105778609	105778505	7.900000e-18	102.0
126	TraesCS2B01G539700	chr1A	87.603	363	29	7	3045	3391	315059585	315059223	1.500000e-109	407.0
127	TraesCS2B01G539700	chr1A	87.187	359	23	6	1777	2124	172893300	172892954	1.950000e-103	387.0
128	TraesCS2B01G539700	chr1A	89.865	148	13	2	3425	3570	315059225	315059078	5.900000e-44	189.0
129	TraesCS2B01G539700	chr6A	90.667	150	12	2	3425	3572	42934065	42933916	9.800000e-47	198.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G539700	chr2B	734853651	734858116	4465	False	8248.000000	8248	100.000000	1	4466	1	chr2B.!!$F3	4465
1	TraesCS2B01G539700	chr7A	665377228	665379815	2587	True	1666.500000	2900	88.564500	898	3937	2	chr7A.!!$R4	3039
2	TraesCS2B01G539700	chr7A	498258715	498259225	510	True	688.000000	688	91.194000	3070	3572	1	chr7A.!!$R3	502
3	TraesCS2B01G539700	chr7A	84571304	84571814	510	True	676.000000	676	90.802000	3070	3572	1	chr7A.!!$R1	502
4	TraesCS2B01G539700	chr7B	636623091	636627720	4629	True	816.500000	2268	94.398250	898	3896	4	chr7B.!!$R4	2998
5	TraesCS2B01G539700	chr7B	108561729	108562421	692	True	240.000000	348	87.883000	1293	1681	2	chr7B.!!$R3	388
6	TraesCS2B01G539700	chr5A	503374752	503375262	510	False	699.000000	699	91.585000	3070	3572	1	chr5A.!!$F2	502
7	TraesCS2B01G539700	chr5A	682620334	682620843	509	True	697.000000	697	91.585000	3070	3572	1	chr5A.!!$R3	502
8	TraesCS2B01G539700	chr5A	631551834	631552343	509	False	691.000000	691	91.373000	3070	3572	1	chr5A.!!$F4	502
9	TraesCS2B01G539700	chr5A	104959473	104959983	510	False	688.000000	688	91.194000	3070	3572	1	chr5A.!!$F1	502
10	TraesCS2B01G539700	chr5A	420433643	420434153	510	True	665.000000	665	90.411000	3070	3572	1	chr5A.!!$R2	502
11	TraesCS2B01G539700	chr5A	617235588	617237483	1895	True	631.000000	942	86.900000	982	4026	3	chr5A.!!$R6	3044
12	TraesCS2B01G539700	chr3B	739981216	739983071	1855	True	638.000000	808	90.279000	2166	2768	2	chr3B.!!$R3	602
13	TraesCS2B01G539700	chr3A	693459522	693461371	1849	True	465.333333	767	91.633667	2175	2863	3	chr3A.!!$R2	688
14	TraesCS2B01G539700	chr5D	393440119	393440725	606	True	708.000000	708	88.487000	2993	3572	1	chr5D.!!$R1	579
15	TraesCS2B01G539700	chr5D	494235080	494236799	1719	True	498.666667	706	90.538000	927	3773	3	chr5D.!!$R7	2846
16	TraesCS2B01G539700	chr5D	454119495	454120009	514	False	451.000000	451	83.430000	2407	2895	1	chr5D.!!$F1	488
17	TraesCS2B01G539700	chr5D	46863455	46863959	504	True	325.000000	448	90.498500	3045	3572	2	chr5D.!!$R2	527
18	TraesCS2B01G539700	chr5D	414377918	414378424	506	True	317.000000	436	89.917000	3045	3572	2	chr5D.!!$R3	527
19	TraesCS2B01G539700	chrUn	84995958	84996465	507	False	300.500000	425	88.345000	3045	3572	2	chrUn.!!$F2	527
20	TraesCS2B01G539700	chr4A	578354564	578355074	510	True	693.000000	693	91.389000	3070	3572	1	chr4A.!!$R1	502
21	TraesCS2B01G539700	chr4A	644921313	644921851	538	True	256.500000	407	85.924500	1783	3039	2	chr4A.!!$R2	1256
22	TraesCS2B01G539700	chr2A	448225392	448225902	510	True	688.000000	688	91.194000	3070	3572	1	chr2A.!!$R1	502
23	TraesCS2B01G539700	chr4B	97316949	97317460	511	False	660.000000	660	90.234000	3070	3572	1	chr4B.!!$F2	502
24	TraesCS2B01G539700	chr4B	145028656	145029203	547	False	269.500000	431	86.274500	1777	3039	2	chr4B.!!$F3	1262
25	TraesCS2B01G539700	chr7D	575362118	575363291	1173	True	356.425000	582	91.706250	898	3585	4	chr7D.!!$R2	2687
26	TraesCS2B01G539700	chr7D	146238379	146239080	701	True	231.500000	339	86.453000	1288	1697	2	chr7D.!!$R1	409
27	TraesCS2B01G539700	chr5B	610543122	610546854	3732	True	453.333333	568	89.738000	975	4465	3	chr5B.!!$R2	3490
28	TraesCS2B01G539700	chr5B	555011079	555011588	509	False	435.000000	435	83.044000	2407	2895	1	chr5B.!!$F1	488
29	TraesCS2B01G539700	chr4D	63852124	63852629	505	False	325.500000	453	90.333500	3045	3572	2	chr4D.!!$F1	527
30	TraesCS2B01G539700	chr4D	220186817	220187323	506	False	306.500000	431	88.793500	3045	3572	2	chr4D.!!$F2	527
31	TraesCS2B01G539700	chr6D	76674891	76675397	506	True	317.500000	448	89.527500	3045	3572	2	chr6D.!!$R1	527
32	TraesCS2B01G539700	chr6D	150884132	150884673	541	True	269.000000	425	86.771000	1783	3039	2	chr6D.!!$R2	1256
33	TraesCS2B01G539700	chr1D	487507577	487508083	506	False	323.000000	448	90.194500	3045	3572	2	chr1D.!!$F1	527
34	TraesCS2B01G539700	chr3D	358048773	358049279	506	False	314.500000	431	89.778000	3045	3572	2	chr3D.!!$F2	527
35	TraesCS2B01G539700	chr3D	557703261	557704839	1578	True	291.500000	422	90.596000	2170	2898	4	chr3D.!!$R2	728
36	TraesCS2B01G539700	chr3D	86078859	86079399	540	True	263.000000	418	86.174500	1783	3039	2	chr3D.!!$R1	1256
37	TraesCS2B01G539700	chr2D	403327795	403328307	512	True	396.000000	396	81.609000	2405	2895	1	chr2D.!!$R1	490
38	TraesCS2B01G539700	chr2D	91715457	91715982	525	False	260.000000	412	86.414000	1799	3039	2	chr2D.!!$F1	1240
39	TraesCS2B01G539700	chr2D	105778505	105779025	520	True	258.000000	414	86.120500	1804	3039	2	chr2D.!!$R2	1235
40	TraesCS2B01G539700	chr1A	315059078	315059585	507	True	298.000000	407	88.734000	3045	3570	2	chr1A.!!$R2	525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
489	490	0.029834	ACGAGTGTCACCGTGTGTAC	59.970	55.000	15.69	0.00	37.64	2.90	F
658	659	0.102300	GAAGAGCCGAGAAGAGAGCC	59.898	60.000	0.00	0.00	0.00	4.70	F
1440	1509	0.038166	TGGTGACTGGCCATCTTTCC	59.962	55.000	5.51	6.53	0.00	3.13	F
1644	1724	0.031857	TTGCGGCATTGTCCAGTTTG	59.968	50.000	2.28	0.00	0.00	2.93	F
1647	1727	1.734117	GGCATTGTCCAGTTTGCGC	60.734	57.895	0.00	0.00	35.95	6.09	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1425	1494	0.322816	TGCAGGAAAGATGGCCAGTC	60.323	55.000	13.05	9.33	0.00	3.51	R
1618	1698	1.268896	GGACAATGCCGCAAGATGATG	60.269	52.381	0.00	0.00	43.02	3.07	R
2281	2476	2.917933	CCCAAAGATATCTCGGCAACA	58.082	47.619	5.51	0.00	0.00	3.33	R
3459	5396	3.403038	ACTTTGTGAAGCAGCTTATCGT	58.597	40.909	7.92	0.00	36.29	3.73	R
3538	5534	8.882415	TCATCCAAGGTAATCGTCTAAATAAC	57.118	34.615	0.00	0.00	0.00	1.89	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	5.613358	CTCTTTTGCGCCTATATAAAGGG	57.387	43.478	4.18	1.49	37.11	3.95
23	24	5.298989	TCTTTTGCGCCTATATAAAGGGA	57.701	39.130	4.18	0.00	37.11	4.20
24	25	5.305585	TCTTTTGCGCCTATATAAAGGGAG	58.694	41.667	4.18	0.00	37.11	4.30
25	26	3.695830	TTGCGCCTATATAAAGGGAGG	57.304	47.619	4.18	0.00	37.11	4.30
26	27	1.906574	TGCGCCTATATAAAGGGAGGG	59.093	52.381	4.18	0.00	37.11	4.30
27	28	1.209747	GCGCCTATATAAAGGGAGGGG	59.790	57.143	0.00	0.00	43.15	4.79
28	29	2.829023	CGCCTATATAAAGGGAGGGGA	58.171	52.381	0.00	0.00	42.98	4.81
29	30	2.766828	CGCCTATATAAAGGGAGGGGAG	59.233	54.545	0.00	0.00	42.98	4.30
30	31	3.116174	GCCTATATAAAGGGAGGGGAGG	58.884	54.545	0.00	0.00	37.11	4.30
31	32	3.737263	CCTATATAAAGGGAGGGGAGGG	58.263	54.545	0.00	0.00	32.55	4.30
32	33	3.343138	CCTATATAAAGGGAGGGGAGGGA	59.657	52.174	0.00	0.00	32.55	4.20
33	34	3.586859	ATATAAAGGGAGGGGAGGGAG	57.413	52.381	0.00	0.00	0.00	4.30
34	35	0.272235	ATAAAGGGAGGGGAGGGAGG	59.728	60.000	0.00	0.00	0.00	4.30
35	36	1.909806	TAAAGGGAGGGGAGGGAGGG	61.910	65.000	0.00	0.00	0.00	4.30
38	39	4.825679	GGAGGGGAGGGAGGGGTG	62.826	77.778	0.00	0.00	0.00	4.61
39	40	4.825679	GAGGGGAGGGAGGGGTGG	62.826	77.778	0.00	0.00	0.00	4.61
55	56	3.527427	GGCCGCACCAATAAGCCC	61.527	66.667	0.00	0.00	37.66	5.19
56	57	2.440247	GCCGCACCAATAAGCCCT	60.440	61.111	0.00	0.00	0.00	5.19
57	58	2.774799	GCCGCACCAATAAGCCCTG	61.775	63.158	0.00	0.00	0.00	4.45
58	59	2.120909	CCGCACCAATAAGCCCTGG	61.121	63.158	0.00	0.00	38.77	4.45
59	60	2.774799	CGCACCAATAAGCCCTGGC	61.775	63.158	0.00	0.00	42.33	4.85
78	79	2.285668	CCTCCCTCCTCCCTGCAA	60.286	66.667	0.00	0.00	0.00	4.08
79	80	2.674220	CCTCCCTCCTCCCTGCAAC	61.674	68.421	0.00	0.00	0.00	4.17
80	81	1.920325	CTCCCTCCTCCCTGCAACA	60.920	63.158	0.00	0.00	0.00	3.33
81	82	2.190488	CTCCCTCCTCCCTGCAACAC	62.190	65.000	0.00	0.00	0.00	3.32
82	83	2.352805	CCTCCTCCCTGCAACACC	59.647	66.667	0.00	0.00	0.00	4.16
83	84	2.227036	CCTCCTCCCTGCAACACCT	61.227	63.158	0.00	0.00	0.00	4.00
84	85	1.298014	CTCCTCCCTGCAACACCTC	59.702	63.158	0.00	0.00	0.00	3.85
85	86	2.190488	CTCCTCCCTGCAACACCTCC	62.190	65.000	0.00	0.00	0.00	4.30
86	87	2.227036	CCTCCCTGCAACACCTCCT	61.227	63.158	0.00	0.00	0.00	3.69
87	88	1.298014	CTCCCTGCAACACCTCCTC	59.702	63.158	0.00	0.00	0.00	3.71
88	89	2.190488	CTCCCTGCAACACCTCCTCC	62.190	65.000	0.00	0.00	0.00	4.30
89	90	2.227036	CCCTGCAACACCTCCTCCT	61.227	63.158	0.00	0.00	0.00	3.69
90	91	1.298014	CCTGCAACACCTCCTCCTC	59.702	63.158	0.00	0.00	0.00	3.71
91	92	1.298014	CTGCAACACCTCCTCCTCC	59.702	63.158	0.00	0.00	0.00	4.30
92	93	1.152030	TGCAACACCTCCTCCTCCT	60.152	57.895	0.00	0.00	0.00	3.69
93	94	1.194781	TGCAACACCTCCTCCTCCTC	61.195	60.000	0.00	0.00	0.00	3.71
94	95	1.904990	GCAACACCTCCTCCTCCTCC	61.905	65.000	0.00	0.00	0.00	4.30
95	96	1.305381	AACACCTCCTCCTCCTCCG	60.305	63.158	0.00	0.00	0.00	4.63
96	97	2.443016	CACCTCCTCCTCCTCCGG	60.443	72.222	0.00	0.00	0.00	5.14
97	98	2.947785	ACCTCCTCCTCCTCCGGT	60.948	66.667	0.00	0.00	0.00	5.28
98	99	1.621822	ACCTCCTCCTCCTCCGGTA	60.622	63.158	0.00	0.00	0.00	4.02
99	100	1.151908	CCTCCTCCTCCTCCGGTAG	59.848	68.421	0.00	0.00	0.00	3.18
100	101	1.647334	CCTCCTCCTCCTCCGGTAGT	61.647	65.000	0.00	0.00	0.00	2.73
101	102	0.259356	CTCCTCCTCCTCCGGTAGTT	59.741	60.000	0.00	0.00	0.00	2.24
102	103	0.033405	TCCTCCTCCTCCGGTAGTTG	60.033	60.000	0.00	0.00	0.00	3.16
103	104	1.677637	CCTCCTCCTCCGGTAGTTGC	61.678	65.000	0.00	0.00	0.00	4.17
104	105	0.684805	CTCCTCCTCCGGTAGTTGCT	60.685	60.000	0.00	0.00	0.00	3.91
105	106	0.252103	TCCTCCTCCGGTAGTTGCTT	60.252	55.000	0.00	0.00	0.00	3.91
106	107	1.006281	TCCTCCTCCGGTAGTTGCTTA	59.994	52.381	0.00	0.00	0.00	3.09
107	108	1.409427	CCTCCTCCGGTAGTTGCTTAG	59.591	57.143	0.00	0.00	0.00	2.18
108	109	0.822164	TCCTCCGGTAGTTGCTTAGC	59.178	55.000	0.00	0.00	0.00	3.09
109	110	0.527817	CCTCCGGTAGTTGCTTAGCG	60.528	60.000	0.00	7.68	42.43	4.26
110	111	0.454600	CTCCGGTAGTTGCTTAGCGA	59.545	55.000	0.00	0.00	44.76	4.93
111	112	0.889994	TCCGGTAGTTGCTTAGCGAA	59.110	50.000	0.00	0.00	44.76	4.70
112	113	1.135199	TCCGGTAGTTGCTTAGCGAAG	60.135	52.381	0.00	1.67	44.76	3.79
125	126	4.394712	CGAAGCCCTGCCGGAGTT	62.395	66.667	5.05	0.00	0.00	3.01
126	127	2.436824	GAAGCCCTGCCGGAGTTC	60.437	66.667	5.05	0.00	0.00	3.01
127	128	2.930562	AAGCCCTGCCGGAGTTCT	60.931	61.111	5.05	0.00	0.00	3.01
128	129	3.259633	AAGCCCTGCCGGAGTTCTG	62.260	63.158	5.05	0.00	0.00	3.02
130	131	3.710722	CCCTGCCGGAGTTCTGCT	61.711	66.667	5.05	0.00	0.00	4.24
131	132	2.435586	CCTGCCGGAGTTCTGCTG	60.436	66.667	5.05	0.00	0.00	4.41
132	133	3.123620	CTGCCGGAGTTCTGCTGC	61.124	66.667	5.05	0.00	0.00	5.25
133	134	3.889134	CTGCCGGAGTTCTGCTGCA	62.889	63.158	5.05	0.88	35.02	4.41
134	135	2.437359	GCCGGAGTTCTGCTGCAT	60.437	61.111	5.05	0.00	35.02	3.96
135	136	2.467826	GCCGGAGTTCTGCTGCATC	61.468	63.158	5.05	0.00	35.02	3.91
136	137	1.817099	CCGGAGTTCTGCTGCATCC	60.817	63.158	1.31	6.35	35.02	3.51
137	138	1.078918	CGGAGTTCTGCTGCATCCA	60.079	57.895	17.46	0.00	35.02	3.41
138	139	1.364626	CGGAGTTCTGCTGCATCCAC	61.365	60.000	17.46	8.80	35.02	4.02
139	140	1.028868	GGAGTTCTGCTGCATCCACC	61.029	60.000	13.66	6.28	35.45	4.61
140	141	0.321919	GAGTTCTGCTGCATCCACCA	60.322	55.000	1.31	0.00	0.00	4.17
141	142	0.607489	AGTTCTGCTGCATCCACCAC	60.607	55.000	1.31	0.00	0.00	4.16
142	143	1.303561	TTCTGCTGCATCCACCACC	60.304	57.895	1.31	0.00	0.00	4.61
143	144	2.034532	CTGCTGCATCCACCACCA	59.965	61.111	1.31	0.00	0.00	4.17
144	145	2.282391	TGCTGCATCCACCACCAC	60.282	61.111	0.00	0.00	0.00	4.16
145	146	3.434319	GCTGCATCCACCACCACG	61.434	66.667	0.00	0.00	0.00	4.94
146	147	3.434319	CTGCATCCACCACCACGC	61.434	66.667	0.00	0.00	0.00	5.34
149	150	4.697756	CATCCACCACCACGCCGT	62.698	66.667	0.00	0.00	0.00	5.68
150	151	4.388499	ATCCACCACCACGCCGTC	62.388	66.667	0.00	0.00	0.00	4.79
163	164	2.887568	CCGTCGTGCTGCTGGATC	60.888	66.667	0.00	0.00	0.00	3.36
164	165	2.182791	CGTCGTGCTGCTGGATCT	59.817	61.111	0.00	0.00	0.00	2.75
165	166	1.446792	CGTCGTGCTGCTGGATCTT	60.447	57.895	0.00	0.00	0.00	2.40
166	167	1.416813	CGTCGTGCTGCTGGATCTTC	61.417	60.000	0.00	0.00	0.00	2.87
167	168	0.390340	GTCGTGCTGCTGGATCTTCA	60.390	55.000	0.00	0.00	0.00	3.02
168	169	0.538584	TCGTGCTGCTGGATCTTCAT	59.461	50.000	0.00	0.00	0.00	2.57
169	170	0.935898	CGTGCTGCTGGATCTTCATC	59.064	55.000	0.00	0.00	0.00	2.92
170	171	1.741394	CGTGCTGCTGGATCTTCATCA	60.741	52.381	0.00	0.00	0.00	3.07
171	172	2.362736	GTGCTGCTGGATCTTCATCAA	58.637	47.619	0.00	0.00	0.00	2.57
172	173	2.097142	GTGCTGCTGGATCTTCATCAAC	59.903	50.000	0.00	0.00	0.00	3.18
173	174	1.674962	GCTGCTGGATCTTCATCAACC	59.325	52.381	0.00	0.00	0.00	3.77
174	175	2.683152	GCTGCTGGATCTTCATCAACCT	60.683	50.000	0.00	0.00	0.00	3.50
175	176	3.204526	CTGCTGGATCTTCATCAACCTC	58.795	50.000	0.00	0.00	0.00	3.85
176	177	2.842496	TGCTGGATCTTCATCAACCTCT	59.158	45.455	0.00	0.00	0.00	3.69
177	178	3.118482	TGCTGGATCTTCATCAACCTCTC	60.118	47.826	0.00	0.00	0.00	3.20
178	179	3.743899	GCTGGATCTTCATCAACCTCTCC	60.744	52.174	0.00	0.00	0.00	3.71
179	180	3.710677	CTGGATCTTCATCAACCTCTCCT	59.289	47.826	0.00	0.00	0.00	3.69
180	181	4.107072	TGGATCTTCATCAACCTCTCCTT	58.893	43.478	0.00	0.00	0.00	3.36
181	182	4.163078	TGGATCTTCATCAACCTCTCCTTC	59.837	45.833	0.00	0.00	0.00	3.46
182	183	4.444164	GGATCTTCATCAACCTCTCCTTCC	60.444	50.000	0.00	0.00	0.00	3.46
183	184	2.840651	TCTTCATCAACCTCTCCTTCCC	59.159	50.000	0.00	0.00	0.00	3.97
184	185	1.584724	TCATCAACCTCTCCTTCCCC	58.415	55.000	0.00	0.00	0.00	4.81
185	186	0.548510	CATCAACCTCTCCTTCCCCC	59.451	60.000	0.00	0.00	0.00	5.40
186	187	0.423544	ATCAACCTCTCCTTCCCCCT	59.576	55.000	0.00	0.00	0.00	4.79
187	188	0.196118	TCAACCTCTCCTTCCCCCTT	59.804	55.000	0.00	0.00	0.00	3.95
188	189	0.329596	CAACCTCTCCTTCCCCCTTG	59.670	60.000	0.00	0.00	0.00	3.61
189	190	1.501654	AACCTCTCCTTCCCCCTTGC	61.502	60.000	0.00	0.00	0.00	4.01
190	191	1.617839	CCTCTCCTTCCCCCTTGCT	60.618	63.158	0.00	0.00	0.00	3.91
191	192	1.606531	CTCTCCTTCCCCCTTGCTG	59.393	63.158	0.00	0.00	0.00	4.41
192	193	1.919600	CTCTCCTTCCCCCTTGCTGG	61.920	65.000	0.00	0.00	0.00	4.85
193	194	1.925455	CTCCTTCCCCCTTGCTGGA	60.925	63.158	0.00	0.00	38.35	3.86
194	195	1.230281	TCCTTCCCCCTTGCTGGAT	60.230	57.895	0.00	0.00	38.35	3.41
195	196	1.228510	CCTTCCCCCTTGCTGGATC	59.771	63.158	0.00	0.00	38.35	3.36
196	197	1.574526	CCTTCCCCCTTGCTGGATCA	61.575	60.000	0.00	0.00	38.35	2.92
197	198	0.332632	CTTCCCCCTTGCTGGATCAA	59.667	55.000	0.00	0.00	38.35	2.57
198	199	0.332632	TTCCCCCTTGCTGGATCAAG	59.667	55.000	0.00	0.00	42.23	3.02
199	200	0.549902	TCCCCCTTGCTGGATCAAGA	60.550	55.000	0.00	0.00	44.61	3.02
200	201	0.332632	CCCCCTTGCTGGATCAAGAA	59.667	55.000	0.00	0.00	44.61	2.52
201	202	1.684248	CCCCCTTGCTGGATCAAGAAG	60.684	57.143	0.00	2.15	44.61	2.85
202	203	1.684248	CCCCTTGCTGGATCAAGAAGG	60.684	57.143	16.02	16.02	44.61	3.46
203	204	1.283029	CCCTTGCTGGATCAAGAAGGA	59.717	52.381	21.16	3.00	44.61	3.36
204	205	2.641305	CCTTGCTGGATCAAGAAGGAG	58.359	52.381	17.24	0.00	44.61	3.69
205	206	2.641305	CTTGCTGGATCAAGAAGGAGG	58.359	52.381	0.00	0.00	44.61	4.30
206	207	1.956869	TGCTGGATCAAGAAGGAGGA	58.043	50.000	0.00	0.00	0.00	3.71
207	208	1.836166	TGCTGGATCAAGAAGGAGGAG	59.164	52.381	0.00	0.00	0.00	3.69
208	209	2.114616	GCTGGATCAAGAAGGAGGAGA	58.885	52.381	0.00	0.00	0.00	3.71
209	210	2.158971	GCTGGATCAAGAAGGAGGAGAC	60.159	54.545	0.00	0.00	0.00	3.36
210	211	2.100584	CTGGATCAAGAAGGAGGAGACG	59.899	54.545	0.00	0.00	0.00	4.18
211	212	2.104170	GGATCAAGAAGGAGGAGACGT	58.896	52.381	0.00	0.00	0.00	4.34
212	213	2.100087	GGATCAAGAAGGAGGAGACGTC	59.900	54.545	7.70	7.70	0.00	4.34
213	214	2.287977	TCAAGAAGGAGGAGACGTCA	57.712	50.000	19.50	0.00	0.00	4.35
214	215	2.808919	TCAAGAAGGAGGAGACGTCAT	58.191	47.619	19.50	2.61	0.00	3.06
215	216	2.755655	TCAAGAAGGAGGAGACGTCATC	59.244	50.000	19.50	12.22	32.43	2.92
218	219	2.413765	GGAGGAGACGTCATCCGC	59.586	66.667	19.50	20.50	43.53	5.54
219	220	2.122167	GGAGGAGACGTCATCCGCT	61.122	63.158	25.02	13.25	43.53	5.52
220	221	1.357334	GAGGAGACGTCATCCGCTC	59.643	63.158	19.50	11.72	42.02	5.03
221	222	2.413765	GGAGACGTCATCCGCTCC	59.586	66.667	19.50	10.91	45.63	4.70
222	223	2.024871	GAGACGTCATCCGCTCCG	59.975	66.667	19.50	0.00	41.42	4.63
223	224	2.750637	AGACGTCATCCGCTCCGT	60.751	61.111	19.50	0.00	41.42	4.69
224	225	1.434622	GAGACGTCATCCGCTCCGTA	61.435	60.000	19.50	0.00	41.42	4.02
225	226	1.298190	GACGTCATCCGCTCCGTAC	60.298	63.158	11.55	0.00	41.42	3.67
226	227	2.352001	CGTCATCCGCTCCGTACG	60.352	66.667	8.69	8.69	0.00	3.67
227	228	2.796651	GTCATCCGCTCCGTACGT	59.203	61.111	15.21	0.00	0.00	3.57
228	229	1.585521	GTCATCCGCTCCGTACGTG	60.586	63.158	15.21	7.80	0.00	4.49
229	230	2.042259	TCATCCGCTCCGTACGTGT	61.042	57.895	15.21	0.00	0.00	4.49
230	231	1.872234	CATCCGCTCCGTACGTGTG	60.872	63.158	15.21	12.57	0.00	3.82
231	232	2.338015	ATCCGCTCCGTACGTGTGT	61.338	57.895	15.21	0.00	0.00	3.72
232	233	1.870055	ATCCGCTCCGTACGTGTGTT	61.870	55.000	15.21	1.07	0.00	3.32
233	234	2.369629	CCGCTCCGTACGTGTGTTG	61.370	63.158	15.21	0.00	0.00	3.33
234	235	1.370778	CGCTCCGTACGTGTGTTGA	60.371	57.895	15.21	1.92	0.00	3.18
235	236	0.935831	CGCTCCGTACGTGTGTTGAA	60.936	55.000	15.21	0.00	0.00	2.69
236	237	0.505655	GCTCCGTACGTGTGTTGAAC	59.494	55.000	15.21	0.00	0.00	3.18
237	238	0.774098	CTCCGTACGTGTGTTGAACG	59.226	55.000	15.21	0.00	46.32	3.95
238	239	1.199859	CCGTACGTGTGTTGAACGC	59.800	57.895	15.21	1.20	44.80	4.84
243	244	4.893241	GTGTGTTGAACGCGAAGG	57.107	55.556	15.93	0.00	0.00	3.46
244	245	2.011453	GTGTGTTGAACGCGAAGGT	58.989	52.632	15.93	0.00	0.00	3.50
245	246	0.315869	GTGTGTTGAACGCGAAGGTG	60.316	55.000	15.93	0.00	0.00	4.00
246	247	1.368850	GTGTTGAACGCGAAGGTGC	60.369	57.895	15.93	0.00	0.00	5.01
247	248	1.522806	TGTTGAACGCGAAGGTGCT	60.523	52.632	15.93	0.00	0.00	4.40
248	249	1.082756	GTTGAACGCGAAGGTGCTG	60.083	57.895	15.93	0.00	0.00	4.41
249	250	1.522806	TTGAACGCGAAGGTGCTGT	60.523	52.632	15.93	0.00	0.00	4.40
250	251	1.495584	TTGAACGCGAAGGTGCTGTC	61.496	55.000	15.93	0.00	0.00	3.51
251	252	2.665185	AACGCGAAGGTGCTGTCC	60.665	61.111	15.93	0.00	0.00	4.02
254	255	2.665185	GCGAAGGTGCTGTCCGTT	60.665	61.111	0.00	0.00	0.00	4.44
255	256	2.668280	GCGAAGGTGCTGTCCGTTC	61.668	63.158	0.00	0.00	0.00	3.95
256	257	2.372690	CGAAGGTGCTGTCCGTTCG	61.373	63.158	0.00	0.00	34.60	3.95
257	258	2.027625	GAAGGTGCTGTCCGTTCGG	61.028	63.158	4.74	4.74	0.00	4.30
258	259	4.681978	AGGTGCTGTCCGTTCGGC	62.682	66.667	6.35	2.90	39.84	5.54
259	260	4.980805	GGTGCTGTCCGTTCGGCA	62.981	66.667	6.35	6.51	45.77	5.69
261	262	3.923864	TGCTGTCCGTTCGGCACT	61.924	61.111	6.35	0.00	43.56	4.40
262	263	2.260434	GCTGTCCGTTCGGCACTA	59.740	61.111	6.35	0.00	39.28	2.74
263	264	1.805945	GCTGTCCGTTCGGCACTAG	60.806	63.158	6.35	0.00	39.28	2.57
264	265	1.153823	CTGTCCGTTCGGCACTAGG	60.154	63.158	6.35	0.00	0.00	3.02
265	266	1.874345	CTGTCCGTTCGGCACTAGGT	61.874	60.000	6.35	0.00	0.00	3.08
266	267	1.153881	GTCCGTTCGGCACTAGGTC	60.154	63.158	6.35	0.00	0.00	3.85
267	268	1.604308	TCCGTTCGGCACTAGGTCA	60.604	57.895	6.35	0.00	0.00	4.02
268	269	0.968901	TCCGTTCGGCACTAGGTCAT	60.969	55.000	6.35	0.00	0.00	3.06
269	270	0.527817	CCGTTCGGCACTAGGTCATC	60.528	60.000	0.00	0.00	0.00	2.92
270	271	0.866061	CGTTCGGCACTAGGTCATCG	60.866	60.000	0.00	0.00	0.00	3.84
271	272	0.527817	GTTCGGCACTAGGTCATCGG	60.528	60.000	0.00	0.00	0.00	4.18
272	273	0.968901	TTCGGCACTAGGTCATCGGT	60.969	55.000	0.00	0.00	0.00	4.69
273	274	1.226974	CGGCACTAGGTCATCGGTG	60.227	63.158	0.00	0.00	0.00	4.94
274	275	1.663379	CGGCACTAGGTCATCGGTGA	61.663	60.000	0.00	0.00	32.12	4.02
275	276	0.753262	GGCACTAGGTCATCGGTGAT	59.247	55.000	0.00	0.00	36.60	3.06
276	277	1.269831	GGCACTAGGTCATCGGTGATC	60.270	57.143	0.00	0.00	36.60	2.92
278	279	2.544694	GCACTAGGTCATCGGTGATCTG	60.545	54.545	21.90	13.32	45.33	2.90
279	280	2.952310	CACTAGGTCATCGGTGATCTGA	59.048	50.000	21.90	4.97	45.33	3.27
280	281	3.381590	CACTAGGTCATCGGTGATCTGAA	59.618	47.826	21.90	1.07	45.33	3.02
281	282	4.038522	CACTAGGTCATCGGTGATCTGAAT	59.961	45.833	21.90	3.69	45.33	2.57
282	283	4.651503	ACTAGGTCATCGGTGATCTGAATT	59.348	41.667	21.90	0.00	45.33	2.17
283	284	5.833667	ACTAGGTCATCGGTGATCTGAATTA	59.166	40.000	21.90	0.00	45.33	1.40
284	285	4.950050	AGGTCATCGGTGATCTGAATTAC	58.050	43.478	11.55	0.00	44.11	1.89
285	286	3.736252	GGTCATCGGTGATCTGAATTACG	59.264	47.826	0.00	0.00	36.60	3.18
286	287	3.736252	GTCATCGGTGATCTGAATTACGG	59.264	47.826	0.00	0.00	36.60	4.02
287	288	2.218953	TCGGTGATCTGAATTACGGC	57.781	50.000	0.00	0.00	0.00	5.68
288	289	0.852777	CGGTGATCTGAATTACGGCG	59.147	55.000	4.80	4.80	0.00	6.46
289	290	1.535226	CGGTGATCTGAATTACGGCGA	60.535	52.381	16.62	0.00	0.00	5.54
290	291	2.128035	GGTGATCTGAATTACGGCGAG	58.872	52.381	16.62	0.00	0.00	5.03
291	292	2.481449	GGTGATCTGAATTACGGCGAGT	60.481	50.000	16.62	0.00	0.00	4.18
292	293	3.243301	GGTGATCTGAATTACGGCGAGTA	60.243	47.826	16.62	0.00	0.00	2.59
293	294	3.729716	GTGATCTGAATTACGGCGAGTAC	59.270	47.826	16.62	1.20	34.56	2.73
294	295	2.463553	TCTGAATTACGGCGAGTACG	57.536	50.000	16.62	0.00	42.93	3.67
295	296	2.009051	TCTGAATTACGGCGAGTACGA	58.991	47.619	16.62	0.00	42.66	3.43
296	297	2.107178	CTGAATTACGGCGAGTACGAC	58.893	52.381	16.62	0.00	45.02	4.34
297	298	1.739466	TGAATTACGGCGAGTACGACT	59.261	47.619	16.62	0.00	46.46	4.18
298	299	2.223112	TGAATTACGGCGAGTACGACTC	60.223	50.000	16.62	0.00	46.46	3.36
299	300	0.659957	ATTACGGCGAGTACGACTCC	59.340	55.000	16.62	0.00	46.46	3.85
300	301	0.673333	TTACGGCGAGTACGACTCCA	60.673	55.000	16.62	0.00	46.46	3.86
301	302	0.462581	TACGGCGAGTACGACTCCAT	60.463	55.000	16.62	0.00	46.46	3.41
302	303	1.009900	CGGCGAGTACGACTCCATC	60.010	63.158	0.00	1.13	46.46	3.51
303	304	1.712018	CGGCGAGTACGACTCCATCA	61.712	60.000	0.00	0.00	46.46	3.07
304	305	0.454600	GGCGAGTACGACTCCATCAA	59.545	55.000	8.73	0.00	45.04	2.57
305	306	1.546834	GCGAGTACGACTCCATCAAC	58.453	55.000	8.73	0.00	42.12	3.18
306	307	1.798079	GCGAGTACGACTCCATCAACC	60.798	57.143	8.73	0.00	42.12	3.77
307	308	1.202268	CGAGTACGACTCCATCAACCC	60.202	57.143	8.73	0.00	42.12	4.11
308	309	1.136500	GAGTACGACTCCATCAACCCC	59.864	57.143	0.00	0.00	39.28	4.95
309	310	0.179119	GTACGACTCCATCAACCCCG	60.179	60.000	0.00	0.00	0.00	5.73
310	311	0.612732	TACGACTCCATCAACCCCGT	60.613	55.000	0.00	0.00	0.00	5.28
311	312	1.295423	CGACTCCATCAACCCCGTT	59.705	57.895	0.00	0.00	0.00	4.44
312	313	0.739813	CGACTCCATCAACCCCGTTC	60.740	60.000	0.00	0.00	0.00	3.95
313	314	0.392595	GACTCCATCAACCCCGTTCC	60.393	60.000	0.00	0.00	0.00	3.62
314	315	1.131303	ACTCCATCAACCCCGTTCCA	61.131	55.000	0.00	0.00	0.00	3.53
315	316	0.255890	CTCCATCAACCCCGTTCCAT	59.744	55.000	0.00	0.00	0.00	3.41
316	317	0.701731	TCCATCAACCCCGTTCCATT	59.298	50.000	0.00	0.00	0.00	3.16
317	318	0.817013	CCATCAACCCCGTTCCATTG	59.183	55.000	0.00	0.00	0.00	2.82
318	319	1.615651	CCATCAACCCCGTTCCATTGA	60.616	52.381	0.00	0.00	35.64	2.57
319	320	2.166829	CATCAACCCCGTTCCATTGAA	58.833	47.619	0.00	0.00	34.88	2.69
320	321	1.611519	TCAACCCCGTTCCATTGAAC	58.388	50.000	0.00	0.00	46.05	3.18
327	328	3.676091	GTTCCATTGAACGCTTCCG	57.324	52.632	0.00	0.00	41.35	4.30
328	329	0.454452	GTTCCATTGAACGCTTCCGC	60.454	55.000	0.00	0.00	41.35	5.54
329	330	0.605319	TTCCATTGAACGCTTCCGCT	60.605	50.000	0.00	0.00	38.22	5.52
330	331	0.605319	TCCATTGAACGCTTCCGCTT	60.605	50.000	0.00	0.00	38.22	4.68
331	332	1.083489	CCATTGAACGCTTCCGCTTA	58.917	50.000	0.00	0.00	38.22	3.09
332	333	1.062587	CCATTGAACGCTTCCGCTTAG	59.937	52.381	0.00	0.00	38.22	2.18
333	334	0.727398	ATTGAACGCTTCCGCTTAGC	59.273	50.000	0.00	0.00	38.22	3.09
346	347	2.892784	GCTTAGCGATCTACAAGGGT	57.107	50.000	0.00	0.00	0.00	4.34
348	349	4.522722	GCTTAGCGATCTACAAGGGTAT	57.477	45.455	0.00	0.00	0.00	2.73
349	350	4.238514	GCTTAGCGATCTACAAGGGTATG	58.761	47.826	0.00	0.00	0.00	2.39
350	351	4.262079	GCTTAGCGATCTACAAGGGTATGT	60.262	45.833	0.00	0.00	37.32	2.29
351	352	5.048224	GCTTAGCGATCTACAAGGGTATGTA	60.048	44.000	0.00	0.00	34.75	2.29
360	361	4.408182	ACAAGGGTATGTAGATGCACTC	57.592	45.455	0.00	0.00	25.83	3.51
361	362	4.033709	ACAAGGGTATGTAGATGCACTCT	58.966	43.478	0.00	0.00	38.06	3.24
362	363	4.100189	ACAAGGGTATGTAGATGCACTCTC	59.900	45.833	0.00	0.00	35.28	3.20
363	364	3.235200	AGGGTATGTAGATGCACTCTCC	58.765	50.000	0.00	0.00	35.28	3.71
364	365	3.116939	AGGGTATGTAGATGCACTCTCCT	60.117	47.826	0.00	0.00	35.28	3.69
365	366	3.643792	GGGTATGTAGATGCACTCTCCTT	59.356	47.826	0.00	0.00	35.28	3.36
366	367	4.262249	GGGTATGTAGATGCACTCTCCTTC	60.262	50.000	0.00	0.00	35.28	3.46
367	368	4.262249	GGTATGTAGATGCACTCTCCTTCC	60.262	50.000	0.00	0.00	35.28	3.46
368	369	2.111384	TGTAGATGCACTCTCCTTCCC	58.889	52.381	0.00	0.00	35.28	3.97
369	370	1.414550	GTAGATGCACTCTCCTTCCCC	59.585	57.143	0.00	0.00	35.28	4.81
370	371	0.043940	AGATGCACTCTCCTTCCCCT	59.956	55.000	0.00	0.00	0.00	4.79
371	372	0.467804	GATGCACTCTCCTTCCCCTC	59.532	60.000	0.00	0.00	0.00	4.30
372	373	1.333636	ATGCACTCTCCTTCCCCTCG	61.334	60.000	0.00	0.00	0.00	4.63
373	374	1.985116	GCACTCTCCTTCCCCTCGT	60.985	63.158	0.00	0.00	0.00	4.18
374	375	1.545706	GCACTCTCCTTCCCCTCGTT	61.546	60.000	0.00	0.00	0.00	3.85
375	376	0.247736	CACTCTCCTTCCCCTCGTTG	59.752	60.000	0.00	0.00	0.00	4.10
376	377	1.219393	CTCTCCTTCCCCTCGTTGC	59.781	63.158	0.00	0.00	0.00	4.17
377	378	1.229209	TCTCCTTCCCCTCGTTGCT	60.229	57.895	0.00	0.00	0.00	3.91
378	379	1.078848	CTCCTTCCCCTCGTTGCTG	60.079	63.158	0.00	0.00	0.00	4.41
379	380	2.045926	CCTTCCCCTCGTTGCTGG	60.046	66.667	0.00	0.00	0.00	4.85
380	381	2.750350	CTTCCCCTCGTTGCTGGT	59.250	61.111	0.00	0.00	0.00	4.00
381	382	1.073199	CTTCCCCTCGTTGCTGGTT	59.927	57.895	0.00	0.00	0.00	3.67
382	383	0.537371	CTTCCCCTCGTTGCTGGTTT	60.537	55.000	0.00	0.00	0.00	3.27
383	384	0.536460	TTCCCCTCGTTGCTGGTTTC	60.536	55.000	0.00	0.00	0.00	2.78
384	385	1.073199	CCCCTCGTTGCTGGTTTCT	59.927	57.895	0.00	0.00	0.00	2.52
385	386	0.955919	CCCCTCGTTGCTGGTTTCTC	60.956	60.000	0.00	0.00	0.00	2.87
386	387	0.955919	CCCTCGTTGCTGGTTTCTCC	60.956	60.000	0.00	0.00	0.00	3.71
387	388	0.250295	CCTCGTTGCTGGTTTCTCCA	60.250	55.000	0.00	0.00	45.01	3.86
388	389	1.611673	CCTCGTTGCTGGTTTCTCCAT	60.612	52.381	0.00	0.00	46.12	3.41
389	390	2.354704	CCTCGTTGCTGGTTTCTCCATA	60.355	50.000	0.00	0.00	46.12	2.74
390	391	2.932614	CTCGTTGCTGGTTTCTCCATAG	59.067	50.000	0.00	0.00	46.12	2.23
391	392	2.565391	TCGTTGCTGGTTTCTCCATAGA	59.435	45.455	0.00	0.00	46.12	1.98
392	393	3.197766	TCGTTGCTGGTTTCTCCATAGAT	59.802	43.478	0.00	0.00	46.12	1.98
393	394	4.404394	TCGTTGCTGGTTTCTCCATAGATA	59.596	41.667	0.00	0.00	46.12	1.98
394	395	4.747108	CGTTGCTGGTTTCTCCATAGATAG	59.253	45.833	0.00	0.00	46.12	2.08
395	396	5.451937	CGTTGCTGGTTTCTCCATAGATAGA	60.452	44.000	0.00	0.00	46.12	1.98
396	397	6.529220	GTTGCTGGTTTCTCCATAGATAGAT	58.471	40.000	0.00	0.00	46.12	1.98
397	398	6.352016	TGCTGGTTTCTCCATAGATAGATC	57.648	41.667	0.00	0.00	46.12	2.75
398	399	6.080682	TGCTGGTTTCTCCATAGATAGATCT	58.919	40.000	0.00	0.00	46.12	2.75
399	400	6.556495	TGCTGGTTTCTCCATAGATAGATCTT	59.444	38.462	0.00	0.00	46.12	2.40
400	401	6.873076	GCTGGTTTCTCCATAGATAGATCTTG	59.127	42.308	0.00	0.00	46.12	3.02
401	402	7.308450	TGGTTTCTCCATAGATAGATCTTGG	57.692	40.000	0.00	1.69	41.93	3.61
402	403	6.846505	TGGTTTCTCCATAGATAGATCTTGGT	59.153	38.462	0.00	0.00	41.93	3.67
403	404	7.158021	GGTTTCTCCATAGATAGATCTTGGTG	58.842	42.308	0.00	3.27	36.89	4.17
404	405	7.015682	GGTTTCTCCATAGATAGATCTTGGTGA	59.984	40.741	0.00	5.80	36.71	4.02
405	406	7.531857	TTCTCCATAGATAGATCTTGGTGAC	57.468	40.000	12.54	0.00	37.34	3.67
406	407	6.614657	TCTCCATAGATAGATCTTGGTGACA	58.385	40.000	0.00	0.00	38.32	3.58
407	408	6.491745	TCTCCATAGATAGATCTTGGTGACAC	59.508	42.308	0.00	0.00	42.67	3.67
408	409	5.241728	TCCATAGATAGATCTTGGTGACACG	59.758	44.000	0.00	0.00	42.67	4.49
409	410	5.010112	CCATAGATAGATCTTGGTGACACGT	59.990	44.000	0.00	0.00	42.67	4.49
410	411	6.206829	CCATAGATAGATCTTGGTGACACGTA	59.793	42.308	0.00	0.00	42.67	3.57
411	412	5.759506	AGATAGATCTTGGTGACACGTAG	57.240	43.478	0.00	0.00	42.67	3.51
412	413	4.580995	AGATAGATCTTGGTGACACGTAGG	59.419	45.833	0.00	0.00	42.67	3.18
413	414	2.803956	AGATCTTGGTGACACGTAGGA	58.196	47.619	0.00	0.00	42.67	2.94
414	415	3.162666	AGATCTTGGTGACACGTAGGAA	58.837	45.455	0.00	0.00	42.67	3.36
415	416	3.576982	AGATCTTGGTGACACGTAGGAAA	59.423	43.478	0.00	0.00	42.67	3.13
416	417	4.223032	AGATCTTGGTGACACGTAGGAAAT	59.777	41.667	0.00	0.00	42.67	2.17
417	418	4.345859	TCTTGGTGACACGTAGGAAATT	57.654	40.909	0.00	0.00	42.67	1.82
418	419	4.710324	TCTTGGTGACACGTAGGAAATTT	58.290	39.130	0.00	0.00	42.67	1.82
419	420	5.127491	TCTTGGTGACACGTAGGAAATTTT	58.873	37.500	0.00	0.00	42.67	1.82
420	421	5.591067	TCTTGGTGACACGTAGGAAATTTTT	59.409	36.000	0.00	0.00	42.67	1.94
421	422	5.176407	TGGTGACACGTAGGAAATTTTTG	57.824	39.130	0.00	0.00	33.40	2.44
422	423	4.882427	TGGTGACACGTAGGAAATTTTTGA	59.118	37.500	0.00	0.00	33.40	2.69
423	424	5.357314	TGGTGACACGTAGGAAATTTTTGAA	59.643	36.000	0.00	0.00	33.40	2.69
424	425	6.039941	TGGTGACACGTAGGAAATTTTTGAAT	59.960	34.615	0.00	0.00	33.40	2.57
425	426	6.921307	GGTGACACGTAGGAAATTTTTGAATT	59.079	34.615	0.00	0.00	0.00	2.17
426	427	7.436970	GGTGACACGTAGGAAATTTTTGAATTT	59.563	33.333	0.00	0.00	35.26	1.82
427	428	9.453325	GTGACACGTAGGAAATTTTTGAATTTA	57.547	29.630	0.00	0.00	32.92	1.40
430	431	8.921670	ACACGTAGGAAATTTTTGAATTTATGC	58.078	29.630	0.00	0.00	32.92	3.14
431	432	9.139174	CACGTAGGAAATTTTTGAATTTATGCT	57.861	29.630	0.00	0.00	32.92	3.79
436	437	9.705290	AGGAAATTTTTGAATTTATGCTACGTT	57.295	25.926	0.00	0.00	32.92	3.99
437	438	9.952341	GGAAATTTTTGAATTTATGCTACGTTC	57.048	29.630	0.00	0.00	32.92	3.95
438	439	9.952341	GAAATTTTTGAATTTATGCTACGTTCC	57.048	29.630	0.00	0.00	32.92	3.62
439	440	8.474006	AATTTTTGAATTTATGCTACGTTCCC	57.526	30.769	0.00	0.00	0.00	3.97
440	441	5.570234	TTTGAATTTATGCTACGTTCCCC	57.430	39.130	0.00	0.00	0.00	4.81
441	442	4.223556	TGAATTTATGCTACGTTCCCCA	57.776	40.909	0.00	0.00	0.00	4.96
442	443	4.590918	TGAATTTATGCTACGTTCCCCAA	58.409	39.130	0.00	0.00	0.00	4.12
443	444	4.396790	TGAATTTATGCTACGTTCCCCAAC	59.603	41.667	0.00	0.00	0.00	3.77
444	445	3.420300	TTTATGCTACGTTCCCCAACA	57.580	42.857	0.00	0.00	32.14	3.33
445	446	3.420300	TTATGCTACGTTCCCCAACAA	57.580	42.857	0.00	0.00	32.14	2.83
446	447	2.507407	ATGCTACGTTCCCCAACAAT	57.493	45.000	0.00	0.00	32.14	2.71
447	448	3.637911	ATGCTACGTTCCCCAACAATA	57.362	42.857	0.00	0.00	32.14	1.90
448	449	3.637911	TGCTACGTTCCCCAACAATAT	57.362	42.857	0.00	0.00	32.14	1.28
449	450	4.757019	TGCTACGTTCCCCAACAATATA	57.243	40.909	0.00	0.00	32.14	0.86
450	451	5.298989	TGCTACGTTCCCCAACAATATAT	57.701	39.130	0.00	0.00	32.14	0.86
451	452	6.422344	TGCTACGTTCCCCAACAATATATA	57.578	37.500	0.00	0.00	32.14	0.86
452	453	6.460781	TGCTACGTTCCCCAACAATATATAG	58.539	40.000	0.00	0.00	32.14	1.31
453	454	5.873164	GCTACGTTCCCCAACAATATATAGG	59.127	44.000	0.00	0.00	32.14	2.57
454	455	4.648651	ACGTTCCCCAACAATATATAGGC	58.351	43.478	0.00	0.00	32.14	3.93
455	456	4.007659	CGTTCCCCAACAATATATAGGCC	58.992	47.826	0.00	0.00	32.14	5.19
456	457	3.992943	TCCCCAACAATATATAGGCCG	57.007	47.619	0.00	0.00	0.00	6.13
457	458	3.522759	TCCCCAACAATATATAGGCCGA	58.477	45.455	0.00	0.00	0.00	5.54
458	459	3.517901	TCCCCAACAATATATAGGCCGAG	59.482	47.826	0.00	0.00	0.00	4.63
459	460	3.370527	CCCCAACAATATATAGGCCGAGG	60.371	52.174	0.00	0.00	0.00	4.63
460	461	3.270877	CCAACAATATATAGGCCGAGGC	58.729	50.000	5.37	5.37	41.06	4.70
461	462	2.930040	CAACAATATATAGGCCGAGGCG	59.070	50.000	8.14	0.00	43.06	5.52
462	463	1.134788	ACAATATATAGGCCGAGGCGC	60.135	52.381	8.14	0.00	43.06	6.53
479	480	4.293648	CCGCCCACACGAGTGTCA	62.294	66.667	12.07	0.00	44.39	3.58
480	481	3.036084	CGCCCACACGAGTGTCAC	61.036	66.667	12.07	0.00	44.39	3.67
481	482	2.665185	GCCCACACGAGTGTCACC	60.665	66.667	12.07	0.00	44.39	4.02
482	483	2.355837	CCCACACGAGTGTCACCG	60.356	66.667	12.07	10.96	44.39	4.94
483	484	2.415843	CCACACGAGTGTCACCGT	59.584	61.111	12.07	12.04	44.39	4.83
487	488	3.203442	ACGAGTGTCACCGTGTGT	58.797	55.556	15.69	0.00	37.64	3.72
488	489	2.407268	ACGAGTGTCACCGTGTGTA	58.593	52.632	15.69	0.00	37.64	2.90
489	490	0.029834	ACGAGTGTCACCGTGTGTAC	59.970	55.000	15.69	0.00	37.64	2.90
507	508	4.899239	GCATGGCGGACGAGGGAG	62.899	72.222	0.00	0.00	0.00	4.30
508	509	4.227134	CATGGCGGACGAGGGAGG	62.227	72.222	0.00	0.00	0.00	4.30
536	537	4.394078	CGCGTCGTCCGGTCTTCA	62.394	66.667	0.00	0.00	36.94	3.02
537	538	2.804090	GCGTCGTCCGGTCTTCAC	60.804	66.667	0.00	0.00	36.94	3.18
538	539	2.952245	CGTCGTCCGGTCTTCACT	59.048	61.111	0.00	0.00	0.00	3.41
539	540	1.442184	CGTCGTCCGGTCTTCACTG	60.442	63.158	0.00	0.00	0.00	3.66
540	541	1.733399	GTCGTCCGGTCTTCACTGC	60.733	63.158	0.00	0.00	0.00	4.40
541	542	2.805353	CGTCCGGTCTTCACTGCG	60.805	66.667	0.00	0.00	0.00	5.18
542	543	3.112709	GTCCGGTCTTCACTGCGC	61.113	66.667	0.00	0.00	0.00	6.09
543	544	4.373116	TCCGGTCTTCACTGCGCC	62.373	66.667	4.18	0.00	0.00	6.53
569	570	2.660552	GGCATCAATGGCGCATGC	60.661	61.111	18.42	18.42	43.58	4.06
570	571	2.415843	GCATCAATGGCGCATGCT	59.584	55.556	19.13	0.57	39.92	3.79
571	572	1.949133	GCATCAATGGCGCATGCTG	60.949	57.895	19.13	12.74	39.92	4.41
572	573	1.731093	CATCAATGGCGCATGCTGA	59.269	52.632	17.13	12.53	42.25	4.26
573	574	0.594028	CATCAATGGCGCATGCTGAC	60.594	55.000	17.13	12.19	42.25	3.51
574	575	1.731433	ATCAATGGCGCATGCTGACC	61.731	55.000	17.13	14.65	42.25	4.02
575	576	3.511595	AATGGCGCATGCTGACCG	61.512	61.111	17.13	0.00	42.25	4.79
604	605	4.424566	CGCGGCAGCTTTGGCATT	62.425	61.111	7.38	0.00	42.32	3.56
605	606	2.812178	GCGGCAGCTTTGGCATTG	60.812	61.111	0.00	0.00	41.70	2.82
606	607	2.964174	CGGCAGCTTTGGCATTGA	59.036	55.556	0.46	0.00	41.70	2.57
607	608	1.514087	CGGCAGCTTTGGCATTGAT	59.486	52.632	0.46	0.00	41.70	2.57
608	609	0.108520	CGGCAGCTTTGGCATTGATT	60.109	50.000	0.46	0.00	41.70	2.57
609	610	1.648504	GGCAGCTTTGGCATTGATTC	58.351	50.000	0.00	0.00	41.70	2.52
610	611	1.274596	GCAGCTTTGGCATTGATTCG	58.725	50.000	0.00	0.00	41.70	3.34
611	612	1.274596	CAGCTTTGGCATTGATTCGC	58.725	50.000	0.00	0.00	41.70	4.70
616	617	4.612536	GGCATTGATTCGCCGCGG	62.613	66.667	24.05	24.05	38.82	6.46
617	618	4.612536	GCATTGATTCGCCGCGGG	62.613	66.667	29.38	17.41	0.00	6.13
618	619	2.894879	CATTGATTCGCCGCGGGA	60.895	61.111	29.38	19.62	0.00	5.14
619	620	2.124901	ATTGATTCGCCGCGGGAA	60.125	55.556	29.38	26.61	38.75	3.97
620	621	1.747367	ATTGATTCGCCGCGGGAAA	60.747	52.632	29.38	13.60	37.97	3.13
621	622	1.988834	ATTGATTCGCCGCGGGAAAC	61.989	55.000	29.38	24.36	37.97	2.78
622	623	3.122323	GATTCGCCGCGGGAAACA	61.122	61.111	29.38	8.07	37.97	2.83
623	624	2.670251	ATTCGCCGCGGGAAACAA	60.670	55.556	29.38	7.70	37.97	2.83
624	625	2.577763	GATTCGCCGCGGGAAACAAG	62.578	60.000	29.38	0.00	37.97	3.16
627	628	4.038080	GCCGCGGGAAACAAGGTG	62.038	66.667	29.38	0.00	0.00	4.00
628	629	2.281208	CCGCGGGAAACAAGGTGA	60.281	61.111	20.10	0.00	0.00	4.02
629	630	1.674322	CCGCGGGAAACAAGGTGAT	60.674	57.895	20.10	0.00	0.00	3.06
630	631	1.501741	CGCGGGAAACAAGGTGATG	59.498	57.895	0.00	0.00	0.00	3.07
631	632	1.212751	GCGGGAAACAAGGTGATGC	59.787	57.895	0.00	0.00	0.00	3.91
632	633	1.501741	CGGGAAACAAGGTGATGCG	59.498	57.895	0.00	0.00	0.00	4.73
633	634	1.883021	GGGAAACAAGGTGATGCGG	59.117	57.895	0.00	0.00	0.00	5.69
634	635	0.608035	GGGAAACAAGGTGATGCGGA	60.608	55.000	0.00	0.00	0.00	5.54
635	636	0.521735	GGAAACAAGGTGATGCGGAC	59.478	55.000	0.00	0.00	0.00	4.79
636	637	0.165944	GAAACAAGGTGATGCGGACG	59.834	55.000	0.00	0.00	0.00	4.79
637	638	0.250124	AAACAAGGTGATGCGGACGA	60.250	50.000	0.00	0.00	0.00	4.20
638	639	0.949105	AACAAGGTGATGCGGACGAC	60.949	55.000	0.00	0.00	0.00	4.34
649	650	2.100603	GGACGACGAAGAGCCGAG	59.899	66.667	0.00	0.00	0.00	4.63
650	651	2.396955	GGACGACGAAGAGCCGAGA	61.397	63.158	0.00	0.00	0.00	4.04
651	652	1.500844	GACGACGAAGAGCCGAGAA	59.499	57.895	0.00	0.00	0.00	2.87
652	653	0.521659	GACGACGAAGAGCCGAGAAG	60.522	60.000	0.00	0.00	0.00	2.85
653	654	0.954449	ACGACGAAGAGCCGAGAAGA	60.954	55.000	0.00	0.00	0.00	2.87
654	655	0.247894	CGACGAAGAGCCGAGAAGAG	60.248	60.000	0.00	0.00	0.00	2.85
655	656	1.088306	GACGAAGAGCCGAGAAGAGA	58.912	55.000	0.00	0.00	0.00	3.10
656	657	1.063469	GACGAAGAGCCGAGAAGAGAG	59.937	57.143	0.00	0.00	0.00	3.20
657	658	0.248458	CGAAGAGCCGAGAAGAGAGC	60.248	60.000	0.00	0.00	0.00	4.09
658	659	0.102300	GAAGAGCCGAGAAGAGAGCC	59.898	60.000	0.00	0.00	0.00	4.70
659	660	1.662438	AAGAGCCGAGAAGAGAGCCG	61.662	60.000	0.00	0.00	0.00	5.52
660	661	2.361865	AGCCGAGAAGAGAGCCGT	60.362	61.111	0.00	0.00	0.00	5.68
661	662	2.202676	GCCGAGAAGAGAGCCGTG	60.203	66.667	0.00	0.00	0.00	4.94
662	663	2.995872	GCCGAGAAGAGAGCCGTGT	61.996	63.158	0.00	0.00	0.00	4.49
663	664	1.137825	CCGAGAAGAGAGCCGTGTC	59.862	63.158	0.00	0.00	0.00	3.67
664	665	1.226156	CGAGAAGAGAGCCGTGTCG	60.226	63.158	0.00	0.00	34.35	4.35
665	666	1.515304	GAGAAGAGAGCCGTGTCGC	60.515	63.158	0.00	0.00	0.00	5.19
666	667	1.928706	GAGAAGAGAGCCGTGTCGCT	61.929	60.000	0.00	0.00	43.42	4.93
667	668	1.803519	GAAGAGAGCCGTGTCGCTG	60.804	63.158	0.00	0.00	39.87	5.18
668	669	2.201436	GAAGAGAGCCGTGTCGCTGA	62.201	60.000	0.00	0.00	39.87	4.26
669	670	2.479412	AAGAGAGCCGTGTCGCTGAC	62.479	60.000	2.32	2.32	39.87	3.51
670	671	3.268965	GAGAGCCGTGTCGCTGACA	62.269	63.158	7.20	7.20	39.87	3.58
698	699	4.992294	GCGGCTTTTTCGCGCCAA	62.992	61.111	0.00	0.00	46.62	4.52
699	700	2.354072	CGGCTTTTTCGCGCCAAA	60.354	55.556	0.00	0.00	46.62	3.28
700	701	1.946650	CGGCTTTTTCGCGCCAAAA	60.947	52.632	8.92	8.92	46.62	2.44
701	702	1.562691	GGCTTTTTCGCGCCAAAAC	59.437	52.632	12.58	2.57	45.59	2.43
702	703	1.148759	GGCTTTTTCGCGCCAAAACA	61.149	50.000	12.58	4.11	45.59	2.83
703	704	0.229500	GCTTTTTCGCGCCAAAACAG	59.771	50.000	12.58	13.26	0.00	3.16
704	705	1.555477	CTTTTTCGCGCCAAAACAGT	58.445	45.000	12.58	0.00	0.00	3.55
705	706	1.923864	CTTTTTCGCGCCAAAACAGTT	59.076	42.857	12.58	0.00	0.00	3.16
706	707	1.551145	TTTTCGCGCCAAAACAGTTC	58.449	45.000	8.92	0.00	0.00	3.01
707	708	0.590230	TTTCGCGCCAAAACAGTTCG	60.590	50.000	0.00	0.00	0.00	3.95
708	709	2.975167	TTCGCGCCAAAACAGTTCGC	62.975	55.000	0.00	6.96	42.05	4.70
709	710	2.729491	GCGCCAAAACAGTTCGCC	60.729	61.111	0.00	0.00	39.91	5.54
710	711	2.050442	CGCCAAAACAGTTCGCCC	60.050	61.111	0.00	0.00	0.00	6.13
711	712	2.840066	CGCCAAAACAGTTCGCCCA	61.840	57.895	0.00	0.00	0.00	5.36
712	713	1.007387	GCCAAAACAGTTCGCCCAG	60.007	57.895	0.00	0.00	0.00	4.45
713	714	1.007387	CCAAAACAGTTCGCCCAGC	60.007	57.895	0.00	0.00	0.00	4.85
778	779	2.049156	GCTGTTTTCGGCCCAAGC	60.049	61.111	0.00	0.00	45.68	4.01
788	789	2.973082	GCCCAAGCCAGCGAAAAT	59.027	55.556	0.00	0.00	0.00	1.82
789	790	1.153765	GCCCAAGCCAGCGAAAATC	60.154	57.895	0.00	0.00	0.00	2.17
790	791	1.137404	CCCAAGCCAGCGAAAATCG	59.863	57.895	0.00	0.00	43.89	3.34
791	792	1.137404	CCAAGCCAGCGAAAATCGG	59.863	57.895	1.64	0.00	40.84	4.18
792	793	1.137404	CAAGCCAGCGAAAATCGGG	59.863	57.895	1.64	0.00	40.84	5.14
793	794	2.700773	AAGCCAGCGAAAATCGGGC	61.701	57.895	10.72	10.72	44.11	6.13
794	795	3.134127	GCCAGCGAAAATCGGGCT	61.134	61.111	11.24	0.00	41.74	5.19
795	796	3.102097	CCAGCGAAAATCGGGCTC	58.898	61.111	1.64	0.00	40.84	4.70
796	797	2.472909	CCAGCGAAAATCGGGCTCC	61.473	63.158	1.64	0.00	40.84	4.70
797	798	1.450312	CAGCGAAAATCGGGCTCCT	60.450	57.895	1.64	0.00	40.84	3.69
798	799	1.450312	AGCGAAAATCGGGCTCCTG	60.450	57.895	1.64	0.00	40.84	3.86
799	800	2.472909	GCGAAAATCGGGCTCCTGG	61.473	63.158	1.64	0.00	40.84	4.45
800	801	1.819632	CGAAAATCGGGCTCCTGGG	60.820	63.158	0.00	0.00	36.00	4.45
801	802	1.607612	GAAAATCGGGCTCCTGGGA	59.392	57.895	0.00	0.00	0.00	4.37
802	803	0.748367	GAAAATCGGGCTCCTGGGAC	60.748	60.000	0.00	0.00	0.00	4.46
803	804	2.536997	AAAATCGGGCTCCTGGGACG	62.537	60.000	0.00	0.00	0.00	4.79
809	810	4.803426	GCTCCTGGGACGCGACTG	62.803	72.222	15.93	6.62	0.00	3.51
810	811	4.135153	CTCCTGGGACGCGACTGG	62.135	72.222	15.93	15.71	0.00	4.00
818	819	4.922026	ACGCGACTGGGCCGTTTT	62.922	61.111	15.93	0.00	0.00	2.43
819	820	3.656045	CGCGACTGGGCCGTTTTT	61.656	61.111	0.00	0.00	0.00	1.94
860	861	2.679716	CCTGGGGAGGCCTTTCTG	59.320	66.667	6.77	3.82	0.00	3.02
861	862	2.234296	CCTGGGGAGGCCTTTCTGT	61.234	63.158	6.77	0.00	0.00	3.41
862	863	1.001641	CTGGGGAGGCCTTTCTGTG	60.002	63.158	6.77	0.00	0.00	3.66
863	864	2.356667	GGGGAGGCCTTTCTGTGG	59.643	66.667	6.77	0.00	0.00	4.17
864	865	2.356667	GGGAGGCCTTTCTGTGGG	59.643	66.667	6.77	0.00	0.00	4.61
886	887	2.225792	GGCTGGAGATGCCCTTAGT	58.774	57.895	0.00	0.00	44.32	2.24
887	888	1.424638	GGCTGGAGATGCCCTTAGTA	58.575	55.000	0.00	0.00	44.32	1.82
888	889	1.981495	GGCTGGAGATGCCCTTAGTAT	59.019	52.381	0.00	0.00	44.32	2.12
889	890	2.289945	GGCTGGAGATGCCCTTAGTATG	60.290	54.545	0.00	0.00	44.32	2.39
890	891	2.370189	GCTGGAGATGCCCTTAGTATGT	59.630	50.000	0.00	0.00	34.97	2.29
891	892	3.805108	GCTGGAGATGCCCTTAGTATGTG	60.805	52.174	0.00	0.00	34.97	3.21
892	893	3.384168	TGGAGATGCCCTTAGTATGTGT	58.616	45.455	0.00	0.00	34.97	3.72
893	894	4.552674	TGGAGATGCCCTTAGTATGTGTA	58.447	43.478	0.00	0.00	34.97	2.90
894	895	4.588951	TGGAGATGCCCTTAGTATGTGTAG	59.411	45.833	0.00	0.00	34.97	2.74
895	896	4.561105	GAGATGCCCTTAGTATGTGTAGC	58.439	47.826	0.00	0.00	0.00	3.58
896	897	2.882927	TGCCCTTAGTATGTGTAGCG	57.117	50.000	0.00	0.00	0.00	4.26
926	927	1.539372	TCCCCGCCTCCAAAACCTA	60.539	57.895	0.00	0.00	0.00	3.08
927	928	1.135068	TCCCCGCCTCCAAAACCTAA	61.135	55.000	0.00	0.00	0.00	2.69
928	929	0.251430	CCCCGCCTCCAAAACCTAAA	60.251	55.000	0.00	0.00	0.00	1.85
930	931	0.885879	CCGCCTCCAAAACCTAAACC	59.114	55.000	0.00	0.00	0.00	3.27
931	932	1.546998	CCGCCTCCAAAACCTAAACCT	60.547	52.381	0.00	0.00	0.00	3.50
932	933	1.810755	CGCCTCCAAAACCTAAACCTC	59.189	52.381	0.00	0.00	0.00	3.85
1076	1114	0.445436	GCCTCGTGTGCTGATTCTTG	59.555	55.000	0.00	0.00	0.00	3.02
1312	1364	5.227908	ACAGAGTGTTATGTTCGTTTCGAT	58.772	37.500	0.00	0.00	35.23	3.59
1316	1368	6.034683	AGAGTGTTATGTTCGTTTCGATAAGC	59.965	38.462	0.00	0.00	35.23	3.09
1321	1373	7.219535	TGTTATGTTCGTTTCGATAAGCTACTC	59.780	37.037	0.00	0.00	35.23	2.59
1324	1376	5.571741	TGTTCGTTTCGATAAGCTACTCAAG	59.428	40.000	0.00	0.00	35.23	3.02
1358	1410	6.204882	AGTTACTCTGCGTTTTAAGCTTTGAT	59.795	34.615	3.20	0.00	35.28	2.57
1359	1411	4.787598	ACTCTGCGTTTTAAGCTTTGATG	58.212	39.130	3.20	0.00	35.28	3.07
1360	1412	4.515191	ACTCTGCGTTTTAAGCTTTGATGA	59.485	37.500	3.20	0.00	35.28	2.92
1407	1476	3.435105	TGTGAGCAATGTTTTTCGCTT	57.565	38.095	0.00	0.00	34.12	4.68
1425	1494	5.482006	TCGCTTAATGGATATGATCTGGTG	58.518	41.667	0.00	0.00	0.00	4.17
1426	1495	5.245977	TCGCTTAATGGATATGATCTGGTGA	59.754	40.000	0.00	0.00	0.00	4.02
1427	1496	5.349817	CGCTTAATGGATATGATCTGGTGAC	59.650	44.000	0.00	0.00	0.00	3.67
1429	1498	6.370994	GCTTAATGGATATGATCTGGTGACTG	59.629	42.308	0.00	0.00	0.00	3.51
1430	1499	4.904895	ATGGATATGATCTGGTGACTGG	57.095	45.455	0.00	0.00	0.00	4.00
1432	1501	2.289945	GGATATGATCTGGTGACTGGCC	60.290	54.545	0.00	0.00	0.00	5.36
1433	1502	1.878211	TATGATCTGGTGACTGGCCA	58.122	50.000	4.71	4.71	34.42	5.36
1434	1503	1.219773	ATGATCTGGTGACTGGCCAT	58.780	50.000	5.51	0.00	35.19	4.40
1435	1504	0.543277	TGATCTGGTGACTGGCCATC	59.457	55.000	5.51	7.08	35.19	3.51
1436	1505	0.835941	GATCTGGTGACTGGCCATCT	59.164	55.000	5.51	0.00	35.19	2.90
1437	1506	1.211457	GATCTGGTGACTGGCCATCTT	59.789	52.381	5.51	0.00	35.19	2.40
1440	1509	0.038166	TGGTGACTGGCCATCTTTCC	59.962	55.000	5.51	6.53	0.00	3.13
1442	1511	1.457346	GTGACTGGCCATCTTTCCTG	58.543	55.000	5.51	0.00	0.00	3.86
1446	1515	1.272872	ACTGGCCATCTTTCCTGCATT	60.273	47.619	5.51	0.00	0.00	3.56
1447	1516	2.025037	ACTGGCCATCTTTCCTGCATTA	60.025	45.455	5.51	0.00	0.00	1.90
1496	1576	5.542616	TGTTTTTGTTGTTTTGGCATCAG	57.457	34.783	0.00	0.00	0.00	2.90
1545	1625	2.009051	TGCATGCAGGTCAAGTATTCG	58.991	47.619	18.46	0.00	0.00	3.34
1555	1635	6.338146	CAGGTCAAGTATTCGGAATTAGTGA	58.662	40.000	8.76	7.10	0.00	3.41
1592	1672	2.232941	AGCTCCATTTGTGATGCCAAAG	59.767	45.455	0.00	0.00	37.71	2.77
1602	1682	3.266772	TGTGATGCCAAAGTTAGGATCCT	59.733	43.478	20.48	20.48	0.00	3.24
1630	1710	5.173664	TGCTATTATCTCATCATCTTGCGG	58.826	41.667	0.00	0.00	0.00	5.69
1644	1724	0.031857	TTGCGGCATTGTCCAGTTTG	59.968	50.000	2.28	0.00	0.00	2.93
1647	1727	1.734117	GGCATTGTCCAGTTTGCGC	60.734	57.895	0.00	0.00	35.95	6.09
1870	1961	3.959991	GACGGCAGGTTCTCCCAGC	62.960	68.421	0.00	0.00	35.43	4.85
2124	2277	5.437060	TGACTTAGTTTTCTGCTGGAAGTT	58.563	37.500	0.00	0.00	35.16	2.66
2143	2296	6.314152	GGAAGTTGAATCTCCTAAACACTAGC	59.686	42.308	0.00	0.00	0.00	3.42
2163	2351	2.821969	GCATGTCTGAAATGTCTGGGTT	59.178	45.455	9.47	0.00	0.00	4.11
2281	2476	8.141909	TCTTAATAGTGTAAATCAGCGCTGTAT	58.858	33.333	34.70	23.49	0.00	2.29
2444	2641	3.228188	TGCTTGGTCTTCTTTCATGGT	57.772	42.857	0.00	0.00	0.00	3.55
2452	2649	5.067674	TGGTCTTCTTTCATGGTCTTGTTTG	59.932	40.000	0.00	0.00	0.00	2.93
3318	5251	5.215252	AGCATTGTCCTAGTGCGTATATT	57.785	39.130	0.00	0.00	45.74	1.28
3538	5534	3.861840	TCCAGAATCTTAAGGAGCGTTG	58.138	45.455	1.85	0.00	0.00	4.10
3633	7418	7.214467	TGTATCTTGAATTCCTTGTTGAACC	57.786	36.000	2.27	0.00	0.00	3.62
3647	7432	4.263435	TGTTGAACCCGTACAAGAGTTTT	58.737	39.130	0.00	0.00	0.00	2.43
3699	7484	3.368539	CATTTGAATGGTTGGCAACATCG	59.631	43.478	29.63	9.61	38.55	3.84
3762	7549	8.635765	TGGCTAATTGAATCCTGGTATATTTC	57.364	34.615	0.00	0.00	0.00	2.17
3797	7613	8.141268	CCATTCTAGTTGTTGGTGTAATTTGTT	58.859	33.333	0.00	0.00	0.00	2.83
3872	7688	7.054491	AGATGTTTTGGCAGTTCAAACTAAT	57.946	32.000	12.28	1.07	37.08	1.73
3914	7740	4.082354	GGTAGAACATAGGTTGTCACGTCT	60.082	45.833	0.00	0.00	37.68	4.18
3921	7747	9.095065	GAACATAGGTTGTCACGTCTTATTTAT	57.905	33.333	0.00	0.00	37.68	1.40
3922	7748	9.444600	AACATAGGTTGTCACGTCTTATTTATT	57.555	29.630	0.00	0.00	37.68	1.40
3938	7764	8.629158	TCTTATTTATTTGGCGTTGCTTATCAT	58.371	29.630	0.00	0.00	0.00	2.45
3955	7781	3.500448	TCATTTGCACTACCCTGTTCA	57.500	42.857	0.00	0.00	0.00	3.18
3956	7782	4.032960	TCATTTGCACTACCCTGTTCAT	57.967	40.909	0.00	0.00	0.00	2.57
3987	7813	6.313744	AGACCTTTATTTTTGACCTTGACG	57.686	37.500	0.00	0.00	0.00	4.35
3989	7815	4.339814	ACCTTTATTTTTGACCTTGACGCA	59.660	37.500	0.00	0.00	0.00	5.24
3991	7817	5.925969	CCTTTATTTTTGACCTTGACGCATT	59.074	36.000	0.00	0.00	0.00	3.56
3998	7824	2.100584	TGACCTTGACGCATTTTGCTTT	59.899	40.909	0.00	0.00	42.25	3.51
3999	7825	2.472488	GACCTTGACGCATTTTGCTTTG	59.528	45.455	0.00	0.00	42.25	2.77
4026	7852	9.090103	CCATCTACCAATAGAACCTACTATGAA	57.910	37.037	0.00	0.00	40.88	2.57
4027	7853	9.915629	CATCTACCAATAGAACCTACTATGAAC	57.084	37.037	0.00	0.00	40.88	3.18
4028	7854	9.884814	ATCTACCAATAGAACCTACTATGAACT	57.115	33.333	0.00	0.00	40.88	3.01
4038	7864	9.014297	AGAACCTACTATGAACTTTCATTTTGG	57.986	33.333	9.68	9.85	45.13	3.28
4039	7865	7.158099	ACCTACTATGAACTTTCATTTTGGC	57.842	36.000	9.68	0.00	45.13	4.52
4040	7866	6.128007	ACCTACTATGAACTTTCATTTTGGCG	60.128	38.462	9.68	0.00	45.13	5.69
4041	7867	5.957842	ACTATGAACTTTCATTTTGGCGA	57.042	34.783	9.68	0.00	45.13	5.54
4042	7868	6.515272	ACTATGAACTTTCATTTTGGCGAT	57.485	33.333	9.68	0.00	45.13	4.58
4043	7869	6.555315	ACTATGAACTTTCATTTTGGCGATC	58.445	36.000	9.68	0.00	45.13	3.69
4044	7870	5.649782	ATGAACTTTCATTTTGGCGATCT	57.350	34.783	0.00	0.00	45.13	2.75
4045	7871	5.046910	TGAACTTTCATTTTGGCGATCTC	57.953	39.130	0.00	0.00	31.01	2.75
4046	7872	4.761739	TGAACTTTCATTTTGGCGATCTCT	59.238	37.500	0.00	0.00	31.01	3.10
4047	7873	4.691860	ACTTTCATTTTGGCGATCTCTG	57.308	40.909	0.00	0.00	0.00	3.35
4048	7874	3.119708	ACTTTCATTTTGGCGATCTCTGC	60.120	43.478	0.00	0.00	0.00	4.26
4119	9198	7.440198	TCTATTTTCTGATGAGGACTGCTATG	58.560	38.462	0.00	0.00	0.00	2.23
4120	9199	5.426689	TTTTCTGATGAGGACTGCTATGT	57.573	39.130	0.00	0.00	0.00	2.29
4131	9210	4.159693	AGGACTGCTATGTGAACGACAATA	59.840	41.667	0.00	0.00	38.36	1.90
4199	9432	2.012673	CAAGCATTCTCTACCACCTGC	58.987	52.381	0.00	0.00	0.00	4.85
4232	9465	2.200373	ACTCCACCCAAAATTCCTCG	57.800	50.000	0.00	0.00	0.00	4.63
4331	9564	4.021719	GCCATAGGGATAGCGTAAGTGTTA	60.022	45.833	0.00	0.00	36.22	2.41
4333	9566	5.475909	CCATAGGGATAGCGTAAGTGTTAGA	59.524	44.000	0.00	0.00	36.22	2.10
4334	9567	6.349445	CCATAGGGATAGCGTAAGTGTTAGAG	60.349	46.154	0.00	0.00	36.22	2.43
4347	9580	5.669164	AGTGTTAGAGAAGATTGAGGTCC	57.331	43.478	0.00	0.00	0.00	4.46
4356	9589	0.620556	GATTGAGGTCCAAGCAGGGA	59.379	55.000	0.00	0.00	40.66	4.20
4377	9610	5.010282	GGAATGTGAATACCCAGTCAAGTT	58.990	41.667	0.00	0.00	29.07	2.66
4383	9616	4.349636	TGAATACCCAGTCAAGTTTCTCCA	59.650	41.667	0.00	0.00	0.00	3.86
4385	9618	2.932261	ACCCAGTCAAGTTTCTCCAAC	58.068	47.619	0.00	0.00	35.32	3.77
4386	9619	2.241176	ACCCAGTCAAGTTTCTCCAACA	59.759	45.455	0.00	0.00	37.93	3.33
4387	9620	3.287222	CCCAGTCAAGTTTCTCCAACAA	58.713	45.455	0.00	0.00	37.93	2.83
4388	9621	3.699038	CCCAGTCAAGTTTCTCCAACAAA	59.301	43.478	0.00	0.00	37.93	2.83
4389	9622	4.202050	CCCAGTCAAGTTTCTCCAACAAAG	60.202	45.833	0.00	0.00	37.93	2.77
4390	9623	4.202050	CCAGTCAAGTTTCTCCAACAAAGG	60.202	45.833	0.00	0.00	37.93	3.11
4391	9624	4.640201	CAGTCAAGTTTCTCCAACAAAGGA	59.360	41.667	0.00	0.00	37.93	3.36
4392	9625	5.300286	CAGTCAAGTTTCTCCAACAAAGGAT	59.700	40.000	0.00	0.00	37.93	3.24
4393	9626	5.893824	AGTCAAGTTTCTCCAACAAAGGATT	59.106	36.000	0.00	0.00	37.93	3.01
4394	9627	5.979517	GTCAAGTTTCTCCAACAAAGGATTG	59.020	40.000	0.00	0.00	42.46	2.67
4411	9644	3.305539	GGATTGTCTTGCATGTTGCTTCA	60.306	43.478	0.75	0.00	45.31	3.02
4420	9653	3.380954	TGCATGTTGCTTCAAGTGAAAGA	59.619	39.130	0.75	0.00	45.31	2.52
4465	9698	6.261603	TCAACTAAATCATGATGCTGGATGAC	59.738	38.462	9.46	0.00	31.47	3.06

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	5.305585	TCCCTTTATATAGGCGCAAAAGAG	58.694	41.667	10.83	0.10	33.73	2.85
2	3	4.455877	CCTCCCTTTATATAGGCGCAAAAG	59.544	45.833	10.83	8.46	33.73	2.27
7	8	1.209747	CCCCTCCCTTTATATAGGCGC	59.790	57.143	0.00	0.00	33.73	6.53
8	9	2.766828	CTCCCCTCCCTTTATATAGGCG	59.233	54.545	3.79	0.00	33.73	5.52
9	10	3.116174	CCTCCCCTCCCTTTATATAGGC	58.884	54.545	3.79	0.00	33.73	3.93
10	11	3.343138	TCCCTCCCCTCCCTTTATATAGG	59.657	52.174	2.37	2.37	34.92	2.57
11	12	4.575264	CCTCCCTCCCCTCCCTTTATATAG	60.575	54.167	0.00	0.00	0.00	1.31
15	16	0.272235	CCTCCCTCCCCTCCCTTTAT	59.728	60.000	0.00	0.00	0.00	1.40
16	17	1.716689	CCTCCCTCCCCTCCCTTTA	59.283	63.158	0.00	0.00	0.00	1.85
17	18	2.461637	CCTCCCTCCCCTCCCTTT	59.538	66.667	0.00	0.00	0.00	3.11
18	19	3.711782	CCCTCCCTCCCCTCCCTT	61.712	72.222	0.00	0.00	0.00	3.95
21	22	4.825679	CACCCCTCCCTCCCCTCC	62.826	77.778	0.00	0.00	0.00	4.30
22	23	4.825679	CCACCCCTCCCTCCCCTC	62.826	77.778	0.00	0.00	0.00	4.30
38	39	3.527427	GGGCTTATTGGTGCGGCC	61.527	66.667	0.00	0.00	41.80	6.13
39	40	2.440247	AGGGCTTATTGGTGCGGC	60.440	61.111	0.00	0.00	0.00	6.53
40	41	2.120909	CCAGGGCTTATTGGTGCGG	61.121	63.158	0.00	0.00	0.00	5.69
41	42	2.774799	GCCAGGGCTTATTGGTGCG	61.775	63.158	2.30	0.00	36.81	5.34
42	43	2.774799	CGCCAGGGCTTATTGGTGC	61.775	63.158	8.91	0.00	38.06	5.01
43	44	2.774799	GCGCCAGGGCTTATTGGTG	61.775	63.158	8.91	0.00	45.54	4.17
44	45	2.440247	GCGCCAGGGCTTATTGGT	60.440	61.111	8.91	0.00	39.32	3.67
45	46	3.219198	GGCGCCAGGGCTTATTGG	61.219	66.667	24.80	0.00	39.32	3.16
61	62	2.285668	TTGCAGGGAGGAGGGAGG	60.286	66.667	0.00	0.00	0.00	4.30
62	63	1.920325	TGTTGCAGGGAGGAGGGAG	60.920	63.158	0.00	0.00	0.00	4.30
63	64	2.206900	TGTTGCAGGGAGGAGGGA	59.793	61.111	0.00	0.00	0.00	4.20
64	65	2.352805	GTGTTGCAGGGAGGAGGG	59.647	66.667	0.00	0.00	0.00	4.30
65	66	2.190488	GAGGTGTTGCAGGGAGGAGG	62.190	65.000	0.00	0.00	0.00	4.30
66	67	1.298014	GAGGTGTTGCAGGGAGGAG	59.702	63.158	0.00	0.00	0.00	3.69
67	68	2.224159	GGAGGTGTTGCAGGGAGGA	61.224	63.158	0.00	0.00	0.00	3.71
68	69	2.190488	GAGGAGGTGTTGCAGGGAGG	62.190	65.000	0.00	0.00	0.00	4.30
69	70	1.298014	GAGGAGGTGTTGCAGGGAG	59.702	63.158	0.00	0.00	0.00	4.30
70	71	2.224159	GGAGGAGGTGTTGCAGGGA	61.224	63.158	0.00	0.00	0.00	4.20
71	72	2.190488	GAGGAGGAGGTGTTGCAGGG	62.190	65.000	0.00	0.00	0.00	4.45
72	73	1.298014	GAGGAGGAGGTGTTGCAGG	59.702	63.158	0.00	0.00	0.00	4.85
73	74	1.197430	AGGAGGAGGAGGTGTTGCAG	61.197	60.000	0.00	0.00	0.00	4.41
74	75	1.152030	AGGAGGAGGAGGTGTTGCA	60.152	57.895	0.00	0.00	0.00	4.08
75	76	1.599576	GAGGAGGAGGAGGTGTTGC	59.400	63.158	0.00	0.00	0.00	4.17
76	77	1.608717	CGGAGGAGGAGGAGGTGTTG	61.609	65.000	0.00	0.00	0.00	3.33
77	78	1.305381	CGGAGGAGGAGGAGGTGTT	60.305	63.158	0.00	0.00	0.00	3.32
78	79	2.360980	CGGAGGAGGAGGAGGTGT	59.639	66.667	0.00	0.00	0.00	4.16
91	92	0.454600	TCGCTAAGCAACTACCGGAG	59.545	55.000	9.46	3.52	0.00	4.63
92	93	0.889994	TTCGCTAAGCAACTACCGGA	59.110	50.000	9.46	0.00	0.00	5.14
93	94	1.278238	CTTCGCTAAGCAACTACCGG	58.722	55.000	0.00	0.00	0.00	5.28
103	104	2.892425	CGGCAGGGCTTCGCTAAG	60.892	66.667	0.00	0.00	35.68	2.18
104	105	4.467084	CCGGCAGGGCTTCGCTAA	62.467	66.667	0.00	0.00	0.00	3.09
108	109	4.394712	AACTCCGGCAGGGCTTCG	62.395	66.667	2.05	0.00	38.33	3.79
109	110	2.436824	GAACTCCGGCAGGGCTTC	60.437	66.667	2.05	0.40	38.33	3.86
110	111	2.930562	AGAACTCCGGCAGGGCTT	60.931	61.111	2.05	0.00	38.33	4.35
111	112	3.710722	CAGAACTCCGGCAGGGCT	61.711	66.667	2.05	0.00	38.33	5.19
113	114	3.710722	AGCAGAACTCCGGCAGGG	61.711	66.667	2.05	0.00	38.49	4.45
114	115	2.435586	CAGCAGAACTCCGGCAGG	60.436	66.667	0.00	0.00	38.49	4.85
115	116	3.123620	GCAGCAGAACTCCGGCAG	61.124	66.667	0.00	0.00	38.49	4.85
116	117	3.258228	ATGCAGCAGAACTCCGGCA	62.258	57.895	0.00	0.00	38.49	5.69
117	118	2.437359	ATGCAGCAGAACTCCGGC	60.437	61.111	0.00	0.00	36.16	6.13
118	119	1.817099	GGATGCAGCAGAACTCCGG	60.817	63.158	3.51	0.00	0.00	5.14
119	120	1.078918	TGGATGCAGCAGAACTCCG	60.079	57.895	3.51	0.00	0.00	4.63
120	121	1.028868	GGTGGATGCAGCAGAACTCC	61.029	60.000	11.89	3.24	0.00	3.85
121	122	0.321919	TGGTGGATGCAGCAGAACTC	60.322	55.000	15.61	0.00	0.00	3.01
122	123	0.607489	GTGGTGGATGCAGCAGAACT	60.607	55.000	20.01	0.00	32.88	3.01
123	124	1.589716	GGTGGTGGATGCAGCAGAAC	61.590	60.000	20.01	8.10	32.88	3.01
124	125	1.303561	GGTGGTGGATGCAGCAGAA	60.304	57.895	20.01	0.00	32.88	3.02
125	126	2.352422	GGTGGTGGATGCAGCAGA	59.648	61.111	20.01	0.00	32.88	4.26
126	127	2.034532	TGGTGGTGGATGCAGCAG	59.965	61.111	20.01	0.00	32.88	4.24
127	128	2.282391	GTGGTGGTGGATGCAGCA	60.282	61.111	15.61	15.61	0.00	4.41
128	129	3.434319	CGTGGTGGTGGATGCAGC	61.434	66.667	9.74	9.74	0.00	5.25
129	130	3.434319	GCGTGGTGGTGGATGCAG	61.434	66.667	0.00	0.00	0.00	4.41
132	133	4.697756	ACGGCGTGGTGGTGGATG	62.698	66.667	13.76	0.00	0.00	3.51
133	134	4.388499	GACGGCGTGGTGGTGGAT	62.388	66.667	21.19	0.00	0.00	3.41
146	147	2.842394	AAGATCCAGCAGCACGACGG	62.842	60.000	0.00	0.00	0.00	4.79
147	148	1.416813	GAAGATCCAGCAGCACGACG	61.417	60.000	0.00	0.00	0.00	5.12
148	149	0.390340	TGAAGATCCAGCAGCACGAC	60.390	55.000	0.00	0.00	0.00	4.34
149	150	0.538584	ATGAAGATCCAGCAGCACGA	59.461	50.000	0.00	0.00	0.00	4.35
150	151	0.935898	GATGAAGATCCAGCAGCACG	59.064	55.000	0.00	0.00	0.00	5.34
151	152	2.034104	TGATGAAGATCCAGCAGCAC	57.966	50.000	0.00	0.00	0.00	4.40
152	153	2.362736	GTTGATGAAGATCCAGCAGCA	58.637	47.619	0.00	0.00	34.53	4.41
153	154	1.674962	GGTTGATGAAGATCCAGCAGC	59.325	52.381	0.00	0.00	33.72	5.25
154	155	3.118334	AGAGGTTGATGAAGATCCAGCAG	60.118	47.826	0.00	0.00	33.72	4.24
155	156	2.842496	AGAGGTTGATGAAGATCCAGCA	59.158	45.455	0.00	0.00	0.00	4.41
156	157	3.465871	GAGAGGTTGATGAAGATCCAGC	58.534	50.000	0.00	0.00	0.00	4.85
157	158	3.710677	AGGAGAGGTTGATGAAGATCCAG	59.289	47.826	0.00	0.00	0.00	3.86
158	159	3.729108	AGGAGAGGTTGATGAAGATCCA	58.271	45.455	0.00	0.00	0.00	3.41
159	160	4.444164	GGAAGGAGAGGTTGATGAAGATCC	60.444	50.000	0.00	0.00	0.00	3.36
160	161	4.444164	GGGAAGGAGAGGTTGATGAAGATC	60.444	50.000	0.00	0.00	0.00	2.75
161	162	3.457749	GGGAAGGAGAGGTTGATGAAGAT	59.542	47.826	0.00	0.00	0.00	2.40
162	163	2.840651	GGGAAGGAGAGGTTGATGAAGA	59.159	50.000	0.00	0.00	0.00	2.87
163	164	2.092699	GGGGAAGGAGAGGTTGATGAAG	60.093	54.545	0.00	0.00	0.00	3.02
164	165	1.916181	GGGGAAGGAGAGGTTGATGAA	59.084	52.381	0.00	0.00	0.00	2.57
165	166	1.584724	GGGGAAGGAGAGGTTGATGA	58.415	55.000	0.00	0.00	0.00	2.92
166	167	0.548510	GGGGGAAGGAGAGGTTGATG	59.451	60.000	0.00	0.00	0.00	3.07
167	168	0.423544	AGGGGGAAGGAGAGGTTGAT	59.576	55.000	0.00	0.00	0.00	2.57
168	169	0.196118	AAGGGGGAAGGAGAGGTTGA	59.804	55.000	0.00	0.00	0.00	3.18
169	170	0.329596	CAAGGGGGAAGGAGAGGTTG	59.670	60.000	0.00	0.00	0.00	3.77
170	171	1.501654	GCAAGGGGGAAGGAGAGGTT	61.502	60.000	0.00	0.00	0.00	3.50
171	172	1.925972	GCAAGGGGGAAGGAGAGGT	60.926	63.158	0.00	0.00	0.00	3.85
172	173	1.617839	AGCAAGGGGGAAGGAGAGG	60.618	63.158	0.00	0.00	0.00	3.69
173	174	1.606531	CAGCAAGGGGGAAGGAGAG	59.393	63.158	0.00	0.00	0.00	3.20
174	175	1.925455	CCAGCAAGGGGGAAGGAGA	60.925	63.158	0.00	0.00	0.00	3.71
175	176	1.284841	ATCCAGCAAGGGGGAAGGAG	61.285	60.000	0.00	0.00	36.62	3.69
176	177	1.230281	ATCCAGCAAGGGGGAAGGA	60.230	57.895	0.00	0.00	36.62	3.36
177	178	1.228510	GATCCAGCAAGGGGGAAGG	59.771	63.158	0.00	0.00	36.62	3.46
178	179	0.332632	TTGATCCAGCAAGGGGGAAG	59.667	55.000	0.00	0.00	36.62	3.46
179	180	0.332632	CTTGATCCAGCAAGGGGGAA	59.667	55.000	0.00	0.00	41.15	3.97
180	181	0.549902	TCTTGATCCAGCAAGGGGGA	60.550	55.000	4.79	0.00	44.14	4.81
181	182	0.332632	TTCTTGATCCAGCAAGGGGG	59.667	55.000	4.79	0.00	44.14	5.40
182	183	1.684248	CCTTCTTGATCCAGCAAGGGG	60.684	57.143	4.79	4.42	44.14	4.79
183	184	1.283029	TCCTTCTTGATCCAGCAAGGG	59.717	52.381	17.39	0.00	44.14	3.95
184	185	2.641305	CTCCTTCTTGATCCAGCAAGG	58.359	52.381	14.03	14.03	44.14	3.61
185	186	2.238144	TCCTCCTTCTTGATCCAGCAAG	59.762	50.000	0.00	0.00	45.10	4.01
186	187	2.238144	CTCCTCCTTCTTGATCCAGCAA	59.762	50.000	0.00	0.00	0.00	3.91
187	188	1.836166	CTCCTCCTTCTTGATCCAGCA	59.164	52.381	0.00	0.00	0.00	4.41
188	189	2.114616	TCTCCTCCTTCTTGATCCAGC	58.885	52.381	0.00	0.00	0.00	4.85
189	190	2.100584	CGTCTCCTCCTTCTTGATCCAG	59.899	54.545	0.00	0.00	0.00	3.86
190	191	2.103373	CGTCTCCTCCTTCTTGATCCA	58.897	52.381	0.00	0.00	0.00	3.41
191	192	2.100087	GACGTCTCCTCCTTCTTGATCC	59.900	54.545	8.70	0.00	0.00	3.36
192	193	2.755655	TGACGTCTCCTCCTTCTTGATC	59.244	50.000	17.92	0.00	0.00	2.92
193	194	2.808919	TGACGTCTCCTCCTTCTTGAT	58.191	47.619	17.92	0.00	0.00	2.57
194	195	2.287977	TGACGTCTCCTCCTTCTTGA	57.712	50.000	17.92	0.00	0.00	3.02
195	196	2.159170	GGATGACGTCTCCTCCTTCTTG	60.159	54.545	17.92	0.00	30.37	3.02
196	197	2.104170	GGATGACGTCTCCTCCTTCTT	58.896	52.381	17.92	0.00	30.37	2.52
197	198	1.770294	GGATGACGTCTCCTCCTTCT	58.230	55.000	17.92	0.00	30.37	2.85
198	199	0.382515	CGGATGACGTCTCCTCCTTC	59.617	60.000	23.06	8.69	37.93	3.46
199	200	1.668101	GCGGATGACGTCTCCTCCTT	61.668	60.000	23.06	1.55	46.52	3.36
200	201	2.122167	GCGGATGACGTCTCCTCCT	61.122	63.158	23.06	2.85	46.52	3.69
201	202	2.065906	GAGCGGATGACGTCTCCTCC	62.066	65.000	23.06	20.27	46.52	4.30
202	203	1.357334	GAGCGGATGACGTCTCCTC	59.643	63.158	23.06	18.28	46.52	3.71
203	204	3.515611	GAGCGGATGACGTCTCCT	58.484	61.111	23.06	11.70	46.52	3.69
205	206	1.434622	TACGGAGCGGATGACGTCTC	61.435	60.000	17.92	11.34	46.52	3.36
206	207	1.450848	TACGGAGCGGATGACGTCT	60.451	57.895	17.92	1.84	46.52	4.18
207	208	1.298190	GTACGGAGCGGATGACGTC	60.298	63.158	9.11	9.11	46.52	4.34
208	209	2.796651	GTACGGAGCGGATGACGT	59.203	61.111	0.00	0.00	46.52	4.34
210	211	1.585521	CACGTACGGAGCGGATGAC	60.586	63.158	21.06	0.00	30.35	3.06
211	212	2.042259	ACACGTACGGAGCGGATGA	61.042	57.895	21.06	0.00	30.35	2.92
212	213	1.872234	CACACGTACGGAGCGGATG	60.872	63.158	21.06	9.18	32.28	3.51
213	214	1.870055	AACACACGTACGGAGCGGAT	61.870	55.000	21.06	0.00	0.00	4.18
214	215	2.554636	AACACACGTACGGAGCGGA	61.555	57.895	21.06	0.00	0.00	5.54
215	216	2.049802	AACACACGTACGGAGCGG	60.050	61.111	21.06	9.93	0.00	5.52
216	217	0.935831	TTCAACACACGTACGGAGCG	60.936	55.000	21.06	8.27	0.00	5.03
217	218	0.505655	GTTCAACACACGTACGGAGC	59.494	55.000	21.06	4.18	0.00	4.70
218	219	0.774098	CGTTCAACACACGTACGGAG	59.226	55.000	21.06	14.04	32.80	4.63
219	220	1.208009	GCGTTCAACACACGTACGGA	61.208	55.000	21.06	2.65	39.92	4.69
220	221	1.199859	GCGTTCAACACACGTACGG	59.800	57.895	21.06	11.05	39.92	4.02
221	222	1.155158	CGCGTTCAACACACGTACG	60.155	57.895	15.01	15.01	39.92	3.67
222	223	0.571661	TTCGCGTTCAACACACGTAC	59.428	50.000	5.77	0.00	39.92	3.67
223	224	0.847670	CTTCGCGTTCAACACACGTA	59.152	50.000	5.77	0.00	39.92	3.57
224	225	1.634225	CTTCGCGTTCAACACACGT	59.366	52.632	5.77	0.00	39.92	4.49
225	226	1.083657	CCTTCGCGTTCAACACACG	60.084	57.895	5.77	0.00	40.75	4.49
226	227	0.315869	CACCTTCGCGTTCAACACAC	60.316	55.000	5.77	0.00	0.00	3.82
227	228	2.010670	CACCTTCGCGTTCAACACA	58.989	52.632	5.77	0.00	0.00	3.72
228	229	1.368850	GCACCTTCGCGTTCAACAC	60.369	57.895	5.77	0.00	0.00	3.32
229	230	1.522806	AGCACCTTCGCGTTCAACA	60.523	52.632	5.77	0.00	36.85	3.33
230	231	1.082756	CAGCACCTTCGCGTTCAAC	60.083	57.895	5.77	0.00	36.85	3.18
231	232	1.495584	GACAGCACCTTCGCGTTCAA	61.496	55.000	5.77	0.00	36.85	2.69
232	233	1.954146	GACAGCACCTTCGCGTTCA	60.954	57.895	5.77	0.00	36.85	3.18
233	234	2.668280	GGACAGCACCTTCGCGTTC	61.668	63.158	5.77	0.00	36.85	3.95
234	235	2.665185	GGACAGCACCTTCGCGTT	60.665	61.111	5.77	0.00	36.85	4.84
237	238	2.665185	AACGGACAGCACCTTCGC	60.665	61.111	0.00	0.00	0.00	4.70
238	239	2.372690	CGAACGGACAGCACCTTCG	61.373	63.158	0.00	0.00	35.83	3.79
239	240	2.027625	CCGAACGGACAGCACCTTC	61.028	63.158	7.53	0.00	37.50	3.46
240	241	2.030562	CCGAACGGACAGCACCTT	59.969	61.111	7.53	0.00	37.50	3.50
241	242	4.681978	GCCGAACGGACAGCACCT	62.682	66.667	17.63	0.00	37.50	4.00
242	243	4.980805	TGCCGAACGGACAGCACC	62.981	66.667	17.63	0.00	37.50	5.01
244	245	2.486636	CTAGTGCCGAACGGACAGCA	62.487	60.000	17.63	4.68	37.50	4.41
245	246	1.805945	CTAGTGCCGAACGGACAGC	60.806	63.158	17.63	1.97	37.50	4.40
246	247	1.153823	CCTAGTGCCGAACGGACAG	60.154	63.158	17.63	7.06	37.50	3.51
247	248	1.870055	GACCTAGTGCCGAACGGACA	61.870	60.000	17.63	11.22	37.50	4.02
248	249	1.153881	GACCTAGTGCCGAACGGAC	60.154	63.158	17.63	11.59	37.50	4.79
249	250	0.968901	ATGACCTAGTGCCGAACGGA	60.969	55.000	17.63	0.00	37.50	4.69
250	251	0.527817	GATGACCTAGTGCCGAACGG	60.528	60.000	9.00	9.00	38.57	4.44
251	252	0.866061	CGATGACCTAGTGCCGAACG	60.866	60.000	0.00	0.00	0.00	3.95
252	253	0.527817	CCGATGACCTAGTGCCGAAC	60.528	60.000	0.00	0.00	0.00	3.95
253	254	0.968901	ACCGATGACCTAGTGCCGAA	60.969	55.000	0.00	0.00	0.00	4.30
254	255	1.379443	ACCGATGACCTAGTGCCGA	60.379	57.895	0.00	0.00	0.00	5.54
255	256	1.226974	CACCGATGACCTAGTGCCG	60.227	63.158	0.00	0.00	0.00	5.69
256	257	0.753262	ATCACCGATGACCTAGTGCC	59.247	55.000	0.00	0.00	37.79	5.01
257	258	1.683917	AGATCACCGATGACCTAGTGC	59.316	52.381	0.00	0.00	37.79	4.40
258	259	2.952310	TCAGATCACCGATGACCTAGTG	59.048	50.000	0.00	0.00	37.79	2.74
259	260	3.298686	TCAGATCACCGATGACCTAGT	57.701	47.619	0.00	0.00	37.79	2.57
260	261	4.862902	ATTCAGATCACCGATGACCTAG	57.137	45.455	0.00	0.00	37.79	3.02
261	262	5.278315	CGTAATTCAGATCACCGATGACCTA	60.278	44.000	0.00	0.00	37.79	3.08
262	263	4.499865	CGTAATTCAGATCACCGATGACCT	60.500	45.833	0.00	0.00	37.79	3.85
263	264	3.736252	CGTAATTCAGATCACCGATGACC	59.264	47.826	0.00	0.00	37.79	4.02
264	265	3.736252	CCGTAATTCAGATCACCGATGAC	59.264	47.826	0.00	0.00	37.79	3.06
265	266	3.798889	GCCGTAATTCAGATCACCGATGA	60.799	47.826	0.00	0.00	39.83	2.92
266	267	2.476619	GCCGTAATTCAGATCACCGATG	59.523	50.000	0.00	0.00	0.00	3.84
267	268	2.755650	GCCGTAATTCAGATCACCGAT	58.244	47.619	0.00	0.00	0.00	4.18
268	269	1.535226	CGCCGTAATTCAGATCACCGA	60.535	52.381	0.00	0.00	0.00	4.69
269	270	0.852777	CGCCGTAATTCAGATCACCG	59.147	55.000	0.00	0.00	0.00	4.94
270	271	2.128035	CTCGCCGTAATTCAGATCACC	58.872	52.381	0.00	0.00	0.00	4.02
271	272	2.810650	ACTCGCCGTAATTCAGATCAC	58.189	47.619	0.00	0.00	0.00	3.06
272	273	3.547413	CGTACTCGCCGTAATTCAGATCA	60.547	47.826	0.00	0.00	0.00	2.92
273	274	2.971915	CGTACTCGCCGTAATTCAGATC	59.028	50.000	0.00	0.00	0.00	2.75
274	275	2.615447	TCGTACTCGCCGTAATTCAGAT	59.385	45.455	0.00	0.00	36.96	2.90
275	276	2.009051	TCGTACTCGCCGTAATTCAGA	58.991	47.619	0.00	0.00	36.96	3.27
276	277	2.107178	GTCGTACTCGCCGTAATTCAG	58.893	52.381	0.00	0.00	36.96	3.02
277	278	1.739466	AGTCGTACTCGCCGTAATTCA	59.261	47.619	0.00	0.00	36.96	2.57
278	279	2.370515	GAGTCGTACTCGCCGTAATTC	58.629	52.381	0.00	0.00	35.28	2.17
279	280	1.064654	GGAGTCGTACTCGCCGTAATT	59.935	52.381	8.33	0.00	45.96	1.40
280	281	0.659957	GGAGTCGTACTCGCCGTAAT	59.340	55.000	8.33	0.00	45.96	1.89
281	282	0.673333	TGGAGTCGTACTCGCCGTAA	60.673	55.000	8.33	0.00	45.96	3.18
282	283	0.462581	ATGGAGTCGTACTCGCCGTA	60.463	55.000	8.33	0.00	45.96	4.02
283	284	1.712977	GATGGAGTCGTACTCGCCGT	61.713	60.000	8.33	3.07	45.96	5.68
284	285	1.009900	GATGGAGTCGTACTCGCCG	60.010	63.158	8.33	0.00	45.96	6.46
285	286	0.454600	TTGATGGAGTCGTACTCGCC	59.545	55.000	8.33	0.00	45.96	5.54
286	287	1.546834	GTTGATGGAGTCGTACTCGC	58.453	55.000	8.33	3.96	45.96	5.03
287	288	1.202268	GGGTTGATGGAGTCGTACTCG	60.202	57.143	8.33	0.00	45.96	4.18
288	289	1.136500	GGGGTTGATGGAGTCGTACTC	59.864	57.143	6.50	6.50	44.32	2.59
289	290	1.192428	GGGGTTGATGGAGTCGTACT	58.808	55.000	0.00	0.00	0.00	2.73
290	291	0.179119	CGGGGTTGATGGAGTCGTAC	60.179	60.000	0.00	0.00	0.00	3.67
291	292	0.612732	ACGGGGTTGATGGAGTCGTA	60.613	55.000	0.00	0.00	0.00	3.43
292	293	1.477685	AACGGGGTTGATGGAGTCGT	61.478	55.000	0.00	0.00	0.00	4.34
293	294	0.739813	GAACGGGGTTGATGGAGTCG	60.740	60.000	0.00	0.00	0.00	4.18
294	295	0.392595	GGAACGGGGTTGATGGAGTC	60.393	60.000	0.00	0.00	0.00	3.36
295	296	1.131303	TGGAACGGGGTTGATGGAGT	61.131	55.000	0.00	0.00	0.00	3.85
296	297	0.255890	ATGGAACGGGGTTGATGGAG	59.744	55.000	0.00	0.00	0.00	3.86
297	298	0.701731	AATGGAACGGGGTTGATGGA	59.298	50.000	0.00	0.00	0.00	3.41
298	299	0.817013	CAATGGAACGGGGTTGATGG	59.183	55.000	0.00	0.00	0.00	3.51
299	300	1.832883	TCAATGGAACGGGGTTGATG	58.167	50.000	0.00	0.00	0.00	3.07
300	301	2.167662	GTTCAATGGAACGGGGTTGAT	58.832	47.619	0.00	0.00	43.54	2.57
301	302	1.611519	GTTCAATGGAACGGGGTTGA	58.388	50.000	0.00	0.00	43.54	3.18
327	328	2.892784	ACCCTTGTAGATCGCTAAGC	57.107	50.000	0.00	0.00	0.00	3.09
328	329	5.455056	ACATACCCTTGTAGATCGCTAAG	57.545	43.478	0.00	0.00	0.00	2.18
337	338	5.303078	AGAGTGCATCTACATACCCTTGTAG	59.697	44.000	5.47	5.47	46.85	2.74
338	339	5.208890	AGAGTGCATCTACATACCCTTGTA	58.791	41.667	0.00	0.00	36.10	2.41
339	340	4.033709	AGAGTGCATCTACATACCCTTGT	58.966	43.478	0.00	0.00	36.10	3.16
340	341	4.502259	GGAGAGTGCATCTACATACCCTTG	60.502	50.000	0.00	0.00	38.94	3.61
341	342	3.643792	GGAGAGTGCATCTACATACCCTT	59.356	47.826	0.00	0.00	38.94	3.95
342	343	3.116939	AGGAGAGTGCATCTACATACCCT	60.117	47.826	9.98	4.47	42.01	4.34
343	344	3.235200	AGGAGAGTGCATCTACATACCC	58.765	50.000	9.98	2.71	42.01	3.69
344	345	4.262249	GGAAGGAGAGTGCATCTACATACC	60.262	50.000	9.98	6.83	42.01	2.73
345	346	4.262249	GGGAAGGAGAGTGCATCTACATAC	60.262	50.000	9.98	0.82	42.01	2.39
346	347	3.898123	GGGAAGGAGAGTGCATCTACATA	59.102	47.826	9.98	0.00	42.01	2.29
347	348	2.703007	GGGAAGGAGAGTGCATCTACAT	59.297	50.000	9.98	0.00	42.01	2.29
348	349	2.111384	GGGAAGGAGAGTGCATCTACA	58.889	52.381	9.98	0.00	42.01	2.74
349	350	1.414550	GGGGAAGGAGAGTGCATCTAC	59.585	57.143	0.00	0.00	38.84	2.59
350	351	1.292242	AGGGGAAGGAGAGTGCATCTA	59.708	52.381	0.00	0.00	38.84	1.98
351	352	0.043940	AGGGGAAGGAGAGTGCATCT	59.956	55.000	0.00	0.00	42.61	2.90
352	353	0.467804	GAGGGGAAGGAGAGTGCATC	59.532	60.000	0.00	0.00	0.00	3.91
353	354	1.333636	CGAGGGGAAGGAGAGTGCAT	61.334	60.000	0.00	0.00	0.00	3.96
354	355	1.984570	CGAGGGGAAGGAGAGTGCA	60.985	63.158	0.00	0.00	0.00	4.57
355	356	1.545706	AACGAGGGGAAGGAGAGTGC	61.546	60.000	0.00	0.00	0.00	4.40
356	357	0.247736	CAACGAGGGGAAGGAGAGTG	59.752	60.000	0.00	0.00	0.00	3.51
357	358	1.545706	GCAACGAGGGGAAGGAGAGT	61.546	60.000	0.00	0.00	0.00	3.24
358	359	1.219393	GCAACGAGGGGAAGGAGAG	59.781	63.158	0.00	0.00	0.00	3.20
359	360	1.229209	AGCAACGAGGGGAAGGAGA	60.229	57.895	0.00	0.00	0.00	3.71
360	361	1.078848	CAGCAACGAGGGGAAGGAG	60.079	63.158	0.00	0.00	0.00	3.69
361	362	2.592993	CCAGCAACGAGGGGAAGGA	61.593	63.158	0.00	0.00	0.00	3.36
362	363	2.045926	CCAGCAACGAGGGGAAGG	60.046	66.667	0.00	0.00	0.00	3.46
363	364	0.537371	AAACCAGCAACGAGGGGAAG	60.537	55.000	0.00	0.00	0.00	3.46
364	365	0.536460	GAAACCAGCAACGAGGGGAA	60.536	55.000	0.00	0.00	0.00	3.97
365	366	1.072505	GAAACCAGCAACGAGGGGA	59.927	57.895	0.00	0.00	0.00	4.81
366	367	0.955919	GAGAAACCAGCAACGAGGGG	60.956	60.000	0.00	0.00	0.00	4.79
367	368	0.955919	GGAGAAACCAGCAACGAGGG	60.956	60.000	0.00	0.00	38.79	4.30
368	369	0.250295	TGGAGAAACCAGCAACGAGG	60.250	55.000	0.00	0.00	44.64	4.63
369	370	3.305709	TGGAGAAACCAGCAACGAG	57.694	52.632	0.00	0.00	44.64	4.18
373	374	7.071698	AAGATCTATCTATGGAGAAACCAGCAA	59.928	37.037	0.00	0.00	43.76	3.91
374	375	6.556495	AAGATCTATCTATGGAGAAACCAGCA	59.444	38.462	0.00	0.00	43.76	4.41
375	376	6.873076	CAAGATCTATCTATGGAGAAACCAGC	59.127	42.308	0.00	0.00	43.76	4.85
376	377	7.016072	ACCAAGATCTATCTATGGAGAAACCAG	59.984	40.741	15.80	0.00	43.76	4.00
377	378	6.846505	ACCAAGATCTATCTATGGAGAAACCA	59.153	38.462	15.80	0.00	44.28	3.67
378	379	7.015682	TCACCAAGATCTATCTATGGAGAAACC	59.984	40.741	15.80	0.00	37.92	3.27
379	380	7.870445	GTCACCAAGATCTATCTATGGAGAAAC	59.130	40.741	15.80	5.75	36.96	2.78
380	381	7.565029	TGTCACCAAGATCTATCTATGGAGAAA	59.435	37.037	15.80	6.93	36.96	2.52
381	382	7.014711	GTGTCACCAAGATCTATCTATGGAGAA	59.985	40.741	15.80	3.96	36.96	2.87
382	383	6.491745	GTGTCACCAAGATCTATCTATGGAGA	59.508	42.308	15.80	10.97	37.92	3.71
383	384	6.569418	CGTGTCACCAAGATCTATCTATGGAG	60.569	46.154	15.80	8.98	37.92	3.86
384	385	5.241728	CGTGTCACCAAGATCTATCTATGGA	59.758	44.000	15.80	0.00	37.92	3.41
385	386	5.010112	ACGTGTCACCAAGATCTATCTATGG	59.990	44.000	8.57	8.57	39.18	2.74
386	387	6.078202	ACGTGTCACCAAGATCTATCTATG	57.922	41.667	0.00	0.00	35.76	2.23
387	388	6.431543	CCTACGTGTCACCAAGATCTATCTAT	59.568	42.308	0.00	0.00	35.76	1.98
388	389	5.763698	CCTACGTGTCACCAAGATCTATCTA	59.236	44.000	0.00	0.00	35.76	1.98
389	390	4.580995	CCTACGTGTCACCAAGATCTATCT	59.419	45.833	0.00	0.00	39.22	1.98
390	391	4.579340	TCCTACGTGTCACCAAGATCTATC	59.421	45.833	0.00	0.00	0.00	2.08
391	392	4.533815	TCCTACGTGTCACCAAGATCTAT	58.466	43.478	0.00	0.00	0.00	1.98
392	393	3.959293	TCCTACGTGTCACCAAGATCTA	58.041	45.455	0.00	0.00	0.00	1.98
393	394	2.803956	TCCTACGTGTCACCAAGATCT	58.196	47.619	0.00	0.00	0.00	2.75
394	395	3.587797	TTCCTACGTGTCACCAAGATC	57.412	47.619	0.00	0.00	0.00	2.75
395	396	4.553330	ATTTCCTACGTGTCACCAAGAT	57.447	40.909	0.00	0.00	0.00	2.40
396	397	4.345859	AATTTCCTACGTGTCACCAAGA	57.654	40.909	0.00	0.00	0.00	3.02
397	398	5.432885	AAAATTTCCTACGTGTCACCAAG	57.567	39.130	0.00	0.00	0.00	3.61
398	399	5.357314	TCAAAAATTTCCTACGTGTCACCAA	59.643	36.000	0.00	0.00	0.00	3.67
399	400	4.882427	TCAAAAATTTCCTACGTGTCACCA	59.118	37.500	0.00	0.00	0.00	4.17
400	401	5.427036	TCAAAAATTTCCTACGTGTCACC	57.573	39.130	0.00	0.00	0.00	4.02
401	402	7.924103	AATTCAAAAATTTCCTACGTGTCAC	57.076	32.000	0.00	0.00	30.79	3.67
404	405	8.921670	GCATAAATTCAAAAATTTCCTACGTGT	58.078	29.630	0.00	0.00	42.66	4.49
405	406	9.139174	AGCATAAATTCAAAAATTTCCTACGTG	57.861	29.630	0.00	0.00	42.66	4.49
410	411	9.705290	AACGTAGCATAAATTCAAAAATTTCCT	57.295	25.926	0.00	0.16	42.66	3.36
411	412	9.952341	GAACGTAGCATAAATTCAAAAATTTCC	57.048	29.630	0.00	0.00	42.66	3.13
412	413	9.952341	GGAACGTAGCATAAATTCAAAAATTTC	57.048	29.630	0.00	0.00	42.66	2.17
413	414	8.931775	GGGAACGTAGCATAAATTCAAAAATTT	58.068	29.630	0.00	2.14	45.02	1.82
414	415	7.547722	GGGGAACGTAGCATAAATTCAAAAATT	59.452	33.333	0.00	0.00	36.64	1.82
415	416	7.039270	GGGGAACGTAGCATAAATTCAAAAAT	58.961	34.615	0.00	0.00	0.00	1.82
416	417	6.015350	TGGGGAACGTAGCATAAATTCAAAAA	60.015	34.615	0.00	0.00	0.00	1.94
417	418	5.477291	TGGGGAACGTAGCATAAATTCAAAA	59.523	36.000	0.00	0.00	0.00	2.44
418	419	5.010933	TGGGGAACGTAGCATAAATTCAAA	58.989	37.500	0.00	0.00	0.00	2.69
419	420	4.590918	TGGGGAACGTAGCATAAATTCAA	58.409	39.130	0.00	0.00	0.00	2.69
420	421	4.223556	TGGGGAACGTAGCATAAATTCA	57.776	40.909	0.00	0.00	0.00	2.57
421	422	4.396790	TGTTGGGGAACGTAGCATAAATTC	59.603	41.667	0.00	0.00	0.00	2.17
422	423	4.337145	TGTTGGGGAACGTAGCATAAATT	58.663	39.130	0.00	0.00	0.00	1.82
423	424	3.958018	TGTTGGGGAACGTAGCATAAAT	58.042	40.909	0.00	0.00	0.00	1.40
424	425	3.420300	TGTTGGGGAACGTAGCATAAA	57.580	42.857	0.00	0.00	0.00	1.40
425	426	3.420300	TTGTTGGGGAACGTAGCATAA	57.580	42.857	0.00	0.00	0.00	1.90
426	427	3.637911	ATTGTTGGGGAACGTAGCATA	57.362	42.857	0.00	0.00	0.00	3.14
427	428	2.507407	ATTGTTGGGGAACGTAGCAT	57.493	45.000	0.00	0.00	0.00	3.79
428	429	3.637911	ATATTGTTGGGGAACGTAGCA	57.362	42.857	0.00	0.00	0.00	3.49
429	430	5.873164	CCTATATATTGTTGGGGAACGTAGC	59.127	44.000	0.00	0.00	0.00	3.58
430	431	5.873164	GCCTATATATTGTTGGGGAACGTAG	59.127	44.000	0.00	0.00	0.00	3.51
431	432	5.280113	GGCCTATATATTGTTGGGGAACGTA	60.280	44.000	0.00	0.00	0.00	3.57
432	433	4.506095	GGCCTATATATTGTTGGGGAACGT	60.506	45.833	0.00	0.00	0.00	3.99
433	434	4.007659	GGCCTATATATTGTTGGGGAACG	58.992	47.826	0.00	0.00	0.00	3.95
434	435	4.007659	CGGCCTATATATTGTTGGGGAAC	58.992	47.826	0.00	0.00	0.00	3.62
435	436	3.911260	TCGGCCTATATATTGTTGGGGAA	59.089	43.478	0.00	0.00	0.00	3.97
436	437	3.517901	CTCGGCCTATATATTGTTGGGGA	59.482	47.826	0.00	0.00	0.00	4.81
437	438	3.370527	CCTCGGCCTATATATTGTTGGGG	60.371	52.174	0.00	0.00	0.00	4.96
438	439	3.873910	CCTCGGCCTATATATTGTTGGG	58.126	50.000	0.00	0.00	0.00	4.12
439	440	3.270877	GCCTCGGCCTATATATTGTTGG	58.729	50.000	0.00	0.00	34.56	3.77
440	441	2.930040	CGCCTCGGCCTATATATTGTTG	59.070	50.000	0.00	0.00	37.98	3.33
441	442	2.677037	GCGCCTCGGCCTATATATTGTT	60.677	50.000	0.00	0.00	37.98	2.83
442	443	1.134788	GCGCCTCGGCCTATATATTGT	60.135	52.381	0.00	0.00	37.98	2.71
443	444	1.571919	GCGCCTCGGCCTATATATTG	58.428	55.000	0.00	0.00	37.98	1.90
470	471	0.029834	GTACACACGGTGACACTCGT	59.970	55.000	16.29	13.98	40.49	4.18
471	472	0.995234	CGTACACACGGTGACACTCG	60.995	60.000	16.29	9.91	44.59	4.18
472	473	2.792374	CGTACACACGGTGACACTC	58.208	57.895	16.29	0.68	44.59	3.51
490	491	4.899239	CTCCCTCGTCCGCCATGC	62.899	72.222	0.00	0.00	0.00	4.06
491	492	4.227134	CCTCCCTCGTCCGCCATG	62.227	72.222	0.00	0.00	0.00	3.66
519	520	4.394078	TGAAGACCGGACGACGCG	62.394	66.667	9.46	3.53	42.52	6.01
520	521	2.804090	GTGAAGACCGGACGACGC	60.804	66.667	9.46	4.75	42.52	5.19
521	522	1.442184	CAGTGAAGACCGGACGACG	60.442	63.158	9.46	0.00	43.80	5.12
522	523	1.733399	GCAGTGAAGACCGGACGAC	60.733	63.158	9.46	1.68	0.00	4.34
523	524	2.649034	GCAGTGAAGACCGGACGA	59.351	61.111	9.46	0.00	0.00	4.20
524	525	2.805353	CGCAGTGAAGACCGGACG	60.805	66.667	9.46	0.00	0.00	4.79
525	526	3.112709	GCGCAGTGAAGACCGGAC	61.113	66.667	9.46	0.10	0.00	4.79
526	527	4.373116	GGCGCAGTGAAGACCGGA	62.373	66.667	9.46	0.00	0.00	5.14
545	546	2.484062	GCCATTGATGCCTCACGGG	61.484	63.158	8.23	6.34	38.36	5.28
546	547	2.827051	CGCCATTGATGCCTCACGG	61.827	63.158	0.00	0.00	0.00	4.94
547	548	2.711311	CGCCATTGATGCCTCACG	59.289	61.111	0.00	0.00	0.00	4.35
548	549	1.731433	ATGCGCCATTGATGCCTCAC	61.731	55.000	4.18	0.00	0.00	3.51
549	550	1.454295	ATGCGCCATTGATGCCTCA	60.454	52.632	4.18	0.00	0.00	3.86
550	551	1.007734	CATGCGCCATTGATGCCTC	60.008	57.895	4.18	0.00	0.00	4.70
551	552	3.125607	CATGCGCCATTGATGCCT	58.874	55.556	4.18	0.00	0.00	4.75
552	553	2.660552	GCATGCGCCATTGATGCC	60.661	61.111	16.44	1.89	37.17	4.40
553	554	1.949133	CAGCATGCGCCATTGATGC	60.949	57.895	18.86	18.86	42.37	3.91
554	555	0.594028	GTCAGCATGCGCCATTGATG	60.594	55.000	13.01	9.53	39.83	3.07
555	556	1.731433	GGTCAGCATGCGCCATTGAT	61.731	55.000	13.01	0.00	39.83	2.57
556	557	2.409055	GGTCAGCATGCGCCATTGA	61.409	57.895	13.01	7.30	39.83	2.57
557	558	2.103538	GGTCAGCATGCGCCATTG	59.896	61.111	13.01	4.65	39.83	2.82
558	559	3.511595	CGGTCAGCATGCGCCATT	61.512	61.111	22.28	0.59	39.83	3.16
587	588	4.424566	AATGCCAAAGCTGCCGCG	62.425	61.111	0.00	0.00	42.32	6.46
588	589	2.567564	ATCAATGCCAAAGCTGCCGC	62.568	55.000	0.00	0.00	40.80	6.53
589	590	0.108520	AATCAATGCCAAAGCTGCCG	60.109	50.000	0.00	0.00	40.80	5.69
590	591	1.648504	GAATCAATGCCAAAGCTGCC	58.351	50.000	0.00	0.00	40.80	4.85
591	592	1.274596	CGAATCAATGCCAAAGCTGC	58.725	50.000	0.00	0.00	40.80	5.25
592	593	1.274596	GCGAATCAATGCCAAAGCTG	58.725	50.000	0.00	0.00	40.80	4.24
593	594	3.727419	GCGAATCAATGCCAAAGCT	57.273	47.368	0.00	0.00	40.80	3.74
600	601	4.612536	CCCGCGGCGAATCAATGC	62.613	66.667	25.92	0.00	0.00	3.56
601	602	1.987704	TTTCCCGCGGCGAATCAATG	61.988	55.000	25.92	2.11	0.00	2.82
602	603	1.747367	TTTCCCGCGGCGAATCAAT	60.747	52.632	25.92	0.00	0.00	2.57
603	604	2.358860	TTTCCCGCGGCGAATCAA	60.359	55.556	25.92	7.35	0.00	2.57
604	605	3.122323	GTTTCCCGCGGCGAATCA	61.122	61.111	25.92	8.08	0.00	2.57
605	606	2.577763	CTTGTTTCCCGCGGCGAATC	62.578	60.000	25.92	21.66	0.00	2.52
606	607	2.670251	TTGTTTCCCGCGGCGAAT	60.670	55.556	25.92	0.00	0.00	3.34
607	608	3.350612	CTTGTTTCCCGCGGCGAA	61.351	61.111	25.92	21.49	0.00	4.70
610	611	4.038080	CACCTTGTTTCCCGCGGC	62.038	66.667	22.85	6.58	0.00	6.53
611	612	1.674322	ATCACCTTGTTTCCCGCGG	60.674	57.895	21.04	21.04	0.00	6.46
612	613	1.501741	CATCACCTTGTTTCCCGCG	59.498	57.895	0.00	0.00	0.00	6.46
613	614	1.212751	GCATCACCTTGTTTCCCGC	59.787	57.895	0.00	0.00	0.00	6.13
614	615	1.501741	CGCATCACCTTGTTTCCCG	59.498	57.895	0.00	0.00	0.00	5.14
615	616	0.608035	TCCGCATCACCTTGTTTCCC	60.608	55.000	0.00	0.00	0.00	3.97
616	617	0.521735	GTCCGCATCACCTTGTTTCC	59.478	55.000	0.00	0.00	0.00	3.13
617	618	0.165944	CGTCCGCATCACCTTGTTTC	59.834	55.000	0.00	0.00	0.00	2.78
618	619	0.250124	TCGTCCGCATCACCTTGTTT	60.250	50.000	0.00	0.00	0.00	2.83
619	620	0.949105	GTCGTCCGCATCACCTTGTT	60.949	55.000	0.00	0.00	0.00	2.83
620	621	1.374252	GTCGTCCGCATCACCTTGT	60.374	57.895	0.00	0.00	0.00	3.16
621	622	2.444624	CGTCGTCCGCATCACCTTG	61.445	63.158	0.00	0.00	0.00	3.61
622	623	2.126071	CGTCGTCCGCATCACCTT	60.126	61.111	0.00	0.00	0.00	3.50
623	624	2.543687	CTTCGTCGTCCGCATCACCT	62.544	60.000	0.00	0.00	36.19	4.00
624	625	2.126228	TTCGTCGTCCGCATCACC	60.126	61.111	0.00	0.00	36.19	4.02
625	626	1.134530	CTCTTCGTCGTCCGCATCAC	61.135	60.000	0.00	0.00	36.19	3.06
626	627	1.136774	CTCTTCGTCGTCCGCATCA	59.863	57.895	0.00	0.00	36.19	3.07
627	628	2.224885	GCTCTTCGTCGTCCGCATC	61.225	63.158	0.00	0.00	36.19	3.91
628	629	2.202623	GCTCTTCGTCGTCCGCAT	60.203	61.111	0.00	0.00	36.19	4.73
629	630	4.415332	GGCTCTTCGTCGTCCGCA	62.415	66.667	0.00	0.00	36.19	5.69
631	632	3.720106	CTCGGCTCTTCGTCGTCCG	62.720	68.421	0.00	0.00	42.47	4.79
632	633	1.919956	TTCTCGGCTCTTCGTCGTCC	61.920	60.000	0.00	0.00	42.47	4.79
633	634	0.521659	CTTCTCGGCTCTTCGTCGTC	60.522	60.000	0.00	0.00	42.47	4.20
634	635	0.954449	TCTTCTCGGCTCTTCGTCGT	60.954	55.000	0.00	0.00	42.47	4.34
635	636	0.247894	CTCTTCTCGGCTCTTCGTCG	60.248	60.000	0.00	0.00	43.46	5.12
636	637	1.063469	CTCTCTTCTCGGCTCTTCGTC	59.937	57.143	0.00	0.00	0.00	4.20
637	638	1.091537	CTCTCTTCTCGGCTCTTCGT	58.908	55.000	0.00	0.00	0.00	3.85
638	639	0.248458	GCTCTCTTCTCGGCTCTTCG	60.248	60.000	0.00	0.00	0.00	3.79
639	640	0.102300	GGCTCTCTTCTCGGCTCTTC	59.898	60.000	0.00	0.00	0.00	2.87
640	641	1.662438	CGGCTCTCTTCTCGGCTCTT	61.662	60.000	0.00	0.00	0.00	2.85
641	642	2.118404	CGGCTCTCTTCTCGGCTCT	61.118	63.158	0.00	0.00	0.00	4.09
642	643	2.411290	CGGCTCTCTTCTCGGCTC	59.589	66.667	0.00	0.00	0.00	4.70
643	644	2.361865	ACGGCTCTCTTCTCGGCT	60.362	61.111	0.00	0.00	0.00	5.52
644	645	2.202676	CACGGCTCTCTTCTCGGC	60.203	66.667	0.00	0.00	0.00	5.54
645	646	1.137825	GACACGGCTCTCTTCTCGG	59.862	63.158	0.00	0.00	0.00	4.63
646	647	1.226156	CGACACGGCTCTCTTCTCG	60.226	63.158	0.00	0.00	0.00	4.04
647	648	1.515304	GCGACACGGCTCTCTTCTC	60.515	63.158	0.00	0.00	0.00	2.87
648	649	1.974343	AGCGACACGGCTCTCTTCT	60.974	57.895	0.00	0.00	39.61	2.85
649	650	1.803519	CAGCGACACGGCTCTCTTC	60.804	63.158	0.00	0.00	42.53	2.87
650	651	2.259818	CAGCGACACGGCTCTCTT	59.740	61.111	0.00	0.00	42.53	2.85
651	652	2.673341	TCAGCGACACGGCTCTCT	60.673	61.111	0.00	0.00	42.53	3.10
652	653	2.505118	GTCAGCGACACGGCTCTC	60.505	66.667	4.20	0.00	42.53	3.20
653	654	3.295273	TGTCAGCGACACGGCTCT	61.295	61.111	7.20	0.00	42.53	4.09
684	685	0.229500	CTGTTTTGGCGCGAAAAAGC	59.771	50.000	28.17	18.54	0.00	3.51
685	686	1.555477	ACTGTTTTGGCGCGAAAAAG	58.445	45.000	28.17	25.60	0.00	2.27
686	687	1.921230	GAACTGTTTTGGCGCGAAAAA	59.079	42.857	28.17	20.66	0.00	1.94
687	688	1.551145	GAACTGTTTTGGCGCGAAAA	58.449	45.000	23.88	23.88	0.00	2.29
688	689	0.590230	CGAACTGTTTTGGCGCGAAA	60.590	50.000	13.91	13.91	0.00	3.46
689	690	1.010574	CGAACTGTTTTGGCGCGAA	60.011	52.632	12.10	0.00	0.00	4.70
690	691	2.629210	CGAACTGTTTTGGCGCGA	59.371	55.556	12.10	0.00	0.00	5.87
691	692	3.091022	GCGAACTGTTTTGGCGCG	61.091	61.111	0.00	0.00	38.24	6.86
692	693	2.729491	GGCGAACTGTTTTGGCGC	60.729	61.111	13.79	13.79	46.20	6.53
693	694	2.050442	GGGCGAACTGTTTTGGCG	60.050	61.111	11.96	5.00	41.72	5.69
694	695	1.007387	CTGGGCGAACTGTTTTGGC	60.007	57.895	10.46	10.46	40.35	4.52
695	696	1.007387	GCTGGGCGAACTGTTTTGG	60.007	57.895	0.00	0.00	0.00	3.28
696	697	4.633980	GCTGGGCGAACTGTTTTG	57.366	55.556	0.00	0.00	0.00	2.44
759	760	3.896863	CTTGGGCCGAAAACAGCGC	62.897	63.158	0.00	0.00	41.90	5.92
760	761	2.255252	CTTGGGCCGAAAACAGCG	59.745	61.111	0.54	0.00	0.00	5.18
761	762	2.049156	GCTTGGGCCGAAAACAGC	60.049	61.111	0.54	0.00	0.00	4.40
771	772	1.153765	GATTTTCGCTGGCTTGGGC	60.154	57.895	0.00	0.00	37.82	5.36
772	773	1.137404	CGATTTTCGCTGGCTTGGG	59.863	57.895	0.00	0.00	31.14	4.12
773	774	1.137404	CCGATTTTCGCTGGCTTGG	59.863	57.895	0.00	0.00	38.82	3.61
774	775	1.137404	CCCGATTTTCGCTGGCTTG	59.863	57.895	0.00	0.00	38.82	4.01
775	776	2.700773	GCCCGATTTTCGCTGGCTT	61.701	57.895	9.12	0.00	41.74	4.35
776	777	3.134127	GCCCGATTTTCGCTGGCT	61.134	61.111	9.12	0.00	41.74	4.75
777	778	3.113386	GAGCCCGATTTTCGCTGGC	62.113	63.158	8.54	8.54	44.11	4.85
778	779	2.472909	GGAGCCCGATTTTCGCTGG	61.473	63.158	0.00	0.00	38.82	4.85
779	780	1.450312	AGGAGCCCGATTTTCGCTG	60.450	57.895	0.00	0.00	38.82	5.18
780	781	1.450312	CAGGAGCCCGATTTTCGCT	60.450	57.895	0.00	0.00	38.82	4.93
781	782	2.472909	CCAGGAGCCCGATTTTCGC	61.473	63.158	0.00	0.00	38.82	4.70
782	783	1.819632	CCCAGGAGCCCGATTTTCG	60.820	63.158	0.00	0.00	40.07	3.46
783	784	0.748367	GTCCCAGGAGCCCGATTTTC	60.748	60.000	0.00	0.00	0.00	2.29
784	785	1.303282	GTCCCAGGAGCCCGATTTT	59.697	57.895	0.00	0.00	0.00	1.82
785	786	2.998949	GTCCCAGGAGCCCGATTT	59.001	61.111	0.00	0.00	0.00	2.17
786	787	3.470888	CGTCCCAGGAGCCCGATT	61.471	66.667	0.00	0.00	0.00	3.34
792	793	4.803426	CAGTCGCGTCCCAGGAGC	62.803	72.222	5.77	0.00	0.00	4.70
793	794	4.135153	CCAGTCGCGTCCCAGGAG	62.135	72.222	5.77	0.00	0.00	3.69
801	802	4.922026	AAAACGGCCCAGTCGCGT	62.922	61.111	5.77	0.00	32.11	6.01
802	803	3.656045	AAAAACGGCCCAGTCGCG	61.656	61.111	0.00	0.00	32.11	5.87
843	844	2.234296	ACAGAAAGGCCTCCCCAGG	61.234	63.158	5.23	0.00	43.82	4.45
844	845	1.001641	CACAGAAAGGCCTCCCCAG	60.002	63.158	5.23	0.00	35.39	4.45
845	846	2.538141	CCACAGAAAGGCCTCCCCA	61.538	63.158	5.23	0.00	35.39	4.96
846	847	2.356667	CCACAGAAAGGCCTCCCC	59.643	66.667	5.23	0.00	0.00	4.81
847	848	2.356667	CCCACAGAAAGGCCTCCC	59.643	66.667	5.23	0.00	0.00	4.30
848	849	2.361737	GCCCACAGAAAGGCCTCC	60.362	66.667	5.23	0.23	43.76	4.30
869	870	2.370189	ACATACTAAGGGCATCTCCAGC	59.630	50.000	0.00	0.00	36.21	4.85
870	871	3.389329	ACACATACTAAGGGCATCTCCAG	59.611	47.826	0.00	0.00	36.21	3.86
871	872	3.384168	ACACATACTAAGGGCATCTCCA	58.616	45.455	0.00	0.00	36.21	3.86
872	873	4.561734	GCTACACATACTAAGGGCATCTCC	60.562	50.000	0.00	0.00	0.00	3.71
873	874	4.561105	GCTACACATACTAAGGGCATCTC	58.439	47.826	0.00	0.00	0.00	2.75
874	875	3.005897	CGCTACACATACTAAGGGCATCT	59.994	47.826	0.00	0.00	0.00	2.90
875	876	3.005472	TCGCTACACATACTAAGGGCATC	59.995	47.826	0.00	0.00	0.00	3.91
876	877	2.963101	TCGCTACACATACTAAGGGCAT	59.037	45.455	0.00	0.00	0.00	4.40
877	878	2.380941	TCGCTACACATACTAAGGGCA	58.619	47.619	0.00	0.00	0.00	5.36
878	879	3.662247	ATCGCTACACATACTAAGGGC	57.338	47.619	0.00	0.00	0.00	5.19
879	880	4.227538	CGAATCGCTACACATACTAAGGG	58.772	47.826	0.00	0.00	0.00	3.95
880	881	4.856664	ACGAATCGCTACACATACTAAGG	58.143	43.478	1.15	0.00	0.00	2.69
881	882	4.910456	GGACGAATCGCTACACATACTAAG	59.090	45.833	1.15	0.00	0.00	2.18
882	883	4.261322	GGGACGAATCGCTACACATACTAA	60.261	45.833	1.15	0.00	34.96	2.24
883	884	3.251729	GGGACGAATCGCTACACATACTA	59.748	47.826	1.15	0.00	34.96	1.82
884	885	2.034305	GGGACGAATCGCTACACATACT	59.966	50.000	1.15	0.00	34.96	2.12
885	886	2.391879	GGGACGAATCGCTACACATAC	58.608	52.381	1.15	0.00	34.96	2.39
886	887	1.338973	GGGGACGAATCGCTACACATA	59.661	52.381	1.15	0.00	37.90	2.29
887	888	0.104304	GGGGACGAATCGCTACACAT	59.896	55.000	1.15	0.00	37.90	3.21
888	889	1.514087	GGGGACGAATCGCTACACA	59.486	57.895	1.15	0.00	37.90	3.72
889	890	4.414732	GGGGACGAATCGCTACAC	57.585	61.111	1.15	0.00	37.90	2.90
926	927	1.669211	GCGTTAGAGCGTCTGAGGTTT	60.669	52.381	0.00	0.00	0.00	3.27
927	928	0.109226	GCGTTAGAGCGTCTGAGGTT	60.109	55.000	0.00	0.00	0.00	3.50
928	929	1.507174	GCGTTAGAGCGTCTGAGGT	59.493	57.895	0.00	0.00	0.00	3.85
930	931	0.109272	TTGGCGTTAGAGCGTCTGAG	60.109	55.000	0.00	0.00	37.38	3.35
931	932	0.388134	GTTGGCGTTAGAGCGTCTGA	60.388	55.000	0.00	0.00	37.38	3.27
932	933	1.352156	GGTTGGCGTTAGAGCGTCTG	61.352	60.000	0.00	0.00	37.38	3.51
1312	1364	7.719871	AACTAGATGTTCCTTGAGTAGCTTA	57.280	36.000	0.00	0.00	32.63	3.09
1316	1368	8.402472	CAGAGTAACTAGATGTTCCTTGAGTAG	58.598	40.741	0.00	0.00	39.89	2.57
1321	1373	4.800993	CGCAGAGTAACTAGATGTTCCTTG	59.199	45.833	0.00	0.00	39.89	3.61
1324	1376	4.373348	ACGCAGAGTAACTAGATGTTCC	57.627	45.455	0.00	0.00	39.89	3.62
1358	1410	4.379339	TGATCAACGTACGGATGATTCA	57.621	40.909	28.18	23.96	34.10	2.57
1359	1411	5.907197	AATGATCAACGTACGGATGATTC	57.093	39.130	28.18	22.49	34.10	2.52
1360	1412	6.677781	AAAATGATCAACGTACGGATGATT	57.322	33.333	28.18	20.19	34.10	2.57
1407	1476	5.280164	GCCAGTCACCAGATCATATCCATTA	60.280	44.000	0.00	0.00	0.00	1.90
1425	1494	0.322816	TGCAGGAAAGATGGCCAGTC	60.323	55.000	13.05	9.33	0.00	3.51
1426	1495	0.333993	ATGCAGGAAAGATGGCCAGT	59.666	50.000	13.05	0.00	0.00	4.00
1427	1496	1.481871	AATGCAGGAAAGATGGCCAG	58.518	50.000	13.05	0.00	0.00	4.85
1429	1498	4.677673	AATTAATGCAGGAAAGATGGCC	57.322	40.909	0.00	0.00	0.00	5.36
1446	1515	8.264347	TCAACCTGACAAGAGTATGCATAATTA	58.736	33.333	8.28	0.00	0.00	1.40
1447	1516	7.112122	TCAACCTGACAAGAGTATGCATAATT	58.888	34.615	8.28	0.00	0.00	1.40
1455	1524	7.823745	AAAACATTCAACCTGACAAGAGTAT	57.176	32.000	0.00	0.00	0.00	2.12
1458	1527	6.332630	ACAAAAACATTCAACCTGACAAGAG	58.667	36.000	0.00	0.00	0.00	2.85
1496	1576	7.148804	GCAACTAGTTAAATTAAAGCCAAGTGC	60.149	37.037	8.04	0.00	41.71	4.40
1555	1635	9.941325	CAAATGGAGCTAATCACTAGAATAGAT	57.059	33.333	0.00	0.00	42.77	1.98
1562	1642	6.293298	GCATCACAAATGGAGCTAATCACTAG	60.293	42.308	0.00	0.00	0.00	2.57
1564	1644	4.337555	GCATCACAAATGGAGCTAATCACT	59.662	41.667	0.00	0.00	0.00	3.41
1602	1682	9.597170	GCAAGATGATGAGATAATAGCAAGATA	57.403	33.333	0.00	0.00	0.00	1.98
1618	1698	1.268896	GGACAATGCCGCAAGATGATG	60.269	52.381	0.00	0.00	43.02	3.07
1630	1710	2.082366	CGCGCAAACTGGACAATGC	61.082	57.895	8.75	0.00	35.49	3.56
1644	1724	2.104144	CAAGTAGAATTCAATGCGCGC	58.896	47.619	27.26	27.26	0.00	6.86
1647	1727	7.169813	TGCTAGTATCAAGTAGAATTCAATGCG	59.830	37.037	8.44	0.00	31.18	4.73
1722	1811	2.542907	GCACACCCACCACAGAACG	61.543	63.158	0.00	0.00	0.00	3.95
1870	1961	1.609501	TTGGAGACGACCTGGGAGG	60.610	63.158	0.00	0.00	42.49	4.30
2124	2277	6.155221	AGACATGCTAGTGTTTAGGAGATTCA	59.845	38.462	0.00	0.00	31.16	2.57
2143	2296	3.366679	GCAACCCAGACATTTCAGACATG	60.367	47.826	0.00	0.00	0.00	3.21
2163	2351	6.964131	ACAGAAACTACTGAGCATTACTTGCA	60.964	38.462	0.00	0.00	45.55	4.08
2281	2476	2.917933	CCCAAAGATATCTCGGCAACA	58.082	47.619	5.51	0.00	0.00	3.33
2444	2641	4.385825	AGCCAATCTAACGACAAACAAGA	58.614	39.130	0.00	0.00	0.00	3.02
2696	2934	5.631119	ACTACAAATTAGAAAGGCAGGTGT	58.369	37.500	0.00	0.00	0.00	4.16
3318	5251	7.423844	TTCAAGCATAAGTGATCTCTCCTAA	57.576	36.000	0.00	0.00	0.00	2.69
3459	5396	3.403038	ACTTTGTGAAGCAGCTTATCGT	58.597	40.909	7.92	0.00	36.29	3.73
3538	5534	8.882415	TCATCCAAGGTAATCGTCTAAATAAC	57.118	34.615	0.00	0.00	0.00	1.89
3699	7484	5.006165	GCACAGATATGCTTAGAACAGACAC	59.994	44.000	0.00	0.00	42.62	3.67
3797	7613	1.663643	GTTGTCACAACAGTTCGCTCA	59.336	47.619	16.14	0.00	36.57	4.26
3839	7655	8.970020	TGAACTGCCAAAACATCTTATATTCAT	58.030	29.630	0.00	0.00	0.00	2.57
3872	7688	7.432148	TCTACCTCTTATACATTTTGGCAGA	57.568	36.000	0.00	0.00	0.00	4.26
3914	7740	9.593134	AAATGATAAGCAACGCCAAATAAATAA	57.407	25.926	0.00	0.00	0.00	1.40
3921	7747	2.992543	GCAAATGATAAGCAACGCCAAA	59.007	40.909	0.00	0.00	0.00	3.28
3922	7748	2.029560	TGCAAATGATAAGCAACGCCAA	60.030	40.909	0.00	0.00	34.97	4.52
3938	7764	3.500448	TCATGAACAGGGTAGTGCAAA	57.500	42.857	0.00	0.00	29.06	3.68
3956	7782	9.416284	AGGTCAAAAATAAAGGTCTTAACTTCA	57.584	29.630	0.00	0.00	0.00	3.02
3987	7813	2.931969	GGTAGATGGCAAAGCAAAATGC	59.068	45.455	0.00	0.00	45.46	3.56
3989	7815	4.888326	TTGGTAGATGGCAAAGCAAAAT	57.112	36.364	9.20	0.00	0.00	1.82
3991	7817	5.260424	TCTATTGGTAGATGGCAAAGCAAA	58.740	37.500	13.83	5.91	34.63	3.68
3998	7824	5.216622	AGTAGGTTCTATTGGTAGATGGCA	58.783	41.667	0.00	0.00	36.84	4.92
3999	7825	5.810080	AGTAGGTTCTATTGGTAGATGGC	57.190	43.478	0.00	0.00	36.84	4.40
4026	7852	3.119708	GCAGAGATCGCCAAAATGAAAGT	60.120	43.478	0.00	0.00	0.00	2.66
4027	7853	3.432782	GCAGAGATCGCCAAAATGAAAG	58.567	45.455	0.00	0.00	0.00	2.62
4028	7854	3.492421	GCAGAGATCGCCAAAATGAAA	57.508	42.857	0.00	0.00	0.00	2.69
4038	7864	3.924918	TTAGTATCAGGCAGAGATCGC	57.075	47.619	0.00	0.00	0.00	4.58
4039	7865	7.598278	ACTAATTTAGTATCAGGCAGAGATCG	58.402	38.462	7.31	0.00	37.23	3.69
4042	7868	9.588096	TCATACTAATTTAGTATCAGGCAGAGA	57.412	33.333	21.08	12.67	46.22	3.10
4045	7871	9.935241	ACATCATACTAATTTAGTATCAGGCAG	57.065	33.333	21.08	12.13	46.22	4.85
4046	7872	9.710900	CACATCATACTAATTTAGTATCAGGCA	57.289	33.333	21.08	7.99	46.22	4.75
4047	7873	9.712305	ACACATCATACTAATTTAGTATCAGGC	57.288	33.333	21.08	0.00	46.22	4.85
4090	9164	6.935771	GCAGTCCTCATCAGAAAATAGATCAT	59.064	38.462	0.00	0.00	0.00	2.45
4091	9165	6.099413	AGCAGTCCTCATCAGAAAATAGATCA	59.901	38.462	0.00	0.00	0.00	2.92
4092	9166	6.523840	AGCAGTCCTCATCAGAAAATAGATC	58.476	40.000	0.00	0.00	0.00	2.75
4093	9167	6.497624	AGCAGTCCTCATCAGAAAATAGAT	57.502	37.500	0.00	0.00	0.00	1.98
4094	9168	5.946942	AGCAGTCCTCATCAGAAAATAGA	57.053	39.130	0.00	0.00	0.00	1.98
4110	9189	5.004821	CAGTATTGTCGTTCACATAGCAGTC	59.995	44.000	0.00	0.00	33.90	3.51
4111	9190	4.864806	CAGTATTGTCGTTCACATAGCAGT	59.135	41.667	0.00	0.00	33.90	4.40
4119	9198	1.128692	GGCAGCAGTATTGTCGTTCAC	59.871	52.381	0.00	0.00	0.00	3.18
4120	9199	1.270571	TGGCAGCAGTATTGTCGTTCA	60.271	47.619	0.00	0.00	0.00	3.18
4159	9238	0.040067	GCATAATTAGCGTGCTGGCC	60.040	55.000	4.25	0.00	36.02	5.36
4160	9239	0.040067	GGCATAATTAGCGTGCTGGC	60.040	55.000	4.25	1.75	38.83	4.85
4164	9243	1.065401	TGCTTGGCATAATTAGCGTGC	59.935	47.619	3.88	1.60	36.43	5.34
4199	9432	3.006859	GGGTGGAGTTTGAGGGATTTTTG	59.993	47.826	0.00	0.00	0.00	2.44
4323	9556	6.724441	TGGACCTCAATCTTCTCTAACACTTA	59.276	38.462	0.00	0.00	0.00	2.24
4331	9564	2.909006	TGCTTGGACCTCAATCTTCTCT	59.091	45.455	0.00	0.00	34.45	3.10
4333	9566	2.026449	CCTGCTTGGACCTCAATCTTCT	60.026	50.000	0.00	0.00	38.35	2.85
4334	9567	2.363683	CCTGCTTGGACCTCAATCTTC	58.636	52.381	0.00	0.00	38.35	2.87
4347	9580	2.689983	GGGTATTCACATTCCCTGCTTG	59.310	50.000	0.00	0.00	37.10	4.01
4356	9589	6.306987	AGAAACTTGACTGGGTATTCACATT	58.693	36.000	0.00	0.00	0.00	2.71
4377	9610	4.037923	GCAAGACAATCCTTTGTTGGAGAA	59.962	41.667	0.00	0.00	46.01	2.87
4383	9616	4.942761	ACATGCAAGACAATCCTTTGTT	57.057	36.364	0.00	0.00	46.01	2.83
4385	9618	3.430895	GCAACATGCAAGACAATCCTTTG	59.569	43.478	0.00	0.00	44.26	2.77
4386	9619	3.656559	GCAACATGCAAGACAATCCTTT	58.343	40.909	0.00	0.00	44.26	3.11
4387	9620	3.308438	GCAACATGCAAGACAATCCTT	57.692	42.857	0.00	0.00	44.26	3.36
4399	9632	3.968649	TCTTTCACTTGAAGCAACATGC	58.031	40.909	0.00	0.00	45.46	4.06

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.