Multiple sequence alignment - TraesCS2B01G538900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G538900 chr2B 100.000 4909 0 0 1 4909 734123130 734128038 0.000000e+00 9066.0
1 TraesCS2B01G538900 chr2B 94.964 1549 67 5 2420 3959 734187109 734188655 0.000000e+00 2418.0
2 TraesCS2B01G538900 chr2B 93.365 422 21 6 4049 4468 734188688 734189104 6.980000e-173 617.0
3 TraesCS2B01G538900 chr2B 98.204 167 3 0 2179 2345 734186613 734186779 4.810000e-75 292.0
4 TraesCS2B01G538900 chr2B 94.012 167 8 1 1942 2108 734186450 734186614 8.160000e-63 252.0
5 TraesCS2B01G538900 chr2D 95.861 3407 89 22 781 4150 603601389 603604780 0.000000e+00 5463.0
6 TraesCS2B01G538900 chr2D 93.539 2523 118 17 1956 4439 603639438 603641954 0.000000e+00 3714.0
7 TraesCS2B01G538900 chr2D 95.034 745 22 11 1 738 603600557 603601293 0.000000e+00 1157.0
8 TraesCS2B01G538900 chr2D 92.857 308 11 5 4430 4731 603605134 603605436 2.100000e-118 436.0
9 TraesCS2B01G538900 chr2D 93.388 242 11 3 4198 4439 603604786 603605022 2.170000e-93 353.0
10 TraesCS2B01G538900 chr2D 88.636 176 9 1 4734 4909 603605476 603605640 2.320000e-48 204.0
11 TraesCS2B01G538900 chr2D 91.803 61 3 2 3644 3704 31953650 31953592 3.150000e-12 84.2
12 TraesCS2B01G538900 chr2A 93.792 3447 129 35 781 4190 735775476 735778874 0.000000e+00 5101.0
13 TraesCS2B01G538900 chr2A 83.378 752 82 27 5 738 735774662 735775388 0.000000e+00 656.0
14 TraesCS2B01G538900 chr2A 93.264 193 11 2 4240 4432 735778875 735779065 2.890000e-72 283.0
15 TraesCS2B01G538900 chr2A 87.629 97 10 2 4734 4830 735781126 735781220 1.440000e-20 111.0
16 TraesCS2B01G538900 chr4A 91.562 320 25 2 3265 3583 327608361 327608679 1.620000e-119 440.0
17 TraesCS2B01G538900 chr7D 90.175 285 28 0 3265 3549 410894541 410894825 6.000000e-99 372.0
18 TraesCS2B01G538900 chr7D 89.123 285 31 0 3265 3549 315166717 315166433 6.040000e-94 355.0
19 TraesCS2B01G538900 chr3D 89.123 285 29 1 3265 3549 25285311 25285593 2.170000e-93 353.0
20 TraesCS2B01G538900 chr7B 88.070 285 34 0 3265 3549 325472725 325473009 6.090000e-89 339.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G538900 chr2B 734123130 734128038 4908 False 9066.00 9066 100.00000 1 4909 1 chr2B.!!$F1 4908
1 TraesCS2B01G538900 chr2B 734186450 734189104 2654 False 894.75 2418 95.13625 1942 4468 4 chr2B.!!$F2 2526
2 TraesCS2B01G538900 chr2D 603639438 603641954 2516 False 3714.00 3714 93.53900 1956 4439 1 chr2D.!!$F1 2483
3 TraesCS2B01G538900 chr2D 603600557 603605640 5083 False 1522.60 5463 93.15520 1 4909 5 chr2D.!!$F2 4908
4 TraesCS2B01G538900 chr2A 735774662 735781220 6558 False 1537.75 5101 89.51575 5 4830 4 chr2A.!!$F1 4825

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
758 808 0.248289 TTCCGCTATTATAGGCCGCC 59.752 55.000 0.00 0.00 0.00 6.13 F
1521 1597 0.606673 GTTCACCTTCCTGCAGGGTC 60.607 60.000 32.23 7.41 38.42 4.46 F
2021 2132 3.582164 ACTTATTTGCAGGGGTGGAAAA 58.418 40.909 0.00 0.00 33.11 2.29 F
3281 3706 3.943381 TGCTTGCTCATAGAATTCCAGTG 59.057 43.478 0.65 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2064 2175 3.220940 TCACAGTCAATTGCCAACATGA 58.779 40.909 0.00 0.29 0.00 3.07 R
3281 3706 3.330267 CAGCTCTTGACAAGGAAGGTAC 58.670 50.000 15.13 0.00 0.00 3.34 R
3677 4103 0.389948 GCACCGATTTCTGGAGTCGT 60.390 55.000 0.06 0.00 33.77 4.34 R
4538 5089 0.249741 GGCGGCCGTATGTTCAGTAT 60.250 55.000 28.70 0.00 0.00 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
346 359 9.710900 GTTGGGAGTTTCATTTTGAGAAATAAT 57.289 29.630 0.00 0.00 37.33 1.28
404 417 4.818546 ACATTTGCTTTGGATCTAGGATCG 59.181 41.667 0.00 0.00 0.00 3.69
490 503 7.552687 TCTTCTTCGTGGTATTAATCTTTGCAT 59.447 33.333 0.00 0.00 0.00 3.96
662 675 2.676471 GAACATGCTTGGGCCGGT 60.676 61.111 1.90 0.00 37.74 5.28
663 676 2.676471 AACATGCTTGGGCCGGTC 60.676 61.111 1.90 0.00 37.74 4.79
664 677 4.740822 ACATGCTTGGGCCGGTCC 62.741 66.667 21.35 21.35 37.74 4.46
719 738 1.396996 CAGTAGGAACGAAAATGGGCG 59.603 52.381 0.00 0.00 0.00 6.13
751 801 6.775708 ACCAATAGGCTTTTCCGCTATTATA 58.224 36.000 0.00 0.00 40.77 0.98
757 807 2.088950 TTTCCGCTATTATAGGCCGC 57.911 50.000 0.00 0.00 0.00 6.53
758 808 0.248289 TTCCGCTATTATAGGCCGCC 59.752 55.000 0.00 0.00 0.00 6.13
811 883 1.289530 ACTAGCCCTAGAAGCAGGACT 59.710 52.381 9.20 0.00 38.00 3.85
916 988 1.821332 CCCAGCCGCCATCTCTTTC 60.821 63.158 0.00 0.00 0.00 2.62
980 1052 1.133167 CAACAACCCTTTCCCCTTCCT 60.133 52.381 0.00 0.00 0.00 3.36
987 1059 0.904865 CTTTCCCCTTCCTTTGCCCC 60.905 60.000 0.00 0.00 0.00 5.80
1085 1158 1.662438 GCCGGAGAGGTCTGTCTCTG 61.662 65.000 5.05 3.14 45.98 3.35
1297 1370 6.936900 TCTCCAAAGATTTTCAGAAGGTAGTG 59.063 38.462 0.00 0.00 0.00 2.74
1314 1387 2.434428 AGTGCTTTGATTCAGAGCCAG 58.566 47.619 22.30 1.80 40.27 4.85
1334 1407 0.955178 CCGTGTCTCACACTCTCACT 59.045 55.000 5.31 0.00 46.46 3.41
1354 1430 1.197492 TGCATACGCAGCTCTGTTTTG 59.803 47.619 0.00 0.00 45.36 2.44
1412 1488 4.134563 TCTGCTTTTGGTTCCAGTACTTC 58.865 43.478 0.00 0.00 0.00 3.01
1482 1558 1.885887 TGAATGAGTTTTCCGGCAAGG 59.114 47.619 0.00 0.00 42.97 3.61
1521 1597 0.606673 GTTCACCTTCCTGCAGGGTC 60.607 60.000 32.23 7.41 38.42 4.46
1577 1659 6.555315 AGTTTTCAAGGATATCGAACATTGC 58.445 36.000 9.10 0.00 0.00 3.56
1704 1790 8.911918 TTATCAAGAGGTACAAGCTAACAAAA 57.088 30.769 0.00 0.00 0.00 2.44
1705 1791 6.613755 TCAAGAGGTACAAGCTAACAAAAC 57.386 37.500 0.00 0.00 0.00 2.43
1706 1792 6.116806 TCAAGAGGTACAAGCTAACAAAACA 58.883 36.000 0.00 0.00 0.00 2.83
1718 1804 6.215845 AGCTAACAAAACAATGATCCAACAC 58.784 36.000 0.00 0.00 0.00 3.32
1721 1807 7.096065 GCTAACAAAACAATGATCCAACACTTC 60.096 37.037 0.00 0.00 0.00 3.01
1823 1909 7.809546 TTTTCACATTGGTACTTGTACATCA 57.190 32.000 12.23 0.59 0.00 3.07
1846 1932 9.661563 ATCACGTAGGATTCTTTATACAAAACA 57.338 29.630 0.00 0.00 0.00 2.83
1898 1984 9.525409 GTTGCAAAGCTCAAGATCAATTTATAT 57.475 29.630 0.00 0.00 0.00 0.86
1971 2082 9.739276 TGTCTGATAATTAAGGAACATTTCAGT 57.261 29.630 6.76 0.00 32.10 3.41
1983 2094 5.763204 GGAACATTTCAGTTTCTCCACTACA 59.237 40.000 0.00 0.00 0.00 2.74
2021 2132 3.582164 ACTTATTTGCAGGGGTGGAAAA 58.418 40.909 0.00 0.00 33.11 2.29
2064 2175 8.110908 AGTTTCTAGTAGTATGAACTCTGGAGT 58.889 37.037 0.00 0.00 44.94 3.85
2616 3031 5.584551 AACTCAAGGTCCTATTGTTCCTT 57.415 39.130 0.00 0.00 40.38 3.36
2816 3231 6.957635 GCACGCAATACAGATATAATGACATG 59.042 38.462 0.00 0.00 0.00 3.21
2985 3406 4.689612 ACCCATGGTATGTGTCTATGAC 57.310 45.455 11.73 0.00 32.11 3.06
3281 3706 3.943381 TGCTTGCTCATAGAATTCCAGTG 59.057 43.478 0.65 0.00 0.00 3.66
3677 4103 2.030027 ACATTCAGGACTCCAGTGGA 57.970 50.000 12.40 12.40 0.00 4.02
3695 4121 1.630148 GACGACTCCAGAAATCGGTG 58.370 55.000 0.00 0.00 40.16 4.94
3895 4321 1.518903 GCGGAGAAAGCAAAGGCACT 61.519 55.000 0.00 0.00 44.61 4.40
4043 4469 4.580167 TGGATGTTGAGAGGAACAGTTTTG 59.420 41.667 0.00 0.00 39.18 2.44
4137 4563 9.492973 CTAACCAAGGATCATGAAATTTTGTTT 57.507 29.630 0.00 0.65 0.00 2.83
4183 4609 8.193250 TGACTTAAACTTGAGTGTACTTTCAC 57.807 34.615 0.00 0.00 38.46 3.18
4334 4761 2.883386 GCAGGCTATCAGAATTTGGAGG 59.117 50.000 0.00 0.00 0.00 4.30
4405 4832 8.131100 TCATTAGCAGAATTTTGCATAAGTAGC 58.869 33.333 21.65 6.26 46.47 3.58
4406 4833 7.630242 TTAGCAGAATTTTGCATAAGTAGCT 57.370 32.000 21.65 16.42 46.47 3.32
4538 5089 7.930325 TGGCATCACACAAAAATATCTCAAAAA 59.070 29.630 0.00 0.00 0.00 1.94
4539 5090 8.938906 GGCATCACACAAAAATATCTCAAAAAT 58.061 29.630 0.00 0.00 0.00 1.82
4554 5105 5.353123 TCTCAAAAATACTGAACATACGGCC 59.647 40.000 0.00 0.00 0.00 6.13
4593 5154 9.667107 CTAATAACAAAATGAGTCAGGGTCTTA 57.333 33.333 0.00 0.00 0.00 2.10
4596 5157 5.308825 ACAAAATGAGTCAGGGTCTTACTG 58.691 41.667 0.00 0.00 37.30 2.74
4616 5177 6.963049 ACTGCGTTTATAAACTGAAGGTAG 57.037 37.500 22.57 17.25 36.77 3.18
4617 5178 5.873164 ACTGCGTTTATAAACTGAAGGTAGG 59.127 40.000 22.57 7.91 36.77 3.18
4618 5179 5.797051 TGCGTTTATAAACTGAAGGTAGGT 58.203 37.500 22.57 0.00 36.77 3.08
4619 5180 6.934056 TGCGTTTATAAACTGAAGGTAGGTA 58.066 36.000 22.57 4.33 36.77 3.08
4620 5181 7.558604 TGCGTTTATAAACTGAAGGTAGGTAT 58.441 34.615 22.57 0.00 36.77 2.73
4621 5182 8.694540 TGCGTTTATAAACTGAAGGTAGGTATA 58.305 33.333 22.57 0.00 36.77 1.47
4727 5291 5.470098 TCTGTTAGCTTGAAAACACATCTCC 59.530 40.000 0.00 0.00 32.43 3.71
4729 5293 3.515602 AGCTTGAAAACACATCTCCCT 57.484 42.857 0.00 0.00 0.00 4.20
4731 5295 2.160417 GCTTGAAAACACATCTCCCTCG 59.840 50.000 0.00 0.00 0.00 4.63
4732 5296 3.664107 CTTGAAAACACATCTCCCTCGA 58.336 45.455 0.00 0.00 0.00 4.04
4763 7011 4.015872 TGGAGTTTACATGTGGGAGTTC 57.984 45.455 9.11 0.00 0.00 3.01
4764 7012 3.392947 TGGAGTTTACATGTGGGAGTTCA 59.607 43.478 9.11 0.00 0.00 3.18
4765 7013 4.003648 GGAGTTTACATGTGGGAGTTCAG 58.996 47.826 9.11 0.00 0.00 3.02
4766 7014 4.505039 GGAGTTTACATGTGGGAGTTCAGT 60.505 45.833 9.11 0.00 0.00 3.41
4767 7015 5.279809 GGAGTTTACATGTGGGAGTTCAGTA 60.280 44.000 9.11 0.00 0.00 2.74
4768 7016 5.794894 AGTTTACATGTGGGAGTTCAGTAG 58.205 41.667 9.11 0.00 0.00 2.57
4769 7017 4.819105 TTACATGTGGGAGTTCAGTAGG 57.181 45.455 9.11 0.00 0.00 3.18
4770 7018 2.621070 ACATGTGGGAGTTCAGTAGGT 58.379 47.619 0.00 0.00 0.00 3.08
4771 7019 2.303022 ACATGTGGGAGTTCAGTAGGTG 59.697 50.000 0.00 0.00 0.00 4.00
4772 7020 2.391926 TGTGGGAGTTCAGTAGGTGA 57.608 50.000 0.00 0.00 0.00 4.02
4773 7021 2.902608 TGTGGGAGTTCAGTAGGTGAT 58.097 47.619 0.00 0.00 34.17 3.06
4840 7098 5.472137 GTGTGTGCTGGGAATTAGTAAAGAA 59.528 40.000 0.00 0.00 0.00 2.52
4865 7123 4.826274 TTGAGAGGAAGTAACATCCCAG 57.174 45.455 0.00 0.00 37.71 4.45
4870 7128 1.065709 GGAAGTAACATCCCAGGCGAA 60.066 52.381 0.00 0.00 0.00 4.70
4881 7139 1.340600 CCCAGGCGAATTAACAAGGGA 60.341 52.381 0.00 0.00 37.22 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 115 9.504710 TTGCTTTTCATGAACATTTTCAATTTG 57.495 25.926 7.89 0.00 45.01 2.32
293 298 6.538263 AGAAGCTTGACCAGTTCTTTCTAAT 58.462 36.000 2.10 0.00 0.00 1.73
294 299 5.930135 AGAAGCTTGACCAGTTCTTTCTAA 58.070 37.500 2.10 0.00 0.00 2.10
600 613 1.262417 TGTATGGCCGACACAAGAGA 58.738 50.000 6.20 0.00 0.00 3.10
662 675 2.302445 TCGTAATCCGTTTTCAAGGGGA 59.698 45.455 0.00 0.00 37.06 4.81
663 676 2.417586 GTCGTAATCCGTTTTCAAGGGG 59.582 50.000 0.00 0.00 37.06 4.79
664 677 3.332034 AGTCGTAATCCGTTTTCAAGGG 58.668 45.455 0.00 0.00 37.94 3.95
665 678 5.404946 TCTAGTCGTAATCCGTTTTCAAGG 58.595 41.667 0.00 0.00 37.94 3.61
666 679 6.750501 TCATCTAGTCGTAATCCGTTTTCAAG 59.249 38.462 0.00 0.00 37.94 3.02
667 680 6.623486 TCATCTAGTCGTAATCCGTTTTCAA 58.377 36.000 0.00 0.00 37.94 2.69
719 738 0.107361 AAGCCTATTGGTACACGCCC 60.107 55.000 0.00 0.00 39.29 6.13
757 807 2.358898 CGTAGAAGGATTTGCCCATTGG 59.641 50.000 0.00 0.00 37.37 3.16
758 808 3.278574 TCGTAGAAGGATTTGCCCATTG 58.721 45.455 0.00 0.00 37.37 2.82
905 977 2.174319 GGCGTCGGAAAGAGATGGC 61.174 63.158 0.00 0.00 41.72 4.40
1085 1158 1.463444 AGTACAAAAGCACGCGGAATC 59.537 47.619 12.47 0.00 0.00 2.52
1189 1262 0.782384 CGAACTTCTTGTCGTTCCGG 59.218 55.000 0.00 0.00 36.94 5.14
1297 1370 0.455005 GGCTGGCTCTGAATCAAAGC 59.545 55.000 0.00 0.00 35.27 3.51
1354 1430 3.211963 GCCATGGTCCGGATGCAC 61.212 66.667 14.67 0.00 0.00 4.57
1412 1488 2.179018 CGCCTCACCAATTTGCGG 59.821 61.111 0.00 0.00 41.42 5.69
1460 1536 3.504863 CTTGCCGGAAAACTCATTCATG 58.495 45.455 5.05 0.00 0.00 3.07
1506 1582 1.462238 AGTGACCCTGCAGGAAGGT 60.462 57.895 34.91 23.09 39.89 3.50
1521 1597 2.427232 CAACCCAATTGCTCACAGTG 57.573 50.000 0.00 0.00 0.00 3.66
1718 1804 5.516339 AGAAAAACATGCAAGAAACACGAAG 59.484 36.000 0.00 0.00 0.00 3.79
1721 1807 4.562394 ACAGAAAAACATGCAAGAAACACG 59.438 37.500 0.00 0.00 0.00 4.49
1759 1845 5.716228 ACAATCATGAAAGTTATTCTGGCCA 59.284 36.000 4.71 4.71 0.00 5.36
1823 1909 8.836268 TGTGTTTTGTATAAAGAATCCTACGT 57.164 30.769 0.00 0.00 0.00 3.57
1868 1954 6.389830 TTGATCTTGAGCTTTGCAACTTAA 57.610 33.333 0.00 0.00 0.00 1.85
1898 1984 7.403671 ACTAGTACAACAAGGAGATGAGAGTA 58.596 38.462 0.00 0.00 0.00 2.59
1899 1985 6.249951 ACTAGTACAACAAGGAGATGAGAGT 58.750 40.000 0.00 0.00 0.00 3.24
1900 1986 6.767524 ACTAGTACAACAAGGAGATGAGAG 57.232 41.667 0.00 0.00 0.00 3.20
1913 1999 8.053026 TGAAGAGTCCAAGATACTAGTACAAC 57.947 38.462 4.31 0.33 0.00 3.32
2021 2132 8.211629 ACTAGAAACTTTTCCTATCCGCATTAT 58.788 33.333 0.00 0.00 37.92 1.28
2064 2175 3.220940 TCACAGTCAATTGCCAACATGA 58.779 40.909 0.00 0.29 0.00 3.07
2616 3031 5.480642 ACTTGAGAGCTGAAATCAGAGAA 57.519 39.130 14.43 0.00 46.59 2.87
3281 3706 3.330267 CAGCTCTTGACAAGGAAGGTAC 58.670 50.000 15.13 0.00 0.00 3.34
3584 4009 3.881688 GCAATTCAGACTGGTGCTATCAT 59.118 43.478 15.31 0.00 32.43 2.45
3585 4010 3.054875 AGCAATTCAGACTGGTGCTATCA 60.055 43.478 20.68 0.00 43.51 2.15
3634 4060 9.944663 TGTTTCAGCAAAAGTATAAAGTACAAG 57.055 29.630 0.00 0.00 0.00 3.16
3677 4103 0.389948 GCACCGATTTCTGGAGTCGT 60.390 55.000 0.06 0.00 33.77 4.34
3776 4202 2.951642 CTGTGGCCTCTTCTTCAAAACA 59.048 45.455 3.32 0.00 0.00 2.83
3879 4305 1.322442 ACCAGTGCCTTTGCTTTCTC 58.678 50.000 0.00 0.00 38.71 2.87
3895 4321 1.040646 AGCTCTTCACTCGACAACCA 58.959 50.000 0.00 0.00 0.00 3.67
4027 4453 4.816385 GTCATGACAAAACTGTTCCTCTCA 59.184 41.667 21.07 0.00 0.00 3.27
4043 4469 3.844577 AAATGCTTGCTGAGTCATGAC 57.155 42.857 18.47 18.47 0.00 3.06
4137 4563 1.892474 GTTAGCAAACCCTTCCATGCA 59.108 47.619 0.00 0.00 41.18 3.96
4183 4609 4.018779 TCCTAAACCCTTACCACATTCAGG 60.019 45.833 0.00 0.00 0.00 3.86
4303 4729 5.713792 TCTGATAGCCTGCTAGTGATTAC 57.286 43.478 5.00 0.00 31.45 1.89
4472 5021 6.153067 CGTGCAATATTACCCACAAGAAAAA 58.847 36.000 11.34 0.00 0.00 1.94
4477 5026 4.083003 ACAACGTGCAATATTACCCACAAG 60.083 41.667 0.00 5.23 0.00 3.16
4481 5032 6.570672 TTAAACAACGTGCAATATTACCCA 57.429 33.333 0.00 0.00 0.00 4.51
4538 5089 0.249741 GGCGGCCGTATGTTCAGTAT 60.250 55.000 28.70 0.00 0.00 2.12
4539 5090 1.142314 GGCGGCCGTATGTTCAGTA 59.858 57.895 28.70 0.00 0.00 2.74
4540 5091 2.125269 GGCGGCCGTATGTTCAGT 60.125 61.111 28.70 0.00 0.00 3.41
4542 5093 2.036006 GTTGGCGGCCGTATGTTCA 61.036 57.895 28.70 12.58 0.00 3.18
4554 5105 3.857052 TGTTATTAGGTCTGAGTTGGCG 58.143 45.455 0.00 0.00 0.00 5.69
4596 5157 8.972349 GTATACCTACCTTCAGTTTATAAACGC 58.028 37.037 19.92 0.68 43.51 4.84
4616 5177 4.113354 CCGTTTCTGCTCTCTTGTATACC 58.887 47.826 0.00 0.00 0.00 2.73
4617 5178 4.995124 TCCGTTTCTGCTCTCTTGTATAC 58.005 43.478 0.00 0.00 0.00 1.47
4618 5179 5.592054 CATCCGTTTCTGCTCTCTTGTATA 58.408 41.667 0.00 0.00 0.00 1.47
4619 5180 4.437239 CATCCGTTTCTGCTCTCTTGTAT 58.563 43.478 0.00 0.00 0.00 2.29
4620 5181 3.849911 CATCCGTTTCTGCTCTCTTGTA 58.150 45.455 0.00 0.00 0.00 2.41
4621 5182 2.693069 CATCCGTTTCTGCTCTCTTGT 58.307 47.619 0.00 0.00 0.00 3.16
4727 5291 5.391312 AAACTCCAATTCCATTTTCGAGG 57.609 39.130 0.00 0.00 0.00 4.63
4729 5293 6.885952 TGTAAACTCCAATTCCATTTTCGA 57.114 33.333 0.00 0.00 0.00 3.71
4731 5295 7.331687 CCACATGTAAACTCCAATTCCATTTTC 59.668 37.037 0.00 0.00 0.00 2.29
4732 5296 7.160726 CCACATGTAAACTCCAATTCCATTTT 58.839 34.615 0.00 0.00 0.00 1.82
4763 7011 2.705658 TCCCATGCCTAATCACCTACTG 59.294 50.000 0.00 0.00 0.00 2.74
4764 7012 3.060479 TCCCATGCCTAATCACCTACT 57.940 47.619 0.00 0.00 0.00 2.57
4765 7013 3.136626 ACTTCCCATGCCTAATCACCTAC 59.863 47.826 0.00 0.00 0.00 3.18
4766 7014 3.393687 ACTTCCCATGCCTAATCACCTA 58.606 45.455 0.00 0.00 0.00 3.08
4767 7015 2.208872 ACTTCCCATGCCTAATCACCT 58.791 47.619 0.00 0.00 0.00 4.00
4768 7016 2.689983 CAACTTCCCATGCCTAATCACC 59.310 50.000 0.00 0.00 0.00 4.02
4769 7017 3.620488 TCAACTTCCCATGCCTAATCAC 58.380 45.455 0.00 0.00 0.00 3.06
4770 7018 4.314522 TTCAACTTCCCATGCCTAATCA 57.685 40.909 0.00 0.00 0.00 2.57
4771 7019 5.859205 AATTCAACTTCCCATGCCTAATC 57.141 39.130 0.00 0.00 0.00 1.75
4772 7020 6.625532 AAAATTCAACTTCCCATGCCTAAT 57.374 33.333 0.00 0.00 0.00 1.73
4773 7021 6.432403 AAAAATTCAACTTCCCATGCCTAA 57.568 33.333 0.00 0.00 0.00 2.69
4840 7098 6.552008 TGGGATGTTACTTCCTCTCAAATTT 58.448 36.000 15.42 0.00 33.53 1.82
4855 7113 4.223556 TGTTAATTCGCCTGGGATGTTA 57.776 40.909 0.00 0.00 0.00 2.41
4860 7118 1.340600 CCCTTGTTAATTCGCCTGGGA 60.341 52.381 0.00 0.00 35.64 4.37
4861 7119 1.102978 CCCTTGTTAATTCGCCTGGG 58.897 55.000 0.00 0.00 0.00 4.45
4865 7123 2.014857 GTCCTCCCTTGTTAATTCGCC 58.985 52.381 0.00 0.00 0.00 5.54
4870 7128 6.012508 TCTCTTTCATGTCCTCCCTTGTTAAT 60.013 38.462 0.00 0.00 0.00 1.40
4881 7139 4.950475 TCTCACGTATCTCTTTCATGTCCT 59.050 41.667 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.